Multiple sequence alignment - TraesCS7D01G494600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G494600 chr7D 100.000 2228 0 0 1 2228 602185807 602183580 0.000000e+00 4115
1 TraesCS7D01G494600 chr7B 91.228 1482 65 23 1 1434 682237826 682236362 0.000000e+00 1956
2 TraesCS7D01G494600 chr7B 91.111 135 9 1 1816 1947 682236215 682236081 1.760000e-41 180
3 TraesCS7D01G494600 chr7A 93.265 490 24 4 762 1247 694002579 694002095 0.000000e+00 713
4 TraesCS7D01G494600 chr7A 93.220 354 20 4 1 352 694015222 694014871 3.280000e-143 518
5 TraesCS7D01G494600 chr7A 84.691 307 18 13 1621 1927 694001788 694001511 1.680000e-71 279
6 TraesCS7D01G494600 chr7A 90.566 106 10 0 762 867 694007005 694006900 8.290000e-30 141
7 TraesCS7D01G494600 chr5D 75.574 610 89 21 1640 2228 444725004 444724434 1.710000e-61 246
8 TraesCS7D01G494600 chr5A 75.082 610 92 26 1640 2228 561657238 561656668 1.720000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G494600 chr7D 602183580 602185807 2227 True 4115 4115 100.0000 1 2228 1 chr7D.!!$R1 2227
1 TraesCS7D01G494600 chr7B 682236081 682237826 1745 True 1068 1956 91.1695 1 1947 2 chr7B.!!$R1 1946
2 TraesCS7D01G494600 chr7A 694001511 694002579 1068 True 496 713 88.9780 762 1927 2 chr7A.!!$R3 1165
3 TraesCS7D01G494600 chr5D 444724434 444725004 570 True 246 246 75.5740 1640 2228 1 chr5D.!!$R1 588
4 TraesCS7D01G494600 chr5A 561656668 561657238 570 True 230 230 75.0820 1640 2228 1 chr5A.!!$R1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.114954 ATTCTTTCAGGGGCTTGCCA 59.885 50.0 14.04 0.0 0.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 1698 0.03438 TCCCTCGAGGTCGACAAGAT 60.034 55.0 29.25 0.0 44.22 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 3.108376 CCCCTGTAGATATAAGCTCCCC 58.892 54.545 0.00 0.00 0.00 4.81
98 99 2.672961 TATGCGGACTCAACCTTCTG 57.327 50.000 0.00 0.00 0.00 3.02
152 153 7.221452 GCACTGAATCCATGTAAATCAACATTC 59.779 37.037 0.00 0.00 38.01 2.67
168 169 0.114954 ATTCTTTCAGGGGCTTGCCA 59.885 50.000 14.04 0.00 0.00 4.92
232 234 8.429641 TCCTTACTCTGATGTAAATGGGTTATC 58.570 37.037 0.00 0.00 32.80 1.75
279 281 7.423844 AACCTTCCATCCTTCCAAATATTTC 57.576 36.000 0.00 0.00 0.00 2.17
304 307 8.842280 TCGCCTATTAATAAAACAGGTATTTGG 58.158 33.333 3.69 0.00 0.00 3.28
356 359 8.657074 TGTATGAACATAATTTTAGGACTCCG 57.343 34.615 0.00 0.00 0.00 4.63
359 362 6.880484 TGAACATAATTTTAGGACTCCGCTA 58.120 36.000 0.00 0.00 0.00 4.26
360 363 6.759827 TGAACATAATTTTAGGACTCCGCTAC 59.240 38.462 0.00 0.00 0.00 3.58
361 364 6.229936 ACATAATTTTAGGACTCCGCTACA 57.770 37.500 0.00 0.00 0.00 2.74
362 365 6.646267 ACATAATTTTAGGACTCCGCTACAA 58.354 36.000 0.00 0.00 0.00 2.41
363 366 7.107542 ACATAATTTTAGGACTCCGCTACAAA 58.892 34.615 0.00 0.00 0.00 2.83
364 367 7.773690 ACATAATTTTAGGACTCCGCTACAAAT 59.226 33.333 0.00 0.00 0.00 2.32
365 368 6.436843 AATTTTAGGACTCCGCTACAAATG 57.563 37.500 0.00 0.00 0.00 2.32
446 453 2.955660 TGTTTGCCGAGGAAATCAAGTT 59.044 40.909 0.00 0.00 0.00 2.66
447 454 3.243367 TGTTTGCCGAGGAAATCAAGTTG 60.243 43.478 0.00 0.00 0.00 3.16
539 546 1.303898 TTGCCATCCTCACCCCAATA 58.696 50.000 0.00 0.00 0.00 1.90
584 592 5.875910 CCATTTGCCATGCTTAAAAATCAGA 59.124 36.000 0.00 0.00 0.00 3.27
636 654 3.126831 CAGAGTATGCTTAGGGCTTTCG 58.873 50.000 0.00 0.00 42.39 3.46
642 660 2.968675 TGCTTAGGGCTTTCGTCTAAC 58.031 47.619 0.00 0.00 42.39 2.34
741 761 4.677584 CTCTTAGTTCATTCCCGAGACAG 58.322 47.826 0.00 0.00 0.00 3.51
743 763 4.158025 TCTTAGTTCATTCCCGAGACAGAC 59.842 45.833 0.00 0.00 0.00 3.51
789 810 1.832608 ACGCTGAGTCACCAGGTGA 60.833 57.895 19.21 19.21 40.50 4.02
855 876 1.811266 ACGCGTCCTCACATGCATC 60.811 57.895 5.58 0.00 0.00 3.91
