Multiple sequence alignment - TraesCS7D01G549900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G549900 chr7D 100.000 2459 0 0 1 2459 634441272 634438814 0.000000e+00 4542.0
1 TraesCS7D01G549900 chr7D 92.857 56 4 0 1127 1182 634440050 634439995 5.640000e-12 82.4
2 TraesCS7D01G549900 chr7D 92.857 56 4 0 1223 1278 634440146 634440091 5.640000e-12 82.4
3 TraesCS7D01G549900 chr7A 93.843 877 48 4 347 1222 731881778 731882649 0.000000e+00 1315.0
4 TraesCS7D01G549900 chr7A 94.069 725 23 7 1748 2454 731883129 731883851 0.000000e+00 1083.0
5 TraesCS7D01G549900 chr7A 88.017 459 28 12 1219 1657 731882682 731883133 3.620000e-143 518.0
6 TraesCS7D01G549900 chr7B 93.220 413 15 4 814 1222 741668250 741668653 1.630000e-166 595.0
7 TraesCS7D01G549900 chr7B 88.610 439 34 11 1222 1656 741668689 741669115 1.010000e-143 520.0
8 TraesCS7D01G549900 chr7B 87.146 459 46 10 1749 2200 741682578 741683030 2.180000e-140 508.0
9 TraesCS7D01G549900 chr7B 93.204 103 7 0 2257 2359 741683032 741683134 4.240000e-33 152.0
10 TraesCS7D01G549900 chr7B 96.226 53 2 0 1223 1275 741668555 741668607 1.210000e-13 87.9
11 TraesCS7D01G549900 chr2D 92.642 299 18 3 1 296 260370396 260370099 6.280000e-116 427.0
12 TraesCS7D01G549900 chr2D 87.097 124 13 3 1631 1753 267347270 267347149 1.190000e-28 137.0
13 TraesCS7D01G549900 chrUn 91.639 299 21 3 1 296 287139146 287138849 6.330000e-111 411.0
14 TraesCS7D01G549900 chrUn 91.639 299 21 3 1 296 287145315 287145018 6.330000e-111 411.0
15 TraesCS7D01G549900 chrUn 91.892 296 20 3 1 293 466024182 466024476 6.330000e-111 411.0
16 TraesCS7D01G549900 chrUn 87.417 302 29 6 1 296 243699005 243698707 3.030000e-89 339.0
17 TraesCS7D01G549900 chr1A 89.967 299 26 3 1 296 473153371 473153074 1.380000e-102 383.0
18 TraesCS7D01G549900 chr1A 89.655 116 10 2 1656 1771 58289720 58289833 1.970000e-31 147.0
19 TraesCS7D01G549900 chr5B 89.597 298 23 6 1 293 149326890 149327184 2.990000e-99 372.0
20 TraesCS7D01G549900 chr5B 90.741 108 8 2 1647 1754 425880113 425880218 2.550000e-30 143.0
21 TraesCS7D01G549900 chr4B 89.073 302 24 8 1 296 62047359 62047657 1.390000e-97 366.0
22 TraesCS7D01G549900 chr5D 88.889 297 27 5 1 293 509445559 509445853 6.460000e-96 361.0
23 TraesCS7D01G549900 chr5D 93.939 99 6 0 1655 1753 558970434 558970532 1.520000e-32 150.0
24 TraesCS7D01G549900 chr5D 90.179 112 10 1 1642 1753 65990478 65990588 7.090000e-31 145.0
25 TraesCS7D01G549900 chr3D 89.831 118 9 3 1655 1770 138076337 138076221 5.480000e-32 148.0
26 TraesCS7D01G549900 chr6B 93.000 100 7 0 1653 1752 309754922 309755021 1.970000e-31 147.0
27 TraesCS7D01G549900 chr6A 76.522 345 35 26 1109 1424 581983257 581983584 1.970000e-31 147.0
28 TraesCS7D01G549900 chr6A 94.643 56 3 0 1223 1278 581982971 581983026 1.210000e-13 87.9
29 TraesCS7D01G549900 chr6A 94.643 56 3 0 1223 1278 582086561 582086616 1.210000e-13 87.9
30 TraesCS7D01G549900 chr6A 96.078 51 2 0 1223 1273 581983275 581983325 1.570000e-12 84.2
31 TraesCS7D01G549900 chr6A 92.857 56 4 0 1223 1278 582095899 582095954 5.640000e-12 82.4
32 TraesCS7D01G549900 chr6A 90.909 55 5 0 1223 1277 582630999 582630945 9.430000e-10 75.0
33 TraesCS7D01G549900 chr4A 90.566 106 10 0 1649 1754 724808120 724808225 9.170000e-30 141.0
34 TraesCS7D01G549900 chr1D 88.793 116 11 2 1656 1771 59879222 59879335 9.170000e-30 141.0
35 TraesCS7D01G549900 chr6D 81.373 102 14 4 1356 1457 435831772 435831676 7.290000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G549900 chr7D 634438814 634441272 2458 True 1568.933333 4542 95.238000 1 2459 3 chr7D.!!$R1 2458
1 TraesCS7D01G549900 chr7A 731881778 731883851 2073 False 972.000000 1315 91.976333 347 2454 3 chr7A.!!$F1 2107
2 TraesCS7D01G549900 chr7B 741668250 741669115 865 False 400.966667 595 92.685333 814 1656 3 chr7B.!!$F1 842
3 TraesCS7D01G549900 chr7B 741682578 741683134 556 False 330.000000 508 90.175000 1749 2359 2 chr7B.!!$F2 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 420 0.031449 GAGTGGATCGAGTAGCCAGC 59.969 60.0 0.0 0.0 46.65 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2366 2464 0.31812 TCGTCGGGGACAAACTTACC 59.682 55.0 0.0 0.0 32.09 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.655527 CCCATTAGGCGCGTCTAG 57.344 61.111 21.00 10.26 0.00 2.43
20 21 1.740285 CCCATTAGGCGCGTCTAGT 59.260 57.895 21.00 15.74 0.00 2.57
21 22 0.104304 CCCATTAGGCGCGTCTAGTT 59.896 55.000 21.00 9.91 0.00 2.24
22 23 1.338973 CCCATTAGGCGCGTCTAGTTA 59.661 52.381 21.00 6.82 0.00 2.24
23 24 2.607282 CCCATTAGGCGCGTCTAGTTAG 60.607 54.545 21.00 11.30 0.00 2.34
24 25 2.607282 CCATTAGGCGCGTCTAGTTAGG 60.607 54.545 21.00 16.26 0.00 2.69
25 26 1.027357 TTAGGCGCGTCTAGTTAGGG 58.973 55.000 21.00 0.00 0.00 3.53
26 27 0.820891 TAGGCGCGTCTAGTTAGGGG 60.821 60.000 18.03 0.00 0.00 4.79
27 28 2.279318 GCGCGTCTAGTTAGGGGC 60.279 66.667 8.43 0.00 36.31 5.80
28 29 2.783288 GCGCGTCTAGTTAGGGGCT 61.783 63.158 8.43 0.00 39.33 5.19
29 30 1.814527 CGCGTCTAGTTAGGGGCTT 59.185 57.895 0.00 0.00 0.00 4.35
30 31 1.027357 CGCGTCTAGTTAGGGGCTTA 58.973 55.000 0.00 0.00 0.00 3.09
31 32 1.001597 CGCGTCTAGTTAGGGGCTTAG 60.002 57.143 0.00 0.00 0.00 2.18
32 33 1.269673 GCGTCTAGTTAGGGGCTTAGC 60.270 57.143 0.00 0.00 0.00 3.09
48 49 6.901081 GGCTTAGCCCAACTTATCATATTT 57.099 37.500 13.12 0.00 44.06 1.40
49 50 7.290110 GGCTTAGCCCAACTTATCATATTTT 57.710 36.000 13.12 0.00 44.06 1.82
50 51 7.726216 GGCTTAGCCCAACTTATCATATTTTT 58.274 34.615 13.12 0.00 44.06 1.94
96 97 6.530019 AACAGATATAAGGCAACCTTTTGG 57.470 37.500 3.85 0.00 41.69 3.28
97 98 5.826643 ACAGATATAAGGCAACCTTTTGGA 58.173 37.500 3.85 0.00 41.69 3.53
98 99 6.252995 ACAGATATAAGGCAACCTTTTGGAA 58.747 36.000 3.85 0.00 41.69 3.53
99 100 6.897413 ACAGATATAAGGCAACCTTTTGGAAT 59.103 34.615 3.85 0.00 41.69 3.01
100 101 7.400052 ACAGATATAAGGCAACCTTTTGGAATT 59.600 33.333 3.85 0.00 41.69 2.17
101 102 8.912988 CAGATATAAGGCAACCTTTTGGAATTA 58.087 33.333 3.85 0.00 41.69 1.40
