Multiple sequence alignment - TraesCS7D01G473100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G473100 chr7D 100.000 2669 0 0 1 2669 586400137 586397469 0.000000e+00 4929.0
1 TraesCS7D01G473100 chr7D 96.173 810 14 6 1 803 601965651 601964852 0.000000e+00 1308.0
2 TraesCS7D01G473100 chr7D 94.417 806 25 6 1 799 474866676 474867468 0.000000e+00 1221.0
3 TraesCS7D01G473100 chr7D 98.225 169 3 0 2501 2669 244320375 244320207 2.010000e-76 296.0
4 TraesCS7D01G473100 chr7D 97.674 172 3 1 2498 2669 59831177 59831347 7.230000e-76 294.0
5 TraesCS7D01G473100 chr7D 86.175 217 21 4 817 1030 586408626 586408416 2.670000e-55 226.0
6 TraesCS7D01G473100 chr7D 83.756 197 30 2 1748 1942 378313872 378313676 4.540000e-43 185.0
7 TraesCS7D01G473100 chr7D 92.000 50 3 1 1750 1799 19191204 19191252 4.770000e-08 69.4
8 TraesCS7D01G473100 chr7B 94.935 928 45 2 822 1747 656456392 656455465 0.000000e+00 1452.0
9 TraesCS7D01G473100 chr7B 90.099 909 57 9 810 1709 655133647 655134531 0.000000e+00 1149.0
10 TraesCS7D01G473100 chr7B 90.316 475 42 3 1739 2211 656455431 656454959 1.050000e-173 619.0
11 TraesCS7D01G473100 chr7B 90.000 300 30 0 2204 2503 362546480 362546181 3.220000e-104 388.0
12 TraesCS7D01G473100 chr7B 83.448 145 22 1 1748 1890 373067504 373067360 1.670000e-27 134.0
13 TraesCS7D01G473100 chr7A 92.992 742 43 6 892 1630 677692876 677692141 0.000000e+00 1074.0
14 TraesCS7D01G473100 chr7A 89.643 280 26 3 208 484 690244745 690245024 1.180000e-93 353.0
15 TraesCS7D01G473100 chr7A 88.380 284 30 3 208 488 483230901 483230618 3.290000e-89 339.0
16 TraesCS7D01G473100 chr7A 87.857 280 31 3 208 484 684477005 684477284 2.560000e-85 326.0
17 TraesCS7D01G473100 chr7A 92.742 124 9 0 1620 1743 677692122 677691999 2.110000e-41 180.0
18 TraesCS7D01G473100 chr7A 82.323 198 30 4 1748 1942 426565168 426564973 1.640000e-37 167.0
19 TraesCS7D01G473100 chr7A 90.598 117 11 0 1 117 684476862 684476978 3.560000e-34 156.0
20 TraesCS7D01G473100 chr7A 82.000 150 17 5 660 809 38152436 38152297 4.670000e-23 119.0
21 TraesCS7D01G473100 chr7A 79.870 154 19 7 660 813 38152016 38151875 4.700000e-18 102.0
22 TraesCS7D01G473100 chr7A 100.000 46 0 0 813 858 677692920 677692875 4.730000e-13 86.1
23 TraesCS7D01G473100 chr2D 92.440 291 22 0 2208 2498 374111890 374112180 1.480000e-112 416.0
24 TraesCS7D01G473100 chr2D 86.538 52 7 0 1748 1799 65661800 65661851 1.030000e-04 58.4
25 TraesCS7D01G473100 chr1D 91.525 295 25 0 2204 2498 14476646 14476352 8.900000e-110 407.0
26 TraesCS7D01G473100 chr1D 97.633 169 3 1 2501 2669 338360766 338360599 3.360000e-74 289.0
27 TraesCS7D01G473100 chr5B 91.246 297 26 0 2202 2498 635361924 635362220 3.200000e-109 405.0
28 TraesCS7D01G473100 chr5B 90.196 306 30 0 2198 2503 618251829 618251524 1.490000e-107 399.0
29 TraesCS7D01G473100 chr5D 90.572 297 28 0 2204 2500 453972442 453972738 6.930000e-106 394.0
30 TraesCS7D01G473100 chr5D 97.633 169 4 0 2501 2669 320351880 320351712 9.350000e-75 291.0
31 TraesCS7D01G473100 chr5D 96.552 174 5 1 2490 2663 87923590 87923762 1.210000e-73 287.0
32 TraesCS7D01G473100 chr1B 90.541 296 28 0 2203 2498 517918705 517919000 2.490000e-105 392.0
33 TraesCS7D01G473100 chr4D 89.735 302 29 2 2202 2503 17247988 17247689 4.170000e-103 385.0
34 TraesCS7D01G473100 chr4D 97.633 169 4 0 2501 2669 274123441 274123273 9.350000e-75 291.0
35 TraesCS7D01G473100 chr3D 89.735 302 30 1 2202 2503 113467979 113467679 4.170000e-103 385.0
36 TraesCS7D01G473100 chr3D 97.633 169 3 1 2501 2669 363115821 363115654 3.360000e-74 289.0
37 TraesCS7D01G473100 chr3D 89.744 117 12 0 1 117 534442501 534442385 1.660000e-32 150.0
