Multiple sequence alignment - TraesCS7D01G521100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G521100 chr7D 100.000 2273 0 0 1 2273 618379354 618377082 0.000000e+00 4198
1 TraesCS7D01G521100 chr7D 92.021 376 21 7 1905 2273 365393693 365394066 9.310000e-144 520
2 TraesCS7D01G521100 chr7D 85.750 400 25 9 1905 2273 614348334 614347936 5.880000e-106 394
3 TraesCS7D01G521100 chr7D 85.106 329 37 2 1007 1335 618714965 618715281 2.180000e-85 326
4 TraesCS7D01G521100 chr7B 84.580 1751 142 52 103 1814 712837837 712836176 0.000000e+00 1620
5 TraesCS7D01G521100 chr7B 87.654 243 30 0 1007 1249 713216709 713216951 1.330000e-72 283
6 TraesCS7D01G521100 chr7A 80.108 1478 157 60 484 1902 712093762 712092363 0.000000e+00 974
7 TraesCS7D01G521100 chr7A 84.222 450 44 15 1 447 712094182 712093757 1.620000e-111 412
8 TraesCS7D01G521100 chr7A 87.037 378 26 6 1905 2273 33091948 33092311 2.720000e-109 405
9 TraesCS7D01G521100 chr7A 84.235 425 54 6 788 1203 712085897 712085477 3.520000e-108 401
10 TraesCS7D01G521100 chr7A 83.891 329 41 2 1007 1335 712360924 712361240 1.020000e-78 303
11 TraesCS7D01G521100 chr3A 91.489 376 24 5 1905 2273 698164787 698164413 5.600000e-141 510
12 TraesCS7D01G521100 chr6D 89.390 377 24 8 1907 2273 260068237 260067867 5.720000e-126 460
13 TraesCS7D01G521100 chr6D 85.323 402 25 12 1905 2273 208990176 208989776 3.540000e-103 385
14 TraesCS7D01G521100 chr2D 87.563 394 19 9 1905 2270 542194362 542194753 1.610000e-116 429
15 TraesCS7D01G521100 chr2D 81.407 398 30 10 1903 2270 298432394 298432777 3.700000e-73 285
16 TraesCS7D01G521100 chr2D 81.117 376 46 15 1905 2273 633086430 633086073 6.180000e-71 278
17 TraesCS7D01G521100 chrUn 87.037 378 26 6 1905 2273 82019974 82019611 2.720000e-109 405
18 TraesCS7D01G521100 chr6A 86.243 378 42 6 1905 2273 586670939 586671315 3.520000e-108 401
19 TraesCS7D01G521100 chr4A 85.000 380 36 12 1905 2273 436440966 436440597 1.280000e-97 366
20 TraesCS7D01G521100 chr2A 80.000 415 33 25 1905 2273 143277151 143277561 6.230000e-66 261
21 TraesCS7D01G521100 chr3D 78.502 414 37 21 1905 2273 581988194 581987788 8.170000e-55 224
22 TraesCS7D01G521100 chr5B 90.476 126 9 3 1905 2027 583283475 583283600 1.810000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G521100 chr7D 618377082 618379354 2272 True 4198 4198 100.000 1 2273 1 chr7D.!!$R2 2272
1 TraesCS7D01G521100 chr7B 712836176 712837837 1661 True 1620 1620 84.580 103 1814 1 chr7B.!!$R1 1711
2 TraesCS7D01G521100 chr7A 712092363 712094182 1819 True 693 974 82.165 1 1902 2 chr7A.!!$R2 1901

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 820 0.034337 TATAAGGCGGGGCGATTGAC 59.966 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2145 0.58296 ACGAATTCGCCGAACGTTTT 59.417 45.0 27.03 0.92 44.43 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 81 4.218417 CCCAATGTTTTAGGAGTCCACAAG 59.782 45.833 12.86 4.38 0.00 3.16
105 108 1.302832 CAGGCCCACTTCGCTTTCT 60.303 57.895 0.00 0.00 0.00 2.52
144 147 2.932194 AGGCTGGCTGCTTCTCCA 60.932 61.111 16.14 0.00 42.39 3.86
148 151 2.851798 CTGGCTGCTTCTCCAGTTC 58.148 57.895 0.00 0.00 43.66 3.01
149 152 0.324285 CTGGCTGCTTCTCCAGTTCT 59.676 55.000 0.00 0.00 43.66 3.01
150 153 0.322975 TGGCTGCTTCTCCAGTTCTC 59.677 55.000 0.00 0.00 35.28 2.87
151 154 0.392327 GGCTGCTTCTCCAGTTCTCC 60.392 60.000 0.00 0.00 35.28 3.71
152 155 0.322975 GCTGCTTCTCCAGTTCTCCA 59.677 55.000 0.00 0.00 35.28 3.86
153 156 1.943507 GCTGCTTCTCCAGTTCTCCAC 60.944 57.143 0.00 0.00 35.28 4.02
169 172 1.566298 CCACCCTCTCCCCTTCCTTG 61.566 65.000 0.00 0.00 0.00 3.61
176 179 1.127343 CTCCCCTTCCTTGCCTCTAG 58.873 60.000 0.00 0.00 0.00 2.43
194 197 0.535797 AGAGCGGTGCTAACCTAACC 59.464 55.000 0.00 0.00 45.17 2.85
307 316 2.159085 CGGATAAGGTCTCACTCAACCC 60.159 54.545 0.00 0.00 36.11 4.11
311 320 0.191064 AGGTCTCACTCAACCCCTCA 59.809 55.000 0.00 0.00 36.11 3.86
376 390 2.358300 ATCCGTAGGGTCTGTCTGATGT 60.358 50.000 0.53 0.00 28.78 3.06
404 421 3.754323 GTGTCCGTTGGATCCATGTAAAA 59.246 43.478 17.06 0.00 32.73 1.52
405 422 3.754323 TGTCCGTTGGATCCATGTAAAAC 59.246 43.478 17.06 8.66 32.73 2.43
540 564 2.969821 AAGGATTTGGGTGCAGTGTA 57.030 45.000 0.00 0.00 0.00 2.90
546 570 0.953471 TTGGGTGCAGTGTATCGTGC 60.953 55.000 0.00 0.00 40.29 5.34
555 579 1.987306 TGTATCGTGCTGGGAGCCA 60.987 57.895 0.00 0.00 41.51 4.75
647 671 6.222038 ACAGCCTGAATTCGTCTTAGATTA 57.778 37.500 0.00 0.00 0.00 1.75
648 672 6.043411 ACAGCCTGAATTCGTCTTAGATTAC 58.957 40.000 0.00 0.00 0.00 1.89
649 673 5.174035 CAGCCTGAATTCGTCTTAGATTACG 59.826 44.000 0.04 0.00 40.40 3.18
654 678 4.548991 ATTCGTCTTAGATTACGTCGCT 57.451 40.909 0.00 0.00 39.99 4.93
661 686 1.641577 AGATTACGTCGCTGAAAGGC 58.358 50.000 0.00 0.00 0.00 4.35
710 735 4.499183 CGATTAGTTTCAGAACTGCCTCT 58.501 43.478 2.25 0.00 45.46 3.69
716 741 2.105006 TCAGAACTGCCTCTGATTGC 57.895 50.000 6.24 0.00 45.45 3.56
767 792 3.238108 AGTCTGAATCGTGCTTAGGTG 57.762 47.619 0.00 0.00 0.00 4.00
772 797 0.107654 AATCGTGCTTAGGTGGCCTC 60.108 55.000 3.32 0.00 34.61 4.70
773 798 1.972660 ATCGTGCTTAGGTGGCCTCC 61.973 60.000 16.45 16.45 34.61 4.30
776 801 2.692741 GCTTAGGTGGCCTCCCCT 60.693 66.667 20.36 16.15 34.61 4.79
777 802 1.384082 GCTTAGGTGGCCTCCCCTA 60.384 63.158 20.36 15.14 34.61 3.53
778 803 0.768609 GCTTAGGTGGCCTCCCCTAT 60.769 60.000 20.36 4.37 34.61 2.57
779 804 1.484446 GCTTAGGTGGCCTCCCCTATA 60.484 57.143 20.36 3.33 34.61 1.31
780 805 2.986050 CTTAGGTGGCCTCCCCTATAA 58.014 52.381 20.36 11.01 34.61 0.98
781 806 2.715763 TAGGTGGCCTCCCCTATAAG 57.284 55.000 20.36 0.00 34.61 1.73
782 807 0.104409 AGGTGGCCTCCCCTATAAGG 60.104 60.000 20.36 0.00 35.65 2.69
786 811 3.807368 CCTCCCCTATAAGGCGGG 58.193 66.667 0.00 0.00 40.29 6.13
790 815 2.920912 CCCTATAAGGCGGGGCGA 60.921 66.667 0.00 0.00 36.78 5.54
