Multiple sequence alignment - TraesCS7D01G543600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G543600 chr7D 100.000 2520 0 0 1 2520 631947149 631944630 0.000000e+00 4654.0
1 TraesCS7D01G543600 chr7D 93.023 43 3 0 494 536 41935264 41935306 2.090000e-06 63.9
2 TraesCS7D01G543600 chr7D 93.023 43 3 0 494 536 427888554 427888596 2.090000e-06 63.9
3 TraesCS7D01G543600 chr7A 94.002 867 34 12 1663 2520 736457986 736458843 0.000000e+00 1297.0
4 TraesCS7D01G543600 chr7A 90.541 962 63 23 692 1633 736457036 736457989 0.000000e+00 1247.0
5 TraesCS7D01G543600 chr7A 79.200 500 77 13 1088 1576 720784449 720783966 3.130000e-84 322.0
6 TraesCS7D01G543600 chr7A 95.918 49 2 0 531 579 736456989 736457037 2.080000e-11 80.5
7 TraesCS7D01G543600 chr7A 88.889 54 3 1 486 536 454053297 454053244 2.090000e-06 63.9
8 TraesCS7D01G543600 chr5B 97.674 43 1 0 494 536 658642935 658642893 9.670000e-10 75.0
9 TraesCS7D01G543600 chr3D 97.674 43 1 0 494 536 5616124 5616166 9.670000e-10 75.0
10 TraesCS7D01G543600 chr2A 88.525 61 5 2 184 244 469195298 469195240 3.480000e-09 73.1
11 TraesCS7D01G543600 chr1A 97.619 42 1 0 495 536 579845865 579845906 3.480000e-09 73.1
12 TraesCS7D01G543600 chr5D 97.436 39 1 0 494 532 519812110 519812148 1.620000e-07 67.6
13 TraesCS7D01G543600 chr4A 91.837 49 3 1 483 530 576578741 576578789 1.620000e-07 67.6
14 TraesCS7D01G543600 chr1D 97.368 38 1 0 496 533 199455682 199455719 5.820000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G543600 chr7D 631944630 631947149 2519 True 4654.000000 4654 100.000 1 2520 1 chr7D.!!$R1 2519
1 TraesCS7D01G543600 chr7A 736456989 736458843 1854 False 874.833333 1297 93.487 531 2520 3 chr7A.!!$F1 1989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.031178 GTGGTGAGTGCAGCCTTTTG 59.969 55.0 0.0 0.0 41.74 2.44 F
369 370 0.041312 CGCACCAAACGACTTTCCTG 60.041 55.0 0.0 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1306 1338 0.179158 GACCTCGGCGAAGAAGAGTC 60.179 60.0 13.21 8.09 32.28 3.36 R
2225 2265 0.250124 GTGACACACGGGTTGGATGA 60.250 55.0 0.00 0.00 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.244616 AGTGGTGAGTGCAGCCTT 58.755 55.556 0.00 0.00 41.74 4.35
18 19 1.533711 AGTGGTGAGTGCAGCCTTT 59.466 52.632 0.00 0.00 41.74 3.11
19 20 0.106519 AGTGGTGAGTGCAGCCTTTT 60.107 50.000 0.00 0.00 41.74 2.27
20 21 0.031178 GTGGTGAGTGCAGCCTTTTG 59.969 55.000 0.00 0.00 41.74 2.44
21 22 0.106769 TGGTGAGTGCAGCCTTTTGA 60.107 50.000 0.00 0.00 41.74 2.69
22 23 1.251251 GGTGAGTGCAGCCTTTTGAT 58.749 50.000 0.00 0.00 36.54 2.57
23 24 1.615392 GGTGAGTGCAGCCTTTTGATT 59.385 47.619 0.00 0.00 36.54 2.57
24 25 2.608752 GGTGAGTGCAGCCTTTTGATTG 60.609 50.000 0.00 0.00 36.54 2.67
25 26 2.294233 GTGAGTGCAGCCTTTTGATTGA 59.706 45.455 0.00 0.00 0.00 2.57
26 27 2.957680 TGAGTGCAGCCTTTTGATTGAA 59.042 40.909 0.00 0.00 0.00 2.69
27 28 3.384146 TGAGTGCAGCCTTTTGATTGAAA 59.616 39.130 0.00 0.00 0.00 2.69
28 29 4.141981 TGAGTGCAGCCTTTTGATTGAAAA 60.142 37.500 0.00 0.00 32.44 2.29
29 30 4.768583 AGTGCAGCCTTTTGATTGAAAAA 58.231 34.783 0.00 0.00 33.04 1.94
30 31 5.370679 AGTGCAGCCTTTTGATTGAAAAAT 58.629 33.333 0.00 0.00 33.04 1.82
31 32 5.824097 AGTGCAGCCTTTTGATTGAAAAATT 59.176 32.000 0.00 0.00 33.04 1.82
32 33 6.991531 AGTGCAGCCTTTTGATTGAAAAATTA 59.008 30.769 0.00 0.00 33.04 1.40
33 34 7.041848 AGTGCAGCCTTTTGATTGAAAAATTAC 60.042 33.333 0.00 0.00 33.04 1.89
34 35 6.765036 TGCAGCCTTTTGATTGAAAAATTACA 59.235 30.769 0.00 0.00 33.04 2.41
35 36 7.444792 TGCAGCCTTTTGATTGAAAAATTACAT 59.555 29.630 0.00 0.00 33.04 2.29
36 37 8.291740 GCAGCCTTTTGATTGAAAAATTACATT 58.708 29.630 0.00 0.00 33.04 2.71
72 73 8.586570 AAACAATTCTGAAAAATACGCATTCA 57.413 26.923 0.00 0.00 0.00 2.57
73 74 7.566858 ACAATTCTGAAAAATACGCATTCAC 57.433 32.000 0.00 0.00 0.00 3.18
74 75 7.144661 ACAATTCTGAAAAATACGCATTCACA 58.855 30.769 0.00 0.00 0.00 3.58
75 76 7.814107 ACAATTCTGAAAAATACGCATTCACAT 59.186 29.630 0.00 0.00 0.00 3.21
76 77 9.288124 CAATTCTGAAAAATACGCATTCACATA 57.712 29.630 0.00 0.00 0.00 2.29
78 79 8.839947 TTCTGAAAAATACGCATTCACATATG 57.160 30.769 0.00 0.00 0.00 1.78
79 80 7.416817 TCTGAAAAATACGCATTCACATATGG 58.583 34.615 7.80 0.00 0.00 2.74
80 81 7.281999 TCTGAAAAATACGCATTCACATATGGA 59.718 33.333 7.80 0.00 0.00 3.41
81 82 7.939782 TGAAAAATACGCATTCACATATGGAT 58.060 30.769 7.80 0.00 0.00 3.41
82 83 9.061435 TGAAAAATACGCATTCACATATGGATA 57.939 29.630 7.80 0.00 0.00 2.59
112 113 9.337396 ACTAAATGTGTGAAAGTTGTAATCAGA 57.663 29.630 0.00 0.00 0.00 3.27
115 116 9.868277 AAATGTGTGAAAGTTGTAATCAGAAAA 57.132 25.926 0.00 0.00 0.00 2.29
118 119 9.944663 TGTGTGAAAGTTGTAATCAGAAAATAC 57.055 29.630 0.00 0.00 0.00 1.89
119 120 9.944663 GTGTGAAAGTTGTAATCAGAAAATACA 57.055 29.630 0.00 0.00 0.00 2.29
132 133 7.742556 TCAGAAAATACAATGACATGTGACA 57.257 32.000 1.15 0.00 34.75 3.58
133 134 8.339344 TCAGAAAATACAATGACATGTGACAT 57.661 30.769 1.15 0.00 34.75 3.06
134 135 8.238631 TCAGAAAATACAATGACATGTGACATG 58.761 33.333 22.97 22.97 34.75 3.21
135 136 7.008901 CAGAAAATACAATGACATGTGACATGC 59.991 37.037 24.32 17.05 34.75 4.06
136 137 5.900865 AATACAATGACATGTGACATGCA 57.099 34.783 24.32 21.51 34.75 3.96
146 147 1.986698 GTGACATGCACAAGAATGCC 58.013 50.000 13.27 0.00 46.91 4.40
147 148 1.270274 GTGACATGCACAAGAATGCCA 59.730 47.619 13.27 0.00 46.91 4.92
148 149 1.962100 TGACATGCACAAGAATGCCAA 59.038 42.857 0.00 0.00 45.50 4.52
149 150 2.364647 TGACATGCACAAGAATGCCAAA 59.635 40.909 0.00 0.00 45.50 3.28
150 151 3.007074 TGACATGCACAAGAATGCCAAAT 59.993 39.130 0.00 0.00 45.50 2.32
151 152 3.998341 GACATGCACAAGAATGCCAAATT 59.002 39.130 0.00 0.00 45.50 1.82
152 153 3.749088 ACATGCACAAGAATGCCAAATTG 59.251 39.130 0.00 0.00 45.50 2.32
153 154 2.144730 TGCACAAGAATGCCAAATTGC 58.855 42.857 0.00 0.00 45.50 3.56
154 155 1.127213 GCACAAGAATGCCAAATTGCG 59.873 47.619 0.00 0.00 39.86 4.85
155 156 2.674954 CACAAGAATGCCAAATTGCGA 58.325 42.857 0.00 0.00 0.00 5.10
156 157 3.255725 CACAAGAATGCCAAATTGCGAT 58.744 40.909 0.00 0.00 0.00 4.58
157 158 3.061563 CACAAGAATGCCAAATTGCGATG 59.938 43.478 0.00 0.00 0.00 3.84
158 159 3.255725 CAAGAATGCCAAATTGCGATGT 58.744 40.909 0.00 0.00 0.00 3.06
159 160 4.082300 ACAAGAATGCCAAATTGCGATGTA 60.082 37.500 0.00 0.00 0.00 2.29
160 161 4.032703 AGAATGCCAAATTGCGATGTAC 57.967 40.909 0.00 0.00 0.00 2.90
161 162 3.696051 AGAATGCCAAATTGCGATGTACT 59.304 39.130 0.00 0.00 0.00 2.73
162 163 4.158394 AGAATGCCAAATTGCGATGTACTT 59.842 37.500 0.00 0.00 0.00 2.24
163 164 3.485947 TGCCAAATTGCGATGTACTTC 57.514 42.857 0.00 0.00 0.00 3.01
164 165 3.081061 TGCCAAATTGCGATGTACTTCT 58.919 40.909 7.13 0.00 0.00 2.85
165 166 3.126858 TGCCAAATTGCGATGTACTTCTC 59.873 43.478 7.13 0.00 0.00 2.87
166 167 3.126858 GCCAAATTGCGATGTACTTCTCA 59.873 43.478 7.13 2.59 0.00 3.27
167 168 4.651994 CCAAATTGCGATGTACTTCTCAC 58.348 43.478 7.13 0.00 0.00 3.51
168 169 4.393062 CCAAATTGCGATGTACTTCTCACT 59.607 41.667 7.13 0.00 0.00 3.41
169 170 5.580691 CCAAATTGCGATGTACTTCTCACTA 59.419 40.000 7.13 0.00 0.00 2.74
170 171 6.455646 CCAAATTGCGATGTACTTCTCACTAC 60.456 42.308 7.13 0.00 0.00 2.73
171 172 4.776795 TTGCGATGTACTTCTCACTACA 57.223 40.909 7.13 0.00 0.00 2.74
172 173 4.776795 TGCGATGTACTTCTCACTACAA 57.223 40.909 7.13 0.00 0.00 2.41
173 174 5.128992 TGCGATGTACTTCTCACTACAAA 57.871 39.130 7.13 0.00 0.00 2.83
174 175 5.534407 TGCGATGTACTTCTCACTACAAAA 58.466 37.500 7.13 0.00 0.00 2.44
175 176 5.986741 TGCGATGTACTTCTCACTACAAAAA 59.013 36.000 7.13 0.00 0.00 1.94
176 177 6.649141 TGCGATGTACTTCTCACTACAAAAAT 59.351 34.615 7.13 0.00 0.00 1.82
177 178 7.148639 TGCGATGTACTTCTCACTACAAAAATC 60.149 37.037 7.13 0.00 0.00 2.17
178 179 7.674240 GCGATGTACTTCTCACTACAAAAATCC 60.674 40.741 7.13 0.00 0.00 3.01
179 180 7.201530 CGATGTACTTCTCACTACAAAAATCCC 60.202 40.741 7.13 0.00 0.00 3.85
180 181 6.235664 TGTACTTCTCACTACAAAAATCCCC 58.764 40.000 0.00 0.00 0.00 4.81
181 182 4.663334 ACTTCTCACTACAAAAATCCCCC 58.337 43.478 0.00 0.00 0.00 5.40
182 183 4.105697 ACTTCTCACTACAAAAATCCCCCA 59.894 41.667 0.00 0.00 0.00 4.96
183 184 4.733077 TCTCACTACAAAAATCCCCCAA 57.267 40.909 0.00 0.00 0.00 4.12
184 185 4.403734 TCTCACTACAAAAATCCCCCAAC 58.596 43.478 0.00 0.00 0.00 3.77
185 186 4.141135 TCTCACTACAAAAATCCCCCAACA 60.141 41.667 0.00 0.00 0.00 3.33
186 187 4.547671 TCACTACAAAAATCCCCCAACAA 58.452 39.130 0.00 0.00 0.00 2.83
187 188 5.151454 TCACTACAAAAATCCCCCAACAAT 58.849 37.500 0.00 0.00 0.00 2.71
188 189 5.604650 TCACTACAAAAATCCCCCAACAATT 59.395 36.000 0.00 0.00 0.00 2.32
189 190 6.100424 TCACTACAAAAATCCCCCAACAATTT 59.900 34.615 0.00 0.00 0.00 1.82
190 191 6.770303 CACTACAAAAATCCCCCAACAATTTT 59.230 34.615 0.00 0.00 34.86 1.82
191 192 6.995686 ACTACAAAAATCCCCCAACAATTTTC 59.004 34.615 0.00 0.00 32.84 2.29