102 103 9.487442 AGATATAAGGCAACCTTTTGGAATTAA 57.513 29.630 3.85 0.00 41.69 1.40
103 104 9.750125 GATATAAGGCAACCTTTTGGAATTAAG 57.250 33.333 3.85 0.00 41.69 1.85
104 105 4.271696 AGGCAACCTTTTGGAATTAAGC 57.728 40.909 0.00 0.00 44.07 3.09
105 106 3.645687 AGGCAACCTTTTGGAATTAAGCA 59.354 39.130 0.00 0.00 44.07 3.91
106 107 4.102367 AGGCAACCTTTTGGAATTAAGCAA 59.898 37.500 0.00 0.00 44.07 3.91
107 108 5.003160 GGCAACCTTTTGGAATTAAGCAAT 58.997 37.500 0.00 0.00 44.07 3.56
108 109 6.013812 AGGCAACCTTTTGGAATTAAGCAATA 60.014 34.615 0.00 0.00 44.07 1.90
109 110 6.652900 GGCAACCTTTTGGAATTAAGCAATAA 59.347 34.615 0.00 0.00 44.07 1.40
110 111 7.148423 GGCAACCTTTTGGAATTAAGCAATAAG 60.148 37.037 0.00 0.00 44.07 1.73
111 112 7.387673 GCAACCTTTTGGAATTAAGCAATAAGT 59.612 33.333 0.00 0.00 44.07 2.24
112 113 8.925700 CAACCTTTTGGAATTAAGCAATAAGTC 58.074 33.333 2.28 2.28 44.07 3.01
113 114 8.189119 ACCTTTTGGAATTAAGCAATAAGTCA 57.811 30.769 10.53 0.00 39.71 3.41
114 115 8.815912 ACCTTTTGGAATTAAGCAATAAGTCAT 58.184 29.630 10.53 0.00 39.71 3.06
125 126 6.884280 AGCAATAAGTCATAACTATTGCCC 57.116 37.500 17.82 0.00 43.83 5.36
126 127 5.470098 AGCAATAAGTCATAACTATTGCCCG 59.530 40.000 17.82 0.00 43.83 6.13
127 128 5.468746 GCAATAAGTCATAACTATTGCCCGA 59.531 40.000 12.76 0.00 41.07 5.14
128 129 6.565999 GCAATAAGTCATAACTATTGCCCGAC 60.566 42.308 12.76 0.00 41.07 4.79
129 130 4.755266 AAGTCATAACTATTGCCCGACT 57.245 40.909 0.00 0.00 33.48 4.18
130 131 4.323553 AGTCATAACTATTGCCCGACTC 57.676 45.455 0.00 0.00 32.59 3.36
131 132 3.069729 AGTCATAACTATTGCCCGACTCC 59.930 47.826 0.00 0.00 32.59 3.85
132 133 2.367567 TCATAACTATTGCCCGACTCCC 59.632 50.000 0.00 0.00 0.00 4.30
133 134 1.125633 TAACTATTGCCCGACTCCCC 58.874 55.000 0.00 0.00 0.00 4.81
134 135 0.620700 AACTATTGCCCGACTCCCCT 60.621 55.000 0.00 0.00 0.00 4.79
135 136 0.620700 ACTATTGCCCGACTCCCCTT 60.621 55.000 0.00 0.00 0.00 3.95
136 137 1.343681 ACTATTGCCCGACTCCCCTTA 60.344 52.381 0.00 0.00 0.00 2.69
137 138 1.344763 CTATTGCCCGACTCCCCTTAG 59.655 57.143 0.00 0.00 0.00 2.18
138 139 1.345715 ATTGCCCGACTCCCCTTAGG 61.346 60.000 0.00 0.00 0.00 2.69
139 140 2.042230 GCCCGACTCCCCTTAGGA 60.042 66.667 0.00 0.00 44.91 2.94
147 148 3.007581 TCCCCTTAGGAGCCAGAAC 57.992 57.895 0.00 0.00 40.93 3.01
148 149 0.620700 TCCCCTTAGGAGCCAGAACC 60.621 60.000 0.00 0.00 40.93 3.62
149 150 1.636769 CCCCTTAGGAGCCAGAACCC 61.637 65.000 0.00 0.00 38.24 4.11
150 151 0.621862 CCCTTAGGAGCCAGAACCCT 60.622 60.000 0.00 0.00 33.47 4.34
151 152 1.344087 CCCTTAGGAGCCAGAACCCTA 60.344 57.143 0.00 0.00 33.47 3.53
152 153 2.478292 CCTTAGGAGCCAGAACCCTAA 58.522 52.381 0.00 0.00 39.47 2.69
153 154 2.844348 CCTTAGGAGCCAGAACCCTAAA 59.156 50.000 0.00 0.00 40.73 1.85
154 155 3.370633 CCTTAGGAGCCAGAACCCTAAAC 60.371 52.174 0.00 0.00 40.73 2.01
155 156 0.992695 AGGAGCCAGAACCCTAAACC 59.007 55.000 0.00 0.00 0.00 3.27
156 157 0.034380 GGAGCCAGAACCCTAAACCC 60.034 60.000 0.00 0.00 0.00 4.11
157 158 0.992695 GAGCCAGAACCCTAAACCCT 59.007 55.000 0.00 0.00 0.00 4.34
158 159 2.193993 GAGCCAGAACCCTAAACCCTA 58.806 52.381 0.00 0.00 0.00 3.53
159 160 2.170817 GAGCCAGAACCCTAAACCCTAG 59.829 54.545 0.00 0.00 0.00 3.02
160 161 1.408405 GCCAGAACCCTAAACCCTAGC 60.408 57.143 0.00 0.00 0.00 3.42
161 162 1.134491 CCAGAACCCTAAACCCTAGCG 60.134 57.143 0.00 0.00 0.00 4.26
162 163 0.540454 AGAACCCTAAACCCTAGCGC 59.460 55.000 0.00 0.00 0.00 5.92
163 164 0.463295 GAACCCTAAACCCTAGCGCC 60.463 60.000 2.29 0.00 0.00 6.53
164 165 0.912968 AACCCTAAACCCTAGCGCCT 60.913 55.000 2.29 0.00 0.00 5.52
165 166 1.335882 ACCCTAAACCCTAGCGCCTC 61.336 60.000 2.29 0.00 0.00 4.70
166 167 1.049289 CCCTAAACCCTAGCGCCTCT 61.049 60.000 2.29 0.00 0.00 3.69
167 168 0.389757 CCTAAACCCTAGCGCCTCTC 59.610 60.000 2.29 0.00 0.00 3.20
168 169 1.112113 CTAAACCCTAGCGCCTCTCA 58.888 55.000 2.29 0.00 0.00 3.27
169 170 0.822164 TAAACCCTAGCGCCTCTCAC 59.178 55.000 2.29 0.00 0.00 3.51
170 171 1.900545 AAACCCTAGCGCCTCTCACC 61.901 60.000 2.29 0.00 0.00 4.02
171 172 2.759973 CCCTAGCGCCTCTCACCA 60.760 66.667 2.29 0.00 0.00 4.17
172 173 2.496817 CCTAGCGCCTCTCACCAC 59.503 66.667 2.29 0.00 0.00 4.16
173 174 2.496817 CTAGCGCCTCTCACCACC 59.503 66.667 2.29 0.00 0.00 4.61
174 175 3.417275 CTAGCGCCTCTCACCACCG 62.417 68.421 2.29 0.00 0.00 4.94
199 200 4.933064 CTCCTCCCGCGCGATCAC 62.933 72.222 34.63 0.00 0.00 3.06
233 234 4.749310 CAGCCGCGCTCAACCTCT 62.749 66.667 5.56 0.00 36.40 3.69
234 235 4.443266 AGCCGCGCTCAACCTCTC 62.443 66.667 5.56 0.00 30.62 3.20
235 236 4.742201 GCCGCGCTCAACCTCTCA 62.742 66.667 5.56 0.00 0.00 3.27
236 237 2.811317 CCGCGCTCAACCTCTCAC 60.811 66.667 5.56 0.00 0.00 3.51
237 238 2.811317 CGCGCTCAACCTCTCACC 60.811 66.667 5.56 0.00 0.00 4.02
238 239 2.343758 GCGCTCAACCTCTCACCA 59.656 61.111 0.00 0.00 0.00 4.17
239 240 1.301716 GCGCTCAACCTCTCACCAA 60.302 57.895 0.00 0.00 0.00 3.67
240 241 1.569479 GCGCTCAACCTCTCACCAAC 61.569 60.000 0.00 0.00 0.00 3.77
241 242 0.951040 CGCTCAACCTCTCACCAACC 60.951 60.000 0.00 0.00 0.00 3.77
242 243 0.606673 GCTCAACCTCTCACCAACCC 60.607 60.000 0.00 0.00 0.00 4.11
243 244 0.764890 CTCAACCTCTCACCAACCCA 59.235 55.000 0.00 0.00 0.00 4.51
244 245 0.472471 TCAACCTCTCACCAACCCAC 59.528 55.000 0.00 0.00 0.00 4.61
245 246 0.537371 CAACCTCTCACCAACCCACC 60.537 60.000 0.00 0.00 0.00 4.61
246 247 0.697854 AACCTCTCACCAACCCACCT 60.698 55.000 0.00 0.00 0.00 4.00
247 248 1.128188 ACCTCTCACCAACCCACCTC 61.128 60.000 0.00 0.00 0.00 3.85
248 249 0.838122 CCTCTCACCAACCCACCTCT 60.838 60.000 0.00 0.00 0.00 3.69
249 250 0.610687 CTCTCACCAACCCACCTCTC 59.389 60.000 0.00 0.00 0.00 3.20
250 251 0.105194 TCTCACCAACCCACCTCTCA 60.105 55.000 0.00 0.00 0.00 3.27
251 252 0.987294 CTCACCAACCCACCTCTCAT 59.013 55.000 0.00 0.00 0.00 2.90
252 253 0.984230 TCACCAACCCACCTCTCATC 59.016 55.000 0.00 0.00 0.00 2.92
253 254 0.035056 CACCAACCCACCTCTCATCC 60.035 60.000 0.00 0.00 0.00 3.51