791 816 2.291043 CCCTATAAGGCGGGGCGAT 61.291 63.158 0.00 0.00 36.78 4.58
792 817 1.677552 CCTATAAGGCGGGGCGATT 59.322 57.895 0.00 0.00 0.00 3.34
793 818 0.673644 CCTATAAGGCGGGGCGATTG 60.674 60.000 0.00 0.00 0.00 2.67
794 819 0.320374 CTATAAGGCGGGGCGATTGA 59.680 55.000 0.00 0.00 0.00 2.57
795 820 0.034337 TATAAGGCGGGGCGATTGAC 59.966 55.000 0.00 0.00 0.00 3.18
796 821 2.676163 ATAAGGCGGGGCGATTGACC 62.676 60.000 0.00 0.00 45.75 4.02
798 823 4.796495 GGCGGGGCGATTGACCTT 62.796 66.667 4.33 0.00 45.75 3.50
799 824 2.188469 GCGGGGCGATTGACCTTA 59.812 61.111 4.33 0.00 45.75 2.69
800 825 1.227853 GCGGGGCGATTGACCTTAT 60.228 57.895 4.33 0.00 45.75 1.73
801 826 1.507141 GCGGGGCGATTGACCTTATG 61.507 60.000 4.33 0.00 45.75 1.90
802 827 1.507141 CGGGGCGATTGACCTTATGC 61.507 60.000 4.33 0.00 45.75 3.14
803 828 1.172812 GGGGCGATTGACCTTATGCC 61.173 60.000 4.33 0.00 45.75 4.40
807 832 1.949525 GCGATTGACCTTATGCCACAT 59.050 47.619 0.00 0.00 0.00 3.21
808 833 3.138304 GCGATTGACCTTATGCCACATA 58.862 45.455 0.00 0.00 0.00 2.29
827 852 6.375455 CCACATAGCTGGTTAGTTTTCAGAAT 59.625 38.462 0.00 0.00 0.00 2.40
829 854 8.299570 CACATAGCTGGTTAGTTTTCAGAATTT 58.700 33.333 0.00 0.00 0.00 1.82
877 904 3.698029 TTGCACTGCTGAAGAGTTTTC 57.302 42.857 1.98 0.00 0.00 2.29
882 909 4.380531 CACTGCTGAAGAGTTTTCCTACA 58.619 43.478 0.00 0.00 0.00 2.74
883 910 4.816385 CACTGCTGAAGAGTTTTCCTACAA 59.184 41.667 0.00 0.00 0.00 2.41
884 911 5.296780 CACTGCTGAAGAGTTTTCCTACAAA 59.703 40.000 0.00 0.00 0.00 2.83
885 912 6.016777 CACTGCTGAAGAGTTTTCCTACAAAT 60.017 38.462 0.00 0.00 0.00 2.32
906 933 8.622157 ACAAATGATTCATTTTGTTGAATTGCA 58.378 25.926 19.55 0.00 44.35 4.08
909 936 7.731882 TGATTCATTTTGTTGAATTGCATGT 57.268 28.000 0.00 0.00 44.35 3.21
916 943 9.499585 CATTTTGTTGAATTGCATGTTACAAAA 57.500 25.926 19.96 19.96 42.72 2.44
991 1018 1.021390 GTTCAGCTGTGGACGATGGG 61.021 60.000 14.67 0.00 0.00 4.00
1005 1032 1.271001 CGATGGGCCAGATGAATGCTA 60.271 52.381 13.78 0.00 0.00 3.49
1009 1044 2.104792 TGGGCCAGATGAATGCTACTAC 59.895 50.000 0.00 0.00 0.00 2.73
1017 1052 3.520290 TGAATGCTACTACAACCGAGG 57.480 47.619 0.00 0.00 0.00 4.63
1038 1073 1.460699 GAAGGCCACCCTGGTTCTT 59.539 57.895 5.01 0.00 41.90 2.52
1047 1082 1.566298 CCCTGGTTCTTGGAGGGGAG 61.566 65.000 0.00 0.00 42.65 4.30
1054 1089 1.215647 CTTGGAGGGGAGTCGTTCG 59.784 63.158 0.00 0.00 0.00 3.95
1070 1105 0.676184 TTCGCAGTCAGCTCTGAGTT 59.324 50.000 6.61 0.00 41.02 3.01
1075 1110 2.673610 GCAGTCAGCTCTGAGTTAGGTG 60.674 54.545 6.61 0.00 41.02 4.00
1187 1223 1.805869 GATGAATCCATCGAGGGCTG 58.194 55.000 12.24 0.00 39.70 4.85
1208 1244 2.427245 CCGATGAGGAGGGCGAAGT 61.427 63.158 0.00 0.00 45.00 3.01
1216 1252 1.968540 GAGGGCGAAGTGCTTGCTT 60.969 57.895 0.00 0.00 45.43 3.91
1222 1258 2.542824 GGCGAAGTGCTTGCTTAAAACA 60.543 45.455 0.00 0.00 45.43 2.83
1225 1261 2.774439 AGTGCTTGCTTAAAACACGG 57.226 45.000 0.00 0.00 36.38 4.94
1247 1283 5.639506 CGGTGAAGAAATCTAAGAAGCAGAA 59.360 40.000 0.00 0.00 0.00 3.02
1248 1284 6.183360 CGGTGAAGAAATCTAAGAAGCAGAAG 60.183 42.308 0.00 0.00 0.00 2.85
1249 1285 6.876257 GGTGAAGAAATCTAAGAAGCAGAAGA 59.124 38.462 0.00 0.00 0.00 2.87
1250 1286 7.389053 GGTGAAGAAATCTAAGAAGCAGAAGAA 59.611 37.037 0.00 0.00 0.00 2.52
1251 1287 8.442384 GTGAAGAAATCTAAGAAGCAGAAGAAG 58.558 37.037 0.00 0.00 0.00 2.85
1252 1288 8.370940 TGAAGAAATCTAAGAAGCAGAAGAAGA 58.629 33.333 0.00 0.00 0.00 2.87
1253 1289 9.213799 GAAGAAATCTAAGAAGCAGAAGAAGAA 57.786 33.333 0.00 0.00 0.00 2.52
1254 1290 8.776376 AGAAATCTAAGAAGCAGAAGAAGAAG 57.224 34.615 0.00 0.00 0.00 2.85
1255 1291 6.983474 AATCTAAGAAGCAGAAGAAGAAGC 57.017 37.500 0.00 0.00 0.00 3.86
1256 1292 5.474578 TCTAAGAAGCAGAAGAAGAAGCA 57.525 39.130 0.00 0.00 0.00 3.91
1257 1293 5.477510 TCTAAGAAGCAGAAGAAGAAGCAG 58.522 41.667 0.00 0.00 0.00 4.24
1261 1297 2.425539 AGCAGAAGAAGAAGCAGAAGC 58.574 47.619 0.00 0.00 42.56 3.86
1281 1317 3.823873 AGCGATCGTCCTAAATCTCATCT 59.176 43.478 17.81 0.00 0.00 2.90
1282 1318 4.083003 AGCGATCGTCCTAAATCTCATCTC 60.083 45.833 17.81 0.00 0.00 2.75
1308 1344 2.526432 TCGTGCTCTTTCTTAGTCCCT 58.474 47.619 0.00 0.00 0.00 4.20
1335 1371 4.925054 TGCAAAGAATAGAAAACATGCTGC 59.075 37.500 0.00 0.00 33.87 5.25
1338 1374 4.978083 AGAATAGAAAACATGCTGCTGG 57.022 40.909 0.00 0.00 0.00 4.85
1339 1375 4.592942 AGAATAGAAAACATGCTGCTGGA 58.407 39.130 0.00 0.00 0.00 3.86
1341 1377 1.985473 AGAAAACATGCTGCTGGACA 58.015 45.000 0.00 0.00 0.00 4.02
1342 1378 1.610522 AGAAAACATGCTGCTGGACAC 59.389 47.619 0.00 0.00 0.00 3.67
1343 1379 1.337703 GAAAACATGCTGCTGGACACA 59.662 47.619 0.00 0.00 0.00 3.72
1344 1380 1.401761 AAACATGCTGCTGGACACAA 58.598 45.000 0.00 0.00 0.00 3.33
1345 1381 0.956633 AACATGCTGCTGGACACAAG 59.043 50.000 0.00 0.00 0.00 3.16
1356 1411 4.644234 TGCTGGACACAAGAAAAGATCAAA 59.356 37.500 0.00 0.00 0.00 2.69
1359 1414 6.145048 GCTGGACACAAGAAAAGATCAAATTG 59.855 38.462 0.00 0.00 0.00 2.32
1395 1450 5.232463 AGCTGCTTGTTTATGGAATTGTTG 58.768 37.500 0.00 0.00 0.00 3.33
1400 1455 6.183360 TGCTTGTTTATGGAATTGTTGTCTGT 60.183 34.615 0.00 0.00 0.00 3.41
1418 1473 3.388024 TCTGTAGATATGTGCAGGGGAAC 59.612 47.826 16.22 0.00 0.00 3.62
1422 1477 0.908910 ATATGTGCAGGGGAACGTCA 59.091 50.000 0.00 0.00 0.00 4.35
1430 1485 2.021457 CAGGGGAACGTCACACTTTTT 58.979 47.619 0.00 0.00 0.00 1.94
1474 1529 6.271488 TGTTTTGCTTTGGAGGAGAATATG 57.729 37.500 0.00 0.00 0.00 1.78
1554 1609 8.334632 CCAACAACTTAATTGAAATCCAACAAC 58.665 33.333 0.00 0.00 41.23 3.32
1555 1610 8.334632 CAACAACTTAATTGAAATCCAACAACC 58.665 33.333 0.00 0.00 41.23 3.77
1556 1611 7.560368 ACAACTTAATTGAAATCCAACAACCA 58.440 30.769 0.00 0.00 41.23 3.67
1557 1612 7.710475 ACAACTTAATTGAAATCCAACAACCAG 59.290 33.333 0.00 0.00 41.23 4.00
1558 1613 6.223120 ACTTAATTGAAATCCAACAACCAGC 58.777 36.000 0.00 0.00 37.63 4.85
