>input_sequence_86522
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-----------------------------------------------------------------ATGTGGCCGGAGATG
AAGGCGTGGGCGTCCATGGCCGACGACCCGCTGAAGCGCGCCTCGTCGTCGGCGACGAGCCCGTCCAGCCCCATGCGCCG
CTTCAGCCCCACCACGATGGCCGTCGGCGGCCTCCTCGCCGTCGGCACCGTCGGCTACTTCATGTTCATGGGCAAGGACG
ACAGGCAGCGCGAGCGCGACAGGCACAACGAGCGCCTGGCTCAGCGCCCCTGA---------------------------
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>chr7D_1_TraesCS7D01G494600
GCGCTTTCATCTTCTGCTTCTTCGTCTGGTTCTTCAAGTACAAGAGACTGATGCCCCTGTAGATATAAGCTCCCCTCATT
ATGCGGACTCAACCTTCTGTTCTCTGTTAAGGTACTTGATCAGAAAGCACTGAATCCATGTAAATCAACATTCTTTCAGG
GGCTTGCCATGTACCTACTACAAAATCAAATGAAAACAAATT-TTTTTCCTTACTCTGATGTAAATGGGTTATCATAGAA
ATAGTTCTCAAGTCTTAACCTTCCATCCTTCCAAATATTTCGCCTATTAATAAAA-CAGGTATTTGGTGGGGTGGTTATA
GATATAAAATTCTTGTATGAACATAATTTTAGGACTCCGCTACAAATGACAAATCTGACTTTAGATTTTTTTATCATGGC
AAATCAAAC----TTTTTCTATGGCAATTTGTGTTTGCCGAGGAAATCAAGTTGAGTTTGCAAGCATGGCAAATCCGTCT
TGGTTCATTTATTTTGTGTGGAAATTGCCGTGCTCGCCAACCGAATTTGCCATCCTCACCCCAATAAAAT-TGCCGTAAA
AAATGTTCCATTTGCCATGCTTAAAAATCAGATGTCAGA-TTTTAGCATTACCGTAATTTTAACAGAGTATGCT------
---TAGGGCTTTCGTCTAACTCCATATGAGAAAACTGTTTTTACTACTCGTAGTAGCTTATGTAATTTGTGCTACGGTCG
TTCGTCGGTATGTAAGCTCT--TAGTTCATTCCCGAGACAGACGAAGTACT-CCAGATGTAGGGTATGCTGACGCTGAGT
CACCAGGTGAAGGGTATGCTGGCGCTGCGTCCCACTACGTGGCAGTGACACCGCGCCACGCGTCCTCACATGCATCCCAG
TGGCCGCTTAACGTGCTCACTTAAGGCCCCTCTCGTCCTTGTCCGAGGGCTCATCT----CAGCAGTGGCAAACCAGTAA
ACAAGAAAGCTTGGGCGTAGCTCGCAACTAGGCAGCGAGAAGAGGA-GAGCATCGTCCGTTCACCATGTGGCCGGAGATG
AAGGCGTGGGCGTCCATGGCCGACGACCCGCTGAAGCGCGCCTCGTCGTCGGCGACGAGCCCGTCCAGCCCCATGCGCCG
CTTCAGCCCCACCACGATGGCCGTCGGCGGCCTCCTCGCCGTCGGCACCGTCGGCTACTTCATGTTCATGGGCAAGGACG
ACAGGCAGCGCGAGCGCGACAGGCACAACGAGCGCCTGGCTCAGCGCCCCTGAGAAGCTG---CCATCGTCGCCGCCCCT
CGCCTGAGGGAGGCGAACGCCGTCTAGCTTAGCATACTAGCCGCCGCCGCGTAATAGTAATAAAATCCTCCCCCTT----
-----------------CCGTGTGCTCTGTTGTTTATGTACTCTTTTATCAGTGAAACATGCATAGATTTCGCTGAGCAG
ATATGGTCTCCTCTGTA------CTGAAGATGGTTAATCCTCTGAACTTTAGTACCGCACGAATTCAGAGAGCTGTATGT
AGTTTGCTGTAAGGACACACACATACACCCAGCCACTGACATATCAGAAGTTCACCCAGTTCCCGGTCATAACTGAAAAC
ATCATACTGTAGGATCTCCCAAGATAACGCCTGAAGAAGCAGAGCCTACTTGCCTGCCACTAACTACTCTG---------
--------------ATGATCTTGTCGACCTCGAGGGAGGAGGAGTAGATGAGGTTGGTGAACCAGAAGCAGGCGTAGAAG
CCGATGGTGATCGCCGGTGAGGACGAAGAAGGCGTAGGAGGCGATGAGCATGTACCCGAAGTAGAGCGCGCCGGAGACCA
CCTTGGTGACTGATGTCCAGCTTGGTGAAGAAGTGGAAGTAGCTGAAGAAGTGGAAGGCGGCGTAGAGGAAGAGGTAGAG
CGCCGACGAGCCGGCC---GTCAGGCAAGTACGACCTCCACCACCACCGGTAGTCCTCGCTGCAGGGCTGGAAGTAGCAG
AGCACCACTGCGATCTCCACGCAGGTCAGCGCCAGGATCACCAACGCCAGCAGCAGGAACCCGAAGATGTAGTAGAACTG
GTGCAACCAGACGGAGGT------------------GATGAAGACCGCGCCGAACGGGAGCACGCCGCCGATCAGCACCG