872 893 2.869503 ATCCCAGTGGCCGCTTAACG 62.870 60.000 18.42 5.08 43.15 3.18
876 897 3.047877 GTGGCCGCTTAACGTGCT 61.048 61.111 9.68 0.00 41.42 4.40
900 921 0.976073 TAAGGCCCCTCTCGTCCTTG 60.976 60.000 0.00 0.00 39.13 3.61
956 981 2.556286 AAGAAAGCTTGGGCGTAGC 58.444 52.632 0.00 1.64 43.47 3.58
995 1021 0.681564 AGAGGAGAGCATCGTCCGTT 60.682 55.000 7.72 0.00 42.63 4.44
1026 1052 2.892425 GAGATGAAGGCGTGGGCG 60.892 66.667 0.00 0.00 41.24 6.13
1285 1314 0.179145 GAACGCCGTCTAGCTTAGCA 60.179 55.000 7.07 0.00 0.00 3.49
1296 1325 0.318762 AGCTTAGCATACTAGCCGCC 59.681 55.000 7.07 0.00 34.23 6.13
1320 1349 5.346822 CGCCGCGTAATAGTAATAAAATCCT 59.653 40.000 4.92 0.00 0.00 3.24
1382 1432 6.110543 TCAGTGAAACATGCATAGATTTCG 57.889 37.500 18.23 9.61 41.43 3.46
1390 1440 2.207590 TGCATAGATTTCGCTGAGCAG 58.792 47.619 4.88 0.00 0.00 4.24
1406 1456 3.230134 GAGCAGATATGGTCTCCTCTGT 58.770 50.000 12.15 0.00 38.51 3.41
1413 1469 6.016360 CAGATATGGTCTCCTCTGTACTGAAG 60.016 46.154 3.89 0.00 34.00 3.02
1437 1493 8.152023 AGATGGTTAATCCTCTGAACTTTAGT 57.848 34.615 0.00 0.00 35.72 2.24
1461 1517 2.732282 CGCACGAATTCAGAGAGCTGTA 60.732 50.000 6.22 0.00 42.84 2.74
1470 1526 7.253917 CGAATTCAGAGAGCTGTATGTAGTTTG 60.254 40.741 5.31 0.50 42.84 2.93
1480 1536 5.063564 GCTGTATGTAGTTTGCTGTAAGGAC 59.936 44.000 0.00 0.00 29.42 3.85
1485 1541 3.275617 AGTTTGCTGTAAGGACACACA 57.724 42.857 0.00 0.00 37.44 3.72
1487 1543 2.680841 GTTTGCTGTAAGGACACACACA 59.319 45.455 0.00 0.00 34.87 3.72
1493 1549 3.994392 CTGTAAGGACACACACATACACC 59.006 47.826 0.00 0.00 0.00 4.16
1494 1550 2.561478 AAGGACACACACATACACCC 57.439 50.000 0.00 0.00 0.00 4.61
1495 1551 1.429930 AGGACACACACATACACCCA 58.570 50.000 0.00 0.00 0.00 4.51
1496 1552 1.347707 AGGACACACACATACACCCAG 59.652 52.381 0.00 0.00 0.00 4.45
1497 1553 1.156736 GACACACACATACACCCAGC 58.843 55.000 0.00 0.00 0.00 4.85
1498 1554 0.250727 ACACACACATACACCCAGCC 60.251 55.000 0.00 0.00 0.00 4.85
1499 1555 0.250684 CACACACATACACCCAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
1500 1556 0.250727 ACACACATACACCCAGCCAC 60.251 55.000 0.00 0.00 0.00 5.01
1501 1557 0.036732 CACACATACACCCAGCCACT 59.963 55.000 0.00 0.00 0.00 4.00
1502 1558 0.036732 ACACATACACCCAGCCACTG 59.963 55.000 0.00 0.00 0.00 3.66
1503 1559 0.324614 CACATACACCCAGCCACTGA 59.675 55.000 0.00 0.00 32.44 3.41
1504 1560 0.324943 ACATACACCCAGCCACTGAC 59.675 55.000 0.00 0.00 32.44 3.51
1505 1561 0.324614 CATACACCCAGCCACTGACA 59.675 55.000 0.00 0.00 32.44 3.58
1523 1579 5.089970 TGACATATCAGAAGTTCACCCAG 57.910 43.478 5.50 0.00 0.00 4.45
1524 1580 4.532126 TGACATATCAGAAGTTCACCCAGT 59.468 41.667 5.50 0.00 0.00 4.00
1525 1581 5.013079 TGACATATCAGAAGTTCACCCAGTT 59.987 40.000 5.50 0.00 0.00 3.16
1526 1582 5.491982 ACATATCAGAAGTTCACCCAGTTC 58.508 41.667 5.50 0.00 0.00 3.01
1527 1583 2.930826 TCAGAAGTTCACCCAGTTCC 57.069 50.000 5.50 0.00 0.00 3.62
1528 1584 1.420138 TCAGAAGTTCACCCAGTTCCC 59.580 52.381 5.50 0.00 0.00 3.97
1529 1585 0.396811 AGAAGTTCACCCAGTTCCCG 59.603 55.000 5.50 0.00 0.00 5.14
1530 1586 0.605589 GAAGTTCACCCAGTTCCCGG 60.606 60.000 0.00 0.00 0.00 5.73
1531 1587 1.350310 AAGTTCACCCAGTTCCCGGT 61.350 55.000 0.00 0.00 0.00 5.28
1532 1588 1.302271 GTTCACCCAGTTCCCGGTC 60.302 63.158 0.00 0.00 0.00 4.79
1533 1589 1.766864 TTCACCCAGTTCCCGGTCA 60.767 57.895 0.00 0.00 0.00 4.02
1534 1590 1.131303 TTCACCCAGTTCCCGGTCAT 61.131 55.000 0.00 0.00 0.00 3.06
1535 1591 0.252330 TCACCCAGTTCCCGGTCATA 60.252 55.000 0.00 0.00 0.00 2.15
1536 1592 0.616371 CACCCAGTTCCCGGTCATAA 59.384 55.000 0.00 0.00 0.00 1.90
1537 1593 0.616891 ACCCAGTTCCCGGTCATAAC 59.383 55.000 0.00 0.00 0.00 1.89