1559 1614 4.686191 AATTGAAATCCAACAACCAGCA 57.314 36.364 0.00 0.00 37.63 4.41
1560 1615 3.731652 TTGAAATCCAACAACCAGCAG 57.268 42.857 0.00 0.00 0.00 4.24
1561 1616 1.962807 TGAAATCCAACAACCAGCAGG 59.037 47.619 0.00 0.00 42.21 4.85
1562 1617 5.483892 ATTGAAATCCAACAACCAGCAGGT 61.484 41.667 0.00 0.00 43.83 4.00
1563 1618 7.246698 ATTGAAATCCAACAACCAGCAGGTC 62.247 44.000 0.00 0.00 42.14 3.85
1572 1627 2.215191 CCAGCAGGTCCTGATAGCA 58.785 57.895 23.77 0.00 34.77 3.49
1573 1628 0.106335 CCAGCAGGTCCTGATAGCAG 59.894 60.000 23.77 0.00 41.93 4.24
1574 1629 0.829333 CAGCAGGTCCTGATAGCAGT 59.171 55.000 23.77 0.00 40.63 4.40
1575 1630 1.118838 AGCAGGTCCTGATAGCAGTC 58.881 55.000 23.77 1.83 40.63 3.51
1576 1631 0.826715 GCAGGTCCTGATAGCAGTCA 59.173 55.000 23.77 0.00 40.63 3.41
1577 1632 1.208052 GCAGGTCCTGATAGCAGTCAA 59.792 52.381 23.77 0.00 40.63 3.18
1578 1633 2.355108 GCAGGTCCTGATAGCAGTCAAA 60.355 50.000 23.77 0.00 40.63 2.69
1579 1634 3.683847 GCAGGTCCTGATAGCAGTCAAAT 60.684 47.826 23.77 0.00 40.63 2.32
1580 1635 4.521146 CAGGTCCTGATAGCAGTCAAATT 58.479 43.478 14.26 0.00 40.63 1.82
1581 1636 4.946157 CAGGTCCTGATAGCAGTCAAATTT 59.054 41.667 14.26 0.00 40.63 1.82
1582 1637 5.416952 CAGGTCCTGATAGCAGTCAAATTTT 59.583 40.000 14.26 0.00 40.63 1.82
1645 1728 0.662619 CACACGCATCAAACTGTGGT 59.337 50.000 0.00 0.00 36.67 4.16
1793 1894 4.457603 CAGCATAGTACCGATCTCTAGCTT 59.542 45.833 0.00 0.00 0.00 3.74
1795 1896 5.644636 AGCATAGTACCGATCTCTAGCTTAC 59.355 44.000 0.00 0.00 0.00 2.34
1796 1897 5.411977 GCATAGTACCGATCTCTAGCTTACA 59.588 44.000 0.00 0.00 0.00 2.41
1797 1898 6.094325 GCATAGTACCGATCTCTAGCTTACAT 59.906 42.308 0.00 0.00 0.00 2.29
1798 1899 5.950758 AGTACCGATCTCTAGCTTACATG 57.049 43.478 0.00 0.00 0.00 3.21
1799 1900 5.378332 AGTACCGATCTCTAGCTTACATGT 58.622 41.667 2.69 2.69 0.00 3.21
1801 1902 4.938080 ACCGATCTCTAGCTTACATGTTG 58.062 43.478 2.30 0.00 0.00 3.33
1805 1908 6.535150 CCGATCTCTAGCTTACATGTTGAAAA 59.465 38.462 2.30 0.00 0.00 2.29
1814 1917 1.608590 ACATGTTGAAAAGCCTGACGG 59.391 47.619 0.00 0.00 0.00 4.79
1825 1928 3.357079 CTGACGGCCTGTTGTGCC 61.357 66.667 0.00 0.00 45.70 5.01
1831 1934 2.652530 GCCTGTTGTGCCATGTGG 59.347 61.111 0.00 0.00 38.53 4.17
1833 1936 0.893270 GCCTGTTGTGCCATGTGGTA 60.893 55.000 0.35 0.00 37.57 3.25
1842 1945 3.638627 TGTGCCATGTGGTATTGTTCAAA 59.361 39.130 0.35 0.00 37.57 2.69
1855 1958 8.511321 TGGTATTGTTCAAATGTCTATGTCAAC 58.489 33.333 0.00 0.00 0.00 3.18
1856 1959 7.968405 GGTATTGTTCAAATGTCTATGTCAACC 59.032 37.037 0.00 0.00 0.00 3.77
1857 1960 7.765695 ATTGTTCAAATGTCTATGTCAACCT 57.234 32.000 0.00 0.00 0.00 3.50
1889 1992 9.220767 GTTAATCTGTAACAATCTTCCTGTTCT 57.779 33.333 0.00 0.00 38.05 3.01
1902 2005 0.389391 CTGTTCTGGTGACGGTGAGT 59.611 55.000 0.00 0.00 38.16 3.41
1903 2006 0.104120 TGTTCTGGTGACGGTGAGTG 59.896 55.000 0.00 0.00 38.16 3.51
1904 2007 0.387929 GTTCTGGTGACGGTGAGTGA 59.612 55.000 0.00 0.00 38.16 3.41
1905 2008 0.673985 TTCTGGTGACGGTGAGTGAG 59.326 55.000 0.00 0.00 38.16 3.51
1906 2009 0.179001 TCTGGTGACGGTGAGTGAGA 60.179 55.000 0.00 0.00 38.16 3.27
1907 2010 0.242286 CTGGTGACGGTGAGTGAGAG 59.758 60.000 0.00 0.00 0.00 3.20
1908 2011 1.080434 GGTGACGGTGAGTGAGAGC 60.080 63.158 0.00 0.00 0.00 4.09
1909 2012 1.660355 GTGACGGTGAGTGAGAGCA 59.340 57.895 0.00 0.00 0.00 4.26
1910 2013 0.244994 GTGACGGTGAGTGAGAGCAT 59.755 55.000 0.00 0.00 0.00 3.79
1911 2014 0.528017 TGACGGTGAGTGAGAGCATC 59.472 55.000 0.00 0.00 0.00 3.91
1922 2025 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
1923 2026 2.437359 AGCATCTCCAGCCGTTGC 60.437 61.111 0.00 0.00 37.95 4.17
1924 2027 3.512516 GCATCTCCAGCCGTTGCC 61.513 66.667 0.00 0.00 38.69 4.52
1925 2028 2.825836 CATCTCCAGCCGTTGCCC 60.826 66.667 0.00 0.00 38.69 5.36
1926 2029 4.115199 ATCTCCAGCCGTTGCCCC 62.115 66.667 0.00 0.00 38.69 5.80
1944 2047 4.516258 CCCGGGGGCGCCTAAAAT 62.516 66.667 28.56 0.00 0.00 1.82
1945 2048 2.905373 CCGGGGGCGCCTAAAATC 60.905 66.667 28.56 8.16 0.00 2.17
1946 2049 3.276846 CGGGGGCGCCTAAAATCG 61.277 66.667 28.56 16.42 0.00 3.34
1951 2054 4.607606 GCGCCTAAAATCGCCGCC 62.608 66.667 0.00 0.00 45.01 6.13
1952 2055 2.895372 CGCCTAAAATCGCCGCCT 60.895 61.111 0.00 0.00 0.00 5.52
1953 2056 2.715624 GCCTAAAATCGCCGCCTG 59.284 61.111 0.00 0.00 0.00 4.85
1954 2057 2.834618 GCCTAAAATCGCCGCCTGG 61.835 63.158 0.00 0.00 38.77 4.45
1955 2058 1.153249 CCTAAAATCGCCGCCTGGA 60.153 57.895 0.00 0.00 37.49 3.86
1956 2059 1.160329 CCTAAAATCGCCGCCTGGAG 61.160 60.000 0.00 0.00 37.49 3.86
1957 2060 1.153249 TAAAATCGCCGCCTGGAGG 60.153 57.895 12.67 12.67 37.49 4.30
1996 2099 4.410400 CCTGGGGCGAGTTGGTCC 62.410 72.222 0.00 0.00 0.00 4.46
2000 2103 2.901042 GGGCGAGTTGGTCCCTAG 59.099 66.667 0.00 0.00 37.08 3.02
2001 2104 1.988406 GGGCGAGTTGGTCCCTAGT 60.988 63.158 0.00 0.00 37.08 2.57
2002 2105 1.516423 GGCGAGTTGGTCCCTAGTC 59.484 63.158 0.00 0.00 0.00 2.59
2003 2106 1.139095 GCGAGTTGGTCCCTAGTCG 59.861 63.158 17.11 17.11 43.61 4.18
2004 2107 1.139095 CGAGTTGGTCCCTAGTCGC 59.861 63.158 11.09 0.00 37.66 5.19
2005 2108 1.516423 GAGTTGGTCCCTAGTCGCC 59.484 63.158 0.00 0.00 0.00 5.54
2006 2109 2.183555 GTTGGTCCCTAGTCGCCG 59.816 66.667 0.00 0.00 0.00 6.46
2007 2110 3.072468 TTGGTCCCTAGTCGCCGG 61.072 66.667 0.00 0.00 0.00 6.13
2027 2130 3.801997 CCAGGGCCGCTCCAAGAT 61.802 66.667 0.00 0.00 36.21 2.40
2028 2131 2.515523 CAGGGCCGCTCCAAGATG 60.516 66.667 0.00 0.00 36.21 2.90
2029 2132 4.496336 AGGGCCGCTCCAAGATGC 62.496 66.667 0.00 0.00 36.21 3.91
2034 2137 4.032356 CGCTCCAAGATGCGCATA 57.968 55.556 25.40 6.20 45.50 3.14
2035 2138 2.310309 CGCTCCAAGATGCGCATAA 58.690 52.632 25.40 5.82 45.50 1.90
2036 2139 0.870393 CGCTCCAAGATGCGCATAAT 59.130 50.000 25.40 12.67 45.50 1.28
2037 2140 2.068519 CGCTCCAAGATGCGCATAATA 58.931 47.619 25.40 6.54 45.50 0.98
2038 2141 2.480037 CGCTCCAAGATGCGCATAATAA 59.520 45.455 25.40 7.31 45.50 1.40