ACACAGCCGGGTGCATGTACCACGGCTGCTCCGGGATCGGCCGCGGGATCTTGTTCGTCCGCACCGGGTCCTCCGCCGCG
GGCCTCCTCTTGAAGAAGCCGTGGTAGCTCCCCACGAACACCAGCGGCACCGAGATGCCGAACCAGAGCAGCACCAGTGC
CGACATG
>chr7B_1
GCGCTTTCGTCTTCTGCTTCTTCGTCTGGTTCTTCAAGTACAAGAGACTGATGCCCCTGTAGATATAAGCTCCCGTCATT
ATGCGGACTCAACCTTCTATTCTCTGTTAAGGTACTTGACCAAAAAGACCTGAATCCATGTAAATCAACATTTTTTCAGG
GGCTTGCCGTGTACCTACTACAAAATCAAATGAAAACATATAATTTTTCCTTACTCTTCTGTAAATGGGTTATTATAGAA
ATAGTTCTCAAGTCTTAACCATCCATCCTTCCAAATATTTTGCCTATTAATAAAAACAGGTATTTGTTGGGGTGGTTATA
GATATAAAATTCTTGTATGTACATGGTTTTAGGACTCCACT-------ACAAATCTGACTTTAGATTTTTT-ATCATGGC
AATAAATCAAATGTTTTTCTATGGCAATTTGTGTTTGCCGAGGAAATCAAGTCCAGTTTGCAAGCATGGCAAATCCGTCT
TGGTTCATTTATTTTGTGTGGAAATTGCCGTGCTCGCCAACTGAATTTGCCATCCTCACCCCAATTAAATTTGCCGTAAA
AAATGTTCCATTTGCCATGCTTAAAAATCAGGTGTCAGATTTTTAGCATTACCGTAATTTTAACAGAGTATGCTGGGTAT
ATATAGGGCTTTCTTCTAATTCCATATGAGAAAACTGTTTTTACTACTCGTAGTAGCTTATGTAATTTGTGCTACGGTCG
TTCGTCGGTATGTAAGCTCTACTAGTTCATTCCCGAGACAAAAGAAGTACTACCAGATGTAGGGTATGCTGACGCTGAGT
CACCAGCTGGAGGGTATGCTGGCGCTGCGTCCCACTACGTGGCAGTGACACCGCGCCACGCGTCCTGCCATGCATTCCAG
TGGCCGCTTAACATGCCCACTTAAGGCCCCTCTCGTCCTTCTCCGAGGGCTCATCT----CAGCAGTGGCAAAC------
--AAGAAAGCTTGGCCGGAGTTTGCAGCTTGGCAGCGAGAAGAGGAGGAGCATCGTCCGTCCACCATGTGGCCGGAGATG
AAGGCGTGGGCCTCCATGGCCGACGACCCGCTGAAGCGCGCGTCGTCGTCGGCGACGAGCCCGTCCAGCCCCATGCGCCG
CTTCAGCCCCACCACGATGGCCGTCGGCGGCCTCCTCACCGTCGGCACCGTCGGCTACTTCATGTTCATGGGCAAGGACG
ACAGGCAGCGCGAGCGCGACAGGCACAACGAGCGCCTGGCTCAGCGCACCTGAGAAGCCG---CCATCGTCGCCGCCCTC
CT-CTGAGGGAGGCGAACGCCGTCTAGCTTAGCGTACTAGCCGCTGCCGCGTAATAGTAATAAAATCCAACCCCCTTCCG
TGTACGGTGTATAAATCGCGTGTGTTCTGTTGTTTATGTACTCTTTTATCAGTGGAACATGCATAGATTTCACTGAGCAT
ACATAGTCTTCTTTTATCTGTTGCTGAACATGGTTAATTCTCTGAA----------------------------------
-------------------------------------------------GTTCACCCGT---------------------
--------------TCGCCTAAGATGACGCCTGAATTAGCAGAGCTACTCTTTTGATCTCAAAACCAACCACGCCATGGC
ATGCTAGTTAACAAATTGTCTAGTCGATCTTGAG---GGAGGAGTAGATGAGCCTTGTGAAGTAGAGGCAGGTGTAGA--
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-------------------------------------------------------AGGCGGCGTAGAGTTAGAGGTAGAG
CGCCGAGGAGCCGGCTGTTGTCAGGTAAGTACGACCTCCACCACCACCGGTAGTCCTCGCCGCAGAGCTGGAAGTAGCAG
AGCACCACGGCGATCTCCGCGCAGGTCA----------------------------------------------------
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>chr7A_762
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-------------------------------------------------------------GGGTATGCCGACGCTGAGT
CAGCAGCTGGAGGGTACGCTGGCGCGGCGTCCCACTACGTGGCAGTGACATCGCGCCACGCGTCCTCCCATGCGTTCCAG
TGGCCGCTTAACATGCCCACTTAAGGC-CCTCTCGTCCTTCTCCGAGGGCACATCTCTCTCAGCAGTGGCAAACCAGTAA