1538 1594 0.909623 CCCAGTTCCCGGTCATAACT 59.090 55.000 0.00 1.64 33.82 2.24
1539 1595 1.406887 CCCAGTTCCCGGTCATAACTG 60.407 57.143 20.70 20.70 46.18 3.16
1543 1599 4.360951 AGTTCCCGGTCATAACTGAAAA 57.639 40.909 0.00 0.00 32.38 2.29
1544 1600 4.070009 AGTTCCCGGTCATAACTGAAAAC 58.930 43.478 0.00 0.00 32.38 2.43
1545 1601 3.773418 TCCCGGTCATAACTGAAAACA 57.227 42.857 0.00 0.00 33.20 2.83
1546 1602 4.295141 TCCCGGTCATAACTGAAAACAT 57.705 40.909 0.00 0.00 33.20 2.71
1547 1603 4.258543 TCCCGGTCATAACTGAAAACATC 58.741 43.478 0.00 0.00 33.20 3.06
1548 1604 4.006989 CCCGGTCATAACTGAAAACATCA 58.993 43.478 0.00 0.00 33.20 3.07
1549 1605 4.640201 CCCGGTCATAACTGAAAACATCAT 59.360 41.667 0.00 0.00 37.44 2.45
1550 1606 5.820423 CCCGGTCATAACTGAAAACATCATA 59.180 40.000 0.00 0.00 37.44 2.15
1551 1607 6.238374 CCCGGTCATAACTGAAAACATCATAC 60.238 42.308 0.00 0.00 37.44 2.39
1552 1608 6.538742 CCGGTCATAACTGAAAACATCATACT 59.461 38.462 0.00 0.00 37.44 2.12
1553 1609 7.401860 CGGTCATAACTGAAAACATCATACTG 58.598 38.462 0.00 0.00 37.44 2.74
1554 1610 7.064609 CGGTCATAACTGAAAACATCATACTGT 59.935 37.037 0.00 0.00 37.44 3.55
1555 1611 9.378551 GGTCATAACTGAAAACATCATACTGTA 57.621 33.333 0.00 0.00 37.44 2.74
1557 1613 9.599866 TCATAACTGAAAACATCATACTGTAGG 57.400 33.333 0.00 0.00 37.44 3.18
1558 1614 9.599866 CATAACTGAAAACATCATACTGTAGGA 57.400 33.333 4.51 4.51 37.44 2.94
1561 1617 8.083828 ACTGAAAACATCATACTGTAGGATCT 57.916 34.615 11.67 0.00 37.44 2.75
1564 1620 6.426646 AAACATCATACTGTAGGATCTCCC 57.573 41.667 11.67 0.00 36.42 4.30
1590 1646 2.105466 CGCCTGAAGAAGCAGAGCC 61.105 63.158 0.00 0.00 38.14 4.70
1591 1647 1.299321 GCCTGAAGAAGCAGAGCCT 59.701 57.895 0.00 0.00 38.14 4.58
1592 1648 0.539051 GCCTGAAGAAGCAGAGCCTA 59.461 55.000 0.00 0.00 38.14 3.93
1593 1649 1.742071 GCCTGAAGAAGCAGAGCCTAC 60.742 57.143 0.00 0.00 38.14 3.18
1594 1650 1.830477 CCTGAAGAAGCAGAGCCTACT 59.170 52.381 0.00 0.00 38.14 2.57
1596 1652 3.260740 CTGAAGAAGCAGAGCCTACTTG 58.739 50.000 0.00 0.00 38.14 3.16
1597 1653 2.006169 GAAGAAGCAGAGCCTACTTGC 58.994 52.381 0.00 0.00 0.00 4.01
1598 1654 0.251634 AGAAGCAGAGCCTACTTGCC 59.748 55.000 0.00 0.00 0.00 4.52
1599 1655 0.251634 GAAGCAGAGCCTACTTGCCT 59.748 55.000 0.00 0.00 0.00 4.75
1600 1656 0.035630 AAGCAGAGCCTACTTGCCTG 60.036 55.000 0.00 0.00 34.59 4.85
1601 1657 2.111582 GCAGAGCCTACTTGCCTGC 61.112 63.158 0.00 0.00 43.29 4.85
1603 1659 1.920325 AGAGCCTACTTGCCTGCCA 60.920 57.895 0.00 0.00 0.00 4.92
1605 1661 2.190488 GAGCCTACTTGCCTGCCACT 62.190 60.000 0.00 0.00 0.00 4.00
1608 1664 1.739067 CCTACTTGCCTGCCACTAAC 58.261 55.000 0.00 0.00 0.00 2.34
1609 1665 1.279271 CCTACTTGCCTGCCACTAACT 59.721 52.381 0.00 0.00 0.00 2.24
1610 1666 2.500098 CCTACTTGCCTGCCACTAACTA 59.500 50.000 0.00 0.00 0.00 2.24
1611 1667 2.474410 ACTTGCCTGCCACTAACTAC 57.526 50.000 0.00 0.00 0.00 2.73
1612 1668 1.978580 ACTTGCCTGCCACTAACTACT 59.021 47.619 0.00 0.00 0.00 2.57
1614 1670 1.938585 TGCCTGCCACTAACTACTCT 58.061 50.000 0.00 0.00 0.00 3.24
1615 1671 1.550524 TGCCTGCCACTAACTACTCTG 59.449 52.381 0.00 0.00 0.00 3.35
1618 1697 3.739519 GCCTGCCACTAACTACTCTGATG 60.740 52.174 0.00 0.00 0.00 3.07
1619 1698 3.701542 CCTGCCACTAACTACTCTGATGA 59.298 47.826 0.00 0.00 0.00 2.92
1623 1702 5.658634 TGCCACTAACTACTCTGATGATCTT 59.341 40.000 0.00 0.00 0.00 2.40
1629 1708 5.493133 ACTACTCTGATGATCTTGTCGAC 57.507 43.478 9.11 9.11 0.00 4.20
1655 1734 1.501604 GGGAGGAGGAGTAGATGAGGT 59.498 57.143 0.00 0.00 0.00 3.85
1690 1769 3.706140 GCGTAGAAGCCGATGGTG 58.294 61.111 0.00 0.00 0.00 4.17
1691 1770 1.141019 GCGTAGAAGCCGATGGTGA 59.859 57.895 0.00 0.00 0.00 4.02