38 TraesCS7D01G473100 chr6A 97.093 172 5 0 2498 2669 594850224 594850395 9.350000e-75 291.0
39 TraesCS7D01G473100 chr6A 81.169 154 26 3 316 466 13446087 13446240 1.300000e-23 121.0
40 TraesCS7D01G473100 chr4B 97.633 169 4 0 2501 2669 401663427 401663259 9.350000e-75 291.0
41 TraesCS7D01G473100 chr1A 90.625 64 5 1 1744 1806 299649135 299649072 1.700000e-12 84.2
42 TraesCS7D01G473100 chr3A 97.778 45 1 0 1755 1799 466051104 466051148 7.920000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G473100 chr7D 586397469 586400137 2668 True 4929.0 4929 100.000000 1 2669 1 chr7D.!!$R3 2668
1 TraesCS7D01G473100 chr7D 601964852 601965651 799 True 1308.0 1308 96.173000 1 803 1 chr7D.!!$R5 802
2 TraesCS7D01G473100 chr7D 474866676 474867468 792 False 1221.0 1221 94.417000 1 799 1 chr7D.!!$F3 798
3 TraesCS7D01G473100 chr7B 655133647 655134531 884 False 1149.0 1149 90.099000 810 1709 1 chr7B.!!$F1 899
4 TraesCS7D01G473100 chr7B 656454959 656456392 1433 True 1035.5 1452 92.625500 822 2211 2 chr7B.!!$R3 1389
5 TraesCS7D01G473100 chr7A 677691999 677692920 921 True 446.7 1074 95.244667 813 1743 3 chr7A.!!$R4 930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 1017 3.084039 TGAAGGATTGAAGGACACATGC 58.916 45.455 0.0 0.0 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 2371 0.03759 TGACGCATTAGGGCCTGTTT 59.962 50.0 18.53 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
667 676 3.684788 GCAAGGATTATATGCTACACCGG 59.315 47.826 0.00 0.00 37.12 5.28
705 714 6.427547 CCATTAGATTAACGGCCGGTAATTTA 59.572 38.462 40.56 35.83 38.04 1.40
745 754 9.547279 AATTTCTGGGAAGTCCAAAATTAGTAT 57.453 29.630 12.17 0.00 46.51 2.12
747 756 9.681062 TTTCTGGGAAGTCCAAAATTAGTATAG 57.319 33.333 0.00 0.00 46.51 1.31
748 757 7.802117 TCTGGGAAGTCCAAAATTAGTATAGG 58.198 38.462 0.00 0.00 46.51 2.57
749 758 7.404980 TCTGGGAAGTCCAAAATTAGTATAGGT 59.595 37.037 0.00 0.00 46.51 3.08
750 759 8.626917 TGGGAAGTCCAAAATTAGTATAGGTA 57.373 34.615 0.00 0.00 43.84 3.08
751 760 8.711170 TGGGAAGTCCAAAATTAGTATAGGTAG 58.289 37.037 0.00 0.00 43.84 3.18
752 761 8.155510 GGGAAGTCCAAAATTAGTATAGGTAGG 58.844 40.741 0.00 0.00 37.91 3.18
996 1016 5.710513 TTTGAAGGATTGAAGGACACATG 57.289 39.130 0.00 0.00 0.00 3.21
997 1017 3.084039 TGAAGGATTGAAGGACACATGC 58.916 45.455 0.00 0.00 0.00 4.06
998 1018 3.245016 TGAAGGATTGAAGGACACATGCT 60.245 43.478 0.00 0.00 0.00 3.79
1033 1053 7.389232 AGTGCAATATTTATCATCCTCGATCA 58.611 34.615 0.00 0.00 0.00 2.92
1038 1058 8.992073 CAATATTTATCATCCTCGATCACACAA 58.008 33.333 0.00 0.00 0.00 3.33
1150 1175 4.692475 GGCGTGCCCTACAACGGT 62.692 66.667 0.00 0.00 0.00 4.83
1383 1408 0.037605 CAGGAAAGGGCGTTCTACGT 60.038 55.000 0.00 0.00 44.73 3.57
1387 1412 2.386064 AAAGGGCGTTCTACGTGGCA 62.386 55.000 0.00 0.00 44.73 4.92
1393 1418 1.019278 CGTTCTACGTGGCATGCCTT 61.019 55.000 35.53 22.18 36.74 4.35
1395 1420 2.352388 GTTCTACGTGGCATGCCTTAA 58.648 47.619 35.53 15.05 36.94 1.85
1523 1548 2.103094 CTGAATAGTTGCAGGGATCGGA 59.897 50.000 0.00 0.00 0.00 4.55
1656 1710 1.822371 TCTAGCGGCAACATGTAGACA 59.178 47.619 0.00 0.00 0.00 3.41
1769 1865 2.779506 ACTCATCCAAAAGTCCGAACC 58.220 47.619 0.00 0.00 0.00 3.62
1776 1872 1.732259 CAAAAGTCCGAACCGATGGAG 59.268 52.381 0.00 0.00 34.21 3.86
1778 1874 0.818296 AAGTCCGAACCGATGGAGAG 59.182 55.000 0.00 0.00 34.21 3.20
1781 1877 1.103803 TCCGAACCGATGGAGAGAAG 58.896 55.000 0.00 0.00 0.00 2.85
1799 1895 6.006449 AGAGAAGCGGGCAATATATTTCAAT 58.994 36.000 0.00 0.00 0.00 2.57
1802 1898 5.897377 AGCGGGCAATATATTTCAATACC 57.103 39.130 0.00 0.00 0.00 2.73