192 193 5.760131 ACAAAAATCCCCCAACAATTTTCA 58.240 33.333 0.00 0.00 32.84 2.69
193 194 5.592282 ACAAAAATCCCCCAACAATTTTCAC 59.408 36.000 0.00 0.00 32.84 3.18
194 195 5.645056 AAAATCCCCCAACAATTTTCACT 57.355 34.783 0.00 0.00 28.99 3.41
195 196 5.645056 AAATCCCCCAACAATTTTCACTT 57.355 34.783 0.00 0.00 0.00 3.16
196 197 5.645056 AATCCCCCAACAATTTTCACTTT 57.355 34.783 0.00 0.00 0.00 2.66
197 198 5.645056 ATCCCCCAACAATTTTCACTTTT 57.355 34.783 0.00 0.00 0.00 2.27
198 199 5.443230 TCCCCCAACAATTTTCACTTTTT 57.557 34.783 0.00 0.00 0.00 1.94
217 218 4.811555 TTTTGTGTAGCTCATGTGTCAC 57.188 40.909 0.00 0.00 0.00 3.67
218 219 3.751479 TTGTGTAGCTCATGTGTCACT 57.249 42.857 4.27 1.93 0.00 3.41
219 220 3.030668 TGTGTAGCTCATGTGTCACTG 57.969 47.619 4.27 0.66 0.00 3.66
220 221 2.365293 TGTGTAGCTCATGTGTCACTGT 59.635 45.455 4.27 0.00 0.00 3.55
221 222 3.572255 TGTGTAGCTCATGTGTCACTGTA 59.428 43.478 4.27 0.00 0.00 2.74
222 223 4.220602 TGTGTAGCTCATGTGTCACTGTAT 59.779 41.667 4.27 0.00 0.00 2.29
223 224 5.171476 GTGTAGCTCATGTGTCACTGTATT 58.829 41.667 4.27 0.00 0.00 1.89
224 225 5.639506 GTGTAGCTCATGTGTCACTGTATTT 59.360 40.000 4.27 0.00 0.00 1.40
225 226 6.147821 GTGTAGCTCATGTGTCACTGTATTTT 59.852 38.462 4.27 0.00 0.00 1.82
226 227 5.869753 AGCTCATGTGTCACTGTATTTTC 57.130 39.130 4.27 0.00 0.00 2.29
227 228 4.389992 AGCTCATGTGTCACTGTATTTTCG 59.610 41.667 4.27 0.00 0.00 3.46
228 229 4.641954 CTCATGTGTCACTGTATTTTCGC 58.358 43.478 4.27 0.00 0.00 4.70
229 230 4.061596 TCATGTGTCACTGTATTTTCGCA 58.938 39.130 4.27 0.00 0.00 5.10
230 231 4.694982 TCATGTGTCACTGTATTTTCGCAT 59.305 37.500 4.27 0.00 0.00 4.73
231 232 4.403015 TGTGTCACTGTATTTTCGCATG 57.597 40.909 4.27 0.00 0.00 4.06
232 233 4.061596 TGTGTCACTGTATTTTCGCATGA 58.938 39.130 4.27 0.00 0.00 3.07
233 234 4.513318 TGTGTCACTGTATTTTCGCATGAA 59.487 37.500 4.27 0.00 0.00 2.57
234 235 5.181056 TGTGTCACTGTATTTTCGCATGAAT 59.819 36.000 4.27 0.00 33.20 2.57
235 236 6.370166 TGTGTCACTGTATTTTCGCATGAATA 59.630 34.615 4.27 0.00 33.20 1.75
236 237 7.065683 TGTGTCACTGTATTTTCGCATGAATAT 59.934 33.333 4.27 0.00 33.20 1.28
237 238 7.910162 GTGTCACTGTATTTTCGCATGAATATT 59.090 33.333 0.00 0.00 33.20 1.28
238 239 8.458052 TGTCACTGTATTTTCGCATGAATATTT 58.542 29.630 0.00 0.00 33.20 1.40
239 240 9.289303 GTCACTGTATTTTCGCATGAATATTTT 57.711 29.630 0.00 0.00 33.20 1.82
240 241 9.502145 TCACTGTATTTTCGCATGAATATTTTC 57.498 29.630 0.00 0.00 33.20 2.29
241 242 9.288124 CACTGTATTTTCGCATGAATATTTTCA 57.712 29.630 0.00 0.87 45.57 2.69
242 243 9.289303 ACTGTATTTTCGCATGAATATTTTCAC 57.711 29.630 0.00 0.00 44.36 3.18
243 244 9.288124 CTGTATTTTCGCATGAATATTTTCACA 57.712 29.630 0.00 0.00 44.36 3.58
244 245 9.071221 TGTATTTTCGCATGAATATTTTCACAC 57.929 29.630 0.00 0.00 44.36 3.82
245 246 9.071221 GTATTTTCGCATGAATATTTTCACACA 57.929 29.630 0.00 0.00 44.36 3.72
246 247 8.706492 ATTTTCGCATGAATATTTTCACACAT 57.294 26.923 0.00 0.00 44.36 3.21
247 248 7.509050 TTTCGCATGAATATTTTCACACATG 57.491 32.000 0.00 0.00 44.36 3.21
248 249 6.193514 TCGCATGAATATTTTCACACATGT 57.806 33.333 0.00 0.00 44.36 3.21
249 250 7.313951 TCGCATGAATATTTTCACACATGTA 57.686 32.000 0.00 0.00 44.36 2.29
250 251 7.929159 TCGCATGAATATTTTCACACATGTAT 58.071 30.769 0.00 0.00 44.36 2.29
251 252 8.404765 TCGCATGAATATTTTCACACATGTATT 58.595 29.630 0.00 0.00 44.36 1.89
252 253 8.473796 CGCATGAATATTTTCACACATGTATTG 58.526 33.333 0.00 0.00 44.36 1.90
253 254 9.518906 GCATGAATATTTTCACACATGTATTGA 57.481 29.630 0.00 1.11 44.36 2.57
264 265 8.574196 TCACACATGTATTGAACATCTATACG 57.426 34.615 0.00 0.00 46.15 3.06
265 266 8.194769 TCACACATGTATTGAACATCTATACGT 58.805 33.333 0.00 0.00 46.15 3.57
266 267 8.480066 CACACATGTATTGAACATCTATACGTC 58.520 37.037 0.00 0.00 46.15 4.34
267 268 8.194769 ACACATGTATTGAACATCTATACGTCA 58.805 33.333 0.00 0.00 46.15 4.35
268 269 8.694394 CACATGTATTGAACATCTATACGTCAG 58.306 37.037 0.00 0.00 46.15 3.51
269 270 8.414003 ACATGTATTGAACATCTATACGTCAGT 58.586 33.333 0.00 0.32 46.15 3.41
270 271 8.694394 CATGTATTGAACATCTATACGTCAGTG 58.306 37.037 0.00 0.00 46.15 3.66
271 272 7.768240 TGTATTGAACATCTATACGTCAGTGT 58.232 34.615 0.00 0.00 37.72 3.55
272 273 7.700656 TGTATTGAACATCTATACGTCAGTGTG 59.299 37.037 0.00 0.00 37.72 3.82
273 274 5.638596 TGAACATCTATACGTCAGTGTGT 57.361 39.130 0.00 0.00 0.00 3.72
274 275 6.746745 TGAACATCTATACGTCAGTGTGTA 57.253 37.500 0.00 0.00 0.00 2.90
275 276 7.148355 TGAACATCTATACGTCAGTGTGTAA 57.852 36.000 0.00 0.00 0.00 2.41
276 277 7.768240 TGAACATCTATACGTCAGTGTGTAAT 58.232 34.615 0.00 0.00 0.00 1.89
277 278 8.248253 TGAACATCTATACGTCAGTGTGTAATT 58.752 33.333 0.00 0.00 0.00 1.40
278 279 7.987268 ACATCTATACGTCAGTGTGTAATTG 57.013 36.000 0.00 2.45 0.00 2.32
279 280 7.544622 ACATCTATACGTCAGTGTGTAATTGT 58.455 34.615 0.00 2.89 0.00 2.71
280 281 8.033038 ACATCTATACGTCAGTGTGTAATTGTT 58.967 33.333 0.00 0.00 0.00 2.83
281 282 8.869897 CATCTATACGTCAGTGTGTAATTGTTT 58.130 33.333 0.00 0.00 0.00 2.83
282 283 8.456904 TCTATACGTCAGTGTGTAATTGTTTC 57.543 34.615 0.00 0.00 0.00 2.78
283 284 4.806342 ACGTCAGTGTGTAATTGTTTCC 57.194 40.909 0.00 0.00 0.00 3.13
284 285 4.193090 ACGTCAGTGTGTAATTGTTTCCA 58.807 39.130 0.00 0.00 0.00 3.53
285 286 4.272504 ACGTCAGTGTGTAATTGTTTCCAG 59.727 41.667 0.00 0.00 0.00 3.86
286 287 4.509970 CGTCAGTGTGTAATTGTTTCCAGA 59.490 41.667 0.00 0.00 0.00 3.86
287 288 5.007234 CGTCAGTGTGTAATTGTTTCCAGAA 59.993 40.000 0.00 0.00 0.00 3.02
288 289 6.293407 CGTCAGTGTGTAATTGTTTCCAGAAT 60.293 38.462 0.00 0.00 0.00 2.40
289 290 7.425606 GTCAGTGTGTAATTGTTTCCAGAATT 58.574 34.615 0.00 0.00 31.09 2.17
290 291 7.920682 GTCAGTGTGTAATTGTTTCCAGAATTT 59.079 33.333 0.00 0.00 29.05 1.82
291 292 8.474025 TCAGTGTGTAATTGTTTCCAGAATTTT 58.526 29.630 0.00 0.00 29.05 1.82
292 293 9.743057 CAGTGTGTAATTGTTTCCAGAATTTTA 57.257 29.630 0.00 0.00 29.05 1.52
324 325 9.840427 AATTAGATGTGGTTCTTTAACATTTCG 57.160 29.630 0.00 0.00 37.34 3.46
325 326 8.610248 TTAGATGTGGTTCTTTAACATTTCGA 57.390 30.769 0.00 0.00 37.34 3.71
326 327 7.504924 AGATGTGGTTCTTTAACATTTCGAA 57.495 32.000 0.00 0.00 37.34 3.71
327 328 7.936584 AGATGTGGTTCTTTAACATTTCGAAA 58.063 30.769 13.91 13.91 37.34 3.46
328 329 7.860872 AGATGTGGTTCTTTAACATTTCGAAAC 59.139 33.333 13.81 0.00 37.34 2.78
329 330 6.853720 TGTGGTTCTTTAACATTTCGAAACA 58.146 32.000 13.81 0.00 37.34 2.83
330 331 7.313646 TGTGGTTCTTTAACATTTCGAAACAA 58.686 30.769 13.81 2.52 37.34 2.83
331 332 7.273815 TGTGGTTCTTTAACATTTCGAAACAAC 59.726 33.333 13.81 1.33 37.34 3.32
332 333 6.752815 TGGTTCTTTAACATTTCGAAACAACC 59.247 34.615 13.81 13.94 37.34 3.77
333 334 6.752815 GGTTCTTTAACATTTCGAAACAACCA 59.247 34.615 13.81 0.00 37.34 3.67
334 335 7.275999 GGTTCTTTAACATTTCGAAACAACCAA 59.724 33.333 13.81 3.36 37.34 3.67
335 336 7.979115 TCTTTAACATTTCGAAACAACCAAG 57.021 32.000 13.81 12.56 0.00 3.61
336 337 6.474102 TCTTTAACATTTCGAAACAACCAAGC 59.526 34.615 13.81 0.00 0.00 4.01
337 338 4.385358 AACATTTCGAAACAACCAAGCT 57.615 36.364 13.81 0.00 0.00 3.74
338 339 3.964909 ACATTTCGAAACAACCAAGCTC 58.035 40.909 13.81 0.00 0.00 4.09
339 340 3.632145 ACATTTCGAAACAACCAAGCTCT 59.368 39.130 13.81 0.00 0.00 4.09
340 341 4.819630 ACATTTCGAAACAACCAAGCTCTA 59.180 37.500 13.81 0.00 0.00 2.43
341 342 5.473504 ACATTTCGAAACAACCAAGCTCTAT 59.526 36.000 13.81 0.00 0.00 1.98
342 343 5.356882 TTTCGAAACAACCAAGCTCTATG 57.643 39.130 6.47 0.00 0.00 2.23
343 344 3.334691 TCGAAACAACCAAGCTCTATGG 58.665 45.455 1.15 1.15 43.84 2.74
344 345 3.007506 TCGAAACAACCAAGCTCTATGGA 59.992 43.478 9.96 0.00 40.56 3.41
345 346 3.372206 CGAAACAACCAAGCTCTATGGAG 59.628 47.826 9.96 0.86 40.56 3.86
353 354 4.842292 CTCTATGGAGCTTGCGCA 57.158 55.556 5.66 5.66 39.10 6.09
354 355 2.305405 CTCTATGGAGCTTGCGCAC 58.695 57.895 11.12 0.00 39.10 5.34
355 356 1.153369 TCTATGGAGCTTGCGCACC 60.153 57.895 11.12 9.09 45.80 5.01
359 360 2.050077 GGAGCTTGCGCACCAAAC 60.050 61.111 11.12 0.33 45.06 2.93
360 361 2.427410 GAGCTTGCGCACCAAACG 60.427 61.111 11.12 0.00 39.10 3.60
361 362 2.892334 GAGCTTGCGCACCAAACGA 61.892 57.895 11.12 0.00 39.10 3.85
362 363 2.725815 GCTTGCGCACCAAACGAC 60.726 61.111 11.12 0.00 35.78 4.34
363 364 3.022287 CTTGCGCACCAAACGACT 58.978 55.556 11.12 0.00 31.94 4.18
364 365 1.355210 CTTGCGCACCAAACGACTT 59.645 52.632 11.12 0.00 31.94 3.01
365 366 0.248458 CTTGCGCACCAAACGACTTT 60.248 50.000 11.12 0.00 31.94 2.66
366 367 0.248296 TTGCGCACCAAACGACTTTC 60.248 50.000 11.12 0.00 0.00 2.62
367 368 1.370051 GCGCACCAAACGACTTTCC 60.370 57.895 0.30 0.00 0.00 3.13
368 369 1.782028 GCGCACCAAACGACTTTCCT 61.782 55.000 0.30 0.00 0.00 3.36
369 370 0.041312 CGCACCAAACGACTTTCCTG 60.041 55.000 0.00 0.00 0.00 3.86
370 371 1.021968 GCACCAAACGACTTTCCTGT 58.978 50.000 0.00 0.00 0.00 4.00
371 372 2.215196 GCACCAAACGACTTTCCTGTA 58.785 47.619 0.00 0.00 0.00 2.74