1692 1771 0.249489 GCGTAGAAGCCGATGGTGAT 60.249 55.000 0.00 0.00 0.00 3.06
1693 1772 1.772182 CGTAGAAGCCGATGGTGATC 58.228 55.000 0.00 0.00 0.00 2.92
1726 1805 1.043673 AAGAAGGCGTAGGAGGCGAT 61.044 55.000 0.00 0.00 41.99 4.58
1796 1875 1.876156 GTCCAGCTTGGTGAAGAAGTG 59.124 52.381 1.00 0.00 39.03 3.16
1797 1876 1.202806 TCCAGCTTGGTGAAGAAGTGG 60.203 52.381 1.00 0.00 39.03 4.00
1798 1877 1.202806 CCAGCTTGGTGAAGAAGTGGA 60.203 52.381 1.00 0.00 31.35 4.02
1799 1878 2.575532 CAGCTTGGTGAAGAAGTGGAA 58.424 47.619 0.00 0.00 0.00 3.53
1800 1879 2.551459 CAGCTTGGTGAAGAAGTGGAAG 59.449 50.000 0.00 0.00 0.00 3.46
1801 1880 2.173569 AGCTTGGTGAAGAAGTGGAAGT 59.826 45.455 0.00 0.00 0.00 3.01
1802 1881 3.391296 AGCTTGGTGAAGAAGTGGAAGTA 59.609 43.478 0.00 0.00 0.00 2.24
1803 1882 3.748568 GCTTGGTGAAGAAGTGGAAGTAG 59.251 47.826 0.00 0.00 0.00 2.57
1804 1883 3.402628 TGGTGAAGAAGTGGAAGTAGC 57.597 47.619 0.00 0.00 0.00 3.58
1805 1884 2.972713 TGGTGAAGAAGTGGAAGTAGCT 59.027 45.455 0.00 0.00 0.00 3.32
1806 1885 3.244215 TGGTGAAGAAGTGGAAGTAGCTG 60.244 47.826 0.00 0.00 0.00 4.24
1807 1886 3.006967 GGTGAAGAAGTGGAAGTAGCTGA 59.993 47.826 0.00 0.00 0.00 4.26
1808 1887 4.503296 GGTGAAGAAGTGGAAGTAGCTGAA 60.503 45.833 0.00 0.00 0.00 3.02
1809 1888 4.688413 GTGAAGAAGTGGAAGTAGCTGAAG 59.312 45.833 0.00 0.00 0.00 3.02
1810 1889 4.588951 TGAAGAAGTGGAAGTAGCTGAAGA 59.411 41.667 0.00 0.00 0.00 2.87
1811 1890 5.070446 TGAAGAAGTGGAAGTAGCTGAAGAA 59.930 40.000 0.00 0.00 0.00 2.52
1812 1891 5.146010 AGAAGTGGAAGTAGCTGAAGAAG 57.854 43.478 0.00 0.00 0.00 2.85
1813 1892 4.591072 AGAAGTGGAAGTAGCTGAAGAAGT 59.409 41.667 0.00 0.00 0.00 3.01
1814 1893 4.264460 AGTGGAAGTAGCTGAAGAAGTG 57.736 45.455 0.00 0.00 0.00 3.16
1904 1986 2.496817 GGTAGTCCTCGCTGCAGG 59.503 66.667 17.12 5.82 34.40 4.85
1937 2019 2.265739 GCACCACTGCGATCTCCA 59.734 61.111 0.00 0.00 32.44 3.86
1947 2029 1.226802 CGATCTCCACGCAGGTCAG 60.227 63.158 0.00 0.00 39.02 3.51
1948 2030 1.520342 GATCTCCACGCAGGTCAGC 60.520 63.158 0.00 0.00 39.02 4.26
1960 2042 2.512515 GTCAGCGCCAGGATCACC 60.513 66.667 2.29 0.00 0.00 4.02
1964 2046 3.499737 GCGCCAGGATCACCAACG 61.500 66.667 0.00 0.00 38.94 4.10
1969 2051 2.045926 AGGATCACCAACGCCAGC 60.046 61.111 0.00 0.00 38.94 4.85
1971 2053 2.401766 GGATCACCAACGCCAGCAG 61.402 63.158 0.00 0.00 35.97 4.24
1972 2054 3.044059 GATCACCAACGCCAGCAGC 62.044 63.158 0.00 0.00 38.52 5.25
2004 2086 5.479306 GAAGATGTAGTAGAACTGGTGCAA 58.521 41.667 0.00 0.00 0.00 4.08
2064 2164 3.188786 GCCGATCAGCACCGACAC 61.189 66.667 0.00 0.00 0.00 3.67
2065 2165 2.261361 CCGATCAGCACCGACACA 59.739 61.111 0.00 0.00 0.00 3.72
2066 2166 1.807165 CCGATCAGCACCGACACAG 60.807 63.158 0.00 0.00 0.00 3.66
2067 2167 2.447887 CGATCAGCACCGACACAGC 61.448 63.158 0.00 0.00 0.00 4.40
2083 2183 3.131478 GCCGGGTGCATGTACCAC 61.131 66.667 30.71 19.82 42.69 4.16
2085 2185 2.817834 CGGGTGCATGTACCACGG 60.818 66.667 30.71 17.14 42.69 4.94
2086 2186 3.131478 GGGTGCATGTACCACGGC 61.131 66.667 30.71 12.53 42.69 5.68
2092 2192 1.815421 CATGTACCACGGCTGCTCC 60.815 63.158 0.00 0.00 0.00 4.70
2116 2216 3.202706 GGCCGCGGGATCTTGTTC 61.203 66.667 29.38 6.13 0.00 3.18
2120 2220 2.165301 CGCGGGATCTTGTTCGTCC 61.165 63.158 0.00 0.00 0.00 4.79
2121 2221 2.165301 GCGGGATCTTGTTCGTCCG 61.165 63.158 0.00 0.00 40.33 4.79
2125 2225 1.359459 GGATCTTGTTCGTCCGCACC 61.359 60.000 0.00 0.00 0.00 5.01
2154 2254 4.082523 CGCGGGCCTCCTCTTGAA 62.083 66.667 0.84 0.00 0.00 2.69
2158 2258 0.107945 CGGGCCTCCTCTTGAAGAAG 60.108 60.000 0.84 0.00 0.00 2.85
2162 2262 0.610687 CCTCCTCTTGAAGAAGCCGT 59.389 55.000 0.00 0.00 0.00 5.68
2173 2273 3.387225 GAAGCCGTGGTAGCTCCCC 62.387 68.421 0.00 0.00 40.49 4.81