254 255 1.208165 ACCAACCCACCTCTCATCCC 61.208 60.000 0.00 0.00 0.00 3.85
255 256 0.916358 CCAACCCACCTCTCATCCCT 60.916 60.000 0.00 0.00 0.00 4.20
256 257 1.625228 CCAACCCACCTCTCATCCCTA 60.625 57.143 0.00 0.00 0.00 3.53
257 258 1.486726 CAACCCACCTCTCATCCCTAC 59.513 57.143 0.00 0.00 0.00 3.18
258 259 0.716591 ACCCACCTCTCATCCCTACA 59.283 55.000 0.00 0.00 0.00 2.74
259 260 1.080498 ACCCACCTCTCATCCCTACAA 59.920 52.381 0.00 0.00 0.00 2.41
260 261 1.486726 CCCACCTCTCATCCCTACAAC 59.513 57.143 0.00 0.00 0.00 3.32
261 262 1.486726 CCACCTCTCATCCCTACAACC 59.513 57.143 0.00 0.00 0.00 3.77
262 263 2.472029 CACCTCTCATCCCTACAACCT 58.528 52.381 0.00 0.00 0.00 3.50
263 264 3.630054 CCACCTCTCATCCCTACAACCTA 60.630 52.174 0.00 0.00 0.00 3.08
264 265 3.385111 CACCTCTCATCCCTACAACCTAC 59.615 52.174 0.00 0.00 0.00 3.18
265 266 3.272551 ACCTCTCATCCCTACAACCTACT 59.727 47.826 0.00 0.00 0.00 2.57
266 267 3.639094 CCTCTCATCCCTACAACCTACTG 59.361 52.174 0.00 0.00 0.00 2.74
267 268 4.282496 CTCTCATCCCTACAACCTACTGT 58.718 47.826 0.00 0.00 0.00 3.55
268 269 4.684724 TCTCATCCCTACAACCTACTGTT 58.315 43.478 0.00 0.00 37.80 3.16
276 277 1.677552 AACCTACTGTTGAGGCCCG 59.322 57.895 0.00 0.00 37.63 6.13
277 278 1.838073 AACCTACTGTTGAGGCCCGG 61.838 60.000 0.00 0.00 37.63 5.73
278 279 2.291043 CCTACTGTTGAGGCCCGGT 61.291 63.158 0.00 0.00 0.00 5.28
279 280 1.079127 CTACTGTTGAGGCCCGGTG 60.079 63.158 0.00 0.00 0.00 4.94
280 281 1.534476 TACTGTTGAGGCCCGGTGA 60.534 57.895 0.00 0.00 0.00 4.02
281 282 1.823169 TACTGTTGAGGCCCGGTGAC 61.823 60.000 0.00 0.00 0.00 3.67
282 283 3.901797 CTGTTGAGGCCCGGTGACC 62.902 68.421 0.00 0.00 0.00 4.02
283 284 4.717313 GTTGAGGCCCGGTGACCC 62.717 72.222 0.00 0.00 0.00 4.46
284 285 4.974438 TTGAGGCCCGGTGACCCT 62.974 66.667 0.00 0.00 0.00 4.34
285 286 3.549433 TTGAGGCCCGGTGACCCTA 62.549 63.158 0.00 0.00 0.00 3.53
286 287 3.155167 GAGGCCCGGTGACCCTAG 61.155 72.222 0.00 0.00 0.00 3.02
289 290 3.851128 GCCCGGTGACCCTAGCTC 61.851 72.222 0.00 0.00 0.00 4.09
290 291 3.155167 CCCGGTGACCCTAGCTCC 61.155 72.222 0.00 0.00 0.00 4.70
291 292 2.042843 CCGGTGACCCTAGCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
292 293 1.229359 CCGGTGACCCTAGCTCCTA 59.771 63.158 0.00 0.00 0.00 2.94
293 294 1.108132 CCGGTGACCCTAGCTCCTAC 61.108 65.000 0.00 0.00 0.00 3.18
294 295 1.108132 CGGTGACCCTAGCTCCTACC 61.108 65.000 0.00 0.00 0.00 3.18
295 296 0.032416 GGTGACCCTAGCTCCTACCA 60.032 60.000 0.00 0.00 0.00 3.25
296 297 1.404843 GTGACCCTAGCTCCTACCAG 58.595 60.000 0.00 0.00 0.00 4.00
297 298 1.063867 GTGACCCTAGCTCCTACCAGA 60.064 57.143 0.00 0.00 0.00 3.86
298 299 1.644337 TGACCCTAGCTCCTACCAGAA 59.356 52.381 0.00 0.00 0.00 3.02
299 300 2.247635 TGACCCTAGCTCCTACCAGAAT 59.752 50.000 0.00 0.00 0.00 2.40
300 301 2.630580 GACCCTAGCTCCTACCAGAATG 59.369 54.545 0.00 0.00 0.00 2.67
315 316 4.510167 CAGAATGGGACCAGGATTACTT 57.490 45.455 0.00 0.00 0.00 2.24
316 317 5.630415 CAGAATGGGACCAGGATTACTTA 57.370 43.478 0.00 0.00 0.00 2.24
317 318 6.192970 CAGAATGGGACCAGGATTACTTAT 57.807 41.667 0.00 0.00 0.00 1.73
318 319 7.316393 CAGAATGGGACCAGGATTACTTATA 57.684 40.000 0.00 0.00 0.00 0.98
319 320 7.162082 CAGAATGGGACCAGGATTACTTATAC 58.838 42.308 0.00 0.00 0.00 1.47
320 321 7.016661 CAGAATGGGACCAGGATTACTTATACT 59.983 40.741 0.00 0.00 0.00 2.12
321 322 6.936968 ATGGGACCAGGATTACTTATACTC 57.063 41.667 0.00 0.00 0.00 2.59
322 323 5.784023 TGGGACCAGGATTACTTATACTCA 58.216 41.667 0.00 0.00 0.00 3.41
323 324 6.206787 TGGGACCAGGATTACTTATACTCAA 58.793 40.000 0.00 0.00 0.00 3.02
324 325 6.099269 TGGGACCAGGATTACTTATACTCAAC 59.901 42.308 0.00 0.00 0.00 3.18
325 326 6.214399 GGACCAGGATTACTTATACTCAACG 58.786 44.000 0.00 0.00 0.00 4.10
326 327 6.040166 GGACCAGGATTACTTATACTCAACGA 59.960 42.308 0.00 0.00 0.00 3.85
327 328 7.414222 ACCAGGATTACTTATACTCAACGAA 57.586 36.000 0.00 0.00 0.00 3.85
328 329 8.019656 ACCAGGATTACTTATACTCAACGAAT 57.980 34.615 0.00 0.00 0.00 3.34
329 330 8.142551 ACCAGGATTACTTATACTCAACGAATC 58.857 37.037 0.00 0.00 0.00 2.52
330 331 8.361139 CCAGGATTACTTATACTCAACGAATCT 58.639 37.037 0.00 0.00 0.00 2.40
331 332 9.186323 CAGGATTACTTATACTCAACGAATCTG 57.814 37.037 0.00 0.00 0.00 2.90
332 333 8.915036 AGGATTACTTATACTCAACGAATCTGT 58.085 33.333 0.00 0.00 0.00 3.41
333 334 8.969267 GGATTACTTATACTCAACGAATCTGTG 58.031 37.037 0.00 0.00 0.00 3.66
334 335 9.731819 GATTACTTATACTCAACGAATCTGTGA 57.268 33.333 0.00 0.00 0.00 3.58
336 337 7.813852 ACTTATACTCAACGAATCTGTGAAC 57.186 36.000 0.00 0.00 0.00 3.18
337 338 7.375834 ACTTATACTCAACGAATCTGTGAACA 58.624 34.615 0.00 0.00 0.00 3.18
338 339 8.035394 ACTTATACTCAACGAATCTGTGAACAT 58.965 33.333 0.00 0.00 0.00 2.71
339 340 9.516314 CTTATACTCAACGAATCTGTGAACATA 57.484 33.333 0.00 0.00 0.00 2.29
340 341 7.993821 ATACTCAACGAATCTGTGAACATAG 57.006 36.000 0.00 0.00 0.00 2.23
341 342 5.784177 ACTCAACGAATCTGTGAACATAGT 58.216 37.500 0.00 0.00 0.00 2.12
342 343 5.635280 ACTCAACGAATCTGTGAACATAGTG 59.365 40.000 0.00 0.00 0.00 2.74
343 344 4.388773 TCAACGAATCTGTGAACATAGTGC 59.611 41.667 0.00 0.00 0.00 4.40
344 345 4.193826 ACGAATCTGTGAACATAGTGCT 57.806 40.909 0.00 0.00 0.00 4.40
345 346 4.177026 ACGAATCTGTGAACATAGTGCTC 58.823 43.478 0.00 0.00 0.00 4.26
351 352 4.039124 TCTGTGAACATAGTGCTCAACTGA 59.961 41.667 0.00 0.00 40.26 3.41
365 366 4.787882 GCTCAACTGAACTTGTCTTTGCTC 60.788 45.833 0.00 0.00 0.00 4.26
366 367 3.627577 TCAACTGAACTTGTCTTTGCTCC 59.372 43.478 0.00 0.00 0.00 4.70
373 374 2.158871 ACTTGTCTTTGCTCCGGTTACA 60.159 45.455 0.00 0.00 0.00 2.41
374 375 2.163818 TGTCTTTGCTCCGGTTACAG 57.836 50.000 0.00 0.00 0.00 2.74
377 378 1.079503 CTTTGCTCCGGTTACAGCTC 58.920 55.000 13.44 0.00 36.53 4.09
382 383 2.202756 CCGGTTACAGCTCTCGGC 60.203 66.667 0.00 0.00 42.19 5.54
419 420 0.031449 GAGTGGATCGAGTAGCCAGC 59.969 60.000 0.00 0.00 46.65 4.85
425 426 2.164624 GGATCGAGTAGCCAGCGATATT 59.835 50.000 0.00 0.00 43.91 1.28