2039 2142 3.058983 CGCTCCAAGATGCGCATAATAAA 60.059 43.478 25.40 8.44 45.50 1.40
2040 2143 4.554526 CGCTCCAAGATGCGCATAATAAAA 60.555 41.667 25.40 6.77 45.50 1.52
2041 2144 5.280945 GCTCCAAGATGCGCATAATAAAAA 58.719 37.500 25.40 5.08 0.00 1.94
2060 2163 1.665766 AAAAACGTTCGGCGAATTCG 58.334 45.000 26.42 25.49 44.77 3.34
2061 2164 0.582960 AAAACGTTCGGCGAATTCGT 59.417 45.000 25.95 25.95 44.77 3.85
2062 2165 0.582960 AAACGTTCGGCGAATTCGTT 59.417 45.000 31.82 31.82 44.51 3.85
2063 2166 0.582960 AACGTTCGGCGAATTCGTTT 59.417 45.000 31.82 21.32 44.77 3.60
2064 2167 1.417372 ACGTTCGGCGAATTCGTTTA 58.583 45.000 25.95 11.26 44.77 2.01
2065 2168 1.791785 ACGTTCGGCGAATTCGTTTAA 59.208 42.857 25.95 16.07 44.77 1.52
2066 2169 2.220593 ACGTTCGGCGAATTCGTTTAAA 59.779 40.909 25.95 14.47 44.77 1.52
2067 2170 2.580816 CGTTCGGCGAATTCGTTTAAAC 59.419 45.455 26.42 22.11 44.77 2.01
2068 2171 3.543670 GTTCGGCGAATTCGTTTAAACA 58.456 40.909 26.42 4.66 42.22 2.83
2069 2172 4.153256 GTTCGGCGAATTCGTTTAAACAT 58.847 39.130 26.42 2.44 42.22 2.71
2070 2173 3.738399 TCGGCGAATTCGTTTAAACATG 58.262 40.909 27.24 7.64 42.22 3.21
2071 2174 2.843643 CGGCGAATTCGTTTAAACATGG 59.156 45.455 27.24 2.53 42.22 3.66
2072 2175 2.596862 GGCGAATTCGTTTAAACATGGC 59.403 45.455 27.24 12.28 42.22 4.40
2073 2176 3.498082 GCGAATTCGTTTAAACATGGCT 58.502 40.909 27.24 0.00 42.22 4.75
2074 2177 4.437659 GGCGAATTCGTTTAAACATGGCTA 60.438 41.667 27.24 0.00 42.22 3.93
2075 2178 5.090083 GCGAATTCGTTTAAACATGGCTAA 58.910 37.500 27.24 3.15 42.22 3.09
2076 2179 5.569823 GCGAATTCGTTTAAACATGGCTAAA 59.430 36.000 27.24 0.00 42.22 1.85
2077 2180 6.252655 GCGAATTCGTTTAAACATGGCTAAAT 59.747 34.615 27.24 3.62 42.22 1.40
2078 2181 7.201401 GCGAATTCGTTTAAACATGGCTAAATT 60.201 33.333 27.24 10.45 42.22 1.82
2079 2182 8.643752 CGAATTCGTTTAAACATGGCTAAATTT 58.356 29.630 19.67 0.00 34.11 1.82
2080 2183 9.952341 GAATTCGTTTAAACATGGCTAAATTTC 57.048 29.630 18.07 3.29 0.00 2.17
2081 2184 7.555639 TTCGTTTAAACATGGCTAAATTTCG 57.444 32.000 18.07 0.00 0.00 3.46
2082 2185 6.087522 TCGTTTAAACATGGCTAAATTTCGG 58.912 36.000 18.07 0.00 0.00 4.30
2083 2186 5.220135 CGTTTAAACATGGCTAAATTTCGGC 60.220 40.000 18.07 9.08 0.00 5.54
2084 2187 2.959507 AACATGGCTAAATTTCGGCC 57.040 45.000 21.26 21.26 45.45 6.13
2108 2211 8.665643 CCAAATTTGGCATATATTGACATGTT 57.334 30.769 23.81 0.00 44.92 2.71
2109 2212 8.767085 CCAAATTTGGCATATATTGACATGTTC 58.233 33.333 23.81 0.00 44.92 3.18
2110 2213 8.481641 CAAATTTGGCATATATTGACATGTTCG 58.518 33.333 10.49 0.00 44.92 3.95
2111 2214 5.687770 TTGGCATATATTGACATGTTCGG 57.312 39.130 0.00 0.00 44.92 4.30
2112 2215 3.501828 TGGCATATATTGACATGTTCGGC 59.498 43.478 0.00 0.00 38.92 5.54
2113 2216 3.501828 GGCATATATTGACATGTTCGGCA 59.498 43.478 0.00 0.00 31.51 5.69
2114 2217 4.378770 GGCATATATTGACATGTTCGGCAG 60.379 45.833 0.00 0.00 31.51 4.85
2115 2218 4.214119 GCATATATTGACATGTTCGGCAGT 59.786 41.667 0.00 0.00 0.00 4.40
2116 2219 5.408299 GCATATATTGACATGTTCGGCAGTA 59.592 40.000 0.00 0.00 0.00 2.74
2117 2220 6.618592 GCATATATTGACATGTTCGGCAGTAC 60.619 42.308 0.00 0.00 0.00 2.73
2118 2221 2.535012 TTGACATGTTCGGCAGTACA 57.465 45.000 0.00 0.00 32.30 2.90
2119 2222 2.760634 TGACATGTTCGGCAGTACAT 57.239 45.000 0.00 3.36 38.63 2.29
2120 2223 3.878160 TGACATGTTCGGCAGTACATA 57.122 42.857 8.64 0.00 36.44 2.29
2121 2224 3.780902 TGACATGTTCGGCAGTACATAG 58.219 45.455 8.64 6.63 36.44 2.23
2122 2225 2.540101 GACATGTTCGGCAGTACATAGC 59.460 50.000 8.64 1.48 36.44 2.97
2123 2226 2.093711 ACATGTTCGGCAGTACATAGCA 60.094 45.455 8.64 0.00 36.44 3.49
2124 2227 2.753055 TGTTCGGCAGTACATAGCAA 57.247 45.000 0.00 0.00 0.00 3.91
2125 2228 3.046968 TGTTCGGCAGTACATAGCAAA 57.953 42.857 0.00 0.00 0.00 3.68
2126 2229 3.605634 TGTTCGGCAGTACATAGCAAAT 58.394 40.909 0.00 0.00 0.00 2.32
2127 2230 4.760878 TGTTCGGCAGTACATAGCAAATA 58.239 39.130 0.00 0.00 0.00 1.40
2128 2231 4.808895 TGTTCGGCAGTACATAGCAAATAG 59.191 41.667 0.00 0.00 0.00 1.73
2129 2232 4.929819 TCGGCAGTACATAGCAAATAGA 57.070 40.909 0.00 0.00 0.00 1.98
2130 2233 5.270893 TCGGCAGTACATAGCAAATAGAA 57.729 39.130 0.00 0.00 0.00 2.10
2131 2234 5.047847 TCGGCAGTACATAGCAAATAGAAC 58.952 41.667 0.00 0.00 0.00 3.01
2132 2235 5.050490 CGGCAGTACATAGCAAATAGAACT 58.950 41.667 0.00 0.00 0.00 3.01
2133 2236 6.040054 TCGGCAGTACATAGCAAATAGAACTA 59.960 38.462 0.00 0.00 0.00 2.24
2134 2237 6.700081 CGGCAGTACATAGCAAATAGAACTAA 59.300 38.462 0.00 0.00 0.00 2.24
2135 2238 7.223971 CGGCAGTACATAGCAAATAGAACTAAA 59.776 37.037 0.00 0.00 0.00 1.85
2136 2239 8.889717 GGCAGTACATAGCAAATAGAACTAAAA 58.110 33.333 0.00 0.00 0.00 1.52
2137 2240 9.704098 GCAGTACATAGCAAATAGAACTAAAAC 57.296 33.333 0.00 0.00 0.00 2.43
2156 2259 4.838959 AAAAATCGCTGAACGCCG 57.161 50.000 0.00 0.00 43.23 6.46
2157 2260 2.240230 AAAAATCGCTGAACGCCGA 58.760 47.368 0.00 0.00 43.23 5.54
2158 2261 0.165944 AAAAATCGCTGAACGCCGAG 59.834 50.000 0.00 0.00 43.23 4.63
2159 2262 0.949105 AAAATCGCTGAACGCCGAGT 60.949 50.000 0.00 0.00 43.23 4.18
2160 2263 0.108992 AAATCGCTGAACGCCGAGTA 60.109 50.000 0.00 0.00 43.23 2.59
2161 2264 0.525668 AATCGCTGAACGCCGAGTAG 60.526 55.000 0.00 0.00 43.23 2.57
2162 2265 1.654954 ATCGCTGAACGCCGAGTAGT 61.655 55.000 0.00 0.00 43.23 2.73
2163 2266 1.868251 CGCTGAACGCCGAGTAGTC 60.868 63.158 0.00 0.00 34.21 2.59
2164 2267 1.868251 GCTGAACGCCGAGTAGTCG 60.868 63.158 13.16 13.16 46.39 4.18
2165 2268 1.868251 CTGAACGCCGAGTAGTCGC 60.868 63.158 14.65 9.06 45.41 5.19
2166 2269 2.578981 GAACGCCGAGTAGTCGCC 60.579 66.667 14.65 2.21 45.41 5.54
2169 2272 4.883300 CGCCGAGTAGTCGCCGTC 62.883 72.222 14.62 3.09 41.83 4.79
2170 2273 4.883300 GCCGAGTAGTCGCCGTCG 62.883 72.222 14.65 1.76 45.41 5.12
2171 2274 3.494336 CCGAGTAGTCGCCGTCGT 61.494 66.667 14.65 0.00 45.41 4.34