2182 2282 1.079336 GTAGCTCCCCACGAACACC 60.079 63.158 0.00 0.00 0.00 4.16
2185 2285 2.358737 CTCCCCACGAACACCAGC 60.359 66.667 0.00 0.00 0.00 4.85
2209 2309 1.880340 CGAGATGCCGAACCAGAGC 60.880 63.158 0.00 0.00 0.00 4.09
2212 2312 2.437359 ATGCCGAACCAGAGCAGC 60.437 61.111 0.00 0.00 40.40 5.25
2218 2318 1.072159 GAACCAGAGCAGCACCAGT 59.928 57.895 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.564947 ACCAGACGAAGAAGCAGAAGAT 59.435 45.455 0.00 0.00 0.00 2.40
74 75 3.185246 AGGTTGAGTCCGCATAATGAG 57.815 47.619 0.00 0.00 0.00 2.90
98 99 7.603651 TCTGATCAAGTACCTTAACAGAGAAC 58.396 38.462 0.00 0.00 30.04 3.01
119 120 4.025040 ACATGGATTCAGTGCTTTCTGA 57.975 40.909 0.00 3.49 41.85 3.27
122 123 6.855836 TGATTTACATGGATTCAGTGCTTTC 58.144 36.000 0.00 0.00 0.00 2.62
127 128 8.464404 AGAATGTTGATTTACATGGATTCAGTG 58.536 33.333 0.00 0.00 38.69 3.66
128 129 8.585471 AGAATGTTGATTTACATGGATTCAGT 57.415 30.769 0.00 0.00 38.69 3.41
152 153 0.901580 ACATGGCAAGCCCCTGAAAG 60.902 55.000 8.89 0.00 34.56 2.62
259 261 4.340950 GGCGAAATATTTGGAAGGATGGAA 59.659 41.667 13.72 0.00 0.00 3.53
279 281 8.626526 ACCAAATACCTGTTTTATTAATAGGCG 58.373 33.333 1.74 0.00 31.69 5.52
337 340 6.646267 TGTAGCGGAGTCCTAAAATTATGTT 58.354 36.000 7.77 0.00 0.00 2.71
342 345 6.093633 GTCATTTGTAGCGGAGTCCTAAAATT 59.906 38.462 7.77 0.00 0.00 1.82
343 346 5.585047 GTCATTTGTAGCGGAGTCCTAAAAT 59.415 40.000 7.77 3.53 0.00 1.82
356 359 8.721478 TCTAAAGTCAGATTTGTCATTTGTAGC 58.279 33.333 0.00 0.00 0.00 3.58
400 403 8.776470 CACAAATTGCCATAGAAAAAGTTTGAT 58.224 29.630 0.00 0.00 0.00 2.57
401 404 7.768120 ACACAAATTGCCATAGAAAAAGTTTGA 59.232 29.630 0.00 0.00 0.00 2.69
402 405 7.918643 ACACAAATTGCCATAGAAAAAGTTTG 58.081 30.769 0.00 0.00 0.00 2.93
404 407 8.397148 CAAACACAAATTGCCATAGAAAAAGTT 58.603 29.630 0.00 0.00 0.00 2.66
405 408 7.467131 GCAAACACAAATTGCCATAGAAAAAGT 60.467 33.333 0.00 0.00 45.73 2.66
406 409 6.852345 GCAAACACAAATTGCCATAGAAAAAG 59.148 34.615 0.00 0.00 45.73 2.27
446 453 0.751452 TTGCCATGCTTGCAAACTCA 59.249 45.000 0.00 0.00 45.11 3.41
447 454 3.591979 TTGCCATGCTTGCAAACTC 57.408 47.368 0.00 0.00 45.11 3.01
515 522 0.740737 GGGTGAGGATGGCAAATTCG 59.259 55.000 0.00 0.00 0.00 3.34
584 592 8.677148 ATTACGGTAATGCTAAAATCTGACAT 57.323 30.769 12.39 0.00 0.00 3.06
636 654 8.779354 AACAGTTTTCTCATATGGAGTTAGAC 57.221 34.615 2.13 0.00 44.40 2.59
741 761 3.315749 CCCTACATCTGGAGTACTTCGTC 59.684 52.174 0.00 0.00 0.00 4.20
743 763 3.288964 ACCCTACATCTGGAGTACTTCG 58.711 50.000 0.00 0.00 0.00 3.79
786 807 2.472909 GCGCCAGCATACCCTTCAC 61.473 63.158 0.00 0.00 44.35 3.18
847 868 2.043652 GGCCACTGGGATGCATGT 60.044 61.111 2.46 0.00 35.59 3.21
855 876 3.124921 CGTTAAGCGGCCACTGGG 61.125 66.667 2.24 0.00 36.85 4.45
872 893 0.393132 GAGGGGCCTTAAGTGAGCAC 60.393 60.000 0.84 0.00 0.00 4.40
876 897 0.252103 ACGAGAGGGGCCTTAAGTGA 60.252 55.000 0.84 0.00 0.00 3.41
900 921 1.739049 CTGAGATGAGCCCTCGGAC 59.261 63.158 0.00 0.00 38.90 4.79
962 987 0.033991 TCCTCTTCTCGCTGCCTAGT 60.034 55.000 0.00 0.00 0.00 2.57
995 1021 1.995066 ATCTCCGGCCACATGGTGA 60.995 57.895 2.24 2.23 35.23 4.02
1026 1052 4.832608 GGGTCGTCGGCCATGGAC 62.833 72.222 19.28 13.35 0.00 4.02
1222 1248 1.523258 CGATGGCAGCTTCTCAGGG 60.523 63.158 0.00 0.00 0.00 4.45
1296 1325 5.346822 AGGATTTTATTACTATTACGCGGCG 59.653 40.000 22.36 22.36 0.00 6.46
1320 1349 3.319198 GAGCACACGGAAGGGGGA 61.319 66.667 0.00 0.00 44.61 4.81
1365 1415 4.497006 GCTCAGCGAAATCTATGCATGTTT 60.497 41.667 10.16 7.80 0.00 2.83
1382 1432 2.453983 GGAGACCATATCTGCTCAGC 57.546 55.000 0.00 0.00 42.38 4.26
1390 1440 6.065374 TCTTCAGTACAGAGGAGACCATATC 58.935 44.000 0.00 0.00 0.00 1.63