1829 1925 3.064545 TCGCGTCTAGGCTTACTTAGTTC 59.935 47.826 5.77 0.00 0.00 3.01
1835 1931 7.255208 GCGTCTAGGCTTACTTAGTTCTTAGAT 60.255 40.741 0.00 0.00 0.00 1.98
1857 1953 5.039920 TGTGAGATTTATGTAGGCTGCAT 57.960 39.130 21.67 21.67 0.00 3.96
1898 1995 2.260844 TGGCAAGGTCTTGAACTCAG 57.739 50.000 14.20 0.00 42.93 3.35
1912 2009 2.363018 TCAGGACCTCCAGGCTCG 60.363 66.667 0.00 0.00 39.32 5.03
1932 2029 8.768397 AGGCTCGGGTATAATATTGAATTCATA 58.232 33.333 9.40 4.69 0.00 2.15
1934 2031 8.540492 GCTCGGGTATAATATTGAATTCATACG 58.460 37.037 9.40 0.00 0.00 3.06
1935 2032 8.415192 TCGGGTATAATATTGAATTCATACGC 57.585 34.615 9.40 13.74 0.00 4.42
1940 2037 5.376854 AATATTGAATTCATACGCCAGCC 57.623 39.130 9.40 0.00 0.00 4.85
1943 2040 1.742831 TGAATTCATACGCCAGCCAAC 59.257 47.619 3.38 0.00 0.00 3.77
1949 2046 0.833287 ATACGCCAGCCAACTCATCT 59.167 50.000 0.00 0.00 0.00 2.90
1954 2051 2.159517 CGCCAGCCAACTCATCTAAAAC 60.160 50.000 0.00 0.00 0.00 2.43
1957 2054 4.583871 CCAGCCAACTCATCTAAAACTCT 58.416 43.478 0.00 0.00 0.00 3.24
1958 2055 4.394300 CCAGCCAACTCATCTAAAACTCTG 59.606 45.833 0.00 0.00 0.00 3.35
1960 2057 5.121454 CAGCCAACTCATCTAAAACTCTGAC 59.879 44.000 0.00 0.00 0.00 3.51
1961 2058 4.092091 GCCAACTCATCTAAAACTCTGACG 59.908 45.833 0.00 0.00 0.00 4.35
1971 2068 6.382608 TCTAAAACTCTGACGTGATGAAGAG 58.617 40.000 0.00 0.00 41.59 2.85
1974 2071 2.752354 ACTCTGACGTGATGAAGAGAGG 59.248 50.000 13.39 0.00 38.77 3.69
1978 2075 0.965866 ACGTGATGAAGAGAGGCGGA 60.966 55.000 0.00 0.00 0.00 5.54
2003 2100 7.975606 CAATATGTTTCAACGAACATTTTGC 57.024 32.000 15.58 0.00 45.38 3.68
2027 2124 2.992089 AGTGTGACACTCTTTGCGG 58.008 52.632 13.33 0.00 41.21 5.69
2028 2125 1.160329 AGTGTGACACTCTTTGCGGC 61.160 55.000 13.33 0.00 41.21 6.53
2029 2126 1.146041 TGTGACACTCTTTGCGGCT 59.854 52.632 7.20 0.00 0.00 5.52
2120 2217 5.824624 TCAGTCCTATGATTTGAGGATTTGC 59.175 40.000 0.00 0.00 43.71 3.68
2128 2225 4.039488 TGATTTGAGGATTTGCAGCTTGTT 59.961 37.500 0.00 0.00 0.00 2.83
2131 2228 4.019792 TGAGGATTTGCAGCTTGTTCTA 57.980 40.909 0.00 0.00 0.00 2.10
2138 2235 1.864711 TGCAGCTTGTTCTAACACGAC 59.135 47.619 3.74 0.00 38.92 4.34
2142 2239 4.295870 CAGCTTGTTCTAACACGACAGTA 58.704 43.478 3.74 0.00 38.92 2.74
2175 2272 2.417243 GCAACGGGGAAATGGAAGAATG 60.417 50.000 0.00 0.00 0.00 2.67
2204 2301 4.815269 TGACCACAAAGAAACAACAAAGG 58.185 39.130 0.00 0.00 0.00 3.11
2208 2305 4.562552 CCACAAAGAAACAACAAAGGGTGT 60.563 41.667 0.00 0.00 44.64 4.16
2209 2306 4.388469 CACAAAGAAACAACAAAGGGTGTG 59.612 41.667 0.00 0.00 40.60 3.82
2210 2307 4.039852 ACAAAGAAACAACAAAGGGTGTGT 59.960 37.500 0.00 0.00 40.60 3.72
2212 2309 4.882842 AGAAACAACAAAGGGTGTGTTT 57.117 36.364 0.54 0.54 40.60 2.83
2213 2310 4.565022 AGAAACAACAAAGGGTGTGTTTG 58.435 39.130 5.43 0.00 40.60 2.93
2214 2311 3.326836 AACAACAAAGGGTGTGTTTGG 57.673 42.857 1.05 0.00 40.60 3.28
2215 2312 2.252714 ACAACAAAGGGTGTGTTTGGT 58.747 42.857 1.05 0.00 40.60 3.67
2216 2313 2.635427 ACAACAAAGGGTGTGTTTGGTT 59.365 40.909 1.05 0.00 40.60 3.67
2217 2314 3.071747 ACAACAAAGGGTGTGTTTGGTTT 59.928 39.130 1.05 0.00 40.60 3.27
2218 2315 4.068599 CAACAAAGGGTGTGTTTGGTTTT 58.931 39.130 1.05 0.00 40.60 2.43
2219 2316 5.221661 ACAACAAAGGGTGTGTTTGGTTTTA 60.222 36.000 1.05 0.00 40.60 1.52
2220 2317 5.079689 ACAAAGGGTGTGTTTGGTTTTAG 57.920 39.130 1.05 0.00 39.72 1.85
2221 2318 4.528987 ACAAAGGGTGTGTTTGGTTTTAGT 59.471 37.500 1.05 0.00 39.72 2.24
2222 2319 5.012251 ACAAAGGGTGTGTTTGGTTTTAGTT 59.988 36.000 1.05 0.00 39.72 2.24
2223 2320 4.729227 AGGGTGTGTTTGGTTTTAGTTG 57.271 40.909 0.00 0.00 0.00 3.16
2224 2321 4.090819 AGGGTGTGTTTGGTTTTAGTTGT 58.909 39.130 0.00 0.00 0.00 3.32