2172 2275 2.021106 CGAGTAGTCGCCGTCGTC 59.979 66.667 7.09 0.00 39.88 4.20
2173 2276 2.021106 GAGTAGTCGCCGTCGTCG 59.979 66.667 0.00 0.00 36.96 5.12
2174 2277 2.734673 GAGTAGTCGCCGTCGTCGT 61.735 63.158 0.71 0.00 36.96 4.34
2175 2278 2.276306 GTAGTCGCCGTCGTCGTC 60.276 66.667 0.71 0.00 36.96 4.20
2176 2279 3.842126 TAGTCGCCGTCGTCGTCG 61.842 66.667 4.87 4.87 39.77 5.12
2184 2287 4.395583 GTCGTCGTCGTCGGCCTT 62.396 66.667 11.74 0.00 38.56 4.35
2185 2288 4.093952 TCGTCGTCGTCGGCCTTC 62.094 66.667 11.74 0.00 38.56 3.46
2186 2289 4.099170 CGTCGTCGTCGGCCTTCT 62.099 66.667 0.00 0.00 38.56 2.85
2187 2290 2.202453 GTCGTCGTCGGCCTTCTC 60.202 66.667 0.00 0.00 35.48 2.87
2188 2291 3.437795 TCGTCGTCGGCCTTCTCC 61.438 66.667 0.00 0.00 37.69 3.71
2189 2292 3.441290 CGTCGTCGGCCTTCTCCT 61.441 66.667 0.00 0.00 0.00 3.69
2190 2293 2.490685 GTCGTCGGCCTTCTCCTC 59.509 66.667 0.00 0.00 0.00 3.71
2191 2294 2.754658 TCGTCGGCCTTCTCCTCC 60.755 66.667 0.00 0.00 0.00 4.30
2192 2295 2.756283 CGTCGGCCTTCTCCTCCT 60.756 66.667 0.00 0.00 0.00 3.69
2193 2296 2.352032 CGTCGGCCTTCTCCTCCTT 61.352 63.158 0.00 0.00 0.00 3.36
2194 2297 1.219393 GTCGGCCTTCTCCTCCTTG 59.781 63.158 0.00 0.00 0.00 3.61
2195 2298 1.078528 TCGGCCTTCTCCTCCTTGA 59.921 57.895 0.00 0.00 0.00 3.02
2196 2299 1.219393 CGGCCTTCTCCTCCTTGAC 59.781 63.158 0.00 0.00 0.00 3.18
2197 2300 1.219393 GGCCTTCTCCTCCTTGACG 59.781 63.158 0.00 0.00 0.00 4.35
2198 2301 1.448717 GCCTTCTCCTCCTTGACGC 60.449 63.158 0.00 0.00 0.00 5.19
2199 2302 1.153745 CCTTCTCCTCCTTGACGCG 60.154 63.158 3.53 3.53 0.00 6.01
2200 2303 1.153745 CTTCTCCTCCTTGACGCGG 60.154 63.158 12.47 0.00 0.00 6.46
2201 2304 3.296709 TTCTCCTCCTTGACGCGGC 62.297 63.158 12.47 8.67 0.00 6.53
2202 2305 4.821589 CTCCTCCTTGACGCGGCC 62.822 72.222 10.82 0.56 0.00 6.13
2221 2324 3.537506 TCCCTGGTGGACCCCTGA 61.538 66.667 7.26 0.00 38.61 3.86
2222 2325 3.330720 CCCTGGTGGACCCCTGAC 61.331 72.222 7.26 0.00 35.39 3.51
2223 2326 3.330720 CCTGGTGGACCCCTGACC 61.331 72.222 7.26 0.44 34.57 4.02
2224 2327 3.706373 CTGGTGGACCCCTGACCG 61.706 72.222 0.00 0.00 34.29 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.614192 GGACTCCTAAAACATTGGGAGAATTTA 59.386 37.037 22.76 0.00 45.79 1.40
50 51 5.015178 TGGACTCCTAAAACATTGGGAGAAT 59.985 40.000 22.76 6.02 45.79 2.40
51 52 4.352595 TGGACTCCTAAAACATTGGGAGAA 59.647 41.667 22.76 8.93 45.79 2.87
52 53 3.913799 TGGACTCCTAAAACATTGGGAGA 59.086 43.478 22.76 3.13 45.79 3.71
54 55 3.396276 TGTGGACTCCTAAAACATTGGGA 59.604 43.478 0.00 0.00 0.00 4.37
55 56 3.761897 TGTGGACTCCTAAAACATTGGG 58.238 45.455 0.00 0.00 0.00 4.12
57 58 5.070001 TCCTTGTGGACTCCTAAAACATTG 58.930 41.667 0.00 0.00 37.46 2.82
58 59 5.319043 TCCTTGTGGACTCCTAAAACATT 57.681 39.130 0.00 0.00 37.46 2.71
60 61 4.993705 ATCCTTGTGGACTCCTAAAACA 57.006 40.909 0.00 0.00 46.51 2.83
61 62 5.070685 ACAATCCTTGTGGACTCCTAAAAC 58.929 41.667 0.00 0.00 46.51 2.43
62 63 5.319043 ACAATCCTTGTGGACTCCTAAAA 57.681 39.130 0.00 0.00 46.51 1.52
78 81 0.251341 AAGTGGGCCTGACACAATCC 60.251 55.000 12.43 0.00 41.21 3.01
83 86 3.050275 GCGAAGTGGGCCTGACAC 61.050 66.667 4.53 1.91 39.10 3.67
144 147 1.081277 GGGGAGAGGGTGGAGAACT 59.919 63.158 0.00 0.00 0.00 3.01
145 148 0.547954 AAGGGGAGAGGGTGGAGAAC 60.548 60.000 0.00 0.00 0.00 3.01
146 149 0.252742 GAAGGGGAGAGGGTGGAGAA 60.253 60.000 0.00 0.00 0.00 2.87
147 150 1.392534 GAAGGGGAGAGGGTGGAGA 59.607 63.158 0.00 0.00 0.00 3.71
148 151 1.690985 GGAAGGGGAGAGGGTGGAG 60.691 68.421 0.00 0.00 0.00 3.86
149 152 1.761780 AAGGAAGGGGAGAGGGTGGA 61.762 60.000 0.00 0.00 0.00 4.02
150 153 1.229984 AAGGAAGGGGAGAGGGTGG 60.230 63.158 0.00 0.00 0.00 4.61
151 154 1.994463 CAAGGAAGGGGAGAGGGTG 59.006 63.158 0.00 0.00 0.00 4.61
152 155 1.925972 GCAAGGAAGGGGAGAGGGT 60.926 63.158 0.00 0.00 0.00 4.34
153 156 2.684499 GGCAAGGAAGGGGAGAGGG 61.684 68.421 0.00 0.00 0.00 4.30
169 172 0.249114 GTTAGCACCGCTCTAGAGGC 60.249 60.000 21.23 15.11 40.44 4.70
307 316 3.643792 CAGGGGGAGTAGAAAGTATGAGG 59.356 52.174 0.00 0.00 0.00 3.86
311 320 5.404395 GGATACAGGGGGAGTAGAAAGTAT 58.596 45.833 0.00 0.00 0.00 2.12
356 366 1.005569 ACATCAGACAGACCCTACGGA 59.994 52.381 0.00 0.00 0.00 4.69
376 390 2.463589 GATCCAACGGACACAGCCCA 62.464 60.000 0.00 0.00 32.98 5.36
404 421 1.407656 TTGCGGTTCTCCAGACCAGT 61.408 55.000 0.00 0.00 0.00 4.00
405 422 0.250295 TTTGCGGTTCTCCAGACCAG 60.250 55.000 0.00 0.00 0.00 4.00
555 579 2.028476 TGATACTGTAACAACTGCGGCT 60.028 45.455 0.00 0.00 0.00 5.52
624 648 4.744795 ATCTAAGACGAATTCAGGCTGT 57.255 40.909 15.27 0.00 0.00 4.40
654 678 3.950794 AAGATCGCCGCGCCTTTCA 62.951 57.895 8.21 0.00 0.00 2.69
661 686 3.624300 CAGCAGAAGATCGCCGCG 61.624 66.667 6.39 6.39 0.00 6.46
679 704 3.374988 TCTGAAACTAATCGGCAATGCAG 59.625 43.478 7.79 2.50 0.00 4.41
684 709 3.188460 GCAGTTCTGAAACTAATCGGCAA 59.812 43.478 3.84 0.00 43.99 4.52
685 710 2.742053 GCAGTTCTGAAACTAATCGGCA 59.258 45.455 3.84 0.00 43.99 5.69
710 735 6.048509 TGAAGCGAAATACTGATAGCAATCA 58.951 36.000 0.00 0.00 39.87 2.57
712 737 6.051717 ACTGAAGCGAAATACTGATAGCAAT 58.948 36.000 0.00 0.00 0.00 3.56
742 767 6.313905 CACCTAAGCACGATTCAGACTAAAAT 59.686 38.462 0.00 0.00 0.00 1.82
746 771 3.130516 CCACCTAAGCACGATTCAGACTA 59.869 47.826 0.00 0.00 0.00 2.59
757 782 2.272471 GGGAGGCCACCTAAGCAC 59.728 66.667 19.48 0.00 31.76 4.40
758 783 2.189558 TAGGGGAGGCCACCTAAGCA 62.190 60.000 19.48 0.00 36.45 3.91
759 784 0.768609 ATAGGGGAGGCCACCTAAGC 60.769 60.000 19.48 1.71 42.27 3.09
776 801 0.034337 GTCAATCGCCCCGCCTTATA 59.966 55.000 0.00 0.00 0.00 0.98
777 802 1.227853 GTCAATCGCCCCGCCTTAT 60.228 57.895 0.00 0.00 0.00 1.73
778 803 2.188469 GTCAATCGCCCCGCCTTA 59.812 61.111 0.00 0.00 0.00 2.69
779 804 4.796495 GGTCAATCGCCCCGCCTT 62.796 66.667 0.00 0.00 0.00 4.35
781 806 2.676163 ATAAGGTCAATCGCCCCGCC 62.676 60.000 0.00 0.00 0.00 6.13