1406 1456 7.400339 AGTTCAGAGGATTAACCATCTTCAGTA 59.600 37.037 0.00 0.00 39.92 2.74
1413 1469 9.315525 GTACTAAAGTTCAGAGGATTAACCATC 57.684 37.037 0.00 0.00 42.04 3.51
1437 1493 1.469251 GCTCTCTGAATTCGTGCGGTA 60.469 52.381 0.04 0.00 0.00 4.02
1461 1517 4.755123 GTGTGTCCTTACAGCAAACTACAT 59.245 41.667 0.00 0.00 35.91 2.29
1470 1526 3.432252 GTGTATGTGTGTGTCCTTACAGC 59.568 47.826 0.00 0.00 35.91 4.40
1480 1536 0.250684 TGGCTGGGTGTATGTGTGTG 60.251 55.000 0.00 0.00 0.00 3.82
1485 1541 0.324943 GTCAGTGGCTGGGTGTATGT 59.675 55.000 0.00 0.00 31.51 2.29
1487 1543 1.289160 ATGTCAGTGGCTGGGTGTAT 58.711 50.000 0.00 0.00 31.51 2.29
1501 1557 4.532126 ACTGGGTGAACTTCTGATATGTCA 59.468 41.667 0.00 0.00 0.00 3.58
1502 1558 5.091261 ACTGGGTGAACTTCTGATATGTC 57.909 43.478 0.00 0.00 0.00 3.06
1503 1559 5.491982 GAACTGGGTGAACTTCTGATATGT 58.508 41.667 0.00 0.00 0.00 2.29
1504 1560 4.878397 GGAACTGGGTGAACTTCTGATATG 59.122 45.833 0.00 0.00 0.00 1.78
1505 1561 4.080299 GGGAACTGGGTGAACTTCTGATAT 60.080 45.833 0.00 0.00 0.00 1.63
1523 1579 3.816523 TGTTTTCAGTTATGACCGGGAAC 59.183 43.478 6.32 4.47 34.35 3.62
1524 1580 4.088056 TGTTTTCAGTTATGACCGGGAA 57.912 40.909 6.32 0.00 34.35 3.97
1525 1581 3.773418 TGTTTTCAGTTATGACCGGGA 57.227 42.857 6.32 0.00 34.35 5.14
1526 1582 4.006989 TGATGTTTTCAGTTATGACCGGG 58.993 43.478 6.32 0.00 34.35 5.73
1527 1583 5.818136 ATGATGTTTTCAGTTATGACCGG 57.182 39.130 0.00 0.00 37.89 5.28
1528 1584 7.064609 ACAGTATGATGTTTTCAGTTATGACCG 59.935 37.037 0.00 0.00 39.69 4.79
1529 1585 8.268850 ACAGTATGATGTTTTCAGTTATGACC 57.731 34.615 0.00 0.00 39.69 4.02
1531 1587 9.599866 CCTACAGTATGATGTTTTCAGTTATGA 57.400 33.333 0.00 0.00 39.69 2.15
1532 1588 9.599866 TCCTACAGTATGATGTTTTCAGTTATG 57.400 33.333 0.00 0.00 39.69 1.90
1534 1590 9.817809 GATCCTACAGTATGATGTTTTCAGTTA 57.182 33.333 3.26 0.00 39.69 2.24
1535 1591 8.543774 AGATCCTACAGTATGATGTTTTCAGTT 58.456 33.333 3.26 0.00 39.69 3.16
1536 1592 8.083828 AGATCCTACAGTATGATGTTTTCAGT 57.916 34.615 3.26 0.00 39.69 3.41
1537 1593 7.655328 GGAGATCCTACAGTATGATGTTTTCAG 59.345 40.741 3.26 0.00 39.69 3.02
1538 1594 7.419057 GGGAGATCCTACAGTATGATGTTTTCA 60.419 40.741 3.26 0.00 36.24 2.69
1539 1595 6.931840 GGGAGATCCTACAGTATGATGTTTTC 59.068 42.308 3.26 0.00 36.24 2.29
1540 1596 6.386927 TGGGAGATCCTACAGTATGATGTTTT 59.613 38.462 3.26 0.00 36.39 2.43
1541 1597 5.905331 TGGGAGATCCTACAGTATGATGTTT 59.095 40.000 3.26 0.00 36.39 2.83
1542 1598 5.467738 TGGGAGATCCTACAGTATGATGTT 58.532 41.667 3.26 0.00 36.39 2.71
1543 1599 5.079998 TGGGAGATCCTACAGTATGATGT 57.920 43.478 3.26 0.00 36.39 3.06
1544 1600 5.777223 TCTTGGGAGATCCTACAGTATGATG 59.223 44.000 3.26 0.00 36.39 3.07
1545 1601 5.970289 TCTTGGGAGATCCTACAGTATGAT 58.030 41.667 0.00 0.00 36.39 2.45
1546 1602 5.403558 TCTTGGGAGATCCTACAGTATGA 57.596 43.478 0.00 0.00 36.39 2.15
1547 1603 7.575909 CGTTATCTTGGGAGATCCTACAGTATG 60.576 44.444 0.00 0.00 41.68 2.39
1548 1604 6.434652 CGTTATCTTGGGAGATCCTACAGTAT 59.565 42.308 0.00 0.00 41.68 2.12
1549 1605 5.768662 CGTTATCTTGGGAGATCCTACAGTA 59.231 44.000 0.00 0.00 41.68 2.74
1550 1606 4.585162 CGTTATCTTGGGAGATCCTACAGT 59.415 45.833 0.00 0.00 41.68 3.55
1551 1607 4.559704 GCGTTATCTTGGGAGATCCTACAG 60.560 50.000 0.00 0.00 41.68 2.74
1552 1608 3.321111 GCGTTATCTTGGGAGATCCTACA 59.679 47.826 0.00 0.00 41.68 2.74
1553 1609 3.306156 GGCGTTATCTTGGGAGATCCTAC 60.306 52.174 0.00 0.00 41.68 3.18
1554 1610 2.897969 GGCGTTATCTTGGGAGATCCTA 59.102 50.000 0.00 0.00 41.68 2.94
1555 1611 1.694696 GGCGTTATCTTGGGAGATCCT 59.305 52.381 0.00 0.00 41.68 3.24
1556 1612 1.694696 AGGCGTTATCTTGGGAGATCC 59.305 52.381 0.00 0.00 41.68 3.36