372 373 2.223377 GCACCAAACGACTTTCCTGTAG 59.777 50.000 0.00 0.00 0.00 2.74
373 374 3.463944 CACCAAACGACTTTCCTGTAGT 58.536 45.455 0.00 0.00 0.00 2.73
374 375 3.875134 CACCAAACGACTTTCCTGTAGTT 59.125 43.478 0.00 0.00 37.37 2.24
375 376 3.875134 ACCAAACGACTTTCCTGTAGTTG 59.125 43.478 0.00 0.00 36.27 3.16
376 377 3.875134 CCAAACGACTTTCCTGTAGTTGT 59.125 43.478 0.00 0.00 41.02 3.32
377 378 5.051816 CCAAACGACTTTCCTGTAGTTGTA 58.948 41.667 0.00 0.00 38.90 2.41
378 379 5.176958 CCAAACGACTTTCCTGTAGTTGTAG 59.823 44.000 0.00 0.00 38.90 2.74
379 380 3.910648 ACGACTTTCCTGTAGTTGTAGC 58.089 45.455 0.00 0.00 38.24 3.58
380 381 3.319972 ACGACTTTCCTGTAGTTGTAGCA 59.680 43.478 0.00 0.00 38.24 3.49
381 382 3.921021 CGACTTTCCTGTAGTTGTAGCAG 59.079 47.826 0.00 0.00 0.00 4.24
382 383 3.665190 ACTTTCCTGTAGTTGTAGCAGC 58.335 45.455 0.00 0.00 0.00 5.25
383 384 3.071023 ACTTTCCTGTAGTTGTAGCAGCA 59.929 43.478 0.00 0.00 0.00 4.41
384 385 3.319137 TTCCTGTAGTTGTAGCAGCAG 57.681 47.619 0.00 0.00 0.00 4.24
385 386 1.066858 TCCTGTAGTTGTAGCAGCAGC 60.067 52.381 0.00 0.00 42.56 5.25
386 387 1.338105 CCTGTAGTTGTAGCAGCAGCA 60.338 52.381 3.17 0.00 45.49 4.41
387 388 2.416747 CTGTAGTTGTAGCAGCAGCAA 58.583 47.619 3.17 0.00 45.49 3.91
388 389 2.414481 CTGTAGTTGTAGCAGCAGCAAG 59.586 50.000 3.17 0.00 45.49 4.01
389 390 2.037121 TGTAGTTGTAGCAGCAGCAAGA 59.963 45.455 3.17 0.00 45.49 3.02
390 391 2.260844 AGTTGTAGCAGCAGCAAGAA 57.739 45.000 3.17 0.00 45.49 2.52
391 392 2.149578 AGTTGTAGCAGCAGCAAGAAG 58.850 47.619 3.17 0.00 45.49 2.85
392 393 2.146342 GTTGTAGCAGCAGCAAGAAGA 58.854 47.619 3.17 0.00 45.49 2.87
393 394 2.549064 TGTAGCAGCAGCAAGAAGAA 57.451 45.000 3.17 0.00 45.49 2.52
394 395 2.146342 TGTAGCAGCAGCAAGAAGAAC 58.854 47.619 3.17 0.00 45.49 3.01
395 396 2.146342 GTAGCAGCAGCAAGAAGAACA 58.854 47.619 3.17 0.00 45.49 3.18
396 397 1.683943 AGCAGCAGCAAGAAGAACAA 58.316 45.000 3.17 0.00 45.49 2.83
397 398 2.236766 AGCAGCAGCAAGAAGAACAAT 58.763 42.857 3.17 0.00 45.49 2.71
398 399 3.415212 AGCAGCAGCAAGAAGAACAATA 58.585 40.909 3.17 0.00 45.49 1.90
399 400 3.822735 AGCAGCAGCAAGAAGAACAATAA 59.177 39.130 3.17 0.00 45.49 1.40
400 401 3.916776 GCAGCAGCAAGAAGAACAATAAC 59.083 43.478 0.00 0.00 41.58 1.89
401 402 4.557296 GCAGCAGCAAGAAGAACAATAACA 60.557 41.667 0.00 0.00 41.58 2.41
402 403 5.522456 CAGCAGCAAGAAGAACAATAACAA 58.478 37.500 0.00 0.00 0.00 2.83
403 404 5.400485 CAGCAGCAAGAAGAACAATAACAAC 59.600 40.000 0.00 0.00 0.00 3.32
404 405 5.067674 AGCAGCAAGAAGAACAATAACAACA 59.932 36.000 0.00 0.00 0.00 3.33
405 406 5.748152 GCAGCAAGAAGAACAATAACAACAA 59.252 36.000 0.00 0.00 0.00 2.83
406 407 6.421801 GCAGCAAGAAGAACAATAACAACAAT 59.578 34.615 0.00 0.00 0.00 2.71
407 408 7.042523 GCAGCAAGAAGAACAATAACAACAATT 60.043 33.333 0.00 0.00 0.00 2.32
408 409 8.270799 CAGCAAGAAGAACAATAACAACAATTG 58.729 33.333 3.24 3.24 39.68 2.32
409 410 7.042523 AGCAAGAAGAACAATAACAACAATTGC 60.043 33.333 5.05 0.00 37.77 3.56
410 411 7.042523 GCAAGAAGAACAATAACAACAATTGCT 60.043 33.333 5.05 0.00 37.77 3.91
411 412 9.462174 CAAGAAGAACAATAACAACAATTGCTA 57.538 29.630 5.05 0.00 37.77 3.49
412 413 9.463443 AAGAAGAACAATAACAACAATTGCTAC 57.537 29.630 5.05 0.00 37.77 3.58
413 414 8.850156 AGAAGAACAATAACAACAATTGCTACT 58.150 29.630 5.05 0.00 37.77 2.57
415 416 9.893305 AAGAACAATAACAACAATTGCTACTAC 57.107 29.630 5.05 0.00 37.77 2.73
416 417 9.062524 AGAACAATAACAACAATTGCTACTACA 57.937 29.630 5.05 0.00 37.77 2.74
417 418 9.672086 GAACAATAACAACAATTGCTACTACAA 57.328 29.630 5.05 0.00 37.77 2.41
418 419 9.458374 AACAATAACAACAATTGCTACTACAAC 57.542 29.630 5.05 0.00 37.77 3.32
419 420 8.625651 ACAATAACAACAATTGCTACTACAACA 58.374 29.630 5.05 0.00 37.77 3.33
420 421 8.901748 CAATAACAACAATTGCTACTACAACAC 58.098 33.333 5.05 0.00 31.03 3.32
421 422 5.432885 ACAACAATTGCTACTACAACACC 57.567 39.130 5.05 0.00 31.03 4.16
422 423 4.884744 ACAACAATTGCTACTACAACACCA 59.115 37.500 5.05 0.00 31.03 4.17
423 424 5.212194 CAACAATTGCTACTACAACACCAC 58.788 41.667 5.05 0.00 31.03 4.16
424 425 3.818773 ACAATTGCTACTACAACACCACC 59.181 43.478 5.05 0.00 31.03 4.61
425 426 3.780804 ATTGCTACTACAACACCACCA 57.219 42.857 0.00 0.00 31.03 4.17
426 427 2.536761 TGCTACTACAACACCACCAC 57.463 50.000 0.00 0.00 0.00 4.16
427 428 1.071071 TGCTACTACAACACCACCACC 59.929 52.381 0.00 0.00 0.00 4.61
428 429 1.071071 GCTACTACAACACCACCACCA 59.929 52.381 0.00 0.00 0.00 4.17
429 430 2.485835 GCTACTACAACACCACCACCAA 60.486 50.000 0.00 0.00 0.00 3.67
430 431 2.047002 ACTACAACACCACCACCAAC 57.953 50.000 0.00 0.00 0.00 3.77
431 432 0.941542 CTACAACACCACCACCAACG 59.058 55.000 0.00 0.00 0.00 4.10
432 433 0.540454 TACAACACCACCACCAACGA 59.460 50.000 0.00 0.00 0.00 3.85
433 434 0.746563 ACAACACCACCACCAACGAG 60.747 55.000 0.00 0.00 0.00 4.18
434 435 0.462937 CAACACCACCACCAACGAGA 60.463 55.000 0.00 0.00 0.00 4.04
435 436 0.253610 AACACCACCACCAACGAGAA 59.746 50.000 0.00 0.00 0.00 2.87
436 437 0.463116 ACACCACCACCAACGAGAAC 60.463 55.000 0.00 0.00 0.00 3.01
437 438 0.462937 CACCACCACCAACGAGAACA 60.463 55.000 0.00 0.00 0.00 3.18
438 439 0.253610 ACCACCACCAACGAGAACAA 59.746 50.000 0.00 0.00 0.00 2.83
439 440 0.661020 CCACCACCAACGAGAACAAC 59.339 55.000 0.00 0.00 0.00 3.32
440 441 1.374560 CACCACCAACGAGAACAACA 58.625 50.000 0.00 0.00 0.00 3.33
441 442 1.946768 CACCACCAACGAGAACAACAT 59.053 47.619 0.00 0.00 0.00 2.71
442 443 3.135225 CACCACCAACGAGAACAACATA 58.865 45.455 0.00 0.00 0.00 2.29
443 444 3.751175 CACCACCAACGAGAACAACATAT 59.249 43.478 0.00 0.00 0.00 1.78
444 445 4.932799 CACCACCAACGAGAACAACATATA 59.067 41.667 0.00 0.00 0.00 0.86
445 446 5.410132 CACCACCAACGAGAACAACATATAA 59.590 40.000 0.00 0.00 0.00 0.98
446 447 5.998981 ACCACCAACGAGAACAACATATAAA 59.001 36.000 0.00 0.00 0.00 1.40
447 448 6.487331 ACCACCAACGAGAACAACATATAAAA 59.513 34.615 0.00 0.00 0.00 1.52
448 449 7.013464 ACCACCAACGAGAACAACATATAAAAA 59.987 33.333 0.00 0.00 0.00 1.94
503 504 9.584008 AGTAGTAGTAATAATTCCTTCGATCCA 57.416 33.333 0.00 0.00 0.00 3.41
514 515 8.608844 AATTCCTTCGATCCATATTACTTGTC 57.391 34.615 0.00 0.00 0.00 3.18
515 516 6.978674 TCCTTCGATCCATATTACTTGTCT 57.021 37.500 0.00 0.00 0.00 3.41
516 517 7.361457 TCCTTCGATCCATATTACTTGTCTT 57.639 36.000 0.00 0.00 0.00 3.01
517 518 8.473358 TCCTTCGATCCATATTACTTGTCTTA 57.527 34.615 0.00 0.00 0.00 2.10
518 519 8.577296 TCCTTCGATCCATATTACTTGTCTTAG 58.423 37.037 0.00 0.00 0.00 2.18
519 520 8.577296 CCTTCGATCCATATTACTTGTCTTAGA 58.423 37.037 0.00 0.00 0.00 2.10
558 559 6.210784 GGAAGGAGTAATAATAATTTGGGGGC 59.789 42.308 0.00 0.00 0.00 5.80
569 570 3.885724 ATTTGGGGGCAAACTTATTCG 57.114 42.857 0.00 0.00 0.00 3.34
577 578 2.239201 GCAAACTTATTCGTTGCGTCC 58.761 47.619 0.00 0.00 0.00 4.79
578 579 2.095919 GCAAACTTATTCGTTGCGTCCT 60.096 45.455 0.00 0.00 0.00 3.85
579 580 3.123959 GCAAACTTATTCGTTGCGTCCTA 59.876 43.478 0.00 0.00 0.00 2.94
580 581 4.634991 CAAACTTATTCGTTGCGTCCTAC 58.365 43.478 0.00 0.00 0.00 3.18
581 582 3.581024 ACTTATTCGTTGCGTCCTACA 57.419 42.857 0.00 0.00 0.00 2.74
582 583 3.916761 ACTTATTCGTTGCGTCCTACAA 58.083 40.909 0.00 0.00 0.00 2.41
583 584 4.501071 ACTTATTCGTTGCGTCCTACAAT 58.499 39.130 0.00 0.00 0.00 2.71
584 585 5.653507 ACTTATTCGTTGCGTCCTACAATA 58.346 37.500 0.00 0.00 0.00 1.90
585 586 6.101332 ACTTATTCGTTGCGTCCTACAATAA 58.899 36.000 0.00 0.00 0.00 1.40
586 587 4.852609 ATTCGTTGCGTCCTACAATAAC 57.147 40.909 0.00 0.00 0.00 1.89
587 588 3.300852 TCGTTGCGTCCTACAATAACA 57.699 42.857 0.00 0.00 0.00 2.41
588 589 3.247442 TCGTTGCGTCCTACAATAACAG 58.753 45.455 0.00 0.00 0.00 3.16
589 590 2.991190 CGTTGCGTCCTACAATAACAGT 59.009 45.455 0.00 0.00 0.00 3.55
590 591 3.430895 CGTTGCGTCCTACAATAACAGTT 59.569 43.478 0.00 0.00 0.00 3.16
591 592 4.084223 CGTTGCGTCCTACAATAACAGTTT 60.084 41.667 0.00 0.00 0.00 2.66
592 593 5.379827 GTTGCGTCCTACAATAACAGTTTC 58.620 41.667 0.00 0.00 0.00 2.78
593 594 4.633175 TGCGTCCTACAATAACAGTTTCA 58.367 39.130 0.00 0.00 0.00 2.69
594 595 4.449743 TGCGTCCTACAATAACAGTTTCAC 59.550 41.667 0.00 0.00 0.00 3.18
595 596 4.689345 GCGTCCTACAATAACAGTTTCACT 59.311 41.667 0.00 0.00 0.00 3.41
605 606 2.427232 CAGTTTCACTGCATGGGTTG 57.573 50.000 0.00 0.00 39.62 3.77
616 617 2.712057 CATGGGTTGCTCTCAAACAC 57.288 50.000 0.00 0.00 41.62 3.32
617 618 1.955778 CATGGGTTGCTCTCAAACACA 59.044 47.619 0.00 0.00 41.62 3.72
618 619 1.388547 TGGGTTGCTCTCAAACACAC 58.611 50.000 0.00 0.00 41.62 3.82
619 620 1.340502 TGGGTTGCTCTCAAACACACA 60.341 47.619 0.00 0.00 41.62 3.72
620 621 1.065551 GGGTTGCTCTCAAACACACAC 59.934 52.381 0.00 0.00 41.62 3.82
621 622 1.268032 GGTTGCTCTCAAACACACACG 60.268 52.381 0.00 0.00 39.65 4.49
622 623 0.376852 TTGCTCTCAAACACACACGC 59.623 50.000 0.00 0.00 0.00 5.34
623 624 1.083401 GCTCTCAAACACACACGCG 60.083 57.895 3.53 3.53 0.00 6.01