2225 2322 4.081917 AGGGTGTGTTTGGTTTTAGTTGTG 60.082 41.667 0.00 0.00 0.00 3.33
2226 2323 4.082136 GGGTGTGTTTGGTTTTAGTTGTGA 60.082 41.667 0.00 0.00 0.00 3.58
2227 2324 5.471257 GGTGTGTTTGGTTTTAGTTGTGAA 58.529 37.500 0.00 0.00 0.00 3.18
2228 2325 5.346551 GGTGTGTTTGGTTTTAGTTGTGAAC 59.653 40.000 0.00 0.00 0.00 3.18
2229 2326 5.921408 GTGTGTTTGGTTTTAGTTGTGAACA 59.079 36.000 0.00 0.00 0.00 3.18
2230 2327 6.088883 GTGTGTTTGGTTTTAGTTGTGAACAG 59.911 38.462 0.00 0.00 0.00 3.16
2231 2328 6.153756 GTGTTTGGTTTTAGTTGTGAACAGT 58.846 36.000 0.00 0.00 0.00 3.55
2232 2329 6.643360 GTGTTTGGTTTTAGTTGTGAACAGTT 59.357 34.615 0.00 0.00 0.00 3.16
2233 2330 7.170151 GTGTTTGGTTTTAGTTGTGAACAGTTT 59.830 33.333 0.00 0.00 0.00 2.66
2234 2331 7.382759 TGTTTGGTTTTAGTTGTGAACAGTTTC 59.617 33.333 0.00 0.00 0.00 2.78
2235 2332 6.827586 TGGTTTTAGTTGTGAACAGTTTCT 57.172 33.333 0.00 0.00 32.36 2.52
2236 2333 6.616947 TGGTTTTAGTTGTGAACAGTTTCTG 58.383 36.000 0.00 0.00 37.52 3.02
2237 2334 5.515270 GGTTTTAGTTGTGAACAGTTTCTGC 59.485 40.000 0.00 0.00 34.37 4.26
2238 2335 5.888691 TTTAGTTGTGAACAGTTTCTGCA 57.111 34.783 0.00 0.00 34.37 4.41
2239 2336 6.449635 TTTAGTTGTGAACAGTTTCTGCAT 57.550 33.333 0.00 0.00 34.37 3.96
2240 2337 4.989279 AGTTGTGAACAGTTTCTGCATT 57.011 36.364 0.00 0.00 34.37 3.56
2241 2338 4.675510 AGTTGTGAACAGTTTCTGCATTG 58.324 39.130 0.00 0.00 34.37 2.82
2242 2339 3.082698 TGTGAACAGTTTCTGCATTGC 57.917 42.857 0.46 0.46 34.37 3.56
2243 2340 2.426381 TGTGAACAGTTTCTGCATTGCA 59.574 40.909 11.50 11.50 34.37 4.08
2244 2341 3.068448 TGTGAACAGTTTCTGCATTGCAT 59.932 39.130 12.53 0.00 38.13 3.96
2245 2342 4.277921 TGTGAACAGTTTCTGCATTGCATA 59.722 37.500 12.53 1.58 38.13 3.14
2246 2343 4.618489 GTGAACAGTTTCTGCATTGCATAC 59.382 41.667 12.53 10.62 38.13 2.39
2247 2344 4.277921 TGAACAGTTTCTGCATTGCATACA 59.722 37.500 12.53 0.00 38.13 2.29
2248 2345 4.164822 ACAGTTTCTGCATTGCATACAC 57.835 40.909 12.53 8.42 38.13 2.90
2249 2346 3.822735 ACAGTTTCTGCATTGCATACACT 59.177 39.130 12.53 10.65 38.13 3.55
2250 2347 4.279169 ACAGTTTCTGCATTGCATACACTT 59.721 37.500 12.53 2.81 38.13 3.16
2251 2348 4.855388 CAGTTTCTGCATTGCATACACTTC 59.145 41.667 12.53 0.25 38.13 3.01
2252 2349 4.763793 AGTTTCTGCATTGCATACACTTCT 59.236 37.500 12.53 2.47 38.13 2.85
2253 2350 4.952262 TTCTGCATTGCATACACTTCTC 57.048 40.909 12.53 0.00 38.13 2.87
2254 2351 3.941573 TCTGCATTGCATACACTTCTCA 58.058 40.909 12.53 0.00 38.13 3.27
2255 2352 4.325972 TCTGCATTGCATACACTTCTCAA 58.674 39.130 12.53 0.00 38.13 3.02
2256 2353 4.154737 TCTGCATTGCATACACTTCTCAAC 59.845 41.667 12.53 0.00 38.13 3.18
2257 2354 3.191162 TGCATTGCATACACTTCTCAACC 59.809 43.478 7.38 0.00 31.71 3.77
2258 2355 3.428045 GCATTGCATACACTTCTCAACCC 60.428 47.826 3.15 0.00 0.00 4.11
2259 2356 3.500448 TTGCATACACTTCTCAACCCA 57.500 42.857 0.00 0.00 0.00 4.51
2260 2357 3.057969 TGCATACACTTCTCAACCCAG 57.942 47.619 0.00 0.00 0.00 4.45
2261 2358 1.740025 GCATACACTTCTCAACCCAGC 59.260 52.381 0.00 0.00 0.00 4.85
2262 2359 2.359900 CATACACTTCTCAACCCAGCC 58.640 52.381 0.00 0.00 0.00 4.85
2263 2360 1.729586 TACACTTCTCAACCCAGCCT 58.270 50.000 0.00 0.00 0.00 4.58
2264 2361 0.109342 ACACTTCTCAACCCAGCCTG 59.891 55.000 0.00 0.00 0.00 4.85
2265 2362 0.607489 CACTTCTCAACCCAGCCTGG 60.607 60.000 2.91 2.91 37.25 4.45
2266 2363 1.062488 ACTTCTCAACCCAGCCTGGT 61.062 55.000 10.47 0.00 41.55 4.00
2271 2368 2.116125 AACCCAGCCTGGTTGAGC 59.884 61.111 12.54 0.00 46.76 4.26
2272 2369 2.766925 AACCCAGCCTGGTTGAGCA 61.767 57.895 12.54 0.00 46.76 4.26
2273 2370 2.115910 CCCAGCCTGGTTGAGCAA 59.884 61.111 12.54 0.00 35.17 3.91