1557 1613 2.365617 TCAGGCGTTATCTTGGGAGATC 59.634 50.000 0.00 0.00 41.68 2.75
1558 1614 2.398588 TCAGGCGTTATCTTGGGAGAT 58.601 47.619 0.00 0.00 44.67 2.75
1561 1617 2.184533 TCTTCAGGCGTTATCTTGGGA 58.815 47.619 0.00 0.00 0.00 4.37
1564 1620 3.002791 TGCTTCTTCAGGCGTTATCTTG 58.997 45.455 0.00 0.00 0.00 3.02
1590 1646 2.770164 AGTTAGTGGCAGGCAAGTAG 57.230 50.000 0.00 0.00 0.00 2.57
1591 1647 3.170717 AGTAGTTAGTGGCAGGCAAGTA 58.829 45.455 0.00 0.00 0.00 2.24
1592 1648 1.978580 AGTAGTTAGTGGCAGGCAAGT 59.021 47.619 0.00 0.00 0.00 3.16
1593 1649 2.234908 AGAGTAGTTAGTGGCAGGCAAG 59.765 50.000 0.00 0.00 0.00 4.01
1594 1650 2.028112 CAGAGTAGTTAGTGGCAGGCAA 60.028 50.000 0.00 0.00 0.00 4.52
1596 1652 1.825474 TCAGAGTAGTTAGTGGCAGGC 59.175 52.381 0.00 0.00 0.00 4.85
1597 1653 3.701542 TCATCAGAGTAGTTAGTGGCAGG 59.298 47.826 0.00 0.00 0.00 4.85
1598 1654 4.991153 TCATCAGAGTAGTTAGTGGCAG 57.009 45.455 0.00 0.00 0.00 4.85
1599 1655 5.204292 AGATCATCAGAGTAGTTAGTGGCA 58.796 41.667 0.00 0.00 0.00 4.92
1600 1656 5.782893 AGATCATCAGAGTAGTTAGTGGC 57.217 43.478 0.00 0.00 0.00 5.01
1601 1657 7.106439 ACAAGATCATCAGAGTAGTTAGTGG 57.894 40.000 0.00 0.00 0.00 4.00
1603 1659 6.824196 TCGACAAGATCATCAGAGTAGTTAGT 59.176 38.462 0.00 0.00 0.00 2.24
1605 1661 6.038382 GGTCGACAAGATCATCAGAGTAGTTA 59.962 42.308 18.91 0.00 0.00 2.24
1608 1664 4.578516 AGGTCGACAAGATCATCAGAGTAG 59.421 45.833 18.91 0.00 30.60 2.57
1609 1665 4.527944 AGGTCGACAAGATCATCAGAGTA 58.472 43.478 18.91 0.00 30.60 2.59
1610 1666 3.360867 AGGTCGACAAGATCATCAGAGT 58.639 45.455 18.91 0.00 30.60 3.24
1611 1667 3.547813 CGAGGTCGACAAGATCATCAGAG 60.548 52.174 18.91 0.00 43.02 3.35
1612 1668 2.356069 CGAGGTCGACAAGATCATCAGA 59.644 50.000 18.91 0.00 43.02 3.27
1614 1670 2.356069 CTCGAGGTCGACAAGATCATCA 59.644 50.000 18.91 0.00 44.22 3.07
1615 1671 2.287308 CCTCGAGGTCGACAAGATCATC 60.287 54.545 24.04 0.00 44.22 2.92
1618 1697 0.382515 CCCTCGAGGTCGACAAGATC 59.617 60.000 29.25 8.42 44.22 2.75
1619 1698 0.034380 TCCCTCGAGGTCGACAAGAT 60.034 55.000 29.25 0.00 44.22 2.40
1636 1715 2.962421 CAACCTCATCTACTCCTCCTCC 59.038 54.545 0.00 0.00 0.00 4.30
1637 1716 2.962421 CCAACCTCATCTACTCCTCCTC 59.038 54.545 0.00 0.00 0.00 3.71
1638 1717 2.316372 ACCAACCTCATCTACTCCTCCT 59.684 50.000 0.00 0.00 0.00 3.69
1655 1734 0.823356 GCCTGCTTCTGGTTCACCAA 60.823 55.000 0.00 0.00 46.97 3.67
1690 1769 2.938539 CTTCGTCCTCACCGGCGATC 62.939 65.000 9.30 0.00 39.70 3.69
1691 1770 3.064987 CTTCGTCCTCACCGGCGAT 62.065 63.158 9.30 0.00 39.70 4.58
1692 1771 3.744719 CTTCGTCCTCACCGGCGA 61.745 66.667 9.30 0.00 38.78 5.54
1693 1772 3.277211 TTCTTCGTCCTCACCGGCG 62.277 63.158 0.00 0.00 34.84 6.46
1726 1805 2.688446 CTCTACTTCGGGTACATGCTCA 59.312 50.000 0.00 0.00 0.00 4.26
1770 1849 1.059098 TCACCAAGCTGGACATCAGT 58.941 50.000 8.91 0.00 45.08 3.41
1771 1850 2.082231 CTTCACCAAGCTGGACATCAG 58.918 52.381 8.91 0.00 40.96 2.90
1772 1851 1.699083 TCTTCACCAAGCTGGACATCA 59.301 47.619 8.91 0.00 40.96 3.07
1773 1852 2.479566 TCTTCACCAAGCTGGACATC 57.520 50.000 8.91 0.00 40.96 3.06
1796 1875 3.963428 TCCACTTCTTCAGCTACTTCC 57.037 47.619 0.00 0.00 0.00 3.46
1797 1876 4.249661 CCTTCCACTTCTTCAGCTACTTC 58.750 47.826 0.00 0.00 0.00 3.01
1798 1877 3.558109 GCCTTCCACTTCTTCAGCTACTT 60.558 47.826 0.00 0.00 0.00 2.24
1799 1878 2.027653 GCCTTCCACTTCTTCAGCTACT 60.028 50.000 0.00 0.00 0.00 2.57
1800 1879 2.351455 GCCTTCCACTTCTTCAGCTAC 58.649 52.381 0.00 0.00 0.00 3.58
1801 1880 1.066858 CGCCTTCCACTTCTTCAGCTA 60.067 52.381 0.00 0.00 0.00 3.32
1802 1881 0.321122 CGCCTTCCACTTCTTCAGCT 60.321 55.000 0.00 0.00 0.00 4.24