624 625 1.083401 CTCTCAAACACACACGCGC 60.083 57.895 5.73 0.00 0.00 6.86
625 626 2.423517 CTCAAACACACACGCGCG 60.424 61.111 30.96 30.96 0.00 6.86
626 627 4.583254 TCAAACACACACGCGCGC 62.583 61.111 32.58 23.91 0.00 6.86
642 643 4.649954 GCGCGCACACACAGACAC 62.650 66.667 29.10 0.00 0.00 3.67
643 644 3.261216 CGCGCACACACAGACACA 61.261 61.111 8.75 0.00 0.00 3.72
644 645 2.324477 GCGCACACACAGACACAC 59.676 61.111 0.30 0.00 0.00 3.82
645 646 2.460275 GCGCACACACAGACACACA 61.460 57.895 0.30 0.00 0.00 3.72
646 647 1.348250 CGCACACACAGACACACAC 59.652 57.895 0.00 0.00 0.00 3.82
647 648 1.357991 CGCACACACAGACACACACA 61.358 55.000 0.00 0.00 0.00 3.72
648 649 0.096976 GCACACACAGACACACACAC 59.903 55.000 0.00 0.00 0.00 3.82
649 650 1.437625 CACACACAGACACACACACA 58.562 50.000 0.00 0.00 0.00 3.72
650 651 1.128507 CACACACAGACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
651 652 1.270571 ACACACAGACACACACACACA 60.271 47.619 0.00 0.00 0.00 3.72
652 653 2.009051 CACACAGACACACACACACAT 58.991 47.619 0.00 0.00 0.00 3.21
653 654 2.009051 ACACAGACACACACACACATG 58.991 47.619 0.00 0.00 0.00 3.21
654 655 1.016627 ACAGACACACACACACATGC 58.983 50.000 0.00 0.00 0.00 4.06
655 656 1.015868 CAGACACACACACACATGCA 58.984 50.000 0.00 0.00 0.00 3.96
656 657 1.605232 CAGACACACACACACATGCAT 59.395 47.619 0.00 0.00 0.00 3.96
657 658 1.605232 AGACACACACACACATGCATG 59.395 47.619 25.09 25.09 0.00 4.06
658 659 1.334556 GACACACACACACATGCATGT 59.665 47.619 26.61 26.61 42.84 3.21
668 669 2.882927 ACATGCATGTGGATCAATGC 57.117 45.000 30.92 16.28 40.03 3.56
669 670 2.384828 ACATGCATGTGGATCAATGCT 58.615 42.857 30.92 1.60 40.03 3.79
670 671 2.100749 ACATGCATGTGGATCAATGCTG 59.899 45.455 30.92 18.32 40.03 4.41
671 672 1.107945 TGCATGTGGATCAATGCTGG 58.892 50.000 20.99 0.00 40.41 4.85
672 673 0.387929 GCATGTGGATCAATGCTGGG 59.612 55.000 16.00 0.00 37.10 4.45
673 674 1.037493 CATGTGGATCAATGCTGGGG 58.963 55.000 0.00 0.00 0.00 4.96
674 675 0.105862 ATGTGGATCAATGCTGGGGG 60.106 55.000 0.00 0.00 0.00 5.40
675 676 2.129785 GTGGATCAATGCTGGGGGC 61.130 63.158 0.00 0.00 42.22 5.80
684 685 4.195334 GCTGGGGGCATGACGGAT 62.195 66.667 0.00 0.00 41.35 4.18
685 686 2.111878 CTGGGGGCATGACGGATC 59.888 66.667 0.00 0.00 0.00 3.36
686 687 2.690510 TGGGGGCATGACGGATCA 60.691 61.111 0.00 0.00 39.83 2.92
712 713 3.069300 TCTTGAGAGGTAGCAGCATGATC 59.931 47.826 0.00 0.00 39.69 2.92
802 805 2.224426 TGTCTTGACGGGCTAACACATT 60.224 45.455 0.00 0.00 0.00 2.71
803 806 3.007074 TGTCTTGACGGGCTAACACATTA 59.993 43.478 0.00 0.00 0.00 1.90
805 808 3.998341 TCTTGACGGGCTAACACATTAAC 59.002 43.478 0.00 0.00 0.00 2.01
806 809 3.404224 TGACGGGCTAACACATTAACA 57.596 42.857 0.00 0.00 0.00 2.41
807 810 3.945346 TGACGGGCTAACACATTAACAT 58.055 40.909 0.00 0.00 0.00 2.71
808 811 5.087391 TGACGGGCTAACACATTAACATA 57.913 39.130 0.00 0.00 0.00 2.29
809 812 5.113383 TGACGGGCTAACACATTAACATAG 58.887 41.667 0.00 0.00 0.00 2.23
831 839 4.951715 AGCTTGCATGATGATAGGTGAAAA 59.048 37.500 3.33 0.00 0.00 2.29
860 868 1.086696 ACAAATCGAATGCACCTCGG 58.913 50.000 17.34 6.39 36.93 4.63
863 871 0.806102 AATCGAATGCACCTCGGTCG 60.806 55.000 17.34 7.55 36.93 4.79
883 891 4.614702 GTCGATCATACACTCGTGATGATG 59.385 45.833 19.81 13.16 37.65 3.07
888 896 1.266178 ACACTCGTGATGATGGGTCA 58.734 50.000 3.74 0.00 39.04 4.02
890 898 2.237143 ACACTCGTGATGATGGGTCAAT 59.763 45.455 3.74 0.00 38.01 2.57
891 899 3.273434 CACTCGTGATGATGGGTCAATT 58.727 45.455 0.00 0.00 38.01 2.32
892 900 3.310774 CACTCGTGATGATGGGTCAATTC 59.689 47.826 0.00 0.00 38.01 2.17
893 901 3.055167 ACTCGTGATGATGGGTCAATTCA 60.055 43.478 0.00 0.00 38.01 2.57
894 902 3.270027 TCGTGATGATGGGTCAATTCAC 58.730 45.455 3.32 3.32 39.40 3.18
895 903 2.355756 CGTGATGATGGGTCAATTCACC 59.644 50.000 0.00 0.00 39.52 4.02
896 904 3.624777 GTGATGATGGGTCAATTCACCT 58.375 45.455 0.00 0.00 37.96 4.00
897 905 4.019174 GTGATGATGGGTCAATTCACCTT 58.981 43.478 0.00 0.00 37.96 3.50
898 906 4.096984 GTGATGATGGGTCAATTCACCTTC 59.903 45.833 0.00 0.00 37.96 3.46
899 907 3.805066 TGATGGGTCAATTCACCTTCA 57.195 42.857 0.00 0.00 36.57 3.02
900 908 3.420893 TGATGGGTCAATTCACCTTCAC 58.579 45.455 0.00 0.00 36.57 3.18
901 909 2.286365 TGGGTCAATTCACCTTCACC 57.714 50.000 0.00 0.00 36.57 4.02
902 910 1.780309 TGGGTCAATTCACCTTCACCT 59.220 47.619 0.00 0.00 36.57 4.00
903 911 2.224769 TGGGTCAATTCACCTTCACCTC 60.225 50.000 0.00 0.00 36.57 3.85
904 912 2.224769 GGGTCAATTCACCTTCACCTCA 60.225 50.000 0.00 0.00 36.57 3.86
905 913 2.814336 GGTCAATTCACCTTCACCTCAC 59.186 50.000 0.00 0.00 33.08 3.51
906 914 2.814336 GTCAATTCACCTTCACCTCACC 59.186 50.000 0.00 0.00 0.00 4.02
907 915 2.711009 TCAATTCACCTTCACCTCACCT 59.289 45.455 0.00 0.00 0.00 4.00
908 916 2.816087 CAATTCACCTTCACCTCACCTG 59.184 50.000 0.00 0.00 0.00 4.00
924 932 5.425217 CCTCACCTGTATGGCCATATATACA 59.575 44.000 27.84 21.58 40.22 2.29
962 980 1.736126 CATCTCGCATCACAAGCAACT 59.264 47.619 0.00 0.00 0.00 3.16
979 997 1.967319 ACTGCACTAAACCACACCAG 58.033 50.000 0.00 0.00 0.00 4.00
980 998 0.593128 CTGCACTAAACCACACCAGC 59.407 55.000 0.00 0.00 0.00 4.85
1019 1047 1.686355 ATGGCGTCTAGAGGTGAGAG 58.314 55.000 13.65 0.00 0.00 3.20
1085 1117 7.112565 CAGCGAAAATCATGTATTCTGCATTAC 59.887 37.037 17.03 0.00 0.00 1.89
1096 1128 8.023021 TGTATTCTGCATTACTTACTCCATCT 57.977 34.615 0.00 0.00 0.00 2.90
1133 1165 4.494091 TCTTCTTTGCTCCCATCTTAGG 57.506 45.455 0.00 0.00 0.00 2.69
1134 1166 3.846588 TCTTCTTTGCTCCCATCTTAGGT 59.153 43.478 0.00 0.00 0.00 3.08
1171 1203 4.035558 TCAATCTTGGCTGAATGATTACGC 59.964 41.667 0.00 0.00 0.00 4.42
1174 1206 4.119862 TCTTGGCTGAATGATTACGCTAC 58.880 43.478 0.00 0.00 0.00 3.58
1175 1207 2.469826 TGGCTGAATGATTACGCTACG 58.530 47.619 0.00 0.00 0.00 3.51
1180 1212 4.227538 CTGAATGATTACGCTACGTAGGG 58.772 47.826 31.32 31.32 43.21 3.53
1285 1317 0.606401 CATGTCAACTTCAGGGCCGT 60.606 55.000 0.00 0.00 0.00 5.68
1286 1318 0.321653 ATGTCAACTTCAGGGCCGTC 60.322 55.000 0.00 0.00 0.00 4.79
1378 1410 1.137872 CTGTGTCATGCTAGGAGGACC 59.862 57.143 23.59 15.91 0.00 4.46
1414 1447 4.810790 TCCTAGTTCTTTCTCTCTTTGCG 58.189 43.478 0.00 0.00 0.00 4.85
1415 1448 3.369451 CCTAGTTCTTTCTCTCTTTGCGC 59.631 47.826 0.00 0.00 0.00 6.09
1426 1459 0.179070 TCTTTGCGCGCCCATACATA 60.179 50.000 30.77 3.44 0.00 2.29
1435 1468 3.306973 CGCGCCCATACATATTGAGTATG 59.693 47.826 0.00 6.40 45.23 2.39
1467 1500 2.724174 GACACGCTTGGTTATTTGCAAC 59.276 45.455 0.00 0.00 0.00 4.17
1501 1534 2.898705 TGGTCAACAAACAATTGCACC 58.101 42.857 5.05 1.47 40.34 5.01
1519 1552 1.906574 ACCTTTTGCTCCGGTATCTGA 59.093 47.619 0.00 0.00 0.00 3.27
1525 1558 2.029307 GCTCCGGTATCTGACACCCC 62.029 65.000 0.00 0.00 31.96 4.95
1556 1589 2.255252 CCTTTGACTTTGGCCGCG 59.745 61.111 0.00 0.00 0.00 6.46
1572 1605 1.291184 CGCGAGTGAATGAAGCACCA 61.291 55.000 0.00 0.00 36.95 4.17
1633 1666 9.765795 ATGCACTCCAGAATAAATTACTAGTAC 57.234 33.333 0.91 0.00 0.00 2.73
1634 1667 8.978472 TGCACTCCAGAATAAATTACTAGTACT 58.022 33.333 0.91 0.00 0.00 2.73
1635 1668 9.465985 GCACTCCAGAATAAATTACTAGTACTC 57.534 37.037 0.91 0.00 0.00 2.59
1652 1685 8.858094 ACTAGTACTCATTAGTATTACCTTGCC 58.142 37.037 0.00 0.00 40.30 4.52
1653 1686 6.746120 AGTACTCATTAGTATTACCTTGCCG 58.254 40.000 0.00 0.00 40.30 5.69
1654 1687 4.957296 ACTCATTAGTATTACCTTGCCGG 58.043 43.478 0.00 0.00 32.84 6.13
1655 1688 3.735591 TCATTAGTATTACCTTGCCGGC 58.264 45.455 22.73 22.73 35.61 6.13
1656 1689 3.389983 TCATTAGTATTACCTTGCCGGCT 59.610 43.478 29.70 9.99 35.61 5.52
1657 1690 3.918294 TTAGTATTACCTTGCCGGCTT 57.082 42.857 29.70 11.79 35.61 4.35
1658 1691 5.070714 TCATTAGTATTACCTTGCCGGCTTA 59.929 40.000 29.70 14.91 35.61 3.09
1659 1692 3.918294 AGTATTACCTTGCCGGCTTAA 57.082 42.857 29.70 18.66 35.61 1.85
1660 1693 4.432980 AGTATTACCTTGCCGGCTTAAT 57.567 40.909 29.70 23.38 35.61 1.40
1661 1694 5.556006 AGTATTACCTTGCCGGCTTAATA 57.444 39.130 29.70 22.46 35.61 0.98
1662 1695 5.932455 AGTATTACCTTGCCGGCTTAATAA 58.068 37.500 29.70 20.06 35.61 1.40
1663 1696 5.995897 AGTATTACCTTGCCGGCTTAATAAG 59.004 40.000 29.70 21.29 35.61 1.73
1664 1697 2.801077 ACCTTGCCGGCTTAATAAGT 57.199 45.000 29.70 12.18 35.61 2.24
1665 1698 3.918294 ACCTTGCCGGCTTAATAAGTA 57.082 42.857 29.70 0.00 35.61 2.24
1666 1699 3.538591 ACCTTGCCGGCTTAATAAGTAC 58.461 45.455 29.70 0.00 35.61 2.73
1702 1735 7.600231 ATTTAGGGTAGAAAGAGTAGTAGGC 57.400 40.000 0.00 0.00 0.00 3.93
1706 1739 3.068448 GGTAGAAAGAGTAGTAGGCCTGC 59.932 52.174 17.99 15.82 0.00 4.85
1708 1741 0.824759 AAAGAGTAGTAGGCCTGCCG 59.175 55.000 17.99 0.00 41.95 5.69
1709 1742 1.043673 AAGAGTAGTAGGCCTGCCGG 61.044 60.000 17.99 0.00 41.95 6.13
1799 1832 7.829378 AAATTTAGTGTAGAAAGAGTAGCCG 57.171 36.000 0.00 0.00 0.00 5.52
1855 1888 9.594936 AGACTAGACTTAATGGCTGTCTTATAT 57.405 33.333 0.00 0.00 38.27 0.86
