>input_sequence_85356
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------------------------------------------------------------------ATGCTA--------
CTACAACCGAGGGCGAAGGCCACCCTGGTTCTTGGAGGGGAGTCGTTCGCAGTCAGCTCTGAGTTAGGTGCCCTGTCGGA
GCAGCTGGCGGC-AATGAGGGAGAAGAGCATGGTGATCCTCAAGGACTACATCACCAAGCACAACGCTCCAAATGATGTC
CCTGATGAATCCATCGAGGGCTGATCCGATGAGGAGGGCGAAGTGCTTGCTTAAAACACGGTGAAGAAATCTAAGAAGCA
GAAGAAGAAGCAGAAGCGATCGTCCTAA----------------------------------------------------
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>chr7D_1_TraesCS7D01G521100
GCAAGAAGAACTGATAATATAATCAACAAAAGTTTCAACTGAAAAAATAAATTCTCCCAATGT--TTTAGGAGTCCACAA
GGATTGTGTCAGGCCCACTTCGCTTTCTAGCCCACGTCAGGCGCGGCCCAGGCTGGCTGCTTCTCCAGTTCTCCACCCTC
TCCCCTTCCTTGCCTCTAGAGCGGTGCTAACCTAACCCCCGGC----AAGACAGCCGCCGGCCGTGGAAGCGCGCGCCGC
CGTACAC--TCTCTCTCCCCGGTCAAGACGCGCACGCCTCCTCGCCGTCCCCCGCGGATAAGGTCTCACTCAACCCCTCA
TACTTTCTACT-CCCCCTGTATCCGTTGCTTGCGGCATCGCTGCATCCGTA----GGGTCTGTCTGATGTGGGCTGTGTC
CGTTGGATCCATGT---AAAACTGGTCTGGAGAACCGCAAAATCCAGTAGCCATGAGCCGCGCCATACGATTTTGGATTA
TTTTTTCTCCCTATTTTGTGCCCGCTTCTGTACGCAAGCGTTTCCGAGCTATGGACAAAGGATTTGGG-------TGCAG
TGTATCGTGCTGGGAGCCAGCCGCAGTTGTTACAGTATCAACACCTGGATTACAATCCCTGTTAGTAGTCCACTCCGGTG
GTTTGTTACAGCCTGAATTCGTCTTAGATTACGTCGCTG-AAAGGCGCGGCGATCTTCTGCTGCTGCATTGCCGATTAGT
TTCAGAACTGCCTCTGATTGCTATCAGTATTTCGCTTCAGTTATCTATTTTAGTCTGAATCGTGCTTAGGTGGCCTCCCC
TATAAGGCGGGGCGATTGACCTTATGCCACATAGCTGGTTAGTTTTCAGAATTTCCACTAGC--ATAGCATTAGCATTTT
GCTTTGCACTGCTGAAGAGTTTTCCTACAAATGATTCATTTTGTTGAATTGCATGTTACAAAAAAATTTGTAGGTTTCCC
ATCGGCTTCGTCATTTCTGCTTTGAATTTTCTTGTCAGGTTCAGCTGTGGACGATGGGCCAGATGAATGCTA--------
CTACAACCGAGGGCGAAGGCCACCCTGGTTCTTGGAGGGGAGTCGTTCGCAGTCAGCTCTGAGTTAGGTGCCCTGTCGGA
GCAGCTGGCGGC-AATGAGGGAGAAGAGCATGGTGATCCTCAAGGACTACATCACCAAGCACAACGCTCCAAATGATGTC
CCTGATGAATCCATCGAGGGCTGATCCGATGAGGAGGGCGAAGTGCTTGCTTAAAACACGGTGAAGAAATCTAAGAAGCA
GAAGAAGAAGCAGAAGCGATCGTCCTAAATCTCATCTCATTTATCGTGCTCTTTCTTAGTCCCTTCTTGCAAAGAATAGA
AAACATGCTGCTGGACACAAG-------------------AAAAGATCAAATTGTTGTTAGGCACTAGCTGCTTGTTTAT
GGAATTGTTGTCTGTAGATATGTGCAGGGGAACGTCACACTTTTTTGTACAGCTTGTCTGTCATATGTTTTGCTTTGGAG
GAGAATATGTGAGCTTCAGCACAAAAGTTCTTTGCTGTTAAATGTCCATCTTCAGTAAGGCGCCAACAACTTAATTGAAA
TCCAACAACCAGCAGGTCCTGATAGCAGTCAAATTTTC----------------------------TGTTTCATGAAAAG
TATATCGTGTTCTAGTGTAATTTCTGTACACACGCATCAAACTGTGGTGTAAAAAAAT-GCTTCCAGCACACTCCATCAA
CCATGTTTTTTAG----------------AAATAGTGTT-AAAACTATGTTTCCAAGCCCTATCAAAATTCTGGAAGCTT