2274 2371 1.531365 CCCAGCCTGGTTGAGCAAA 60.531 57.895 12.54 0.00 35.17 3.68
2275 2372 1.114722 CCCAGCCTGGTTGAGCAAAA 61.115 55.000 12.54 0.00 35.17 2.44
2276 2373 0.752054 CCAGCCTGGTTGAGCAAAAA 59.248 50.000 12.54 0.00 31.35 1.94
2277 2374 1.538849 CCAGCCTGGTTGAGCAAAAAC 60.539 52.381 12.54 0.00 31.35 2.43
2278 2375 1.136695 CAGCCTGGTTGAGCAAAAACA 59.863 47.619 4.28 0.00 0.00 2.83
2279 2376 1.410153 AGCCTGGTTGAGCAAAAACAG 59.590 47.619 8.97 8.97 43.27 3.16
2281 2378 1.856802 CTGGTTGAGCAAAAACAGGC 58.143 50.000 8.23 0.00 40.53 4.85
2282 2379 0.463620 TGGTTGAGCAAAAACAGGCC 59.536 50.000 0.00 0.00 0.00 5.19
2283 2380 0.249868 GGTTGAGCAAAAACAGGCCC 60.250 55.000 0.00 0.00 0.00 5.80
2284 2381 0.752658 GTTGAGCAAAAACAGGCCCT 59.247 50.000 0.00 0.00 0.00 5.19
2285 2382 1.960689 GTTGAGCAAAAACAGGCCCTA 59.039 47.619 0.00 0.00 0.00 3.53
2286 2383 2.364002 GTTGAGCAAAAACAGGCCCTAA 59.636 45.455 0.00 0.00 0.00 2.69
2287 2384 2.888212 TGAGCAAAAACAGGCCCTAAT 58.112 42.857 0.00 0.00 0.00 1.73
2288 2385 2.562298 TGAGCAAAAACAGGCCCTAATG 59.438 45.455 0.00 0.00 0.00 1.90
2289 2386 1.276138 AGCAAAAACAGGCCCTAATGC 59.724 47.619 0.00 3.14 0.00 3.56
2290 2387 1.994916 CAAAAACAGGCCCTAATGCG 58.005 50.000 0.00 0.00 0.00 4.73
2291 2388 1.272212 CAAAAACAGGCCCTAATGCGT 59.728 47.619 0.00 0.00 0.00 5.24
2292 2389 1.173913 AAAACAGGCCCTAATGCGTC 58.826 50.000 0.00 0.00 0.00 5.19
2293 2390 0.037590 AAACAGGCCCTAATGCGTCA 59.962 50.000 0.00 0.00 0.00 4.35
2294 2391 0.255890 AACAGGCCCTAATGCGTCAT 59.744 50.000 0.00 0.00 0.00 3.06
2295 2392 0.179045 ACAGGCCCTAATGCGTCATC 60.179 55.000 0.00 0.00 0.00 2.92
2296 2393 0.107456 CAGGCCCTAATGCGTCATCT 59.893 55.000 0.00 0.00 0.00 2.90
2297 2394 1.344438 CAGGCCCTAATGCGTCATCTA 59.656 52.381 0.00 0.00 0.00 1.98
2298 2395 1.344763 AGGCCCTAATGCGTCATCTAC 59.655 52.381 0.00 0.00 0.00 2.59
2299 2396 1.070134 GGCCCTAATGCGTCATCTACA 59.930 52.381 0.00 0.00 0.00 2.74
2300 2397 2.484770 GGCCCTAATGCGTCATCTACAA 60.485 50.000 0.00 0.00 0.00 2.41
2301 2398 2.802816 GCCCTAATGCGTCATCTACAAG 59.197 50.000 0.00 0.00 0.00 3.16
2302 2399 3.741388 GCCCTAATGCGTCATCTACAAGT 60.741 47.826 0.00 0.00 0.00 3.16
2303 2400 4.442706 CCCTAATGCGTCATCTACAAGTT 58.557 43.478 0.00 0.00 0.00 2.66
2304 2401 4.271049 CCCTAATGCGTCATCTACAAGTTG 59.729 45.833 0.00 0.00 0.00 3.16
2305 2402 4.870426 CCTAATGCGTCATCTACAAGTTGT 59.130 41.667 14.05 14.05 0.00 3.32
2306 2403 5.351465 CCTAATGCGTCATCTACAAGTTGTT 59.649 40.000 14.90 0.00 0.00 2.83
2307 2404 5.689383 AATGCGTCATCTACAAGTTGTTT 57.311 34.783 14.90 0.00 0.00 2.83
2308 2405 4.466567 TGCGTCATCTACAAGTTGTTTG 57.533 40.909 14.90 9.95 42.68 2.93
2309 2406 3.249799 TGCGTCATCTACAAGTTGTTTGG 59.750 43.478 14.90 5.50 41.25 3.28
2310 2407 3.250040 GCGTCATCTACAAGTTGTTTGGT 59.750 43.478 14.90 1.15 41.25 3.67
2311 2408 4.261031 GCGTCATCTACAAGTTGTTTGGTT 60.261 41.667 14.90 0.00 41.25 3.67
2312 2409 5.204833 CGTCATCTACAAGTTGTTTGGTTG 58.795 41.667 14.90 10.03 41.25 3.77
2313 2410 4.976116 GTCATCTACAAGTTGTTTGGTTGC 59.024 41.667 14.90 0.00 41.25 4.17
2314 2411 4.887071 TCATCTACAAGTTGTTTGGTTGCT 59.113 37.500 14.90 0.00 41.25 3.91
2315 2412 5.359576 TCATCTACAAGTTGTTTGGTTGCTT 59.640 36.000 14.90 0.00 41.25 3.91
2316 2413 4.992688 TCTACAAGTTGTTTGGTTGCTTG 58.007 39.130 14.90 0.00 41.25 4.01
2317 2414 2.345876 ACAAGTTGTTTGGTTGCTTGC 58.654 42.857 1.64 0.00 41.25 4.01
2318 2415 2.289320 ACAAGTTGTTTGGTTGCTTGCA 60.289 40.909 1.64 0.00 41.25 4.08
2319 2416 2.937799 CAAGTTGTTTGGTTGCTTGCAT 59.062 40.909 0.00 0.00 32.95 3.96
2320 2417 2.825205 AGTTGTTTGGTTGCTTGCATC 58.175 42.857 0.00 0.00 0.00 3.91