1803 1882 1.301677 CCGCCTTCCACTTCTTCAGC 61.302 60.000 0.00 0.00 0.00 4.26
1804 1883 1.301677 GCCGCCTTCCACTTCTTCAG 61.302 60.000 0.00 0.00 0.00 3.02
1805 1884 1.302511 GCCGCCTTCCACTTCTTCA 60.303 57.895 0.00 0.00 0.00 3.02
1806 1885 2.391389 CGCCGCCTTCCACTTCTTC 61.391 63.158 0.00 0.00 0.00 2.87
1807 1886 1.823169 TACGCCGCCTTCCACTTCTT 61.823 55.000 0.00 0.00 0.00 2.52
1808 1887 2.227089 CTACGCCGCCTTCCACTTCT 62.227 60.000 0.00 0.00 0.00 2.85
1809 1888 1.810030 CTACGCCGCCTTCCACTTC 60.810 63.158 0.00 0.00 0.00 3.01
1810 1889 2.227089 CTCTACGCCGCCTTCCACTT 62.227 60.000 0.00 0.00 0.00 3.16
1811 1890 2.678934 TCTACGCCGCCTTCCACT 60.679 61.111 0.00 0.00 0.00 4.00
1812 1891 2.202756 CTCTACGCCGCCTTCCAC 60.203 66.667 0.00 0.00 0.00 4.02
1813 1892 3.458163 CCTCTACGCCGCCTTCCA 61.458 66.667 0.00 0.00 0.00 3.53
1814 1893 2.630592 CTTCCTCTACGCCGCCTTCC 62.631 65.000 0.00 0.00 0.00 3.46
1864 1946 0.037605 GGTGGTGGAGGTCGTACTTG 60.038 60.000 0.00 0.00 0.00 3.16
1904 1986 0.742635 GTGCTCTGCTACTTCCAGCC 60.743 60.000 0.00 0.00 41.04 4.85
1947 2029 3.499737 CGTTGGTGATCCTGGCGC 61.500 66.667 0.00 0.00 34.23 6.53
1948 2030 3.499737 GCGTTGGTGATCCTGGCG 61.500 66.667 0.00 0.00 34.23 5.69
1949 2031 3.134127 GGCGTTGGTGATCCTGGC 61.134 66.667 0.00 0.00 34.23 4.85
1950 2032 1.746615 CTGGCGTTGGTGATCCTGG 60.747 63.158 0.00 0.00 34.23 4.45
1951 2033 2.401766 GCTGGCGTTGGTGATCCTG 61.402 63.158 0.00 0.00 34.23 3.86
1960 2042 2.979676 TTCCTGCTGCTGGCGTTG 60.980 61.111 19.55 0.00 45.43 4.10
1969 2051 0.036010 ACATCTTCGGGTTCCTGCTG 60.036 55.000 0.00 0.00 0.00 4.41
1971 2053 1.207329 ACTACATCTTCGGGTTCCTGC 59.793 52.381 0.00 0.00 0.00 4.85
1972 2054 3.952323 TCTACTACATCTTCGGGTTCCTG 59.048 47.826 0.00 0.00 0.00 3.86
2004 2086 0.898320 CTTCATCACCTCCGTCTGGT 59.102 55.000 0.00 0.00 38.53 4.00
2010 2092 1.519455 GCGGTCTTCATCACCTCCG 60.519 63.158 0.00 0.00 40.72 4.63
2011 2093 1.519455 CGCGGTCTTCATCACCTCC 60.519 63.158 0.00 0.00 0.00 4.30
2061 2161 2.889606 TACATGCACCCGGCTGTGT 61.890 57.895 11.79 5.64 45.15 3.72
2062 2162 2.046411 TACATGCACCCGGCTGTG 60.046 61.111 6.49 6.49 45.15 3.66
2064 2164 2.824041 GGTACATGCACCCGGCTG 60.824 66.667 3.42 0.00 45.15 4.85
2065 2165 3.326578 TGGTACATGCACCCGGCT 61.327 61.111 12.75 0.00 45.15 5.52
2066 2166 3.131478 GTGGTACATGCACCCGGC 61.131 66.667 12.75 0.00 44.52 6.13
2067 2167 2.817834 CGTGGTACATGCACCCGG 60.818 66.667 12.75 0.00 44.52 5.73
2073 2173 2.436646 AGCAGCCGTGGTACATGC 60.437 61.111 0.00 0.00 45.46 4.06
2099 2199 3.202706 GAACAAGATCCCGCGGCC 61.203 66.667 22.85 11.18 0.00 6.13
2101 2201 2.125673 ACGAACAAGATCCCGCGG 60.126 61.111 21.04 21.04 0.00 6.46
2137 2237 4.082523 TTCAAGAGGAGGCCCGCG 62.083 66.667 0.00 0.00 37.33 6.46
2144 2244 1.674221 CCACGGCTTCTTCAAGAGGAG 60.674 57.143 0.00 0.00 33.71 3.69
2147 2247 2.611518 CTACCACGGCTTCTTCAAGAG 58.388 52.381 0.00 0.00 0.00 2.85
2149 2249 1.079503 GCTACCACGGCTTCTTCAAG 58.920 55.000 0.00 0.00 0.00 3.02
2150 2250 0.685097 AGCTACCACGGCTTCTTCAA 59.315 50.000 0.00 0.00 36.56 2.69
2151 2251 0.246635 GAGCTACCACGGCTTCTTCA 59.753 55.000 0.00 0.00 40.40 3.02
2152 2252 0.460459 GGAGCTACCACGGCTTCTTC 60.460 60.000 0.00 0.00 40.40 2.87
2153 2253 1.597461 GGAGCTACCACGGCTTCTT 59.403 57.895 0.00 0.00 40.40 2.52
2154 2254 2.359967 GGGAGCTACCACGGCTTCT 61.360 63.158 11.24 0.00 40.40 2.85
2162 2262 1.534476 TGTTCGTGGGGAGCTACCA 60.534 57.895 19.26 11.77 41.20 3.25
2173 2273 4.012895 GTGCCGCTGGTGTTCGTG 62.013 66.667 0.00 0.00 0.00 4.35
2176 2276 4.980805 TCGGTGCCGCTGGTGTTC 62.981 66.667 5.64 0.00 39.59 3.18
2191 2291 1.880340 GCTCTGGTTCGGCATCTCG 60.880 63.158 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.