CTCCCTTGTGGCTGGTTCACATATCTTACTCAGCATAGTACCGATCTCTAGCTTACATGTTG--AAAAGCCTGACGGCCT
GTTGTGCCATGTGGTATTGTTCAAATGTCTATGTCAACCTAACTAGTTAATCTGTAACAATCTTCCTGTTCTGGTGACGG
TGAGTGAGAGCATCTCCAGCCGTTGCCCCCCCGGGGGCGCCTAAAATCGCCGCCTGGAGGCGAGCCGGCGCAAAAAAAGG
GCCTGGGGCGAGTTGGTCCCTAGTCGCCGGCCCCAGGGCCGCTCCAAGATGCGCATAATAAAAAAAAACGTTCGGCGAAT
TCGTTTAAACATGGCTAAATTTCGGCCAAATTTGGCATATATTGACATGTTCGGCAGTACATAGCAAATAGAACTAAAAC
AAAAAATCGCTGAACGCCGAGTAGTCGCCGTCGTCGTCGTCGGCCTTCTCCTCCTTGACGCGGCCGTCCCTGGTGGACCC
CTGACCGGCGTCCCCAACGCGGACTGGTGGCGGCGGCGCGTCGTCGTCGTCGCTG
>chr7A_1
GCAAGAGAACCGATA---ATAATCAATAAAAGCTTCCATTGAAAAAAAAAGGACATCTCACCATCTTTAGGAGTCCACAA
AGATTATGTCAGGCCCACTTCGCTTTCCAGCCCACGTCAGGCGCGGCCCAGGCTGGCTGCTT------------------
TCCTCTTCCTTACCTCTACAGTGGTGCTAACCTAACGCCCGGC----AAGACAGCCGCCGGCCGTCGAAACGCACGCCGC
CGCACGCC--CTCTCTCTCCGGTCAAGACGCGCACGCCGCACCGCCGTCCCCCGTTGATAAGGTCTCACTCAACCTCTCC
TACTTTCTAC-CCCCCCTGTGTCCGTTGCTTGCGGCATCGCTGCACCCGTA----GGGTCTGTCTGATGGGGGCTGTGTC
CGTTCGGTCCATGT---AAAT-TAGTCTGAAGAACAGCAAAATCCATTAAACATGA------------------------
-------------------GCCCGCTTCTGGACGCAAGCGTATCTGAGCTATGAACAAAGGATTTGGGTGCAGTCTGCAG
TGTGTCGTGTTGGGAGCCGGCCGCAGTTGTTACAGTATCAACACCTGGATTACAATCCCTGTTAGTAGTCCACTCCGGTG
GTTTGTTTCAGCCTGAATTCGTCTTAGATTGATTCGCCACAAGGGTGCGGCGATCTTCTGCTGATGCAGAGCCGATTAGT
TTCAGAACTGCCTCAGTTCGACATCAGTATTTCGCTCCTGTTATCTGCTTCAGTCTGAATCTATCTTAGGTTGCCTTGCC
A---------------------------ACAGGGCTGGTTTGTTTTCAGAGCTGCCACTAGC--ATAGCATTAGCATTTT
GTTTTGTACCGCTGAAGAGTTTTGCTAC----GATTCATATTGTTGAGTGGGCTA-TACATATGAATTTGTTGATTTCCC
ATTGGTTTCGTCATTTGAGCTTTGAATTTTCTTGTCAGGTTCAGCTGTGGATGACGGACCAGATGAATGCTGCGGCAAGT
CTTAATCCAAGAGCGAGAGCCACCCTGGTTCTCGCTGGGGAATCGTTCACAGTCAGCTCCGAGTCCGGTACCCTGTCGGA
GCAGCTGGCGGCAAATGAGGGAGAGGAGCATGGTGATACTCAAGGAGTACATTACCAAGCACAACGCTCCGAACGATGTC
CCTGATGAATCCATCGAGGGCTCATCTGATGAGGAGGGTGAAGCACTTGCCAAAACCCCGCCAAAGAAATCTAAGAAG--
-------------AAGTGATCGTCCTAAATCTCATCATATTTATCGTGCTCTTTCTTAGTCTCCTCTTGCAAAGATCAGA
GAACATGCTGTCATCACTTGCTACTATTGCCCTGACACGAAAAAGATCAAGTTATCGTTAGGCACTAACTGCTTGTTTAT
GGAATTGTTATCTGAAGCTATGTGCAGGGGTAGTTTGCACCTTTCTGTACAAATCGTCTGTTAGATGTTTTGCTTTGGAG
GGGAATATACGAGCTTCAGCACAAAAGTTCTTTGCTGTTAAATGTCCATGTTCAGTAAGGTGCCAACAACTCAATTGAAA
TCCAACAAG----------------------------C----------------------------TGTTTCATGAAAAG
TATATCGTGTTATAGTGTATTTTCTGTACACATGCATCAAACTGTGGGTTAAAAAAAAAGCTTCCGGCACACTCAATCAA
CCATGTTTTTTAGTTTCCTTGACAGTAAAAAATAGTGTTAAAAACTATGTTTCCAAGCCCTGTCAAAATTCCTGAAGCTT