2321 2418 2.168106 AGTTGTTTGGTTGCTTGCATCA 59.832 40.909 0.00 0.00 0.00 3.07
2322 2419 2.935201 GTTGTTTGGTTGCTTGCATCAA 59.065 40.909 0.00 2.36 0.00 2.57
2323 2420 2.823984 TGTTTGGTTGCTTGCATCAAG 58.176 42.857 0.00 2.40 43.57 3.02
2324 2421 2.137523 GTTTGGTTGCTTGCATCAAGG 58.862 47.619 8.43 0.00 41.31 3.61
2325 2422 0.680618 TTGGTTGCTTGCATCAAGGG 59.319 50.000 8.43 0.00 41.31 3.95
2326 2423 0.469705 TGGTTGCTTGCATCAAGGGT 60.470 50.000 8.43 0.00 41.31 4.34
2327 2424 0.244721 GGTTGCTTGCATCAAGGGTC 59.755 55.000 8.43 0.00 41.31 4.46
2328 2425 0.244721 GTTGCTTGCATCAAGGGTCC 59.755 55.000 8.43 0.00 41.31 4.46
2329 2426 0.899717 TTGCTTGCATCAAGGGTCCC 60.900 55.000 0.00 0.00 41.31 4.46
2330 2427 1.000396 GCTTGCATCAAGGGTCCCT 60.000 57.895 3.85 3.85 41.31 4.20
2331 2428 1.318158 GCTTGCATCAAGGGTCCCTG 61.318 60.000 12.53 6.10 41.31 4.45
2332 2429 1.304381 TTGCATCAAGGGTCCCTGC 60.304 57.895 12.53 12.24 32.13 4.85
2333 2430 2.079088 TTGCATCAAGGGTCCCTGCA 62.079 55.000 16.62 16.62 32.13 4.41
2334 2431 1.076485 GCATCAAGGGTCCCTGCAT 60.076 57.895 12.53 3.36 32.13 3.96
2335 2432 0.685458 GCATCAAGGGTCCCTGCATT 60.685 55.000 12.53 0.00 32.13 3.56
2336 2433 1.410083 GCATCAAGGGTCCCTGCATTA 60.410 52.381 12.53 0.00 32.13 1.90
2337 2434 2.579873 CATCAAGGGTCCCTGCATTAG 58.420 52.381 12.53 0.00 32.13 1.73
2338 2435 0.918983 TCAAGGGTCCCTGCATTAGG 59.081 55.000 12.53 0.00 46.88 2.69
2339 2436 0.625849 CAAGGGTCCCTGCATTAGGT 59.374 55.000 12.53 0.00 45.80 3.08
2340 2437 1.843851 CAAGGGTCCCTGCATTAGGTA 59.156 52.381 12.53 0.00 45.80 3.08
2341 2438 2.241176 CAAGGGTCCCTGCATTAGGTAA 59.759 50.000 12.53 0.00 45.80 2.85
2342 2439 2.789219 AGGGTCCCTGCATTAGGTAAT 58.211 47.619 10.61 0.00 45.80 1.89
2343 2440 2.443255 AGGGTCCCTGCATTAGGTAATG 59.557 50.000 10.61 5.50 45.80 1.90
2364 2461 2.958213 CACAAGTGCACTTTGTTTGGT 58.042 42.857 29.23 19.25 33.11 3.67
2365 2462 3.324993 CACAAGTGCACTTTGTTTGGTT 58.675 40.909 29.23 2.31 33.11 3.67
2366 2463 3.123284 CACAAGTGCACTTTGTTTGGTTG 59.877 43.478 29.23 17.46 33.11 3.77
2367 2464 2.008752 AGTGCACTTTGTTTGGTTGC 57.991 45.000 15.25 0.00 0.00 4.17
2368 2465 1.006086 GTGCACTTTGTTTGGTTGCC 58.994 50.000 10.32 0.00 0.00 4.52
2369 2466 0.901124 TGCACTTTGTTTGGTTGCCT 59.099 45.000 0.00 0.00 0.00 4.75
2370 2467 1.289276 GCACTTTGTTTGGTTGCCTG 58.711 50.000 0.00 0.00 0.00 4.85
2371 2468 1.134848 GCACTTTGTTTGGTTGCCTGA 60.135 47.619 0.00 0.00 0.00 3.86
2372 2469 2.676463 GCACTTTGTTTGGTTGCCTGAA 60.676 45.455 0.00 0.00 0.00 3.02
2373 2470 3.795877 CACTTTGTTTGGTTGCCTGAAT 58.204 40.909 0.00 0.00 0.00 2.57
2374 2471 4.190772 CACTTTGTTTGGTTGCCTGAATT 58.809 39.130 0.00 0.00 0.00 2.17
2375 2472 4.034279 CACTTTGTTTGGTTGCCTGAATTG 59.966 41.667 0.00 0.00 0.00 2.32
2376 2473 2.906691 TGTTTGGTTGCCTGAATTGG 57.093 45.000 0.00 0.00 0.00 3.16
2383 2480 2.580815 GCCTGAATTGGCCCAAGC 59.419 61.111 1.16 0.00 46.82 4.01
2384 2481 2.887360 CCTGAATTGGCCCAAGCG 59.113 61.111 1.16 0.00 41.24 4.68
2385 2482 2.713967 CCTGAATTGGCCCAAGCGG 61.714 63.158 1.16 1.60 41.24 5.52
2394 2491 3.443045 CCCAAGCGGCACATGGAC 61.443 66.667 17.62 0.00 36.27 4.02
2395 2492 2.672651 CCAAGCGGCACATGGACA 60.673 61.111 12.44 0.00 36.27 4.02
2396 2493 2.267351 CCAAGCGGCACATGGACAA 61.267 57.895 12.44 0.00 36.27 3.18
2397 2494 1.210931 CAAGCGGCACATGGACAAG 59.789 57.895 1.45 0.00 0.00 3.16
2398 2495 1.973281 AAGCGGCACATGGACAAGG 60.973 57.895 1.45 0.00 0.00 3.61
2399 2496 2.672996 GCGGCACATGGACAAGGT 60.673 61.111 0.00 0.00 0.00 3.50
2400 2497 2.690778 GCGGCACATGGACAAGGTC 61.691 63.158 0.00 0.00 0.00 3.85
2401 2498 1.003355 CGGCACATGGACAAGGTCT 60.003 57.895 0.00 0.00 32.47 3.85