1899 1932 4.454728 TGCCAGCTGCCTTAATAAAAAG 57.545 40.909 8.66 0.00 40.16 2.27
1906 1939 7.336931 CCAGCTGCCTTAATAAAAAGTAAGAGA 59.663 37.037 8.66 0.00 30.27 3.10
1970 2003 7.797123 GTGTCAAATAAGTAAAAAGTGAGGTCG 59.203 37.037 0.00 0.00 0.00 4.79
1971 2004 6.795593 GTCAAATAAGTAAAAAGTGAGGTCGC 59.204 38.462 0.00 0.00 0.00 5.19
1981 2014 2.101380 GAGGTCGCGCACTCTCTC 59.899 66.667 18.57 2.79 0.00 3.20
1982 2015 2.360600 AGGTCGCGCACTCTCTCT 60.361 61.111 8.75 0.00 0.00 3.10
1983 2016 1.928706 GAGGTCGCGCACTCTCTCTT 61.929 60.000 18.57 0.00 0.00 2.85
2002 2041 4.843728 TCTTTCTCTCTCACTCTCTCTCC 58.156 47.826 0.00 0.00 0.00 3.71
2020 2059 3.582647 TCTCCTAGTTGAAATGCAGTGGA 59.417 43.478 0.00 0.00 0.00 4.02
2041 2080 7.176690 AGTGGAGATGGACGAATTACAAAATTT 59.823 33.333 0.00 0.00 35.41 1.82
2146 2186 6.410222 TTTTGAATACCCCTTTCCCATCTA 57.590 37.500 0.00 0.00 0.00 1.98
2154 2194 2.880890 CCCTTTCCCATCTAATTGCTCG 59.119 50.000 0.00 0.00 0.00 5.03
2204 2244 6.371825 GGTTTACACTTAGGAAGTTCCATCTG 59.628 42.308 23.87 14.30 40.46 2.90
2207 2247 2.093447 ACTTAGGAAGTTCCATCTGCCG 60.093 50.000 23.87 7.15 39.04 5.69
2225 2265 3.181458 TGCCGGTTTCAGTTAGAAAGACT 60.181 43.478 1.90 0.00 46.34 3.24
2245 2285 0.533978 CATCCAACCCGTGTGTCACA 60.534 55.000 0.18 0.18 33.40 3.58
2269 2309 5.428253 TGATACCAAGGATTTAGTGCTCAC 58.572 41.667 0.00 0.00 0.00 3.51
2279 2319 3.402628 TTAGTGCTCACCCTCTTCAAC 57.597 47.619 0.00 0.00 0.00 3.18
2373 2415 3.297134 AAGCTTCTTCCCACAACTCAA 57.703 42.857 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.106519 AAAAGGCTGCACTCACCACT 60.107 50.000 0.50 0.00 0.00 4.00
1 2 0.031178 CAAAAGGCTGCACTCACCAC 59.969 55.000 0.50 0.00 0.00 4.16
2 3 0.106769 TCAAAAGGCTGCACTCACCA 60.107 50.000 0.50 0.00 0.00 4.17
3 4 1.251251 ATCAAAAGGCTGCACTCACC 58.749 50.000 0.50 0.00 0.00 4.02
4 5 2.294233 TCAATCAAAAGGCTGCACTCAC 59.706 45.455 0.50 0.00 0.00 3.51
5 6 2.585330 TCAATCAAAAGGCTGCACTCA 58.415 42.857 0.50 0.00 0.00 3.41
6 7 3.648339 TTCAATCAAAAGGCTGCACTC 57.352 42.857 0.50 0.00 0.00 3.51
7 8 4.405116 TTTTCAATCAAAAGGCTGCACT 57.595 36.364 0.50 0.00 30.07 4.40
8 9 5.678132 ATTTTTCAATCAAAAGGCTGCAC 57.322 34.783 0.50 0.00 35.34 4.57
9 10 6.765036 TGTAATTTTTCAATCAAAAGGCTGCA 59.235 30.769 0.50 0.00 35.34 4.41
10 11 7.188468 TGTAATTTTTCAATCAAAAGGCTGC 57.812 32.000 0.00 0.00 35.34 5.25
46 47 9.684448 TGAATGCGTATTTTTCAGAATTGTTTA 57.316 25.926 0.00 0.00 0.00 2.01
47 48 8.487176 GTGAATGCGTATTTTTCAGAATTGTTT 58.513 29.630 0.00 0.00 30.50 2.83
48 49 7.651304 TGTGAATGCGTATTTTTCAGAATTGTT 59.349 29.630 0.00 0.00 30.50 2.83
49 50 7.144661 TGTGAATGCGTATTTTTCAGAATTGT 58.855 30.769 0.00 0.00 30.50 2.71
50 51 7.565450 TGTGAATGCGTATTTTTCAGAATTG 57.435 32.000 0.00 0.00 30.50 2.32
52 53 9.454585 CATATGTGAATGCGTATTTTTCAGAAT 57.545 29.630 0.00 0.00 30.50 2.40
53 54 7.914871 CCATATGTGAATGCGTATTTTTCAGAA 59.085 33.333 0.00 0.00 30.50 3.02
54 55 7.281999 TCCATATGTGAATGCGTATTTTTCAGA 59.718 33.333 0.00 0.00 30.50 3.27
55 56 7.416817 TCCATATGTGAATGCGTATTTTTCAG 58.583 34.615 0.00 0.00 30.50 3.02
56 57 7.326968 TCCATATGTGAATGCGTATTTTTCA 57.673 32.000 0.00 1.32 0.00 2.69
86 87 9.337396 TCTGATTACAACTTTCACACATTTAGT 57.663 29.630 0.00 0.00 0.00 2.24
89 90 9.868277 TTTTCTGATTACAACTTTCACACATTT 57.132 25.926 0.00 0.00 0.00 2.32
92 93 9.944663 GTATTTTCTGATTACAACTTTCACACA 57.055 29.630 0.00 0.00 0.00 3.72
93 94 9.944663 TGTATTTTCTGATTACAACTTTCACAC 57.055 29.630 0.00 0.00 0.00 3.82
106 107 8.795513 TGTCACATGTCATTGTATTTTCTGATT 58.204 29.630 0.00 0.00 0.00 2.57
107 108 8.339344 TGTCACATGTCATTGTATTTTCTGAT 57.661 30.769 0.00 0.00 0.00 2.90
108 109 7.742556 TGTCACATGTCATTGTATTTTCTGA 57.257 32.000 0.00 0.00 0.00 3.27
109 110 7.008901 GCATGTCACATGTCATTGTATTTTCTG 59.991 37.037 19.13 0.00 0.00 3.02
110 111 7.031372 GCATGTCACATGTCATTGTATTTTCT 58.969 34.615 19.13 0.00 0.00 2.52
111 112 6.807720 TGCATGTCACATGTCATTGTATTTTC 59.192 34.615 19.13 0.00 0.00 2.29
112 113 6.587226 GTGCATGTCACATGTCATTGTATTTT 59.413 34.615 19.13 0.00 44.98 1.82
113 114 6.094719 GTGCATGTCACATGTCATTGTATTT 58.905 36.000 19.13 0.00 44.98 1.40
114 115 5.643664 GTGCATGTCACATGTCATTGTATT 58.356 37.500 19.13 0.00 44.98 1.89
115 116 5.239359 GTGCATGTCACATGTCATTGTAT 57.761 39.130 19.13 0.00 44.98 2.29
116 117 4.683501 GTGCATGTCACATGTCATTGTA 57.316 40.909 19.13 0.00 44.98 2.41
117 118 3.564235 GTGCATGTCACATGTCATTGT 57.436 42.857 19.13 0.00 44.98 2.71
127 128 1.270274 TGGCATTCTTGTGCATGTCAC 59.730 47.619 11.79 11.79 46.81 3.67
128 129 1.618487 TGGCATTCTTGTGCATGTCA 58.382 45.000 0.00 0.00 46.81 3.58
129 130 2.728690 TTGGCATTCTTGTGCATGTC 57.271 45.000 0.00 0.00 46.81 3.06
130 131 3.688694 ATTTGGCATTCTTGTGCATGT 57.311 38.095 0.00 0.00 46.81 3.21
131 132 3.425625 GCAATTTGGCATTCTTGTGCATG 60.426 43.478 0.00 0.00 46.81 4.06
132 133 2.745281 GCAATTTGGCATTCTTGTGCAT 59.255 40.909 0.00 0.00 46.81 3.96
133 134 2.144730 GCAATTTGGCATTCTTGTGCA 58.855 42.857 0.00 0.00 46.81 4.57
134 135 1.127213 CGCAATTTGGCATTCTTGTGC 59.873 47.619 0.00 0.00 44.31 4.57
135 136 2.674954 TCGCAATTTGGCATTCTTGTG 58.325 42.857 9.95 9.95 0.00 3.33
136 137 3.255725 CATCGCAATTTGGCATTCTTGT 58.744 40.909 0.00 0.00 0.00 3.16
137 138 3.255725 ACATCGCAATTTGGCATTCTTG 58.744 40.909 0.00 0.00 0.00 3.02
138 139 3.598019 ACATCGCAATTTGGCATTCTT 57.402 38.095 0.00 0.00 0.00 2.52
139 140 3.696051 AGTACATCGCAATTTGGCATTCT 59.304 39.130 0.00 0.00 0.00 2.40
140 141 4.032703 AGTACATCGCAATTTGGCATTC 57.967 40.909 0.00 0.00 0.00 2.67
141 142 4.158394 AGAAGTACATCGCAATTTGGCATT 59.842 37.500 0.00 0.00 0.00 3.56
142 143 3.696051 AGAAGTACATCGCAATTTGGCAT 59.304 39.130 0.00 0.00 0.00 4.40
143 144 3.081061 AGAAGTACATCGCAATTTGGCA 58.919 40.909 0.00 0.00 0.00 4.92
144 145 3.126858 TGAGAAGTACATCGCAATTTGGC 59.873 43.478 1.88 0.00 0.00 4.52
145 146 4.393062 AGTGAGAAGTACATCGCAATTTGG 59.607 41.667 6.10 0.00 30.81 3.28
146 147 5.536554 AGTGAGAAGTACATCGCAATTTG 57.463 39.130 6.10 0.00 30.81 2.32
147 148 6.163476 TGTAGTGAGAAGTACATCGCAATTT 58.837 36.000 9.85 1.21 30.39 1.82
148 149 5.720202 TGTAGTGAGAAGTACATCGCAATT 58.280 37.500 9.85 3.39 30.39 2.32
149 150 5.324784 TGTAGTGAGAAGTACATCGCAAT 57.675 39.130 9.54 9.54 32.42 3.56
150 151 4.776795 TGTAGTGAGAAGTACATCGCAA 57.223 40.909 6.10 0.00 30.81 4.85
151 152 4.776795 TTGTAGTGAGAAGTACATCGCA 57.223 40.909 0.12 0.12 0.00 5.10
152 153 6.462073 TTTTTGTAGTGAGAAGTACATCGC 57.538 37.500 0.00 0.00 0.00 4.58
153 154 7.201530 GGGATTTTTGTAGTGAGAAGTACATCG 60.202 40.741 0.00 0.00 0.00 3.84
154 155 7.065923 GGGGATTTTTGTAGTGAGAAGTACATC 59.934 40.741 0.00 0.00 0.00 3.06
155 156 6.884836 GGGGATTTTTGTAGTGAGAAGTACAT 59.115 38.462 0.00 0.00 0.00 2.29
156 157 6.235664 GGGGATTTTTGTAGTGAGAAGTACA 58.764 40.000 0.00 0.00 0.00 2.90
157 158 5.646793 GGGGGATTTTTGTAGTGAGAAGTAC 59.353 44.000 0.00 0.00 0.00 2.73
158 159 5.311121 TGGGGGATTTTTGTAGTGAGAAGTA 59.689 40.000 0.00 0.00 0.00 2.24
159 160 4.105697 TGGGGGATTTTTGTAGTGAGAAGT 59.894 41.667 0.00 0.00 0.00 3.01
160 161 4.662278 TGGGGGATTTTTGTAGTGAGAAG 58.338 43.478 0.00 0.00 0.00 2.85
161 162 4.733077 TGGGGGATTTTTGTAGTGAGAA 57.267 40.909 0.00 0.00 0.00 2.87
162 163 4.141135 TGTTGGGGGATTTTTGTAGTGAGA 60.141 41.667 0.00 0.00 0.00 3.27
163 164 4.148838 TGTTGGGGGATTTTTGTAGTGAG 58.851 43.478 0.00 0.00 0.00 3.51
164 165 4.186077 TGTTGGGGGATTTTTGTAGTGA 57.814 40.909 0.00 0.00 0.00 3.41
165 166 4.946478 TTGTTGGGGGATTTTTGTAGTG 57.054 40.909 0.00 0.00 0.00 2.74
166 167 6.508030 AAATTGTTGGGGGATTTTTGTAGT 57.492 33.333 0.00 0.00 0.00 2.73
167 168 6.995091 TGAAAATTGTTGGGGGATTTTTGTAG 59.005 34.615 0.00 0.00 34.22 2.74
168 169 6.768381 GTGAAAATTGTTGGGGGATTTTTGTA 59.232 34.615 0.00 0.00 34.22 2.41
169 170 5.592282 GTGAAAATTGTTGGGGGATTTTTGT 59.408 36.000 0.00 0.00 34.22 2.83
170 171 5.827267 AGTGAAAATTGTTGGGGGATTTTTG 59.173 36.000 0.00 0.00 34.22 2.44
171 172 6.012337 AGTGAAAATTGTTGGGGGATTTTT 57.988 33.333 0.00 0.00 34.22 1.94
172 173 5.645056 AGTGAAAATTGTTGGGGGATTTT 57.355 34.783 0.00 0.00 36.12 1.82
173 174 5.645056 AAGTGAAAATTGTTGGGGGATTT 57.355 34.783 0.00 0.00 0.00 2.17
174 175 5.645056 AAAGTGAAAATTGTTGGGGGATT 57.355 34.783 0.00 0.00 0.00 3.01
175 176 5.645056 AAAAGTGAAAATTGTTGGGGGAT 57.355 34.783 0.00 0.00 0.00 3.85
176 177 5.443230 AAAAAGTGAAAATTGTTGGGGGA 57.557 34.783 0.00 0.00 0.00 4.81
195 196 4.881273 AGTGACACATGAGCTACACAAAAA 59.119 37.500 8.59 0.00 0.00 1.94
196 197 4.273235 CAGTGACACATGAGCTACACAAAA 59.727 41.667 8.59 0.00 0.00 2.44
197 198 3.809279 CAGTGACACATGAGCTACACAAA 59.191 43.478 8.59 0.00 0.00 2.83
198 199 3.181466 ACAGTGACACATGAGCTACACAA 60.181 43.478 8.59 0.00 0.00 3.33
199 200 2.365293 ACAGTGACACATGAGCTACACA 59.635 45.455 8.59 0.00 0.00 3.72
200 201 3.032017 ACAGTGACACATGAGCTACAC 57.968 47.619 8.59 3.77 0.00 2.90