CTCCCTTGTGTCTGGTTCACATATCTTCCTCAGCATAGTACCGCTCTCTCGCTCAACGTGCTGAAAACGCCTGACGACCT
GTTGTGCTATGTGTTGTTGTTCAAGTGTCTATGTCAAAACAACTAGTTAACCAATAACAATCTTCCTGTTCCGGTGACGG
TGAG----------------------------------------------------------------------------
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>chr7B_103
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------------------------TTCCAGCCCACGCC-GGCGCGGCCCAGGCTGACTGCTTCTCCTA--------CCTC
ACCCCTTCCTTACCTCTACAGCGGTGCTAACCTAACAACGCACGACAAAGACAGCCGCCGGCCGTCGAAGCGCGCGCCGC
CGTACACCCTCTCTCTCCG----------------GCCGCCTCGCCGTCCCCCGCGGATAAGGTCTCACCCAACCTCTCC
TACTTTCTACTCCCCCCTGTATCCGTTGCTTGCGGCATCGCTGCACCCGTAGGTAGGGTCTGTCTGATGGGGGCTGTGTC
CGTTGGATCCATGTTAAAAAT-TGGTCTGGAGAGCCCCAAAATCCAGTAGCCATGAGCCGCGCCCTACGATTTTGGATTA
TTTTTTCTCCCTATTTTGTGCCCGCTTCTGTACGCAAGCGTTTCCGAGCTATGGGCGAAGGATTTGGG-------TGCAG
TGTGTCA-----GGAGCCGGCCGCAGTTGTTACAGTATCAACACCTGGATTACAATCA-------TAGTCCACTCCGGTG
GTTTGTTTCAGCCTGAATTCGTCTTAGATTGATTCACCGC-AAGGTGCGGCGATCTTCTGCTCATGCAGAGCCGGTTAGC
TTCAGAACTGCCTCAATTTGATATCAGTATTTCGCTCCAGTTAACTGTTTCAGTCTGAATCTATCTTAGGTTGCCTTACC
A---------------------------ACAGGGCTGGTTAGTTTGCAGAACTGCCGCTAGCATATAGCATTACCATTTT
GCTTTGCACCGCTGAAGAGTTCTGCAAC----AATTCATATTGTTGAATGCGCGG-TACAAATGAATTTTTAGATTTCCC
AACGGCTTCGTCATTTCTGCTCTGAATTTTCTTGTCAGGTTCAGCTGCGGACGATGGACCAGATGAATGCTGCGGCAAGT
CTAGAACCGAGAGCGAAGGCCACCCTGGTTCTCAGAGGGGAATCGTTCACAGTCAGCTCTGAGTCAGGTACCCTGTCGGA
GCAGCTGGCGGC-GATGCGGGAGAAGAGCATGGTGATCCTCAAGGGCTACATAACCAAGCACAACGCTCCGAACGATGTC
CCTGATGAATCCATCGAGGGCTCATCCGATGAGGAGGGCGAAGCGCTTGCTAAAAATCCTCTGAAGAAATCTAGGAAGCA
GAG------------GTGATCGTCCTAAATCTCATCCGATGTATCGCGCTCTTTGTTAGTCCCCTCATTCAAGTATCAGA
GAACATGCTGTTGTCCCTTGCTAGCTAA---------------------------TGTTAGGCACTAGCTGCTTGTTTAT
GGAATTGTTATCTGAAGATATGTGCAGGGGAAGGTCGCACTTTTCTGTACAACTCGTCTGTCAGATGTTTTGCTTTGGAG
GAGAATATATGAGCTTCAGCACAAAAGTTATTTGCTGTTAAATGTCCATCTTCAGTAAGGCGCCAACAACTTAATTGAAA
TCCAACAAG----------------------------CAGCAGGTCCTGATAGCAGTCAAAATTTCTGTTTCATGAAAAG
TATATTGTGTTCTAGTGTATTATCTGTACACATGCATCCAACTGTGGGGGT-AAAAAT-GATTCTAGCACACTCCATCAA
CCATGTTTTTTAGTTTCCTTATCCGTAAAAACTAGTGTT-AAAACTATGTTTCCAAGCCCTATCAAATTTGTGGAAACTT
TTATCTTGTGGTTGGTTCACATATCTTACTCAGCATAGTACCGATCTCTAGCTGAACATGTTGAAAACCCTGACG-----
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>SNPs
------SS-S-SSSSSSS--------S-----S---S-S--------S--SSS-SS-SS-SSS-----------------