495 496 4.148825 GACCGTCCGCTGCTGGAT 62.149 66.667 14.45 1.71 40.91 3.41
518 519 0.521291 TAGCAATTCAAGGTGCGTGC 59.479 50.000 0.00 0.00 45.62 5.34
633 635 9.007901 AGGAATTGTTCTAAGATCTGTGAAAAG 57.992 33.333 10.91 0.00 0.00 2.27
641 643 5.422214 AAGATCTGTGAAAAGTATCCCGT 57.578 39.130 0.00 0.00 0.00 5.28
649 651 5.473846 TGTGAAAAGTATCCCGTGCATTAAA 59.526 36.000 0.00 0.00 0.00 1.52
650 652 6.027749 GTGAAAAGTATCCCGTGCATTAAAG 58.972 40.000 0.00 0.00 0.00 1.85
707 709 3.525609 TGTGCCTTGGAGGGTGATATTTA 59.474 43.478 0.00 0.00 35.37 1.40
716 718 8.533569 TTGGAGGGTGATATTTAAAATCCTTC 57.466 34.615 0.00 0.00 0.00 3.46
731 733 4.637483 ATCCTTCATTATTTGCCACACG 57.363 40.909 0.00 0.00 0.00 4.49
778 780 8.147058 ACATGTTGTGGCAAATTATAAAAGTGA 58.853 29.630 0.00 0.00 0.00 3.41
1034 1037 1.066002 CACACAACCAGGACAAGCAAG 59.934 52.381 0.00 0.00 0.00 4.01
1064 1067 0.250513 AGTGTCAGATTTCCCGAGGC 59.749 55.000 0.00 0.00 0.00 4.70
1377 1419 0.249911 GCACCGGTGAGAACAAGAGT 60.250 55.000 38.30 0.00 0.00 3.24
1453 1511 1.745827 GCCCGCTACCTTTGCAGAATA 60.746 52.381 0.00 0.00 0.00 1.75
1494 1552 5.357257 ACTTCCACCGTGTATACATGAATC 58.643 41.667 23.87 3.71 34.90 2.52
1505 1563 7.531198 CGTGTATACATGAATCGAGTCTAGTTC 59.469 40.741 18.59 0.68 34.90 3.01
1525 1583 3.151554 TCAACTAGCTCACTTGGTCGTA 58.848 45.455 0.00 0.00 0.00 3.43
1571 1646 2.413310 ACAGTGTGTCGAGGGTTTTT 57.587 45.000 0.00 0.00 0.00 1.94
1660 1736 8.642432 TGCTATGGCATCTAATATACATACTCC 58.358 37.037 1.65 0.00 44.28 3.85
1662 1738 9.373450 CTATGGCATCTAATATACATACTCCCT 57.627 37.037 1.65 0.00 0.00 4.20
1663 1739 7.661536 TGGCATCTAATATACATACTCCCTC 57.338 40.000 0.00 0.00 0.00 4.30
1664 1740 7.422512 TGGCATCTAATATACATACTCCCTCT 58.577 38.462 0.00 0.00 0.00 3.69
1665 1741 7.343057 TGGCATCTAATATACATACTCCCTCTG 59.657 40.741 0.00 0.00 0.00 3.35
1666 1742 7.343316 GGCATCTAATATACATACTCCCTCTGT 59.657 40.741 0.00 0.00 0.00 3.41
1667 1743 8.410141 GCATCTAATATACATACTCCCTCTGTC 58.590 40.741 0.00 0.00 0.00 3.51
1668 1744 8.908903 CATCTAATATACATACTCCCTCTGTCC 58.091 40.741 0.00 0.00 0.00 4.02
1669 1745 7.411808 TCTAATATACATACTCCCTCTGTCCC 58.588 42.308 0.00 0.00 0.00 4.46
1670 1746 3.993658 ATACATACTCCCTCTGTCCCA 57.006 47.619 0.00 0.00 0.00 4.37
1671 1747 2.642171 ACATACTCCCTCTGTCCCAA 57.358 50.000 0.00 0.00 0.00 4.12
1672 1748 2.915869 ACATACTCCCTCTGTCCCAAA 58.084 47.619 0.00 0.00 0.00 3.28
1673 1749 3.256704 ACATACTCCCTCTGTCCCAAAA 58.743 45.455 0.00 0.00 0.00 2.44
1674 1750 3.852578 ACATACTCCCTCTGTCCCAAAAT 59.147 43.478 0.00 0.00 0.00 1.82
1675 1751 5.036916 ACATACTCCCTCTGTCCCAAAATA 58.963 41.667 0.00 0.00 0.00 1.40
1676 1752 5.491078 ACATACTCCCTCTGTCCCAAAATAA 59.509 40.000 0.00 0.00 0.00 1.40
1677 1753 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
1678 1754 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
1679 1755 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
1680 1756 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
1681 1757 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
1682 1758 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
1683 1759 4.938226 CCTCTGTCCCAAAATAAGTGTCTC 59.062 45.833 0.00 0.00 0.00 3.36
1684 1760 5.513094 CCTCTGTCCCAAAATAAGTGTCTCA 60.513 44.000 0.00 0.00 0.00 3.27
1685 1761 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
1686 1762 5.763204 TCTGTCCCAAAATAAGTGTCTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
1687 1763 5.690865 TGTCCCAAAATAAGTGTCTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
1688 1764 6.126409 TGTCCCAAAATAAGTGTCTCAACTT 58.874 36.000 0.00 0.00 42.89 2.66
1689 1765 6.605594 TGTCCCAAAATAAGTGTCTCAACTTT 59.394 34.615 0.00 0.00 40.77 2.66
1690 1766 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
1691 1767 5.691754 CCCAAAATAAGTGTCTCAACTTTGC 59.308 40.000 0.00 0.00 40.77 3.68
1692 1768 6.272318 CCAAAATAAGTGTCTCAACTTTGCA 58.728 36.000 0.00 0.00 40.77 4.08
1693 1769 6.198966 CCAAAATAAGTGTCTCAACTTTGCAC 59.801 38.462 0.00 0.00 40.77 4.57
1694 1770 6.699575 AAATAAGTGTCTCAACTTTGCACT 57.300 33.333 0.00 0.00 40.77 4.40
1695 1771 7.801716 AAATAAGTGTCTCAACTTTGCACTA 57.198 32.000 0.00 0.00 40.77 2.74
1696 1772 7.801716 AATAAGTGTCTCAACTTTGCACTAA 57.198 32.000 0.00 0.00 40.77 2.24
1697 1773 5.485662 AAGTGTCTCAACTTTGCACTAAC 57.514 39.130 0.00 0.00 37.05 2.34
1698 1774 4.770795 AGTGTCTCAACTTTGCACTAACT 58.229 39.130 0.00 0.00 38.46 2.24
1699 1775 5.186198 AGTGTCTCAACTTTGCACTAACTT 58.814 37.500 0.00 0.00 38.46 2.66
1700 1776 5.648092 AGTGTCTCAACTTTGCACTAACTTT 59.352 36.000 0.00 0.00 38.46 2.66
1701 1777 6.821665 AGTGTCTCAACTTTGCACTAACTTTA 59.178 34.615 0.00 0.00 38.46 1.85
1702 1778 7.011482 AGTGTCTCAACTTTGCACTAACTTTAG 59.989 37.037 0.00 0.00 38.46 1.85
1703 1779 6.821665 TGTCTCAACTTTGCACTAACTTTAGT 59.178 34.615 0.00 0.00 44.42 2.24
1704 1780 7.982919 TGTCTCAACTTTGCACTAACTTTAGTA 59.017 33.333 1.30 0.00 41.82 1.82
1705 1781 8.274248 GTCTCAACTTTGCACTAACTTTAGTAC 58.726 37.037 1.30 0.00 41.82 2.73
1706 1782 7.982919 TCTCAACTTTGCACTAACTTTAGTACA 59.017 33.333 1.30 0.00 41.82 2.90
1707 1783 8.495361 TCAACTTTGCACTAACTTTAGTACAA 57.505 30.769 9.74 9.74 42.33 2.41
1708 1784 8.948145 TCAACTTTGCACTAACTTTAGTACAAA 58.052 29.630 19.50 19.50 46.64 2.83
1742 1818 8.528044 AAAGTTAAGACACTTATTTTGGGACA 57.472 30.769 0.00 0.00 35.87 4.02
1743 1819 7.745620 AGTTAAGACACTTATTTTGGGACAG 57.254 36.000 0.00 0.00 42.39 3.51
1744 1820 7.514721 AGTTAAGACACTTATTTTGGGACAGA 58.485 34.615 0.00 0.00 42.39 3.41
1745 1821 7.661847 AGTTAAGACACTTATTTTGGGACAGAG 59.338 37.037 0.00 0.00 42.39 3.35
1746 1822 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
1747 1823 4.597507 AGACACTTATTTTGGGACAGAGGA 59.402 41.667 0.00 0.00 42.39 3.71
1872 1950 3.434299 ACAAACTAATTACTTCCACGCGG 59.566 43.478 12.47 0.00 0.00 6.46
1909 1987 4.436332 CAAGGATGATCAACGACTGATGA 58.564 43.478 0.00 2.36 45.23 2.92