201 202 5.405935 AATACAGTGACACATGAGCTACA 57.594 39.130 8.59 0.00 0.00 2.74
202 203 6.454318 CGAAAATACAGTGACACATGAGCTAC 60.454 42.308 8.59 0.00 0.00 3.58
203 204 5.576774 CGAAAATACAGTGACACATGAGCTA 59.423 40.000 8.59 0.00 0.00 3.32
204 205 4.389992 CGAAAATACAGTGACACATGAGCT 59.610 41.667 8.59 0.00 0.00 4.09
205 206 4.641954 CGAAAATACAGTGACACATGAGC 58.358 43.478 8.59 0.00 0.00 4.26
206 207 4.152223 TGCGAAAATACAGTGACACATGAG 59.848 41.667 8.59 0.00 0.00 2.90
207 208 4.061596 TGCGAAAATACAGTGACACATGA 58.938 39.130 8.59 0.00 0.00 3.07
208 209 4.403015 TGCGAAAATACAGTGACACATG 57.597 40.909 8.59 5.98 0.00 3.21
209 210 4.694982 TCATGCGAAAATACAGTGACACAT 59.305 37.500 8.59 0.00 0.00 3.21
210 211 4.061596 TCATGCGAAAATACAGTGACACA 58.938 39.130 8.59 0.00 0.00 3.72
211 212 4.661993 TCATGCGAAAATACAGTGACAC 57.338 40.909 0.00 0.00 0.00 3.67
212 213 5.878332 ATTCATGCGAAAATACAGTGACA 57.122 34.783 0.00 0.00 34.01 3.58
213 214 8.841444 AAATATTCATGCGAAAATACAGTGAC 57.159 30.769 0.00 0.00 34.01 3.67
214 215 9.502145 GAAAATATTCATGCGAAAATACAGTGA 57.498 29.630 0.00 0.00 35.54 3.41
215 216 9.288124 TGAAAATATTCATGCGAAAATACAGTG 57.712 29.630 0.00 0.00 40.59 3.66
216 217 9.289303 GTGAAAATATTCATGCGAAAATACAGT 57.711 29.630 0.00 0.00 46.67 3.55
217 218 9.288124 TGTGAAAATATTCATGCGAAAATACAG 57.712 29.630 0.00 0.00 46.67 2.74
218 219 9.071221 GTGTGAAAATATTCATGCGAAAATACA 57.929 29.630 0.00 0.00 46.67 2.29
219 220 9.071221 TGTGTGAAAATATTCATGCGAAAATAC 57.929 29.630 0.00 0.00 46.67 1.89
220 221 9.800433 ATGTGTGAAAATATTCATGCGAAAATA 57.200 25.926 0.00 0.00 46.67 1.40
221 222 8.597227 CATGTGTGAAAATATTCATGCGAAAAT 58.403 29.630 0.00 0.00 46.67 1.82
222 223 7.598118 ACATGTGTGAAAATATTCATGCGAAAA 59.402 29.630 0.00 0.00 46.67 2.29
223 224 7.089538 ACATGTGTGAAAATATTCATGCGAAA 58.910 30.769 0.00 0.00 46.67 3.46
224 225 6.619744 ACATGTGTGAAAATATTCATGCGAA 58.380 32.000 0.00 0.00 46.67 4.70
225 226 6.193514 ACATGTGTGAAAATATTCATGCGA 57.806 33.333 0.00 0.00 46.67 5.10
226 227 8.473796 CAATACATGTGTGAAAATATTCATGCG 58.526 33.333 9.11 0.00 46.67 4.73
227 228 9.518906 TCAATACATGTGTGAAAATATTCATGC 57.481 29.630 9.11 0.00 46.67 4.06
246 247 7.700656 CACACTGACGTATAGATGTTCAATACA 59.299 37.037 6.33 0.00 41.97 2.29
247 248 7.701078 ACACACTGACGTATAGATGTTCAATAC 59.299 37.037 6.33 0.00 0.00 1.89
248 249 7.768240 ACACACTGACGTATAGATGTTCAATA 58.232 34.615 6.33 0.00 0.00 1.90
249 250 6.631016 ACACACTGACGTATAGATGTTCAAT 58.369 36.000 6.33 0.00 0.00 2.57
250 251 6.020971 ACACACTGACGTATAGATGTTCAA 57.979 37.500 6.33 0.00 0.00 2.69
251 252 5.638596 ACACACTGACGTATAGATGTTCA 57.361 39.130 6.33 0.00 0.00 3.18
252 253 8.532341 CAATTACACACTGACGTATAGATGTTC 58.468 37.037 14.31 0.00 0.00 3.18
253 254 8.033038 ACAATTACACACTGACGTATAGATGTT 58.967 33.333 14.31 6.88 0.00 2.71
254 255 7.544622 ACAATTACACACTGACGTATAGATGT 58.455 34.615 6.33 10.97 0.00 3.06
255 256 7.987268 ACAATTACACACTGACGTATAGATG 57.013 36.000 6.33 6.56 0.00 2.90
256 257 8.997621 AAACAATTACACACTGACGTATAGAT 57.002 30.769 6.33 0.00 0.00 1.98
257 258 7.543172 GGAAACAATTACACACTGACGTATAGA 59.457 37.037 6.33 0.00 0.00 1.98
258 259 7.329962 TGGAAACAATTACACACTGACGTATAG 59.670 37.037 0.00 0.00 37.44 1.31
259 260 7.153315 TGGAAACAATTACACACTGACGTATA 58.847 34.615 0.00 0.00 37.44 1.47
260 261 5.992829 TGGAAACAATTACACACTGACGTAT 59.007 36.000 0.00 0.00 37.44 3.06
261 262 5.358090 TGGAAACAATTACACACTGACGTA 58.642 37.500 0.00 0.00 37.44 3.57
262 263 4.193090 TGGAAACAATTACACACTGACGT 58.807 39.130 0.00 0.00 37.44 4.34
263 264 4.509970 TCTGGAAACAATTACACACTGACG 59.490 41.667 0.00 0.00 42.06 4.35
264 265 6.371809 TTCTGGAAACAATTACACACTGAC 57.628 37.500 0.00 0.00 42.06 3.51
265 266 7.581213 AATTCTGGAAACAATTACACACTGA 57.419 32.000 0.00 0.00 42.06 3.41
266 267 8.647143 AAAATTCTGGAAACAATTACACACTG 57.353 30.769 0.00 0.00 42.06 3.66
298 299 9.840427 CGAAATGTTAAAGAACCACATCTAATT 57.160 29.630 0.00 0.00 34.38 1.40
299 300 9.226606 TCGAAATGTTAAAGAACCACATCTAAT 57.773 29.630 0.00 0.00 34.38 1.73
300 301 8.610248 TCGAAATGTTAAAGAACCACATCTAA 57.390 30.769 0.00 0.00 34.38 2.10
301 302 8.610248 TTCGAAATGTTAAAGAACCACATCTA 57.390 30.769 0.00 0.00 34.38 1.98
302 303 7.504924 TTCGAAATGTTAAAGAACCACATCT 57.495 32.000 0.00 0.00 34.38 2.90
303 304 7.646130 TGTTTCGAAATGTTAAAGAACCACATC 59.354 33.333 14.69 0.00 34.38 3.06
304 305 7.484975 TGTTTCGAAATGTTAAAGAACCACAT 58.515 30.769 14.69 0.00 34.38 3.21
305 306 6.853720 TGTTTCGAAATGTTAAAGAACCACA 58.146 32.000 14.69 0.00 34.38 4.17
306 307 7.606131 GTTGTTTCGAAATGTTAAAGAACCAC 58.394 34.615 14.69 0.00 32.95 4.16
307 308 7.743520 GTTGTTTCGAAATGTTAAAGAACCA 57.256 32.000 14.69 0.00 32.95 3.67
308 309 7.157050 GGTTGTTTCGAAATGTTAAAGAACC 57.843 36.000 14.69 10.13 44.28 3.62
309 310 7.743520 TGGTTGTTTCGAAATGTTAAAGAAC 57.256 32.000 14.69 4.65 36.30 3.01
310 311 7.009723 GCTTGGTTGTTTCGAAATGTTAAAGAA 59.990 33.333 14.69 0.00 0.00 2.52
311 312 6.474102 GCTTGGTTGTTTCGAAATGTTAAAGA 59.526 34.615 14.69 0.00 0.00 2.52
312 313 6.475402 AGCTTGGTTGTTTCGAAATGTTAAAG 59.525 34.615 14.69 15.23 0.00 1.85
313 314 6.334202 AGCTTGGTTGTTTCGAAATGTTAAA 58.666 32.000 14.69 6.06 0.00 1.52
314 315 5.897050 AGCTTGGTTGTTTCGAAATGTTAA 58.103 33.333 14.69 4.98 0.00 2.01
315 316 5.298276 AGAGCTTGGTTGTTTCGAAATGTTA 59.702 36.000 14.69 0.00 0.00 2.41
316 317 4.097892 AGAGCTTGGTTGTTTCGAAATGTT 59.902 37.500 14.69 0.00 0.00 2.71
317 318 3.632145 AGAGCTTGGTTGTTTCGAAATGT 59.368 39.130 14.69 0.00 0.00 2.71
318 319 4.228912 AGAGCTTGGTTGTTTCGAAATG 57.771 40.909 14.69 0.72 0.00 2.32
319 320 5.106157 CCATAGAGCTTGGTTGTTTCGAAAT 60.106 40.000 14.69 0.00 0.00 2.17
320 321 4.215399 CCATAGAGCTTGGTTGTTTCGAAA 59.785 41.667 6.47 6.47 0.00 3.46
321 322 3.751175 CCATAGAGCTTGGTTGTTTCGAA 59.249 43.478 0.00 0.00 0.00 3.71
322 323 3.007506 TCCATAGAGCTTGGTTGTTTCGA 59.992 43.478 2.88 0.00 35.64 3.71
323 324 3.334691 TCCATAGAGCTTGGTTGTTTCG 58.665 45.455 2.88 0.00 35.64 3.46
324 325 4.954092 CTCCATAGAGCTTGGTTGTTTC 57.046 45.455 2.88 0.00 35.64 2.78
346 347 0.248458 AAAGTCGTTTGGTGCGCAAG 60.248 50.000 14.00 0.00 43.44 4.01
347 348 0.248296 GAAAGTCGTTTGGTGCGCAA 60.248 50.000 14.00 0.00 0.00 4.85
348 349 1.353804 GAAAGTCGTTTGGTGCGCA 59.646 52.632 5.66 5.66 0.00 6.09
349 350 1.370051 GGAAAGTCGTTTGGTGCGC 60.370 57.895 0.00 0.00 0.00 6.09
350 351 0.041312 CAGGAAAGTCGTTTGGTGCG 60.041 55.000 0.00 0.00 0.00 5.34
351 352 1.021968 ACAGGAAAGTCGTTTGGTGC 58.978 50.000 0.00 0.00 0.00 5.01
352 353 3.463944 ACTACAGGAAAGTCGTTTGGTG 58.536 45.455 0.00 0.00 0.00 4.17
353 354 3.832615 ACTACAGGAAAGTCGTTTGGT 57.167 42.857 0.00 0.00 0.00 3.67
354 355 3.875134 ACAACTACAGGAAAGTCGTTTGG 59.125 43.478 0.00 0.00 0.00 3.28
355 356 5.333111 GCTACAACTACAGGAAAGTCGTTTG 60.333 44.000 0.00 0.00 0.00 2.93
356 357 4.748600 GCTACAACTACAGGAAAGTCGTTT 59.251 41.667 0.00 0.00 0.00 3.60
357 358 4.202182 TGCTACAACTACAGGAAAGTCGTT 60.202 41.667 0.00 0.00 0.00 3.85
358 359 3.319972 TGCTACAACTACAGGAAAGTCGT 59.680 43.478 0.00 0.00 0.00 4.34
359 360 3.909430 TGCTACAACTACAGGAAAGTCG 58.091 45.455 0.00 0.00 0.00 4.18
360 361 3.680458 GCTGCTACAACTACAGGAAAGTC 59.320 47.826 0.00 0.00 31.94 3.01
361 362 3.071023 TGCTGCTACAACTACAGGAAAGT 59.929 43.478 0.00 0.00 31.94 2.66
362 363 3.664107 TGCTGCTACAACTACAGGAAAG 58.336 45.455 0.00 0.00 31.94 2.62
363 364 3.664107 CTGCTGCTACAACTACAGGAAA 58.336 45.455 0.00 0.00 31.04 3.13
364 365 2.612972 GCTGCTGCTACAACTACAGGAA 60.613 50.000 8.53 0.00 31.04 3.36
365 366 1.066858 GCTGCTGCTACAACTACAGGA 60.067 52.381 8.53 0.00 36.03 3.86
366 367 1.338105 TGCTGCTGCTACAACTACAGG 60.338 52.381 17.00 0.00 40.48 4.00
367 368 2.084610 TGCTGCTGCTACAACTACAG 57.915 50.000 17.00 0.00 40.48 2.74
368 369 2.037121 TCTTGCTGCTGCTACAACTACA 59.963 45.455 17.00 0.00 40.48 2.74
369 370 2.688507 TCTTGCTGCTGCTACAACTAC 58.311 47.619 17.00 0.00 40.48 2.73
370 371 3.006859 TCTTCTTGCTGCTGCTACAACTA 59.993 43.478 17.00 0.00 40.48 2.24
371 372 2.149578 CTTCTTGCTGCTGCTACAACT 58.850 47.619 17.00 0.00 40.48 3.16
372 373 2.146342 TCTTCTTGCTGCTGCTACAAC 58.854 47.619 17.00 0.00 40.48 3.32
373 374 2.549064 TCTTCTTGCTGCTGCTACAA 57.451 45.000 17.00 4.52 40.48 2.41
374 375 2.146342 GTTCTTCTTGCTGCTGCTACA 58.854 47.619 17.00 0.00 40.48 2.74
375 376 2.146342 TGTTCTTCTTGCTGCTGCTAC 58.854 47.619 17.00 4.48 40.48 3.58
376 377 2.549064 TGTTCTTCTTGCTGCTGCTA 57.451 45.000 17.00 8.35 40.48 3.49
377 378 1.683943 TTGTTCTTCTTGCTGCTGCT 58.316 45.000 17.00 0.00 40.48 4.24
378 379 2.719426 ATTGTTCTTCTTGCTGCTGC 57.281 45.000 8.89 8.89 40.20 5.25
379 380 5.112220 TGTTATTGTTCTTCTTGCTGCTG 57.888 39.130 0.00 0.00 0.00 4.41
380 381 5.067674 TGTTGTTATTGTTCTTCTTGCTGCT 59.932 36.000 0.00 0.00 0.00 4.24