S----S---------------------S--------------------------------------SSSSSSSSSS----
-----------S------S-----------------S----------------------------S--------------
--------------------------------------S------------------------------------S---S
---------------------------------------------S-----------------------S----------
--------------------SS------------------------------------------S---------------
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---S-----S--------S-------------------------------------------------------------
-------S----------------------SSS----S-------S-----------------S----SS----------
--------------S-S---S---------------S---------S---S----------SSS-------S----SS--
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---SS------------------S-S--------------------------
---------S-------------S----SSSS-------S---------S-SS--S------SS---------S------
---------------------------------------------------------S-------------S--------
---S-------S--------------------S--------S------S---------------S----S----------
----------------------------------------------------S-----------------S--S------
----------------------S--------------------S-------S-----S--S-------------------
--SSSSSSSSSSS---S-------------------SS-------------------------S-----------SS---
S---------S--SS-SSSSS-----------------------------S--S--------------------------
---------S----S-----------------S---S-------S------S--S--------S----------------
--------S-----------------------------------------------------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
-------------------S------------S--------------S--------------------------------
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-----------------------------------------------------S-SSSSS-S-----S--------S---
-------S-----S-S--------S------------SSS----------S-SS-----------------S--------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_820
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TATAAGGCGGGGCGATTGAC------------------------------------------------------------
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>reverse_2145
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----------------------------------------------------------------AAAACGTTCGGCGAAT
TCGT----------------------------------------------------------------------------
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-------------------------------------------------------