1922 2000 5.471257 ACGACTGATGATGATGATGATGAG 58.529 41.667 0.00 0.00 0.00 2.90
1975 2068 0.608130 CGGTGAACAGTGATGGAGGA 59.392 55.000 0.00 0.00 0.00 3.71
1976 2069 1.673033 CGGTGAACAGTGATGGAGGAC 60.673 57.143 0.00 0.00 0.00 3.85
2183 2281 0.942410 TCGTGGCGCACTAAACAGAC 60.942 55.000 10.83 0.00 31.34 3.51
2205 2303 7.857389 CAGACCATATGAAAATAATTGGACGTG 59.143 37.037 3.65 0.00 0.00 4.49
2219 2317 5.384063 TTGGACGTGCACAAATTATGATT 57.616 34.783 18.64 0.00 0.00 2.57
2241 2339 9.466497 TGATTTTCCATAGATGATTTATAGGGC 57.534 33.333 0.00 0.00 0.00 5.19
2433 2531 2.189594 CACAAGAAGTGGATGGAGCA 57.810 50.000 0.00 0.00 44.69 4.26
2445 2543 4.301027 GGAGCACCCCGCCGATAG 62.301 72.222 0.00 0.00 44.04 2.08
2458 2556 1.300233 CGATAGGAAGGTGGCTCGC 60.300 63.158 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.104304 AACTAGACGCGCCTAATGGG 59.896 55.000 5.73 0.00 38.36 4.00
3 4 2.607282 CCTAACTAGACGCGCCTAATGG 60.607 54.545 5.73 0.55 0.00 3.16
4 5 2.607282 CCCTAACTAGACGCGCCTAATG 60.607 54.545 5.73 0.00 0.00 1.90
5 6 1.612463 CCCTAACTAGACGCGCCTAAT 59.388 52.381 5.73 0.00 0.00 1.73
6 7 1.027357 CCCTAACTAGACGCGCCTAA 58.973 55.000 5.73 0.00 0.00 2.69
7 8 0.820891 CCCCTAACTAGACGCGCCTA 60.821 60.000 5.73 3.18 0.00 3.93
8 9 2.125961 CCCCTAACTAGACGCGCCT 61.126 63.158 5.73 1.58 0.00 5.52
9 10 2.416260 CCCCTAACTAGACGCGCC 59.584 66.667 5.73 0.00 0.00 6.53
10 11 2.279318 GCCCCTAACTAGACGCGC 60.279 66.667 5.73 0.00 0.00 6.86
11 12 1.001597 CTAAGCCCCTAACTAGACGCG 60.002 57.143 3.53 3.53 0.00 6.01
12 13 1.269673 GCTAAGCCCCTAACTAGACGC 60.270 57.143 0.00 0.00 0.00 5.19
13 14 1.340568 GGCTAAGCCCCTAACTAGACG 59.659 57.143 0.00 0.00 44.06 4.18
70 71 8.695456 CCAAAAGGTTGCCTTATATCTGTTTAT 58.305 33.333 0.37 0.00 43.92 1.40
71 72 7.891183 TCCAAAAGGTTGCCTTATATCTGTTTA 59.109 33.333 0.37 0.00 43.92 2.01
72 73 6.723977 TCCAAAAGGTTGCCTTATATCTGTTT 59.276 34.615 0.37 0.00 43.92 2.83
73 74 6.252995 TCCAAAAGGTTGCCTTATATCTGTT 58.747 36.000 0.37 0.00 43.92 3.16
74 75 5.826643 TCCAAAAGGTTGCCTTATATCTGT 58.173 37.500 0.37 0.00 43.92 3.41
75 76 6.773976 TTCCAAAAGGTTGCCTTATATCTG 57.226 37.500 0.37 0.00 43.92 2.90
76 77 7.978099 AATTCCAAAAGGTTGCCTTATATCT 57.022 32.000 0.37 0.00 43.92 1.98
77 78 9.750125 CTTAATTCCAAAAGGTTGCCTTATATC 57.250 33.333 0.37 0.00 43.92 1.63
78 79 8.204160 GCTTAATTCCAAAAGGTTGCCTTATAT 58.796 33.333 0.37 0.00 43.92 0.86
79 80 7.179338 TGCTTAATTCCAAAAGGTTGCCTTATA 59.821 33.333 0.37 0.00 43.92 0.98
80 81 6.013812 TGCTTAATTCCAAAAGGTTGCCTTAT 60.014 34.615 0.37 0.00 43.92 1.73
81 82 5.305644 TGCTTAATTCCAAAAGGTTGCCTTA 59.694 36.000 0.37 0.00 43.92 2.69
83 84 3.645687 TGCTTAATTCCAAAAGGTTGCCT 59.354 39.130 0.00 0.00 33.01 4.75
84 85 4.001618 TGCTTAATTCCAAAAGGTTGCC 57.998 40.909 0.00 0.00 33.01 4.52
85 86 7.387673 ACTTATTGCTTAATTCCAAAAGGTTGC 59.612 33.333 0.00 0.00 33.01 4.17
86 87 8.831715 ACTTATTGCTTAATTCCAAAAGGTTG 57.168 30.769 0.00 0.00 34.25 3.77
87 88 8.646900 TGACTTATTGCTTAATTCCAAAAGGTT 58.353 29.630 0.00 0.00 0.00 3.50
88 89 8.189119 TGACTTATTGCTTAATTCCAAAAGGT 57.811 30.769 0.00 0.00 0.00 3.50
99 100 8.846211 GGGCAATAGTTATGACTTATTGCTTAA 58.154 33.333 25.61 1.09 43.29 1.85
100 101 7.172532 CGGGCAATAGTTATGACTTATTGCTTA 59.827 37.037 25.61 1.64 43.29 3.09
101 102 6.017109 CGGGCAATAGTTATGACTTATTGCTT 60.017 38.462 25.61 3.75 43.29 3.91
102 103 5.470098 CGGGCAATAGTTATGACTTATTGCT 59.530 40.000 25.61 0.00 43.29 3.91
103 104 5.468746 TCGGGCAATAGTTATGACTTATTGC 59.531 40.000 22.37 22.37 43.19 3.56
104 105 6.706270 AGTCGGGCAATAGTTATGACTTATTG 59.294 38.462 0.00 5.66 37.33 1.90
105 106 6.827727 AGTCGGGCAATAGTTATGACTTATT 58.172 36.000 0.00 0.00 37.33 1.40
106 107 6.420913 AGTCGGGCAATAGTTATGACTTAT 57.579 37.500 0.00 0.00 37.33 1.73
107 108 5.221382 GGAGTCGGGCAATAGTTATGACTTA 60.221 44.000 0.00 0.00 35.52 2.24
108 109 4.443034 GGAGTCGGGCAATAGTTATGACTT 60.443 45.833 0.00 0.00 35.52 3.01
109 110 3.069729 GGAGTCGGGCAATAGTTATGACT 59.930 47.826 0.00 0.00 37.87 3.41
110 111 3.391049 GGAGTCGGGCAATAGTTATGAC 58.609 50.000 0.00 0.00 0.00 3.06
111 112 2.367567 GGGAGTCGGGCAATAGTTATGA 59.632 50.000 0.00 0.00 0.00 2.15
112 113 2.550208 GGGGAGTCGGGCAATAGTTATG 60.550 54.545 0.00 0.00 0.00 1.90
113 114 1.697982 GGGGAGTCGGGCAATAGTTAT 59.302 52.381 0.00 0.00 0.00 1.89
114 115 1.125633 GGGGAGTCGGGCAATAGTTA 58.874 55.000 0.00 0.00 0.00 2.24
115 116 0.620700 AGGGGAGTCGGGCAATAGTT 60.621 55.000 0.00 0.00 0.00 2.24
116 117 0.620700 AAGGGGAGTCGGGCAATAGT 60.621 55.000 0.00 0.00 0.00 2.12
117 118 1.344763 CTAAGGGGAGTCGGGCAATAG 59.655 57.143 0.00 0.00 0.00 1.73
118 119 1.420430 CTAAGGGGAGTCGGGCAATA 58.580 55.000 0.00 0.00 0.00 1.90
119 120 1.345715 CCTAAGGGGAGTCGGGCAAT 61.346 60.000 0.00 0.00 37.23 3.56
120 121 1.993391 CCTAAGGGGAGTCGGGCAA 60.993 63.158 0.00 0.00 37.23 4.52
121 122 2.365105 CCTAAGGGGAGTCGGGCA 60.365 66.667 0.00 0.00 37.23 5.36
122 123 2.042230 TCCTAAGGGGAGTCGGGC 60.042 66.667 0.00 0.00 39.58 6.13
129 130 0.620700 GGTTCTGGCTCCTAAGGGGA 60.621 60.000 0.00 0.00 42.77 4.81
130 131 1.636769 GGGTTCTGGCTCCTAAGGGG 61.637 65.000 0.00 0.00 0.00 4.79
131 132 0.621862 AGGGTTCTGGCTCCTAAGGG 60.622 60.000 0.00 0.00 0.00 3.95
132 133 2.176247 TAGGGTTCTGGCTCCTAAGG 57.824 55.000 0.00 0.00 30.91 2.69
133 134 3.370633 GGTTTAGGGTTCTGGCTCCTAAG 60.371 52.174 0.00 0.00 42.12 2.18
134 135 2.574824 GGTTTAGGGTTCTGGCTCCTAA 59.425 50.000 0.00 0.00 40.26 2.69
135 136 2.193993 GGTTTAGGGTTCTGGCTCCTA 58.806 52.381 0.00 0.00 32.46 2.94
136 137 0.992695 GGTTTAGGGTTCTGGCTCCT 59.007 55.000 0.00 0.00 34.85 3.69
137 138 0.034380 GGGTTTAGGGTTCTGGCTCC 60.034 60.000 0.00 0.00 0.00 4.70
138 139 0.992695 AGGGTTTAGGGTTCTGGCTC 59.007 55.000 0.00 0.00 0.00 4.70
139 140 2.197465 CTAGGGTTTAGGGTTCTGGCT 58.803 52.381 0.00 0.00 0.00 4.75
140 141 1.408405 GCTAGGGTTTAGGGTTCTGGC 60.408 57.143 0.00 0.00 0.00 4.85
141 142 1.134491 CGCTAGGGTTTAGGGTTCTGG 60.134 57.143 0.00 0.00 0.00 3.86