ACAAGAAAGCTTGGGCGTAGGTCGCAGATAGGCAGCGAGAAGAGGA-GAGCAT----CGTCCACCATGTGGCCGGAGATG
AAGGCGTGGGCCTCCATGGCCGACGACCCGCTGAAGCGCGCCTCGTCGTCGGCGACGAGCCCGTCCAGCCCCATGCGCCG
CTTCAGCCCCACCACGATGGCCGTCGGCGGCCTCCTCGCCGTCGGCACCGTCGGCTACTTCATGTTCATGGGCAAGGACG
ACAGGCAGCGCGAGCGCGACAGGCACAACGAGCGCCTGGCTCACCGCACCTGAGAAGCTGTTGCCGTCGCCGGAGTCCTT
CGCCGTAGCTTACCAGTAACCAC--------------------------CGCATGACAAATAAGATCCCCCCCTTCTGGG
TGTT-GGTGTACAAATCCCGTGTGCTCTGCTTCTC-TGTACTCTTTTATCAGTGGAACATGCATAGATTTCACTGAGCAT
GTATGGTCTCTTCTGCA------CTGAACATGGTTAATCCTCTGAACTTTAGCACCGCACGAATTCAGAGAGCTGTGTGT
AGTTTACTGTAAGGATACACGCGTACACT------------TATCAGAAGTTCACCCAT---------------------
--------------TCGCCTAAGATAACGCCTGAAGAAGCAGAG------------------------------------
---CTAGTTAAGAAGTTGTCTAGTCGATCTCGAG---GGAGGAGTAGATGAGGCTGGTGAAGCAGAAGCAGGCGTAGAAG
CCGACGGT----GCCGGTGAGGGTGAAGAAGGCGTACGAGGCGACGAGCATGTAGCCAAAGTAGAGCGCGCCGGAGACCA
CCTTGGTG----GTGTCCAGCTTGGCGAAGAAGTA------------------GAAGGCGGCGCAGAGGAAGAGGTAGAG
CGCCGACGAGCCGGCC---GTCAGGTAAGTACGACCTCCACAACCACCGGTAGTCCTCGCCGCAGAGCTGGAAGTAGCGG
AGCACCAC------------------------------------------------------------------------
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>chr5D_1640
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-------------------------------------GGACGAGTAGATCATCCTCGTGAACCAGAAGCAGGCGCAGAAG
CCAATGGT----TCCGGTGAGCACAAAGAAGGAGAAGGAGGCGAGCAGCATGTACCCGAAGTAGAGGATGCCCGACACCA
GCTTGCTG----ATCTGCAGCTTGGTCCAGAAGTA------------------GAACCCAGCGTACAGGAAGAGGTACAG
CGCCGACGACCCCGAGGTGAG-------GTACGACCTCCACCACCAGTTGTAGTCTTCGCTGCACAGCTGGAAGTAGCAG
AGCACGATTGTGATCTCCGCGCACGTGATGATGAGGATCACAAACACCAGGAAGAGGAACCCGAAGATGTAGTAGAACTG
GTGCAGCCAGATCGAGGTGAGGATGAAGAAGAGCTCGATGAAGACCGCGCCGAACGGCAGGATGCCGCCGATCAGGATGG
TGAAGAGCGGGTTCATGTACCAGGCTTGCTCAGGGATCTGACGCGGGATCTTGTTGGTCTTCACTGGAGGCTCCATGGCG
GGCTTCTT------GAACCCGAGGTAGCTCCCAACAAACACGAGGGGCACTGAGATGCCGAACCAGAGGAGGACCAGGGC
AAACATG
>chr5A_1640
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-------------------------------------GGACGAGTAGATCATCCTTGTGAACCAGAAGCAGGCGCAGAAG
CCGATGGT----TCCGGTGAGCACAAAGAAGGAGAAGGAGGCGAGCAGCATGTACCCGAAGTAGAGGATGCCCGACACCA
GCTTGCTG----ATCTGCAGCTTGGTCCAGAAGTA------------------GAACCCAGCATACAGGAAGAGGTACAG
CGCCGACGACCCTGAGGTGAG-------GTATGACCTCCACCACCAGTTGTAGTCCTCGCTGCACAGCTGGAAGTAGCAG
AGCACAATGGTGATCTCTGCGCACGTGATGATGAGGATCACAAACACCAGGAAGAGGAACCCGAAGATGTAGTAGAACTG
GTGCAGCCAGATCGAGGTGAGGATGAAGAAGAGCTCGATGAAGACCGCGCCAAACGGCAGGATGCCGCCGATCAGGATGG
TGAAGAGCGGGTTCATGTACCAGGCTTGCTCGGGGATCTGACGCGGGATCTTGTTGGTCTTCACTGGAGGCTCCATGGCG
GGCTTCTT------GAACCCGAGGTAGCTCCCAACAAACACGAGGGGCACTGAGATGCCGAACCAGAGGAGGACCAGGGC
AAACATG
>SNPs