782 807 1.227853 ATAAGGTCAATCGCCCCGC 60.228 57.895 0.00 0.00 0.00 6.13
783 808 1.507141 GCATAAGGTCAATCGCCCCG 61.507 60.000 0.00 0.00 0.00 5.73
784 809 1.172812 GGCATAAGGTCAATCGCCCC 61.173 60.000 0.00 0.00 33.31 5.80
785 810 0.465460 TGGCATAAGGTCAATCGCCC 60.465 55.000 0.00 0.00 38.81 6.13
786 811 0.663153 GTGGCATAAGGTCAATCGCC 59.337 55.000 0.00 0.00 40.02 5.54
787 812 1.378531 TGTGGCATAAGGTCAATCGC 58.621 50.000 0.00 0.00 29.11 4.58
788 813 3.187227 GCTATGTGGCATAAGGTCAATCG 59.813 47.826 0.00 0.00 29.11 3.34
789 814 4.214971 CAGCTATGTGGCATAAGGTCAATC 59.785 45.833 0.00 0.00 29.11 2.67
790 815 4.139786 CAGCTATGTGGCATAAGGTCAAT 58.860 43.478 0.00 0.00 29.11 2.57
791 816 3.544684 CAGCTATGTGGCATAAGGTCAA 58.455 45.455 0.00 0.00 29.11 3.18
792 817 2.158769 CCAGCTATGTGGCATAAGGTCA 60.159 50.000 0.00 0.00 34.17 4.02
793 818 2.158755 ACCAGCTATGTGGCATAAGGTC 60.159 50.000 0.00 0.00 41.90 3.85
794 819 1.846439 ACCAGCTATGTGGCATAAGGT 59.154 47.619 0.00 0.00 41.90 3.50
795 820 2.645838 ACCAGCTATGTGGCATAAGG 57.354 50.000 0.00 0.00 41.90 2.69
796 821 4.708177 ACTAACCAGCTATGTGGCATAAG 58.292 43.478 0.00 0.00 41.90 1.73
797 822 4.771114 ACTAACCAGCTATGTGGCATAA 57.229 40.909 0.00 0.00 41.90 1.90
798 823 4.771114 AACTAACCAGCTATGTGGCATA 57.229 40.909 0.00 0.00 41.90 3.14
799 824 3.652057 AACTAACCAGCTATGTGGCAT 57.348 42.857 0.00 0.00 41.90 4.40
800 825 3.433306 AAACTAACCAGCTATGTGGCA 57.567 42.857 0.00 0.00 41.90 4.92
801 826 3.756434 TGAAAACTAACCAGCTATGTGGC 59.244 43.478 0.00 0.00 41.90 5.01
802 827 5.245531 TCTGAAAACTAACCAGCTATGTGG 58.754 41.667 0.00 0.00 44.01 4.17
803 828 6.801539 TTCTGAAAACTAACCAGCTATGTG 57.198 37.500 0.00 0.00 0.00 3.21
807 832 7.001674 TGGAAATTCTGAAAACTAACCAGCTA 58.998 34.615 0.00 0.00 0.00 3.32
808 833 5.833131 TGGAAATTCTGAAAACTAACCAGCT 59.167 36.000 0.00 0.00 0.00 4.24
827 852 5.034852 TGCTAATGCTATGCTAGTGGAAA 57.965 39.130 0.00 0.00 40.48 3.13
829 854 4.897509 ATGCTAATGCTATGCTAGTGGA 57.102 40.909 0.00 0.00 40.48 4.02
863 890 6.061441 TCATTTGTAGGAAAACTCTTCAGCA 58.939 36.000 0.00 0.00 0.00 4.41
882 909 9.619316 CATGCAATTCAACAAAATGAATCATTT 57.381 25.926 14.86 14.86 46.57 2.32
883 910 8.788806 ACATGCAATTCAACAAAATGAATCATT 58.211 25.926 2.07 2.07 46.57 2.57
884 911 8.330466 ACATGCAATTCAACAAAATGAATCAT 57.670 26.923 0.00 0.00 46.57 2.45
885 912 7.731882 ACATGCAATTCAACAAAATGAATCA 57.268 28.000 0.00 0.00 46.57 2.57
927 954 0.672401 TGACGAAGCCGATGGGAAAC 60.672 55.000 0.00 0.00 39.50 2.78
991 1018 3.561725 GGTTGTAGTAGCATTCATCTGGC 59.438 47.826 0.00 0.00 0.00 4.85
1005 1032 1.590147 CTTCGCCCTCGGTTGTAGT 59.410 57.895 0.00 0.00 36.13 2.73
1038 1073 3.379445 GCGAACGACTCCCCTCCA 61.379 66.667 0.00 0.00 0.00 3.86
1054 1089 1.548269 ACCTAACTCAGAGCTGACTGC 59.452 52.381 0.00 0.00 43.29 4.40
1155 1191 5.133383 TGGATTCATCAGGGACATCATTT 57.867 39.130 0.00 0.00 0.00 2.32
1158 1194 4.362470 GATGGATTCATCAGGGACATCA 57.638 45.455 9.27 0.00 46.74 3.07
1187 1223 1.464376 TTCGCCCTCCTCATCGGATC 61.464 60.000 0.00 0.00 42.12 3.36
1208 1244 2.017782 TCACCGTGTTTTAAGCAAGCA 58.982 42.857 0.00 0.00 0.00 3.91
1216 1252 8.665643 TTCTTAGATTTCTTCACCGTGTTTTA 57.334 30.769 0.00 0.00 0.00 1.52
1222 1258 4.894784 TGCTTCTTAGATTTCTTCACCGT 58.105 39.130 0.00 0.00 0.00 4.83
1225 1261 7.897575 TCTTCTGCTTCTTAGATTTCTTCAC 57.102 36.000 0.00 0.00 0.00 3.18
1247 1283 1.203523 ACGATCGCTTCTGCTTCTTCT 59.796 47.619 16.60 0.00 36.97 2.85
1248 1284 1.586123 GACGATCGCTTCTGCTTCTTC 59.414 52.381 16.60 0.00 36.97 2.87
1249 1285 1.634702 GACGATCGCTTCTGCTTCTT 58.365 50.000 16.60 0.00 36.97 2.52
1250 1286 0.179124 GGACGATCGCTTCTGCTTCT 60.179 55.000 16.60 0.00 36.97 2.85
1251 1287 0.179124 AGGACGATCGCTTCTGCTTC 60.179 55.000 16.60 2.01 36.97 3.86
1252 1288 1.103803 TAGGACGATCGCTTCTGCTT 58.896 50.000 16.60 0.00 36.97 3.91
1253 1289 1.103803 TTAGGACGATCGCTTCTGCT 58.896 50.000 16.60 8.89 36.97 4.24
1254 1290 1.922570 TTTAGGACGATCGCTTCTGC 58.077 50.000 16.60 0.19 0.00 4.26
1255 1291 3.971150 AGATTTAGGACGATCGCTTCTG 58.029 45.455 16.60 0.00 0.00 3.02
1256 1292 3.632604 TGAGATTTAGGACGATCGCTTCT 59.367 43.478 16.60 12.42 0.00 2.85
1257 1293 3.966154 TGAGATTTAGGACGATCGCTTC 58.034 45.455 16.60 6.06 0.00 3.86
1261 1297 5.363979 TGAGATGAGATTTAGGACGATCG 57.636 43.478 14.88 14.88 0.00 3.69
1281 1317 6.757010 GGACTAAGAAAGAGCACGATAAATGA 59.243 38.462 0.00 0.00 0.00 2.57
1282 1318 6.018669 GGGACTAAGAAAGAGCACGATAAATG 60.019 42.308 0.00 0.00 0.00 2.32
1320 1356 3.441572 GTGTCCAGCAGCATGTTTTCTAT 59.558 43.478 0.00 0.00 39.31 1.98
1321 1357 2.813754 GTGTCCAGCAGCATGTTTTCTA 59.186 45.455 0.00 0.00 39.31 2.10
1325 1361 1.338973 CTTGTGTCCAGCAGCATGTTT 59.661 47.619 0.00 0.00 39.31 2.83
1335 1371 7.205297 ACAATTTGATCTTTTCTTGTGTCCAG 58.795 34.615 2.79 0.00 0.00 3.86
1338 1374 8.411318 ACAACAATTTGATCTTTTCTTGTGTC 57.589 30.769 2.79 0.00 36.48 3.67
1339 1375 8.776376 AACAACAATTTGATCTTTTCTTGTGT 57.224 26.923 2.79 0.00 36.48 3.72
1341 1377 9.533253 CCTAACAACAATTTGATCTTTTCTTGT 57.467 29.630 2.79 0.00 36.48 3.16
1342 1378 8.490355 GCCTAACAACAATTTGATCTTTTCTTG 58.510 33.333 2.79 0.00 36.48 3.02
1343 1379 8.203485 TGCCTAACAACAATTTGATCTTTTCTT 58.797 29.630 2.79 0.00 36.48 2.52
1344 1380 7.653311 GTGCCTAACAACAATTTGATCTTTTCT 59.347 33.333 2.79 0.00 36.48 2.52
1345 1381 7.653311 AGTGCCTAACAACAATTTGATCTTTTC 59.347 33.333 2.79 0.00 36.48 2.29
1395 1450 2.965831 TCCCCTGCACATATCTACAGAC 59.034 50.000 0.00 0.00 31.67 3.51
1400 1455 2.364324 GACGTTCCCCTGCACATATCTA 59.636 50.000 0.00 0.00 0.00 1.98
1437 1492 5.051891 AGCAAAACATATGACAGACAAGC 57.948 39.130 10.38 2.63 0.00 4.01
1440 1495 5.534278 TCCAAAGCAAAACATATGACAGACA 59.466 36.000 10.38 0.00 0.00 3.41
1449 1504 7.615365 ACATATTCTCCTCCAAAGCAAAACATA 59.385 33.333 0.00 0.00 0.00 2.29
1474 1529 3.065925 AGAACTTTTGTGCTGAAGCTCAC 59.934 43.478 6.56 0.00 43.16 3.51