2402 2499 0.606401 CGGCACATGGACAAGGTCTT 60.606 55.000 0.00 0.00 32.47 3.01
2403 2500 1.620822 GGCACATGGACAAGGTCTTT 58.379 50.000 0.00 0.00 32.47 2.52
2404 2501 1.270550 GGCACATGGACAAGGTCTTTG 59.729 52.381 0.00 0.00 42.68 2.77
2405 2502 1.270550 GCACATGGACAAGGTCTTTGG 59.729 52.381 0.00 0.00 41.25 3.28
2406 2503 2.586425 CACATGGACAAGGTCTTTGGT 58.414 47.619 0.00 0.00 41.25 3.67
2407 2504 2.958355 CACATGGACAAGGTCTTTGGTT 59.042 45.455 0.00 0.00 41.25 3.67
2408 2505 2.958355 ACATGGACAAGGTCTTTGGTTG 59.042 45.455 0.00 0.00 41.25 3.77
2409 2506 1.398692 TGGACAAGGTCTTTGGTTGC 58.601 50.000 0.00 0.00 41.25 4.17
2410 2507 1.341482 TGGACAAGGTCTTTGGTTGCA 60.341 47.619 0.00 0.00 41.25 4.08
2411 2508 1.963515 GGACAAGGTCTTTGGTTGCAT 59.036 47.619 0.00 0.00 41.25 3.96
2412 2509 3.153919 GGACAAGGTCTTTGGTTGCATA 58.846 45.455 0.00 0.00 41.25 3.14
2413 2510 3.763897 GGACAAGGTCTTTGGTTGCATAT 59.236 43.478 0.00 0.00 41.25 1.78
2414 2511 4.380867 GGACAAGGTCTTTGGTTGCATATG 60.381 45.833 0.00 0.00 41.25 1.78
2415 2512 3.511146 ACAAGGTCTTTGGTTGCATATGG 59.489 43.478 4.56 0.00 41.25 2.74
2416 2513 2.102578 AGGTCTTTGGTTGCATATGGC 58.897 47.619 4.56 0.00 45.13 4.40
2417 2514 6.968937 CAAGGTCTTTGGTTGCATATGGCG 62.969 50.000 4.56 0.00 38.06 5.69
2428 2525 2.998772 GCATATGGCGTAAATGGTGTG 58.001 47.619 4.56 0.00 0.00 3.82
2429 2526 2.858260 GCATATGGCGTAAATGGTGTGC 60.858 50.000 4.56 0.00 0.00 4.57
2430 2527 2.411628 TATGGCGTAAATGGTGTGCT 57.588 45.000 0.00 0.00 0.00 4.40
2431 2528 1.544724 ATGGCGTAAATGGTGTGCTT 58.455 45.000 0.00 0.00 0.00 3.91
2432 2529 2.186532 TGGCGTAAATGGTGTGCTTA 57.813 45.000 0.00 0.00 0.00 3.09
2433 2530 1.807742 TGGCGTAAATGGTGTGCTTAC 59.192 47.619 0.00 0.00 0.00 2.34
2434 2531 1.131693 GGCGTAAATGGTGTGCTTACC 59.868 52.381 3.35 3.35 41.24 2.85
2435 2532 2.081462 GCGTAAATGGTGTGCTTACCT 58.919 47.619 10.58 0.00 41.43 3.08
2436 2533 2.486592 GCGTAAATGGTGTGCTTACCTT 59.513 45.455 10.58 2.77 41.43 3.50
2437 2534 3.669557 GCGTAAATGGTGTGCTTACCTTG 60.670 47.826 10.58 0.00 41.43 3.61
2438 2535 3.500680 CGTAAATGGTGTGCTTACCTTGT 59.499 43.478 10.58 3.46 41.43 3.16
2439 2536 4.691685 CGTAAATGGTGTGCTTACCTTGTA 59.308 41.667 10.58 2.65 41.43 2.41
2440 2537 5.390145 CGTAAATGGTGTGCTTACCTTGTAC 60.390 44.000 10.58 11.58 41.43 2.90
2441 2538 2.554370 TGGTGTGCTTACCTTGTACC 57.446 50.000 10.58 0.00 41.43 3.34
2442 2539 1.072648 TGGTGTGCTTACCTTGTACCC 59.927 52.381 10.58 0.00 41.43 3.69
2443 2540 1.350019 GGTGTGCTTACCTTGTACCCT 59.650 52.381 3.11 0.00 37.74 4.34
2444 2541 2.568509 GGTGTGCTTACCTTGTACCCTA 59.431 50.000 3.11 0.00 37.74 3.53
2445 2542 3.369157 GGTGTGCTTACCTTGTACCCTAG 60.369 52.174 3.11 0.00 37.74 3.02
2446 2543 3.260128 GTGTGCTTACCTTGTACCCTAGT 59.740 47.826 0.00 0.00 0.00 2.57
2447 2544 3.905591 TGTGCTTACCTTGTACCCTAGTT 59.094 43.478 0.00 0.00 0.00 2.24
2448 2545 4.251268 GTGCTTACCTTGTACCCTAGTTG 58.749 47.826 0.00 0.00 0.00 3.16
2449 2546 3.262405 TGCTTACCTTGTACCCTAGTTGG 59.738 47.826 0.00 0.00 0.00 3.77
2450 2547 3.262660 GCTTACCTTGTACCCTAGTTGGT 59.737 47.826 0.00 0.00 42.62 3.67
2451 2548 4.828829 CTTACCTTGTACCCTAGTTGGTG 58.171 47.826 1.21 0.00 39.53 4.17
2452 2549 2.980548 ACCTTGTACCCTAGTTGGTGA 58.019 47.619 1.21 0.00 39.53 4.02
2453 2550 2.904434 ACCTTGTACCCTAGTTGGTGAG 59.096 50.000 1.21 0.00 39.53 3.51
2454 2551 2.354805 CCTTGTACCCTAGTTGGTGAGC 60.355 54.545 1.21 0.00 39.53 4.26
2455 2552 2.320681 TGTACCCTAGTTGGTGAGCT 57.679 50.000 1.21 0.00 39.53 4.09
2456 2553 2.616524 TGTACCCTAGTTGGTGAGCTT 58.383 47.619 1.21 0.00 39.53 3.74
2457 2554 3.781808 TGTACCCTAGTTGGTGAGCTTA 58.218 45.455 1.21 0.00 39.53 3.09