142 143 1.742750 GCGCTAGGGTTTAGGGTTCTG 60.743 57.143 8.77 0.00 0.00 3.02
143 144 0.540454 GCGCTAGGGTTTAGGGTTCT 59.460 55.000 8.77 0.00 0.00 3.01
144 145 0.463295 GGCGCTAGGGTTTAGGGTTC 60.463 60.000 7.64 0.00 0.00 3.62
145 146 0.912968 AGGCGCTAGGGTTTAGGGTT 60.913 55.000 7.64 0.00 0.00 4.11
146 147 1.306739 AGGCGCTAGGGTTTAGGGT 60.307 57.895 7.64 0.00 0.00 4.34
147 148 1.049289 AGAGGCGCTAGGGTTTAGGG 61.049 60.000 7.64 0.00 0.00 3.53
148 149 0.389757 GAGAGGCGCTAGGGTTTAGG 59.610 60.000 7.64 0.00 0.00 2.69
149 150 1.112113 TGAGAGGCGCTAGGGTTTAG 58.888 55.000 7.64 0.00 0.00 1.85
150 151 0.822164 GTGAGAGGCGCTAGGGTTTA 59.178 55.000 7.64 0.00 0.00 2.01
151 152 1.597461 GTGAGAGGCGCTAGGGTTT 59.403 57.895 7.64 0.00 0.00 3.27
152 153 2.359967 GGTGAGAGGCGCTAGGGTT 61.360 63.158 7.64 0.00 0.00 4.11
153 154 2.760385 GGTGAGAGGCGCTAGGGT 60.760 66.667 7.64 0.00 0.00 4.34
154 155 2.759973 TGGTGAGAGGCGCTAGGG 60.760 66.667 7.64 1.65 0.00 3.53
155 156 2.496817 GTGGTGAGAGGCGCTAGG 59.503 66.667 7.64 0.00 0.00 3.02
156 157 2.496817 GGTGGTGAGAGGCGCTAG 59.503 66.667 7.64 0.00 0.00 3.42
157 158 3.449227 CGGTGGTGAGAGGCGCTA 61.449 66.667 7.64 0.00 0.00 4.26
182 183 4.933064 GTGATCGCGCGGGAGGAG 62.933 72.222 31.69 0.00 0.00 3.69
216 217 4.749310 AGAGGTTGAGCGCGGCTG 62.749 66.667 8.83 0.00 39.88 4.85
217 218 4.443266 GAGAGGTTGAGCGCGGCT 62.443 66.667 8.83 5.31 43.88 5.52
218 219 4.742201 TGAGAGGTTGAGCGCGGC 62.742 66.667 8.83 0.00 0.00 6.53
219 220 2.811317 GTGAGAGGTTGAGCGCGG 60.811 66.667 8.83 0.00 0.00 6.46
220 221 2.811317 GGTGAGAGGTTGAGCGCG 60.811 66.667 0.00 0.00 0.00 6.86
221 222 1.301716 TTGGTGAGAGGTTGAGCGC 60.302 57.895 0.00 0.00 0.00 5.92
222 223 0.951040 GGTTGGTGAGAGGTTGAGCG 60.951 60.000 0.00 0.00 0.00 5.03
223 224 0.606673 GGGTTGGTGAGAGGTTGAGC 60.607 60.000 0.00 0.00 0.00 4.26
224 225 0.764890 TGGGTTGGTGAGAGGTTGAG 59.235 55.000 0.00 0.00 0.00 3.02
225 226 0.472471 GTGGGTTGGTGAGAGGTTGA 59.528 55.000 0.00 0.00 0.00 3.18
226 227 0.537371 GGTGGGTTGGTGAGAGGTTG 60.537 60.000 0.00 0.00 0.00 3.77
227 228 0.697854 AGGTGGGTTGGTGAGAGGTT 60.698 55.000 0.00 0.00 0.00 3.50
228 229 1.073706 AGGTGGGTTGGTGAGAGGT 60.074 57.895 0.00 0.00 0.00 3.85
229 230 0.838122 AGAGGTGGGTTGGTGAGAGG 60.838 60.000 0.00 0.00 0.00 3.69
230 231 0.610687 GAGAGGTGGGTTGGTGAGAG 59.389 60.000 0.00 0.00 0.00 3.20
231 232 0.105194 TGAGAGGTGGGTTGGTGAGA 60.105 55.000 0.00 0.00 0.00 3.27
232 233 0.987294 ATGAGAGGTGGGTTGGTGAG 59.013 55.000 0.00 0.00 0.00 3.51
233 234 0.984230 GATGAGAGGTGGGTTGGTGA 59.016 55.000 0.00 0.00 0.00 4.02
234 235 0.035056 GGATGAGAGGTGGGTTGGTG 60.035 60.000 0.00 0.00 0.00 4.17
235 236 1.208165 GGGATGAGAGGTGGGTTGGT 61.208 60.000 0.00 0.00 0.00 3.67
236 237 0.916358 AGGGATGAGAGGTGGGTTGG 60.916 60.000 0.00 0.00 0.00 3.77
237 238 1.486726 GTAGGGATGAGAGGTGGGTTG 59.513 57.143 0.00 0.00 0.00 3.77
238 239 1.080498 TGTAGGGATGAGAGGTGGGTT 59.920 52.381 0.00 0.00 0.00 4.11
239 240 0.716591 TGTAGGGATGAGAGGTGGGT 59.283 55.000 0.00 0.00 0.00 4.51
240 241 1.486726 GTTGTAGGGATGAGAGGTGGG 59.513 57.143 0.00 0.00 0.00 4.61
241 242 1.486726 GGTTGTAGGGATGAGAGGTGG 59.513 57.143 0.00 0.00 0.00 4.61
242 243 2.472029 AGGTTGTAGGGATGAGAGGTG 58.528 52.381 0.00 0.00 0.00 4.00
243 244 2.950990 AGGTTGTAGGGATGAGAGGT 57.049 50.000 0.00 0.00 0.00 3.85
244 245 3.639094 CAGTAGGTTGTAGGGATGAGAGG 59.361 52.174 0.00 0.00 0.00 3.69
245 246 4.282496 ACAGTAGGTTGTAGGGATGAGAG 58.718 47.826 0.00 0.00 0.00 3.20
246 247 4.332683 ACAGTAGGTTGTAGGGATGAGA 57.667 45.455 0.00 0.00 0.00 3.27
258 259 1.677552 CGGGCCTCAACAGTAGGTT 59.322 57.895 0.84 0.00 41.47 3.50
259 260 2.291043 CCGGGCCTCAACAGTAGGT 61.291 63.158 0.84 0.00 36.43 3.08
260 261 2.291043 ACCGGGCCTCAACAGTAGG 61.291 63.158 6.32 0.00 37.17 3.18
261 262 1.079127 CACCGGGCCTCAACAGTAG 60.079 63.158 6.32 0.00 0.00 2.57
262 263 1.534476 TCACCGGGCCTCAACAGTA 60.534 57.895 6.32 0.00 0.00 2.74
263 264 2.847234 TCACCGGGCCTCAACAGT 60.847 61.111 6.32 0.00 0.00 3.55
264 265 2.358737 GTCACCGGGCCTCAACAG 60.359 66.667 6.32 0.00 0.00 3.16
265 266 3.948719 GGTCACCGGGCCTCAACA 61.949 66.667 6.32 0.00 0.00 3.33
266 267 4.717313 GGGTCACCGGGCCTCAAC 62.717 72.222 6.32 0.00 0.00 3.18
267 268 3.549433 TAGGGTCACCGGGCCTCAA 62.549 63.158 6.32 0.00 43.47 3.02
268 269 3.976490 CTAGGGTCACCGGGCCTCA 62.976 68.421 6.32 0.00 43.47 3.86
269 270 3.155167 CTAGGGTCACCGGGCCTC 61.155 72.222 6.32 0.00 43.47 4.70
272 273 3.851128 GAGCTAGGGTCACCGGGC 61.851 72.222 6.32 0.00 43.47 6.13
273 274 2.294170 TAGGAGCTAGGGTCACCGGG 62.294 65.000 6.32 0.00 43.47 5.73
274 275 1.108132 GTAGGAGCTAGGGTCACCGG 61.108 65.000 0.00 0.00 43.47 5.28
275 276 1.108132 GGTAGGAGCTAGGGTCACCG 61.108 65.000 0.00 0.00 43.47 4.94
276 277 0.032416 TGGTAGGAGCTAGGGTCACC 60.032 60.000 0.00 0.00 30.20 4.02
277 278 1.063867 TCTGGTAGGAGCTAGGGTCAC 60.064 57.143 0.00 0.00 0.00 3.67
278 279 1.305886 TCTGGTAGGAGCTAGGGTCA 58.694 55.000 0.00 0.00 0.00 4.02
279 280 2.456073 TTCTGGTAGGAGCTAGGGTC 57.544 55.000 0.00 0.00 0.00 4.46
280 281 2.683768 CATTCTGGTAGGAGCTAGGGT 58.316 52.381 0.00 0.00 0.00 4.34
281 282 1.974236 CCATTCTGGTAGGAGCTAGGG 59.026 57.143 0.00 0.00 31.35 3.53
282 283 1.974236 CCCATTCTGGTAGGAGCTAGG 59.026 57.143 0.00 0.00 35.17 3.02
283 284 2.630580 GTCCCATTCTGGTAGGAGCTAG 59.369 54.545 0.00 0.00 35.17 3.42
284 285 2.679082 GTCCCATTCTGGTAGGAGCTA 58.321 52.381 0.00 0.00 35.17 3.32
285 286 1.501582 GTCCCATTCTGGTAGGAGCT 58.498 55.000 0.00 0.00 35.17 4.09
286 287 0.470341 GGTCCCATTCTGGTAGGAGC 59.530 60.000 0.00 0.00 39.48 4.70
287 288 1.765314 CTGGTCCCATTCTGGTAGGAG 59.235 57.143 0.00 0.00 35.17 3.69
288 289 1.625228 CCTGGTCCCATTCTGGTAGGA 60.625 57.143 0.00 0.00 35.17 2.94
289 290 0.839946 CCTGGTCCCATTCTGGTAGG 59.160 60.000 0.00 0.00 35.17 3.18
290 291 1.879575 TCCTGGTCCCATTCTGGTAG 58.120 55.000 0.00 0.00 35.17 3.18
291 292 2.587060 ATCCTGGTCCCATTCTGGTA 57.413 50.000 0.00 0.00 35.17 3.25