--------S-----------------------------------------------------------------S-----
------------------S--------------------S--S----SS-----------------------S-------
--------S-----------------------------S--S---------------SS--------------S------
--------------------S-------------------S-------------------------S-------------
-------------------S----SS------------S--SSSSSSS-----------------------S--------
--SSS-SSS-------------------------------------------SS--------------------------
-----------------------------------------S-----------------------S--------------
-------------------------------S------------------------------------------------
-------------S-----S------------------------------------------------------------
----------------------------------------S-S-------------------------------------
------S--S---------------------------------------------------------S-------S----
------------S---S-----------------------S---------------------------------------
--------------------S-----S---------------------------------S-------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S------------------------------S-
---------------------------------S----------S-----------------------S-----------
------------------------------------------------------S----------------S-------S
---------------S------------S-----------------------S-----------------------S---
-----S---------S----S-S-----SSSSSSSSSSSSS-----------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--S--S-------------------------SSSSS-SSSSSS-S-S--SSSSS-SS---------
----------------SS---S-----S------SSS----------------S--------------------------
--------SSSS--------------------------------S-----------------------------------
--------SSSS----------------------SSSSSSSSSSSSSSSSSSS---------------------------
-------------------------S---------------------------------------S--------------
------------------S---------SSSSS--------S---S----S-SS--------------------------
-----S-----SS--------------------------------------------S--S-S------------S-SS-
SS-SSSS-----S---------S-SS-----S------S-S--------------S---SS---S--SSS----SSS---
---S--S-SSSSSS---S---S----------S--S-----S--S-----S-----------------S--S-----S--
SS-----
>forward_169
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---------------------------------------------------------------------ATTCTTTCAGG
GGCTTGCCA-----------------------------------------------------------------------
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>reverse_1698
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-----------------ATCTTGTCGACCTCGAGGGA-------------------------------------------
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