381 382 5.280945 TGTTGTTATTGTTCTTCTTGCTGC 58.719 37.500 0.00 0.00 0.00 5.25
382 383 7.935338 ATTGTTGTTATTGTTCTTCTTGCTG 57.065 32.000 0.00 0.00 0.00 4.41
383 384 7.042523 GCAATTGTTGTTATTGTTCTTCTTGCT 60.043 33.333 7.40 0.00 35.82 3.91
384 385 7.042523 AGCAATTGTTGTTATTGTTCTTCTTGC 60.043 33.333 7.40 0.00 35.82 4.01
385 386 8.356533 AGCAATTGTTGTTATTGTTCTTCTTG 57.643 30.769 7.40 0.00 35.82 3.02
386 387 9.463443 GTAGCAATTGTTGTTATTGTTCTTCTT 57.537 29.630 7.40 0.00 35.82 2.52
387 388 8.850156 AGTAGCAATTGTTGTTATTGTTCTTCT 58.150 29.630 7.40 0.00 35.82 2.85
389 390 9.893305 GTAGTAGCAATTGTTGTTATTGTTCTT 57.107 29.630 7.40 0.00 35.82 2.52
390 391 9.062524 TGTAGTAGCAATTGTTGTTATTGTTCT 57.937 29.630 7.40 0.00 35.82 3.01
391 392 9.672086 TTGTAGTAGCAATTGTTGTTATTGTTC 57.328 29.630 7.40 0.00 35.82 3.18
392 393 9.458374 GTTGTAGTAGCAATTGTTGTTATTGTT 57.542 29.630 7.40 0.00 35.82 2.83
393 394 8.625651 TGTTGTAGTAGCAATTGTTGTTATTGT 58.374 29.630 7.40 0.00 35.82 2.71
394 395 8.901748 GTGTTGTAGTAGCAATTGTTGTTATTG 58.098 33.333 7.40 0.00 36.34 1.90
395 396 8.079809 GGTGTTGTAGTAGCAATTGTTGTTATT 58.920 33.333 7.40 0.00 0.00 1.40
396 397 7.229707 TGGTGTTGTAGTAGCAATTGTTGTTAT 59.770 33.333 7.40 0.00 0.00 1.89
397 398 6.542735 TGGTGTTGTAGTAGCAATTGTTGTTA 59.457 34.615 7.40 0.00 0.00 2.41
398 399 5.358442 TGGTGTTGTAGTAGCAATTGTTGTT 59.642 36.000 7.40 0.00 0.00 2.83
399 400 4.884744 TGGTGTTGTAGTAGCAATTGTTGT 59.115 37.500 7.40 0.00 0.00 3.32
400 401 5.212194 GTGGTGTTGTAGTAGCAATTGTTG 58.788 41.667 7.40 0.00 0.00 3.33
401 402 4.277423 GGTGGTGTTGTAGTAGCAATTGTT 59.723 41.667 7.40 3.27 0.00 2.83
402 403 3.818773 GGTGGTGTTGTAGTAGCAATTGT 59.181 43.478 7.40 0.00 0.00 2.71
403 404 3.818210 TGGTGGTGTTGTAGTAGCAATTG 59.182 43.478 0.00 0.00 0.00 2.32
404 405 3.818773 GTGGTGGTGTTGTAGTAGCAATT 59.181 43.478 0.00 0.00 0.00 2.32
405 406 3.408634 GTGGTGGTGTTGTAGTAGCAAT 58.591 45.455 0.00 0.00 0.00 3.56
406 407 2.485835 GGTGGTGGTGTTGTAGTAGCAA 60.486 50.000 0.00 0.00 0.00 3.91
407 408 1.071071 GGTGGTGGTGTTGTAGTAGCA 59.929 52.381 0.00 0.00 0.00 3.49
408 409 1.071071 TGGTGGTGGTGTTGTAGTAGC 59.929 52.381 0.00 0.00 0.00 3.58
409 410 3.135994 GTTGGTGGTGGTGTTGTAGTAG 58.864 50.000 0.00 0.00 0.00 2.57
410 411 2.483363 CGTTGGTGGTGGTGTTGTAGTA 60.483 50.000 0.00 0.00 0.00 1.82
411 412 1.744456 CGTTGGTGGTGGTGTTGTAGT 60.744 52.381 0.00 0.00 0.00 2.73
412 413 0.941542 CGTTGGTGGTGGTGTTGTAG 59.058 55.000 0.00 0.00 0.00 2.74
413 414 0.540454 TCGTTGGTGGTGGTGTTGTA 59.460 50.000 0.00 0.00 0.00 2.41
414 415 0.746563 CTCGTTGGTGGTGGTGTTGT 60.747 55.000 0.00 0.00 0.00 3.32
415 416 0.462937 TCTCGTTGGTGGTGGTGTTG 60.463 55.000 0.00 0.00 0.00 3.33
416 417 0.253610 TTCTCGTTGGTGGTGGTGTT 59.746 50.000 0.00 0.00 0.00 3.32
417 418 0.463116 GTTCTCGTTGGTGGTGGTGT 60.463 55.000 0.00 0.00 0.00 4.16
418 419 0.462937 TGTTCTCGTTGGTGGTGGTG 60.463 55.000 0.00 0.00 0.00 4.17
419 420 0.253610 TTGTTCTCGTTGGTGGTGGT 59.746 50.000 0.00 0.00 0.00 4.16
420 421 0.661020 GTTGTTCTCGTTGGTGGTGG 59.339 55.000 0.00 0.00 0.00 4.61
421 422 1.374560 TGTTGTTCTCGTTGGTGGTG 58.625 50.000 0.00 0.00 0.00 4.17
422 423 2.341846 ATGTTGTTCTCGTTGGTGGT 57.658 45.000 0.00 0.00 0.00 4.16
423 424 6.489127 TTTATATGTTGTTCTCGTTGGTGG 57.511 37.500 0.00 0.00 0.00 4.61
477 478 9.584008 TGGATCGAAGGAATTATTACTACTACT 57.416 33.333 0.00 0.00 0.00 2.57
488 489 9.706691 GACAAGTAATATGGATCGAAGGAATTA 57.293 33.333 0.00 0.00 0.00 1.40
489 490 8.432805 AGACAAGTAATATGGATCGAAGGAATT 58.567 33.333 0.00 0.00 0.00 2.17
490 491 7.967908 AGACAAGTAATATGGATCGAAGGAAT 58.032 34.615 0.00 0.00 0.00 3.01
491 492 7.361457 AGACAAGTAATATGGATCGAAGGAA 57.639 36.000 0.00 0.00 0.00 3.36
492 493 6.978674 AGACAAGTAATATGGATCGAAGGA 57.021 37.500 0.00 0.00 0.00 3.36
493 494 8.577296 TCTAAGACAAGTAATATGGATCGAAGG 58.423 37.037 0.00 0.00 0.00 3.46
508 509 8.842280 CCGTATCTAGAGAAATCTAAGACAAGT 58.158 37.037 0.00 0.00 0.00 3.16
509 510 9.058174 TCCGTATCTAGAGAAATCTAAGACAAG 57.942 37.037 0.00 0.00 0.00 3.16
510 511 8.975663 TCCGTATCTAGAGAAATCTAAGACAA 57.024 34.615 0.00 0.00 0.00 3.18
511 512 8.975663 TTCCGTATCTAGAGAAATCTAAGACA 57.024 34.615 0.00 0.00 0.00 3.41
512 513 8.508875 CCTTCCGTATCTAGAGAAATCTAAGAC 58.491 40.741 0.00 0.00 0.00 3.01
513 514 8.438373 TCCTTCCGTATCTAGAGAAATCTAAGA 58.562 37.037 0.00 0.00 0.00 2.10
514 515 8.624367 TCCTTCCGTATCTAGAGAAATCTAAG 57.376 38.462 0.00 0.00 0.00 2.18
515 516 8.219178 ACTCCTTCCGTATCTAGAGAAATCTAA 58.781 37.037 0.00 0.00 0.00 2.10
516 517 7.747690 ACTCCTTCCGTATCTAGAGAAATCTA 58.252 38.462 0.00 0.00 0.00 1.98
517 518 6.607019 ACTCCTTCCGTATCTAGAGAAATCT 58.393 40.000 0.00 0.00 0.00 2.40
518 519 6.887626 ACTCCTTCCGTATCTAGAGAAATC 57.112 41.667 0.00 0.00 0.00 2.17
519 520 8.943594 ATTACTCCTTCCGTATCTAGAGAAAT 57.056 34.615 0.00 0.00 0.00 2.17
520 521 9.857656 TTATTACTCCTTCCGTATCTAGAGAAA 57.142 33.333 0.00 0.00 0.00 2.52
529 530 9.734984 CCCAAATTATTATTACTCCTTCCGTAT 57.265 33.333 0.00 0.00 0.00 3.06
558 559 3.806316 AGGACGCAACGAATAAGTTTG 57.194 42.857 0.00 0.00 30.96 2.93
569 570 5.049954 TGAAACTGTTATTGTAGGACGCAAC 60.050 40.000 0.00 0.00 0.00 4.17
597 598 1.955778 TGTGTTTGAGAGCAACCCATG 59.044 47.619 0.00 0.00 32.79 3.66
598 599 1.956477 GTGTGTTTGAGAGCAACCCAT 59.044 47.619 0.00 0.00 32.79 4.00
599 600 1.340502 TGTGTGTTTGAGAGCAACCCA 60.341 47.619 0.00 0.00 32.79 4.51
600 601 1.065551 GTGTGTGTTTGAGAGCAACCC 59.934 52.381 0.00 0.00 32.79 4.11
601 602 1.268032 CGTGTGTGTTTGAGAGCAACC 60.268 52.381 0.00 0.00 32.79 3.77
602 603 1.856014 GCGTGTGTGTTTGAGAGCAAC 60.856 52.381 0.00 0.00 32.79 4.17
603 604 0.376852 GCGTGTGTGTTTGAGAGCAA 59.623 50.000 0.00 0.00 0.00 3.91
604 605 1.761244 CGCGTGTGTGTTTGAGAGCA 61.761 55.000 0.00 0.00 0.00 4.26
605 606 1.083401 CGCGTGTGTGTTTGAGAGC 60.083 57.895 0.00 0.00 0.00 4.09
606 607 1.083401 GCGCGTGTGTGTTTGAGAG 60.083 57.895 8.43 0.00 0.00 3.20
607 608 2.866010 CGCGCGTGTGTGTTTGAGA 61.866 57.895 24.19 0.00 0.00 3.27
608 609 2.423517 CGCGCGTGTGTGTTTGAG 60.424 61.111 24.19 0.00 0.00 3.02
609 610 4.583254 GCGCGCGTGTGTGTTTGA 62.583 61.111 32.35 0.00 0.00 2.69
625 626 4.649954 GTGTCTGTGTGTGCGCGC 62.650 66.667 27.26 27.26 0.00 6.86
626 627 3.261216 TGTGTCTGTGTGTGCGCG 61.261 61.111 0.00 0.00 0.00 6.86
627 628 2.324477 GTGTGTCTGTGTGTGCGC 59.676 61.111 0.00 0.00 0.00 6.09
628 629 1.348250 GTGTGTGTCTGTGTGTGCG 59.652 57.895 0.00 0.00 0.00 5.34
629 630 0.096976 GTGTGTGTGTCTGTGTGTGC 59.903 55.000 0.00 0.00 0.00 4.57
630 631 1.128507 GTGTGTGTGTGTCTGTGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
631 632 1.270571 TGTGTGTGTGTGTCTGTGTGT 60.271 47.619 0.00 0.00 0.00 3.72
632 633 1.437625 TGTGTGTGTGTGTCTGTGTG 58.562 50.000 0.00 0.00 0.00 3.82
633 634 2.009051 CATGTGTGTGTGTGTCTGTGT 58.991 47.619 0.00 0.00 0.00 3.72
634 635 1.268184 GCATGTGTGTGTGTGTCTGTG 60.268 52.381 0.00 0.00 0.00 3.66
635 636 1.016627 GCATGTGTGTGTGTGTCTGT 58.983 50.000 0.00 0.00 0.00 3.41
636 637 1.015868 TGCATGTGTGTGTGTGTCTG 58.984 50.000 0.00 0.00 0.00 3.51
637 638 1.605232 CATGCATGTGTGTGTGTGTCT 59.395 47.619 18.91 0.00 0.00 3.41
638 639 1.334556 ACATGCATGTGTGTGTGTGTC 59.665 47.619 30.92 0.00 40.03 3.67
639 640 1.391577 ACATGCATGTGTGTGTGTGT 58.608 45.000 30.92 3.77 40.03 3.72
649 650 2.100749 CAGCATTGATCCACATGCATGT 59.899 45.455 26.61 26.61 42.06 3.21
650 651 2.545742 CCAGCATTGATCCACATGCATG 60.546 50.000 25.09 25.09 42.06 4.06
651 652 1.686587 CCAGCATTGATCCACATGCAT 59.313 47.619 18.69 0.00 42.06 3.96
652 653 1.107945 CCAGCATTGATCCACATGCA 58.892 50.000 18.69 0.00 42.06 3.96
653 654 0.387929 CCCAGCATTGATCCACATGC 59.612 55.000 11.79 11.79 40.09 4.06
654 655 1.037493 CCCCAGCATTGATCCACATG 58.963 55.000 0.00 0.00 0.00 3.21
655 656 0.105862 CCCCCAGCATTGATCCACAT 60.106 55.000 0.00 0.00 0.00 3.21
656 657 1.307309 CCCCCAGCATTGATCCACA 59.693 57.895 0.00 0.00 0.00 4.17
657 658 2.129785 GCCCCCAGCATTGATCCAC 61.130 63.158 0.00 0.00 42.97 4.02
658 659 2.279743 GCCCCCAGCATTGATCCA 59.720 61.111 0.00 0.00 42.97 3.41
667 668 4.195334 ATCCGTCATGCCCCCAGC 62.195 66.667 0.00 0.00 44.14 4.85
668 669 2.060567 ATGATCCGTCATGCCCCCAG 62.061 60.000 0.00 0.00 43.35 4.45
669 670 2.078044 ATGATCCGTCATGCCCCCA 61.078 57.895 0.00 0.00 43.35 4.96
670 671 2.839098 ATGATCCGTCATGCCCCC 59.161 61.111 0.00 0.00 43.35 5.40
676 677 2.697229 TCTCAAGAGCATGATCCGTCAT 59.303 45.455 7.49 0.00 45.87 3.06
677 678 2.100418 CTCTCAAGAGCATGATCCGTCA 59.900 50.000 7.49 0.00 35.54 4.35
678 679 2.545532 CCTCTCAAGAGCATGATCCGTC 60.546 54.545 7.49 0.00 40.75 4.79
679 680 1.411977 CCTCTCAAGAGCATGATCCGT 59.588 52.381 7.49 0.00 40.75 4.69
680 681 1.411977 ACCTCTCAAGAGCATGATCCG 59.588 52.381 7.49 0.00 40.75 4.18
681 682 3.554752 GCTACCTCTCAAGAGCATGATCC 60.555 52.174 7.49 0.00 40.75 3.36
682 683 3.069300 TGCTACCTCTCAAGAGCATGATC 59.931 47.826 1.78 1.78 39.93 2.92