292 293 1.686236 AATCCTGGTCCCATTCTGGT 58.314 50.000 0.00 0.00 35.17 4.00
293 294 2.780010 AGTAATCCTGGTCCCATTCTGG 59.220 50.000 0.00 0.00 37.25 3.86
294 295 4.510167 AAGTAATCCTGGTCCCATTCTG 57.490 45.455 0.00 0.00 0.00 3.02
295 296 7.082972 AGTATAAGTAATCCTGGTCCCATTCT 58.917 38.462 0.00 0.00 0.00 2.40
296 297 7.016268 TGAGTATAAGTAATCCTGGTCCCATTC 59.984 40.741 0.00 0.00 0.00 2.67
297 298 6.849697 TGAGTATAAGTAATCCTGGTCCCATT 59.150 38.462 0.00 0.00 0.00 3.16
298 299 6.390504 TGAGTATAAGTAATCCTGGTCCCAT 58.609 40.000 0.00 0.00 0.00 4.00
299 300 5.784023 TGAGTATAAGTAATCCTGGTCCCA 58.216 41.667 0.00 0.00 0.00 4.37
300 301 6.522946 GTTGAGTATAAGTAATCCTGGTCCC 58.477 44.000 0.00 0.00 0.00 4.46
301 302 6.040166 TCGTTGAGTATAAGTAATCCTGGTCC 59.960 42.308 0.00 0.00 0.00 4.46
302 303 7.035840 TCGTTGAGTATAAGTAATCCTGGTC 57.964 40.000 0.00 0.00 0.00 4.02
303 304 7.414222 TTCGTTGAGTATAAGTAATCCTGGT 57.586 36.000 0.00 0.00 0.00 4.00
304 305 8.361139 AGATTCGTTGAGTATAAGTAATCCTGG 58.639 37.037 0.00 0.00 0.00 4.45
305 306 9.186323 CAGATTCGTTGAGTATAAGTAATCCTG 57.814 37.037 0.00 0.00 0.00 3.86
306 307 8.915036 ACAGATTCGTTGAGTATAAGTAATCCT 58.085 33.333 0.00 0.00 0.00 3.24
307 308 8.969267 CACAGATTCGTTGAGTATAAGTAATCC 58.031 37.037 0.00 0.00 0.00 3.01
308 309 9.731819 TCACAGATTCGTTGAGTATAAGTAATC 57.268 33.333 0.00 0.00 0.00 1.75
310 311 9.350357 GTTCACAGATTCGTTGAGTATAAGTAA 57.650 33.333 0.00 0.00 0.00 2.24
311 312 8.517056 TGTTCACAGATTCGTTGAGTATAAGTA 58.483 33.333 0.00 0.00 0.00 2.24
312 313 7.375834 TGTTCACAGATTCGTTGAGTATAAGT 58.624 34.615 0.00 0.00 0.00 2.24
313 314 7.812309 TGTTCACAGATTCGTTGAGTATAAG 57.188 36.000 0.00 0.00 0.00 1.73
314 315 9.516314 CTATGTTCACAGATTCGTTGAGTATAA 57.484 33.333 0.00 0.00 0.00 0.98
315 316 8.683615 ACTATGTTCACAGATTCGTTGAGTATA 58.316 33.333 0.00 0.00 0.00 1.47
316 317 7.489435 CACTATGTTCACAGATTCGTTGAGTAT 59.511 37.037 0.00 0.00 0.00 2.12
317 318 6.806739 CACTATGTTCACAGATTCGTTGAGTA 59.193 38.462 0.00 0.00 0.00 2.59
318 319 5.635280 CACTATGTTCACAGATTCGTTGAGT 59.365 40.000 0.00 0.00 0.00 3.41
319 320 5.445142 GCACTATGTTCACAGATTCGTTGAG 60.445 44.000 0.00 0.00 0.00 3.02
320 321 4.388773 GCACTATGTTCACAGATTCGTTGA 59.611 41.667 0.00 0.00 0.00 3.18
321 322 4.389992 AGCACTATGTTCACAGATTCGTTG 59.610 41.667 0.00 0.00 0.00 4.10
322 323 4.569943 AGCACTATGTTCACAGATTCGTT 58.430 39.130 0.00 0.00 0.00 3.85
323 324 4.177026 GAGCACTATGTTCACAGATTCGT 58.823 43.478 0.00 0.00 0.00 3.85
324 325 4.176271 TGAGCACTATGTTCACAGATTCG 58.824 43.478 0.00 0.00 32.63 3.34
325 326 5.641209 AGTTGAGCACTATGTTCACAGATTC 59.359 40.000 0.00 0.00 37.33 2.52
326 327 5.410746 CAGTTGAGCACTATGTTCACAGATT 59.589 40.000 0.00 0.00 37.33 2.40
327 328 4.934001 CAGTTGAGCACTATGTTCACAGAT 59.066 41.667 0.00 0.00 37.33 2.90
328 329 4.039124 TCAGTTGAGCACTATGTTCACAGA 59.961 41.667 0.00 0.00 37.33 3.41
329 330 4.309933 TCAGTTGAGCACTATGTTCACAG 58.690 43.478 0.00 0.00 37.33 3.66
330 331 4.335400 TCAGTTGAGCACTATGTTCACA 57.665 40.909 0.00 0.00 37.33 3.58
331 332 4.752101 AGTTCAGTTGAGCACTATGTTCAC 59.248 41.667 0.00 0.00 37.33 3.18
332 333 4.960938 AGTTCAGTTGAGCACTATGTTCA 58.039 39.130 0.00 0.00 35.80 3.18
333 334 5.237344 ACAAGTTCAGTTGAGCACTATGTTC 59.763 40.000 1.25 0.00 32.76 3.18
334 335 5.126067 ACAAGTTCAGTTGAGCACTATGTT 58.874 37.500 1.25 0.00 32.76 2.71
335 336 4.708177 ACAAGTTCAGTTGAGCACTATGT 58.292 39.130 1.25 0.00 32.76 2.29
336 337 4.993584 AGACAAGTTCAGTTGAGCACTATG 59.006 41.667 1.25 0.00 32.76 2.23
337 338 5.220710 AGACAAGTTCAGTTGAGCACTAT 57.779 39.130 1.25 0.00 32.76 2.12
338 339 4.672587 AGACAAGTTCAGTTGAGCACTA 57.327 40.909 1.25 0.00 32.76 2.74
339 340 3.550437 AGACAAGTTCAGTTGAGCACT 57.450 42.857 1.25 0.00 35.35 4.40
340 341 4.346129 CAAAGACAAGTTCAGTTGAGCAC 58.654 43.478 1.25 0.00 0.00 4.40
341 342 3.181497 GCAAAGACAAGTTCAGTTGAGCA 60.181 43.478 1.25 0.00 0.00 4.26
342 343 3.065925 AGCAAAGACAAGTTCAGTTGAGC 59.934 43.478 1.25 0.00 0.00 4.26
343 344 4.260948 GGAGCAAAGACAAGTTCAGTTGAG 60.261 45.833 1.25 0.00 0.00 3.02
344 345 3.627577 GGAGCAAAGACAAGTTCAGTTGA 59.372 43.478 1.25 0.00 0.00 3.18
345 346 3.546815 CGGAGCAAAGACAAGTTCAGTTG 60.547 47.826 0.00 0.00 0.00 3.16
351 352 2.052782 AACCGGAGCAAAGACAAGTT 57.947 45.000 9.46 0.00 0.00 2.66
365 366 2.202756 GCCGAGAGCTGTAACCGG 60.203 66.667 0.00 0.00 42.74 5.28
366 367 2.202756 GGCCGAGAGCTGTAACCG 60.203 66.667 0.00 0.00 43.05 4.44
382 383 2.278206 CGAGATCGGTGCACTCGG 60.278 66.667 17.98 6.78 46.10 4.63
473 474 2.746277 GCAGCGGACGGTCCAATT 60.746 61.111 25.80 8.45 35.91 2.32
474 475 3.706373 AGCAGCGGACGGTCCAAT 61.706 61.111 25.80 11.33 35.91 3.16
494 495 5.581605 CACGCACCTTGAATTGCTATTTAT 58.418 37.500 0.00 0.00 36.54 1.40
495 496 4.674101 GCACGCACCTTGAATTGCTATTTA 60.674 41.667 0.00 0.00 36.54 1.40
541 542 7.969314 TGATTTTGTGCTTTGGTTTAAAAGTC 58.031 30.769 0.00 0.00 39.02 3.01
633 635 7.807907 CCATATTTTCTTTAATGCACGGGATAC 59.192 37.037 0.00 0.00 0.00 2.24
641 643 7.148672 CGTGCAAACCATATTTTCTTTAATGCA 60.149 33.333 0.00 0.00 36.65 3.96
649 651 3.823873 TCACCGTGCAAACCATATTTTCT 59.176 39.130 0.00 0.00 0.00 2.52
650 652 3.917985 GTCACCGTGCAAACCATATTTTC 59.082 43.478 0.00 0.00 0.00 2.29
707 709 5.868801 CGTGTGGCAAATAATGAAGGATTTT 59.131 36.000 0.00 0.00 0.00 1.82
716 718 1.815613 TGGTCCGTGTGGCAAATAATG 59.184 47.619 0.00 0.00 34.14 1.90
731 733 2.032681 GCTGACAGGTGGTGGTCC 59.967 66.667 4.26 0.00 33.09 4.46
791 793 3.308402 CCTGACAATAAAGAGGAGCCCAA 60.308 47.826 0.00 0.00 0.00 4.12
920 923 1.224069 CGTGTGCTCTTGTGAGTGGG 61.224 60.000 0.00 0.00 42.13 4.61
1034 1037 0.250038 TCTGACACTGGTTCTGCTGC 60.250 55.000 0.00 0.00 0.00 5.25
1064 1067 1.400629 CCATCTTGCGCTCAACTTGTG 60.401 52.381 9.73 0.00 0.00 3.33
1260 1302 3.150949 CCAGTGGTCTGCTGGTGA 58.849 61.111 0.00 0.00 46.22 4.02
1269 1311 1.745489 GCCGGTCATTCCAGTGGTC 60.745 63.158 9.54 0.00 35.57 4.02
1377 1419 5.955961 TGTCCTTGATCTTGTCCATGATA 57.044 39.130 0.00 0.00 0.00 2.15