1554 1609 0.106335 CTGCTATCAGGACCTGCTGG 59.894 60.000 17.33 10.53 36.68 4.85
1555 1610 0.829333 ACTGCTATCAGGACCTGCTG 59.171 55.000 17.33 11.24 44.54 4.41
1556 1611 1.118838 GACTGCTATCAGGACCTGCT 58.881 55.000 17.33 10.06 44.54 4.24
1557 1612 0.826715 TGACTGCTATCAGGACCTGC 59.173 55.000 17.33 5.56 44.54 4.85
1558 1613 3.616956 TTTGACTGCTATCAGGACCTG 57.383 47.619 15.99 15.99 44.54 4.00
1559 1614 4.851639 AATTTGACTGCTATCAGGACCT 57.148 40.909 0.00 0.00 44.54 3.85
1560 1615 5.649831 AGAAAATTTGACTGCTATCAGGACC 59.350 40.000 0.00 0.00 44.54 4.46
1561 1616 6.150140 ACAGAAAATTTGACTGCTATCAGGAC 59.850 38.462 19.05 0.00 44.54 3.85
1562 1617 6.240894 ACAGAAAATTTGACTGCTATCAGGA 58.759 36.000 19.05 0.00 44.54 3.86
1563 1618 6.506500 ACAGAAAATTTGACTGCTATCAGG 57.493 37.500 19.05 1.12 44.54 3.86
1564 1619 8.077991 TGAAACAGAAAATTTGACTGCTATCAG 58.922 33.333 19.05 0.00 45.71 2.90
1565 1620 7.939782 TGAAACAGAAAATTTGACTGCTATCA 58.060 30.769 19.05 17.19 35.38 2.15
1566 1621 8.857216 CATGAAACAGAAAATTTGACTGCTATC 58.143 33.333 19.05 15.66 35.38 2.08
1567 1622 8.579006 TCATGAAACAGAAAATTTGACTGCTAT 58.421 29.630 19.05 9.98 35.38 2.97
1568 1623 7.939782 TCATGAAACAGAAAATTTGACTGCTA 58.060 30.769 19.05 8.65 35.38 3.49
1569 1624 6.808829 TCATGAAACAGAAAATTTGACTGCT 58.191 32.000 19.05 9.45 35.38 4.24
1570 1625 7.467557 TTCATGAAACAGAAAATTTGACTGC 57.532 32.000 19.05 8.91 35.38 4.40
1571 1626 9.910511 CTTTTCATGAAACAGAAAATTTGACTG 57.089 29.630 20.35 18.10 41.35 3.51
1572 1627 9.657419 ACTTTTCATGAAACAGAAAATTTGACT 57.343 25.926 20.35 0.00 41.35 3.41
1581 1636 9.214957 ACACGATATACTTTTCATGAAACAGAA 57.785 29.630 20.35 5.30 0.00 3.02
1582 1637 8.771920 ACACGATATACTTTTCATGAAACAGA 57.228 30.769 20.35 8.72 0.00 3.41
1617 1700 4.515191 AGTTTGATGCGTGTGTACAGAAAT 59.485 37.500 0.00 0.00 0.00 2.17
1630 1713 3.617540 TTTACACCACAGTTTGATGCG 57.382 42.857 0.00 0.00 0.00 4.73
1793 1894 2.811431 CCGTCAGGCTTTTCAACATGTA 59.189 45.455 0.00 0.00 0.00 2.29
1795 1896 2.336554 CCGTCAGGCTTTTCAACATG 57.663 50.000 0.00 0.00 0.00 3.21
1825 1928 8.461222 ACATAGACATTTGAACAATACCACATG 58.539 33.333 0.00 0.00 0.00 3.21
1831 1934 8.730680 AGGTTGACATAGACATTTGAACAATAC 58.269 33.333 0.00 0.00 0.00 1.89
1833 1936 7.765695 AGGTTGACATAGACATTTGAACAAT 57.234 32.000 0.00 0.00 0.00 2.71
1868 1971 5.071788 ACCAGAACAGGAAGATTGTTACAGA 59.928 40.000 0.00 0.00 38.78 3.41
1870 1973 5.063204 CACCAGAACAGGAAGATTGTTACA 58.937 41.667 0.00 0.00 38.78 2.41
1871 1974 5.179555 GTCACCAGAACAGGAAGATTGTTAC 59.820 44.000 0.00 0.00 38.78 2.50
1889 1992 1.806461 GCTCTCACTCACCGTCACCA 61.806 60.000 0.00 0.00 0.00 4.17
1902 2005 1.260538 AACGGCTGGAGATGCTCTCA 61.261 55.000 13.06 0.00 45.12 3.27
1903 2006 0.809241 CAACGGCTGGAGATGCTCTC 60.809 60.000 0.00 5.01 42.66 3.20
1904 2007 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
1905 2008 2.467826 GCAACGGCTGGAGATGCTC 61.468 63.158 0.00 0.00 36.96 4.26
1906 2009 2.437359 GCAACGGCTGGAGATGCT 60.437 61.111 0.00 0.00 36.96 3.79
1907 2010 3.512516 GGCAACGGCTGGAGATGC 61.513 66.667 0.00 1.80 40.87 3.91
1908 2011 2.825836 GGGCAACGGCTGGAGATG 60.826 66.667 0.00 0.00 40.87 2.90
1909 2012 4.115199 GGGGCAACGGCTGGAGAT 62.115 66.667 0.00 0.00 40.87 2.75
1927 2030 4.516258 ATTTTAGGCGCCCCCGGG 62.516 66.667 26.15 15.80 39.21 5.73
1928 2031 2.905373 GATTTTAGGCGCCCCCGG 60.905 66.667 26.15 0.00 39.21 5.73
1929 2032 3.276846 CGATTTTAGGCGCCCCCG 61.277 66.667 26.15 13.77 39.21 5.73
1930 2033 3.592814 GCGATTTTAGGCGCCCCC 61.593 66.667 26.15 5.00 46.93 5.40
1936 2039 2.715624 CAGGCGGCGATTTTAGGC 59.284 61.111 12.98 0.00 0.00 3.93
1937 2040 1.153249 TCCAGGCGGCGATTTTAGG 60.153 57.895 12.98 2.73 0.00 2.69
1938 2041 1.160329 CCTCCAGGCGGCGATTTTAG 61.160 60.000 12.98 1.08 0.00 1.85
1939 2042 1.153249 CCTCCAGGCGGCGATTTTA 60.153 57.895 12.98 0.00 0.00 1.52
1940 2043 2.438434 CCTCCAGGCGGCGATTTT 60.438 61.111 12.98 0.00 0.00 1.82
1979 2082 4.410400 GGACCAACTCGCCCCAGG 62.410 72.222 0.00 0.00 0.00 4.45
1980 2083 4.410400 GGGACCAACTCGCCCCAG 62.410 72.222 0.00 0.00 38.69 4.45
1981 2084 3.549433 TAGGGACCAACTCGCCCCA 62.549 63.158 0.00 0.00 43.08 4.96
1982 2085 2.686106 TAGGGACCAACTCGCCCC 60.686 66.667 0.00 0.00 43.08 5.80
1983 2086 1.957765 GACTAGGGACCAACTCGCCC 61.958 65.000 0.00 0.00 42.37 6.13
1984 2087 1.516423 GACTAGGGACCAACTCGCC 59.484 63.158 0.00 0.00 31.99 5.54
1985 2088 1.139095 CGACTAGGGACCAACTCGC 59.861 63.158 0.00 0.00 0.00 5.03
1986 2089 1.139095 GCGACTAGGGACCAACTCG 59.861 63.158 0.00 0.00 0.00 4.18
1987 2090 1.516423 GGCGACTAGGGACCAACTC 59.484 63.158 0.00 0.00 0.00 3.01
1988 2091 2.348888 CGGCGACTAGGGACCAACT 61.349 63.158 0.00 0.00 0.00 3.16
1989 2092 2.183555 CGGCGACTAGGGACCAAC 59.816 66.667 0.00 0.00 0.00 3.77
1990 2093 3.072468 CCGGCGACTAGGGACCAA 61.072 66.667 9.30 0.00 0.00 3.67
2010 2113 3.801997 ATCTTGGAGCGGCCCTGG 61.802 66.667 0.00 0.00 34.97 4.45
2011 2114 2.515523 CATCTTGGAGCGGCCCTG 60.516 66.667 0.00 0.00 34.97 4.45
2012 2115 4.496336 GCATCTTGGAGCGGCCCT 62.496 66.667 0.00 0.00 34.97 5.19
2018 2121 4.488126 TTTATTATGCGCATCTTGGAGC 57.512 40.909 29.11 0.00 0.00 4.70
2041 2144 1.003652 ACGAATTCGCCGAACGTTTTT 60.004 42.857 27.03 0.36 44.43 1.94
2042 2145 0.582960 ACGAATTCGCCGAACGTTTT 59.417 45.000 27.03 0.92 44.43 2.43
2043 2146 0.582960 AACGAATTCGCCGAACGTTT 59.417 45.000 27.03 8.88 42.91 3.60
2044 2147 0.582960 AAACGAATTCGCCGAACGTT 59.417 45.000 27.03 18.57 46.35 3.99
2045 2148 1.417372 TAAACGAATTCGCCGAACGT 58.583 45.000 27.03 9.33 44.43 3.99
2046 2149 2.490697 TTAAACGAATTCGCCGAACG 57.509 45.000 27.03 4.85 44.43 3.95
2047 2150 3.543670 TGTTTAAACGAATTCGCCGAAC 58.456 40.909 27.03 23.03 44.43 3.95
2048 2151 3.874400 TGTTTAAACGAATTCGCCGAA 57.126 38.095 27.03 15.07 44.43 4.30
2049 2152 3.425094 CCATGTTTAAACGAATTCGCCGA 60.425 43.478 27.03 9.77 44.43 5.54