683 684 3.036819 TGCTACCTCTCAAGAGCATGAT 58.963 45.455 0.00 0.00 39.93 2.45
684 685 2.429971 CTGCTACCTCTCAAGAGCATGA 59.570 50.000 0.00 0.00 43.61 3.07
685 686 2.823984 CTGCTACCTCTCAAGAGCATG 58.176 52.381 1.28 0.00 43.61 4.06
686 687 1.138661 GCTGCTACCTCTCAAGAGCAT 59.861 52.381 1.28 0.00 43.61 3.79
687 688 0.534412 GCTGCTACCTCTCAAGAGCA 59.466 55.000 1.28 0.00 42.47 4.26
688 689 0.534412 TGCTGCTACCTCTCAAGAGC 59.466 55.000 0.00 0.00 40.75 4.09
689 690 2.429971 TCATGCTGCTACCTCTCAAGAG 59.570 50.000 0.00 0.00 41.71 2.85
690 691 2.460669 TCATGCTGCTACCTCTCAAGA 58.539 47.619 0.00 0.00 0.00 3.02
748 749 3.120385 TCCAAGCATGCGTCGCTG 61.120 61.111 19.50 14.54 40.35 5.18
750 751 2.753966 ATGTCCAAGCATGCGTCGC 61.754 57.895 13.01 11.10 0.00 5.19
802 805 6.652062 CACCTATCATCATGCAAGCTATGTTA 59.348 38.462 0.00 0.00 0.00 2.41
803 806 5.472478 CACCTATCATCATGCAAGCTATGTT 59.528 40.000 0.00 0.00 0.00 2.71
805 808 5.243207 TCACCTATCATCATGCAAGCTATG 58.757 41.667 0.00 0.00 0.00 2.23
806 809 5.494390 TCACCTATCATCATGCAAGCTAT 57.506 39.130 0.00 0.00 0.00 2.97
807 810 4.961438 TCACCTATCATCATGCAAGCTA 57.039 40.909 0.00 0.00 0.00 3.32
808 811 3.851458 TCACCTATCATCATGCAAGCT 57.149 42.857 0.00 0.00 0.00 3.74
809 812 4.906065 TTTCACCTATCATCATGCAAGC 57.094 40.909 0.00 0.00 0.00 4.01
831 839 6.292811 GGTGCATTCGATTTGTGTGAATTTTT 60.293 34.615 0.00 0.00 30.23 1.94
836 844 2.884012 AGGTGCATTCGATTTGTGTGAA 59.116 40.909 0.00 0.00 0.00 3.18
851 859 0.384309 GTATGATCGACCGAGGTGCA 59.616 55.000 0.00 0.00 0.00 4.57
860 868 4.210832 TCATCACGAGTGTATGATCGAC 57.789 45.455 2.97 0.00 41.40 4.20
863 871 4.240888 CCCATCATCACGAGTGTATGATC 58.759 47.826 18.88 0.00 36.57 2.92
883 891 2.224769 TGAGGTGAAGGTGAATTGACCC 60.225 50.000 10.79 0.00 37.16 4.46
888 896 2.443255 ACAGGTGAGGTGAAGGTGAATT 59.557 45.455 0.00 0.00 0.00 2.17
890 898 1.507140 ACAGGTGAGGTGAAGGTGAA 58.493 50.000 0.00 0.00 0.00 3.18
891 899 2.391926 TACAGGTGAGGTGAAGGTGA 57.608 50.000 0.00 0.00 0.00 4.02
892 900 2.355108 CCATACAGGTGAGGTGAAGGTG 60.355 54.545 0.00 0.00 0.00 4.00
893 901 1.909302 CCATACAGGTGAGGTGAAGGT 59.091 52.381 0.00 0.00 0.00 3.50
894 902 1.407437 GCCATACAGGTGAGGTGAAGG 60.407 57.143 0.00 0.00 40.61 3.46
895 903 1.407437 GGCCATACAGGTGAGGTGAAG 60.407 57.143 0.00 0.00 40.61 3.02
896 904 0.618458 GGCCATACAGGTGAGGTGAA 59.382 55.000 0.00 0.00 40.61 3.18
897 905 0.546507 TGGCCATACAGGTGAGGTGA 60.547 55.000 0.00 0.00 40.61 4.02
898 906 0.548031 ATGGCCATACAGGTGAGGTG 59.452 55.000 19.18 0.00 40.61 4.00
899 907 2.190398 TATGGCCATACAGGTGAGGT 57.810 50.000 21.94 0.00 40.61 3.85
900 908 5.425217 TGTATATATGGCCATACAGGTGAGG 59.575 44.000 27.72 0.00 40.61 3.86
901 909 6.544928 TGTATATATGGCCATACAGGTGAG 57.455 41.667 27.72 0.00 40.61 3.51
902 910 7.844269 AGTATGTATATATGGCCATACAGGTGA 59.156 37.037 27.72 6.03 41.20 4.02
903 911 8.023021 AGTATGTATATATGGCCATACAGGTG 57.977 38.462 27.72 0.00 41.20 4.00
904 912 8.486210 CAAGTATGTATATATGGCCATACAGGT 58.514 37.037 27.72 14.32 41.20 4.00
905 913 8.486210 ACAAGTATGTATATATGGCCATACAGG 58.514 37.037 27.72 12.66 41.20 4.00
906 914 9.890629 AACAAGTATGTATATATGGCCATACAG 57.109 33.333 27.72 13.07 41.20 2.74
907 915 9.665719 CAACAAGTATGTATATATGGCCATACA 57.334 33.333 27.72 22.90 41.20 2.29
908 916 8.612619 GCAACAAGTATGTATATATGGCCATAC 58.387 37.037 27.72 17.85 39.40 2.39
924 932 5.108187 AGATGGATCAGTGCAACAAGTAT 57.892 39.130 0.00 0.00 41.43 2.12
962 980 0.182537 AGCTGGTGTGGTTTAGTGCA 59.817 50.000 0.00 0.00 0.00 4.57
998 1026 3.215151 CTCTCACCTCTAGACGCCATTA 58.785 50.000 0.00 0.00 0.00 1.90
1085 1117 6.790232 AGAAGAAGAAGGAGATGGAGTAAG 57.210 41.667 0.00 0.00 0.00 2.34
1096 1128 6.484977 GCAAAGAAGAAGAAGAAGAAGAAGGA 59.515 38.462 0.00 0.00 0.00 3.36
1133 1165 6.292381 GCCAAGATTGATCATCAGTACGTAAC 60.292 42.308 0.00 0.00 33.75 2.50
1134 1166 5.753438 GCCAAGATTGATCATCAGTACGTAA 59.247 40.000 0.00 0.00 33.75 3.18
1171 1203 3.487042 CGTGAGATCAACACCCTACGTAG 60.487 52.174 15.92 15.92 35.17 3.51
1174 1206 1.469251 CCGTGAGATCAACACCCTACG 60.469 57.143 14.37 0.00 35.17 3.51
1175 1207 1.822990 TCCGTGAGATCAACACCCTAC 59.177 52.381 14.37 0.00 35.17 3.18
1293 1325 2.987547 GAGTCGTGTCCCGTGGGA 60.988 66.667 2.72 2.72 42.90 4.37
1306 1338 0.179158 GACCTCGGCGAAGAAGAGTC 60.179 60.000 13.21 8.09 32.28 3.36
1378 1410 6.636562 AGAACTAGGATTACGTACTGGATG 57.363 41.667 0.00 0.00 0.00 3.51
1414 1447 3.063997 GCATACTCAATATGTATGGGCGC 59.936 47.826 0.00 0.00 44.24 6.53
1415 1448 4.252878 TGCATACTCAATATGTATGGGCG 58.747 43.478 13.48 0.00 44.24 6.13
1426 1459 8.820933 GCGTGTCAATATATATGCATACTCAAT 58.179 33.333 8.99 3.52 0.00 2.57
1435 1468 5.862924 ACCAAGCGTGTCAATATATATGC 57.137 39.130 0.00 0.00 0.00 3.14
1448 1481 3.011949 AGTTGCAAATAACCAAGCGTG 57.988 42.857 0.00 0.00 0.00 5.34
1467 1500 0.315886 TGACCAAGCTGCATGCAAAG 59.684 50.000 22.88 12.33 45.94 2.77
1472 1505 2.129607 GTTTGTTGACCAAGCTGCATG 58.870 47.619 1.02 0.00 33.75 4.06
1501 1534 2.673368 GTGTCAGATACCGGAGCAAAAG 59.327 50.000 9.46 0.00 0.00 2.27
1519 1552 2.912025 CCGCTTGCTTTGGGGTGT 60.912 61.111 0.00 0.00 33.51 4.16
1525 1558 1.067916 AAAGGTGCCGCTTGCTTTG 59.932 52.632 0.00 0.00 42.00 2.77
1556 1589 2.229792 TGGTTGGTGCTTCATTCACTC 58.770 47.619 0.00 0.00 34.97 3.51
1572 1605 2.951229 ATTCGGAGTGGAAGTTGGTT 57.049 45.000 0.00 0.00 0.00 3.67
1633 1666 3.746492 GCCGGCAAGGTAATACTAATGAG 59.254 47.826 24.80 0.00 43.70 2.90
1634 1667 3.389983 AGCCGGCAAGGTAATACTAATGA 59.610 43.478 31.54 0.00 43.70 2.57
1635 1668 3.740115 AGCCGGCAAGGTAATACTAATG 58.260 45.455 31.54 0.00 43.70 1.90
1636 1669 4.432980 AAGCCGGCAAGGTAATACTAAT 57.567 40.909 31.54 0.00 43.70 1.73
1637 1670 3.918294 AAGCCGGCAAGGTAATACTAA 57.082 42.857 31.54 0.00 43.70 2.24
1638 1671 5.556006 ATTAAGCCGGCAAGGTAATACTA 57.444 39.130 31.54 0.00 43.70 1.82
1639 1672 3.918294 TTAAGCCGGCAAGGTAATACT 57.082 42.857 31.54 0.00 43.70 2.12
1640 1673 5.761726 ACTTATTAAGCCGGCAAGGTAATAC 59.238 40.000 31.54 0.00 43.70 1.89
1641 1674 5.932455 ACTTATTAAGCCGGCAAGGTAATA 58.068 37.500 31.54 23.84 43.70 0.98
1642 1675 4.788679 ACTTATTAAGCCGGCAAGGTAAT 58.211 39.130 31.54 24.79 43.70 1.89
1643 1676 4.224991 ACTTATTAAGCCGGCAAGGTAA 57.775 40.909 31.54 20.15 43.70 2.85
1644 1677 3.918294 ACTTATTAAGCCGGCAAGGTA 57.082 42.857 31.54 13.29 43.70 3.08
1645 1678 2.801077 ACTTATTAAGCCGGCAAGGT 57.199 45.000 31.54 14.40 43.70 3.50
1646 1679 3.537580 TGTACTTATTAAGCCGGCAAGG 58.462 45.455 31.54 13.11 44.97 3.61
1647 1680 5.751243 ATTGTACTTATTAAGCCGGCAAG 57.249 39.130 31.54 24.25 0.00 4.01
1648 1681 7.627298 TTTATTGTACTTATTAAGCCGGCAA 57.373 32.000 31.54 16.34 0.00 4.52
1649 1682 7.627298 TTTTATTGTACTTATTAAGCCGGCA 57.373 32.000 31.54 8.70 0.00 5.69
1702 1735 2.325583 TTTGACTATAAGCCGGCAGG 57.674 50.000 31.54 15.29 41.62 4.85
1741 1774 2.191128 AGCCAACAAGCCTACTTCTG 57.809 50.000 0.00 0.00 32.29 3.02
1743 1776 6.753107 TTATTAAGCCAACAAGCCTACTTC 57.247 37.500 0.00 0.00 32.29 3.01
1744 1777 7.014808 TGTTTTATTAAGCCAACAAGCCTACTT 59.985 33.333 0.00 0.00 36.19 2.24
1783 1816 2.753452 CAGGACGGCTACTCTTTCTACA 59.247 50.000 0.00 0.00 0.00 2.74
1784 1817 2.099427 CCAGGACGGCTACTCTTTCTAC 59.901 54.545 0.00 0.00 0.00 2.59
1880 1913 7.336931 TCTCTTACTTTTTATTAAGGCAGCTGG 59.663 37.037 17.12 0.00 0.00 4.85
1941 1974 9.450807 CCTCACTTTTTACTTATTTGACACAAG 57.549 33.333 0.00 0.00 0.00 3.16
1966 1999 1.073768 GAAAGAGAGAGTGCGCGACC 61.074 60.000 12.10 0.00 0.00 4.79
1970 2003 1.472480 AGAGAGAAAGAGAGAGTGCGC 59.528 52.381 0.00 0.00 0.00 6.09
1971 2004 2.746904 TGAGAGAGAAAGAGAGAGTGCG 59.253 50.000 0.00 0.00 0.00 5.34
1981 2014 4.848357 AGGAGAGAGAGTGAGAGAGAAAG 58.152 47.826 0.00 0.00 0.00 2.62
1982 2015 4.927267 AGGAGAGAGAGTGAGAGAGAAA 57.073 45.455 0.00 0.00 0.00 2.52
1983 2016 5.030147 ACTAGGAGAGAGAGTGAGAGAGAA 58.970 45.833 0.00 0.00 0.00 2.87
2002 2041 4.334759 CCATCTCCACTGCATTTCAACTAG 59.665 45.833 0.00 0.00 0.00 2.57
2020 2059 7.227049 ACCAAATTTTGTAATTCGTCCATCT 57.773 32.000 8.26 0.00 32.85 2.90
2041 2080 6.647334 TCAATCTGTTTTTATCAGCAACCA 57.353 33.333 0.00 0.00 33.48 3.67
2104 2144 9.768662 ATTCAAAAATTCAAAGTGCTTGACTAT 57.231 25.926 0.00 0.00 43.90 2.12
2146 2186 6.515272 AATTCAAGGTATGTTCGAGCAATT 57.485 33.333 5.91 0.00 0.00 2.32
2204 2244 3.400255 AGTCTTTCTAACTGAAACCGGC 58.600 45.455 0.00 0.00 39.50 6.13
2207 2247 6.231211 TGGATGAGTCTTTCTAACTGAAACC 58.769 40.000 0.00 0.00 39.50 3.27
2225 2265 0.250124 GTGACACACGGGTTGGATGA 60.250 55.000 0.00 0.00 0.00 2.92
2245 2285 6.058183 GTGAGCACTAAATCCTTGGTATCAT 58.942 40.000 0.00 0.00 29.52 2.45
2269 2309 5.491982 AGCACTATGTTAAGTTGAAGAGGG 58.508 41.667 0.00 0.00 0.00 4.30
2373 2415 5.182487 TGCTCAACATTTGTGTCGGTATAT 58.818 37.500 0.00 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.