1453 1511 7.451566 GGTGGAAGTTGGCCATCTTATTATATT 59.548 37.037 25.58 4.70 37.81 1.28
1505 1563 2.440539 ACGACCAAGTGAGCTAGTTG 57.559 50.000 0.00 0.00 39.06 3.16
1525 1583 4.463891 CCATGAAAGCTTAAACCCAGATGT 59.536 41.667 0.00 0.00 0.00 3.06
1571 1646 9.371136 TCAAAGTATGCAAATTGTAAACAAACA 57.629 25.926 0.00 0.00 39.55 2.83
1653 1729 4.510167 ATTTTGGGACAGAGGGAGTATG 57.490 45.455 0.00 0.00 42.39 2.39
1657 1733 4.263506 ACACTTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
1658 1734 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
1659 1735 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
1660 1736 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
1662 1738 5.560722 TGAGACACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
1663 1739 5.765182 AGTTGAGACACTTATTTTGGGACAG 59.235 40.000 0.00 0.00 42.39 3.51
1664 1740 5.690865 AGTTGAGACACTTATTTTGGGACA 58.309 37.500 0.00 0.00 0.00 4.02
1665 1741 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1666 1742 6.460953 GCAAAGTTGAGACACTTATTTTGGGA 60.461 38.462 0.00 0.00 35.87 4.37
1667 1743 5.691754 GCAAAGTTGAGACACTTATTTTGGG 59.308 40.000 0.00 0.00 35.87 4.12
1668 1744 6.198966 GTGCAAAGTTGAGACACTTATTTTGG 59.801 38.462 0.00 0.00 35.87 3.28
1669 1745 6.974622 AGTGCAAAGTTGAGACACTTATTTTG 59.025 34.615 0.00 0.00 38.38 2.44
1670 1746 7.100458 AGTGCAAAGTTGAGACACTTATTTT 57.900 32.000 0.00 0.00 38.38 1.82
1671 1747 6.699575 AGTGCAAAGTTGAGACACTTATTT 57.300 33.333 0.00 0.00 38.38 1.40
1672 1748 7.499232 AGTTAGTGCAAAGTTGAGACACTTATT 59.501 33.333 7.72 0.00 41.56 1.40
1673 1749 6.992715 AGTTAGTGCAAAGTTGAGACACTTAT 59.007 34.615 7.72 0.00 41.56 1.73
1674 1750 6.346096 AGTTAGTGCAAAGTTGAGACACTTA 58.654 36.000 7.72 0.00 41.56 2.24
1675 1751 5.186198 AGTTAGTGCAAAGTTGAGACACTT 58.814 37.500 7.72 0.00 41.56 3.16
1676 1752 4.770795 AGTTAGTGCAAAGTTGAGACACT 58.229 39.130 0.00 0.00 43.60 3.55
1677 1753 5.485662 AAGTTAGTGCAAAGTTGAGACAC 57.514 39.130 0.00 0.00 0.00 3.67
1678 1754 6.821665 ACTAAAGTTAGTGCAAAGTTGAGACA 59.178 34.615 9.27 0.00 42.13 3.41
1679 1755 7.247929 ACTAAAGTTAGTGCAAAGTTGAGAC 57.752 36.000 9.27 0.00 42.13 3.36
1680 1756 8.361592 GTACTAAAGTTAGTGCAAAGTTGAGA 57.638 34.615 12.92 0.00 43.22 3.27
1716 1792 9.629878 TGTCCCAAAATAAGTGTCTTAACTTTA 57.370 29.630 0.00 0.00 40.77 1.85
1717 1793 8.528044 TGTCCCAAAATAAGTGTCTTAACTTT 57.472 30.769 0.00 0.00 40.77 2.66
1718 1794 7.996644 TCTGTCCCAAAATAAGTGTCTTAACTT 59.003 33.333 0.00 0.00 42.89 2.66
1719 1795 7.514721 TCTGTCCCAAAATAAGTGTCTTAACT 58.485 34.615 0.00 0.00 0.00 2.24
1720 1796 7.094762 CCTCTGTCCCAAAATAAGTGTCTTAAC 60.095 40.741 0.00 0.00 0.00 2.01
1721 1797 6.940298 CCTCTGTCCCAAAATAAGTGTCTTAA 59.060 38.462 0.00 0.00 0.00 1.85
1722 1798 6.271391 TCCTCTGTCCCAAAATAAGTGTCTTA 59.729 38.462 0.00 0.00 0.00 2.10
1723 1799 5.073144 TCCTCTGTCCCAAAATAAGTGTCTT 59.927 40.000 0.00 0.00 0.00 3.01
1724 1800 4.597507 TCCTCTGTCCCAAAATAAGTGTCT 59.402 41.667 0.00 0.00 0.00 3.41
1725 1801 4.906618 TCCTCTGTCCCAAAATAAGTGTC 58.093 43.478 0.00 0.00 0.00 3.67
1726 1802 4.993705 TCCTCTGTCCCAAAATAAGTGT 57.006 40.909 0.00 0.00 0.00 3.55
1727 1803 5.316987 ACTTCCTCTGTCCCAAAATAAGTG 58.683 41.667 0.00 0.00 0.00 3.16
1728 1804 5.584551 ACTTCCTCTGTCCCAAAATAAGT 57.415 39.130 0.00 0.00 0.00 2.24
1729 1805 9.331282 CTTATACTTCCTCTGTCCCAAAATAAG 57.669 37.037 0.00 0.00 0.00 1.73
1730 1806 7.773690 GCTTATACTTCCTCTGTCCCAAAATAA 59.226 37.037 0.00 0.00 0.00 1.40
1731 1807 7.092623 TGCTTATACTTCCTCTGTCCCAAAATA 60.093 37.037 0.00 0.00 0.00 1.40
1732 1808 6.122964 GCTTATACTTCCTCTGTCCCAAAAT 58.877 40.000 0.00 0.00 0.00 1.82
1733 1809 5.013704 TGCTTATACTTCCTCTGTCCCAAAA 59.986 40.000 0.00 0.00 0.00 2.44
1734 1810 4.534500 TGCTTATACTTCCTCTGTCCCAAA 59.466 41.667 0.00 0.00 0.00 3.28
1735 1811 4.101114 TGCTTATACTTCCTCTGTCCCAA 58.899 43.478 0.00 0.00 0.00 4.12
1736 1812 3.719871 TGCTTATACTTCCTCTGTCCCA 58.280 45.455 0.00 0.00 0.00 4.37
1737 1813 4.755266 TTGCTTATACTTCCTCTGTCCC 57.245 45.455 0.00 0.00 0.00 4.46
1738 1814 6.116126 ACATTTGCTTATACTTCCTCTGTCC 58.884 40.000 0.00 0.00 0.00 4.02
1739 1815 7.617041 AACATTTGCTTATACTTCCTCTGTC 57.383 36.000 0.00 0.00 0.00 3.51
1740 1816 9.167311 CTTAACATTTGCTTATACTTCCTCTGT 57.833 33.333 0.00 0.00 0.00 3.41
1741 1817 9.167311 ACTTAACATTTGCTTATACTTCCTCTG 57.833 33.333 0.00 0.00 0.00 3.35
1742 1818 9.740710 AACTTAACATTTGCTTATACTTCCTCT 57.259 29.630 0.00 0.00 0.00 3.69
1880 1958 2.097825 GTTGATCATCCTTGCTTGCCT 58.902 47.619 0.00 0.00 0.00 4.75
1881 1959 1.202222 CGTTGATCATCCTTGCTTGCC 60.202 52.381 0.00 0.00 0.00 4.52
1909 1987 3.009253 GCCTTCCTCCTCATCATCATCAT 59.991 47.826 0.00 0.00 0.00 2.45
1922 2000 1.077858 CAGCTTCCTGCCTTCCTCC 60.078 63.158 0.00 0.00 44.23 4.30
1968 2061 1.002888 CTTGTCTGTGCTGTCCTCCAT 59.997 52.381 0.00 0.00 0.00 3.41
1975 2068 1.605710 GCATTGACTTGTCTGTGCTGT 59.394 47.619 17.12 0.00 0.00 4.40
1976 2069 1.878088 AGCATTGACTTGTCTGTGCTG 59.122 47.619 22.36 7.80 40.99 4.41
1981 2074 4.778534 AATTGGAGCATTGACTTGTCTG 57.221 40.909 2.35 0.00 0.00 3.51
2169 2263 3.194861 TCATATGGTCTGTTTAGTGCGC 58.805 45.455 0.00 0.00 0.00 6.09
2183 2281 6.417635 GTGCACGTCCAATTATTTTCATATGG 59.582 38.462 0.00 0.00 0.00 2.74
2200 2298 5.861251 TGGAAAATCATAATTTGTGCACGTC 59.139 36.000 13.13 0.00 35.27 4.34
2205 2303 9.970395 TCATCTATGGAAAATCATAATTTGTGC 57.030 29.630 0.00 0.00 35.27 4.57
2219 2317 9.246670 CAATGCCCTATAAATCATCTATGGAAA 57.753 33.333 0.00 0.00 0.00 3.13
2239 2337 5.048364 TGGACTGTTTATGTACAACAATGCC 60.048 40.000 0.00 2.66 33.74 4.40
2241 2339 8.726068 TGTATGGACTGTTTATGTACAACAATG 58.274 33.333 0.00 0.00 33.74 2.82
2366 2464 0.318120 TCGTCGGGGACAAACTTACC 59.682 55.000 0.00 0.00 32.09 2.85
2372 2470 1.823169 CTCCCTTCGTCGGGGACAAA 61.823 60.000 5.25 0.00 46.99 2.83
2433 2531 2.842936 CCTTCCTATCGGCGGGGT 60.843 66.667 7.21 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.