2050 2153 2.843643 CCATGTTTAAACGAATTCGCCG 59.156 45.455 27.03 5.57 44.43 6.46
2051 2154 2.596862 GCCATGTTTAAACGAATTCGCC 59.403 45.455 27.03 9.10 44.43 5.54
2052 2155 3.498082 AGCCATGTTTAAACGAATTCGC 58.502 40.909 27.03 10.57 44.43 4.70
2053 2156 7.734538 ATTTAGCCATGTTTAAACGAATTCG 57.265 32.000 25.64 25.64 46.33 3.34
2054 2157 9.952341 GAAATTTAGCCATGTTTAAACGAATTC 57.048 29.630 13.45 0.00 0.00 2.17
2055 2158 8.643752 CGAAATTTAGCCATGTTTAAACGAATT 58.356 29.630 13.45 7.92 0.00 2.17
2056 2159 7.274686 CCGAAATTTAGCCATGTTTAAACGAAT 59.725 33.333 13.45 0.00 0.00 3.34
2057 2160 6.583050 CCGAAATTTAGCCATGTTTAAACGAA 59.417 34.615 13.45 0.00 0.00 3.85
2058 2161 6.087522 CCGAAATTTAGCCATGTTTAAACGA 58.912 36.000 13.45 3.72 0.00 3.85
2059 2162 5.220135 GCCGAAATTTAGCCATGTTTAAACG 60.220 40.000 13.45 0.95 0.00 3.60
2060 2163 5.062934 GGCCGAAATTTAGCCATGTTTAAAC 59.937 40.000 21.35 11.54 46.34 2.01
2061 2164 5.172205 GGCCGAAATTTAGCCATGTTTAAA 58.828 37.500 21.35 0.00 46.34 1.52
2062 2165 4.749976 GGCCGAAATTTAGCCATGTTTAA 58.250 39.130 21.35 0.00 46.34 1.52
2063 2166 4.379339 GGCCGAAATTTAGCCATGTTTA 57.621 40.909 21.35 0.00 46.34 2.01
2064 2167 3.245518 GGCCGAAATTTAGCCATGTTT 57.754 42.857 21.35 0.00 46.34 2.83
2065 2168 2.959507 GGCCGAAATTTAGCCATGTT 57.040 45.000 21.35 0.00 46.34 2.71
2084 2187 8.481641 CGAACATGTCAATATATGCCAAATTTG 58.518 33.333 11.40 11.40 0.00 2.32
2085 2188 7.652909 CCGAACATGTCAATATATGCCAAATTT 59.347 33.333 0.00 0.00 0.00 1.82
2086 2189 7.147312 CCGAACATGTCAATATATGCCAAATT 58.853 34.615 0.00 0.00 0.00 1.82
2087 2190 6.680810 CCGAACATGTCAATATATGCCAAAT 58.319 36.000 0.00 0.00 0.00 2.32
2088 2191 5.507149 GCCGAACATGTCAATATATGCCAAA 60.507 40.000 0.00 0.00 0.00 3.28
2089 2192 4.023279 GCCGAACATGTCAATATATGCCAA 60.023 41.667 0.00 0.00 0.00 4.52
2090 2193 3.501828 GCCGAACATGTCAATATATGCCA 59.498 43.478 0.00 0.00 0.00 4.92
2091 2194 3.501828 TGCCGAACATGTCAATATATGCC 59.498 43.478 0.00 0.00 0.00 4.40
2092 2195 4.214119 ACTGCCGAACATGTCAATATATGC 59.786 41.667 0.00 0.00 0.00 3.14
2093 2196 5.929697 ACTGCCGAACATGTCAATATATG 57.070 39.130 0.00 0.00 0.00 1.78
2094 2197 6.521162 TGTACTGCCGAACATGTCAATATAT 58.479 36.000 0.00 0.00 0.00 0.86
2095 2198 5.908341 TGTACTGCCGAACATGTCAATATA 58.092 37.500 0.00 0.00 0.00 0.86
2096 2199 4.765273 TGTACTGCCGAACATGTCAATAT 58.235 39.130 0.00 0.00 0.00 1.28
2097 2200 4.195225 TGTACTGCCGAACATGTCAATA 57.805 40.909 0.00 0.00 0.00 1.90
2098 2201 3.052455 TGTACTGCCGAACATGTCAAT 57.948 42.857 0.00 0.00 0.00 2.57
2099 2202 2.535012 TGTACTGCCGAACATGTCAA 57.465 45.000 0.00 0.00 0.00 3.18
2100 2203 2.760634 ATGTACTGCCGAACATGTCA 57.239 45.000 0.00 0.00 35.06 3.58
2101 2204 2.540101 GCTATGTACTGCCGAACATGTC 59.460 50.000 0.00 0.00 36.96 3.06
2102 2205 2.093711 TGCTATGTACTGCCGAACATGT 60.094 45.455 0.00 0.00 36.96 3.21
2103 2206 2.549926 TGCTATGTACTGCCGAACATG 58.450 47.619 0.00 0.00 36.96 3.21
2104 2207 2.979814 TGCTATGTACTGCCGAACAT 57.020 45.000 0.00 0.00 39.56 2.71
2105 2208 2.753055 TTGCTATGTACTGCCGAACA 57.247 45.000 0.00 0.00 0.00 3.18
2106 2209 5.047847 TCTATTTGCTATGTACTGCCGAAC 58.952 41.667 0.00 0.00 0.00 3.95
2107 2210 5.270893 TCTATTTGCTATGTACTGCCGAA 57.729 39.130 0.00 0.00 0.00 4.30
2108 2211 4.929819 TCTATTTGCTATGTACTGCCGA 57.070 40.909 0.00 0.00 0.00 5.54
2109 2212 5.050490 AGTTCTATTTGCTATGTACTGCCG 58.950 41.667 0.00 0.00 0.00 5.69
2110 2213 8.433421 TTTAGTTCTATTTGCTATGTACTGCC 57.567 34.615 0.00 0.00 0.00 4.85
2111 2214 9.704098 GTTTTAGTTCTATTTGCTATGTACTGC 57.296 33.333 0.00 0.00 0.00 4.40
2147 2250 1.868251 GCGACTACTCGGCGTTCAG 60.868 63.158 6.85 4.80 40.53 3.02
2148 2251 2.177531 GCGACTACTCGGCGTTCA 59.822 61.111 6.85 0.00 40.53 3.18
2154 2257 3.431683 GACGACGGCGACTACTCGG 62.432 68.421 22.49 0.00 40.53 4.63
2155 2258 2.021106 GACGACGGCGACTACTCG 59.979 66.667 22.49 15.07 43.28 4.18
2156 2259 2.021106 CGACGACGGCGACTACTC 59.979 66.667 22.49 1.83 41.64 2.59
2157 2260 2.734673 GACGACGACGGCGACTACT 61.735 63.158 32.70 6.45 44.46 2.57
2158 2261 2.276306 GACGACGACGGCGACTAC 60.276 66.667 32.70 13.83 44.46 2.73
2167 2270 4.395583 AAGGCCGACGACGACGAC 62.396 66.667 20.63 9.44 42.66 4.34
2168 2271 4.093952 GAAGGCCGACGACGACGA 62.094 66.667 20.63 0.00 42.66 4.20
2169 2272 3.996744 GAGAAGGCCGACGACGACG 62.997 68.421 12.66 12.66 42.66 5.12
2170 2273 2.202453 GAGAAGGCCGACGACGAC 60.202 66.667 9.28 0.00 42.66 4.34
2171 2274 3.437795 GGAGAAGGCCGACGACGA 61.438 66.667 9.28 0.00 42.66 4.20
2172 2275 3.398353 GAGGAGAAGGCCGACGACG 62.398 68.421 0.00 0.00 39.43 5.12
2173 2276 2.490685 GAGGAGAAGGCCGACGAC 59.509 66.667 0.00 0.00 0.00 4.34
2174 2277 2.754658 GGAGGAGAAGGCCGACGA 60.755 66.667 0.00 0.00 0.00 4.20
2175 2278 2.352032 AAGGAGGAGAAGGCCGACG 61.352 63.158 0.00 0.00 0.00 5.12
2176 2279 1.219393 CAAGGAGGAGAAGGCCGAC 59.781 63.158 0.00 0.00 0.00 4.79
2177 2280 1.078528 TCAAGGAGGAGAAGGCCGA 59.921 57.895 0.00 0.00 0.00 5.54
2178 2281 1.219393 GTCAAGGAGGAGAAGGCCG 59.781 63.158 0.00 0.00 0.00 6.13
2179 2282 1.219393 CGTCAAGGAGGAGAAGGCC 59.781 63.158 0.00 0.00 0.00 5.19
2180 2283 1.448717 GCGTCAAGGAGGAGAAGGC 60.449 63.158 0.00 0.00 0.00 4.35
2181 2284 1.153745 CGCGTCAAGGAGGAGAAGG 60.154 63.158 0.00 0.00 0.00 3.46
2182 2285 1.153745 CCGCGTCAAGGAGGAGAAG 60.154 63.158 4.92 0.00 0.00 2.85
2183 2286 2.970639 CCGCGTCAAGGAGGAGAA 59.029 61.111 4.92 0.00 0.00 2.87
2184 2287 3.760035 GCCGCGTCAAGGAGGAGA 61.760 66.667 4.92 0.00 0.00 3.71
2185 2288 4.821589 GGCCGCGTCAAGGAGGAG 62.822 72.222 4.92 0.00 0.00 3.69
2204 2307 3.537506 TCAGGGGTCCACCAGGGA 61.538 66.667 0.00 0.00 45.89 4.20
2205 2308 3.330720 GTCAGGGGTCCACCAGGG 61.331 72.222 0.00 0.00 42.91 4.45
2206 2309 3.330720 GGTCAGGGGTCCACCAGG 61.331 72.222 0.00 0.00 42.91 4.45
2207 2310 3.706373 CGGTCAGGGGTCCACCAG 61.706 72.222 0.00 0.00 42.91 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.