2458 2555 3.512724 TGTACCCTAGTTGGTGAGCTTAC 59.487 47.826 0.00 0.00 39.53 2.34
2459 2556 1.907255 ACCCTAGTTGGTGAGCTTACC 59.093 52.381 20.46 20.46 37.20 2.85
2460 2557 1.209747 CCCTAGTTGGTGAGCTTACCC 59.790 57.143 23.81 10.24 40.09 3.69
2461 2558 1.906574 CCTAGTTGGTGAGCTTACCCA 59.093 52.381 23.81 11.37 40.09 4.51
2462 2559 2.354805 CCTAGTTGGTGAGCTTACCCAC 60.355 54.545 23.81 22.15 40.09 4.61
2463 2560 1.136828 AGTTGGTGAGCTTACCCACA 58.863 50.000 27.24 10.21 38.48 4.17
2464 2561 1.493022 AGTTGGTGAGCTTACCCACAA 59.507 47.619 27.24 13.31 38.48 3.33
2465 2562 2.108250 AGTTGGTGAGCTTACCCACAAT 59.892 45.455 27.24 10.37 38.48 2.71
2466 2563 2.198827 TGGTGAGCTTACCCACAATG 57.801 50.000 23.81 0.00 40.09 2.82
2467 2564 1.702401 TGGTGAGCTTACCCACAATGA 59.298 47.619 23.81 1.29 40.09 2.57
2468 2565 2.308570 TGGTGAGCTTACCCACAATGAT 59.691 45.455 23.81 0.00 40.09 2.45
2469 2566 2.945668 GGTGAGCTTACCCACAATGATC 59.054 50.000 16.76 0.00 34.56 2.92
2470 2567 3.609853 GTGAGCTTACCCACAATGATCA 58.390 45.455 0.00 0.00 33.72 2.92
2471 2568 3.375299 GTGAGCTTACCCACAATGATCAC 59.625 47.826 0.00 0.00 33.72 3.06
2472 2569 3.008923 TGAGCTTACCCACAATGATCACA 59.991 43.478 0.00 0.00 0.00 3.58
2473 2570 3.347216 AGCTTACCCACAATGATCACAC 58.653 45.455 0.00 0.00 0.00 3.82
2474 2571 2.423538 GCTTACCCACAATGATCACACC 59.576 50.000 0.00 0.00 0.00 4.16
2475 2572 2.799126 TACCCACAATGATCACACCC 57.201 50.000 0.00 0.00 0.00 4.61
2476 2573 0.776810 ACCCACAATGATCACACCCA 59.223 50.000 0.00 0.00 0.00 4.51
2477 2574 1.146774 ACCCACAATGATCACACCCAA 59.853 47.619 0.00 0.00 0.00 4.12
2478 2575 1.545582 CCCACAATGATCACACCCAAC 59.454 52.381 0.00 0.00 0.00 3.77
2479 2576 2.237643 CCACAATGATCACACCCAACA 58.762 47.619 0.00 0.00 0.00 3.33
2480 2577 2.030007 CCACAATGATCACACCCAACAC 60.030 50.000 0.00 0.00 0.00 3.32
2481 2578 2.030007 CACAATGATCACACCCAACACC 60.030 50.000 0.00 0.00 0.00 4.16
2482 2579 1.545582 CAATGATCACACCCAACACCC 59.454 52.381 0.00 0.00 0.00 4.61
2483 2580 1.075601 ATGATCACACCCAACACCCT 58.924 50.000 0.00 0.00 0.00 4.34
2484 2581 1.735926 TGATCACACCCAACACCCTA 58.264 50.000 0.00 0.00 0.00 3.53
2485 2582 2.058705 TGATCACACCCAACACCCTAA 58.941 47.619 0.00 0.00 0.00 2.69
2486 2583 2.224670 TGATCACACCCAACACCCTAAC 60.225 50.000 0.00 0.00 0.00 2.34
2487 2584 0.107081 TCACACCCAACACCCTAACG 59.893 55.000 0.00 0.00 0.00 3.18
2488 2585 1.228033 ACACCCAACACCCTAACGC 60.228 57.895 0.00 0.00 0.00 4.84
2489 2586 1.969589 CACCCAACACCCTAACGCC 60.970 63.158 0.00 0.00 0.00 5.68
2490 2587 2.432563 CCCAACACCCTAACGCCA 59.567 61.111 0.00 0.00 0.00 5.69
2491 2588 1.969589 CCCAACACCCTAACGCCAC 60.970 63.158 0.00 0.00 0.00 5.01
2492 2589 1.228003 CCAACACCCTAACGCCACA 60.228 57.895 0.00 0.00 0.00 4.17
2493 2590 0.820074 CCAACACCCTAACGCCACAA 60.820 55.000 0.00 0.00 0.00 3.33
2494 2591 0.309612 CAACACCCTAACGCCACAAC 59.690 55.000 0.00 0.00 0.00 3.32
2495 2592 0.107116 AACACCCTAACGCCACAACA 60.107 50.000 0.00 0.00 0.00 3.33
2496 2593 0.816421 ACACCCTAACGCCACAACAC 60.816 55.000 0.00 0.00 0.00 3.32
2497 2594 0.816018 CACCCTAACGCCACAACACA 60.816 55.000 0.00 0.00 0.00 3.72
2498 2595 0.534203 ACCCTAACGCCACAACACAG 60.534 55.000 0.00 0.00 0.00 3.66
2499 2596 1.574428 CCTAACGCCACAACACAGC 59.426 57.895 0.00 0.00 0.00 4.40
2505 2602 3.903876 GCCACAACACAGCGATATG 57.096 52.632 0.00 0.00 0.00 1.78
2506 2603 1.086696 GCCACAACACAGCGATATGT 58.913 50.000 0.00 0.00 0.00 2.29
2507 2604 1.062587 GCCACAACACAGCGATATGTC 59.937 52.381 0.00 0.00 0.00 3.06
2508 2605 2.621338 CCACAACACAGCGATATGTCT 58.379 47.619 0.00 0.00 0.00 3.41
2509 2606 2.604914 CCACAACACAGCGATATGTCTC 59.395 50.000 0.00 0.00 0.00 3.36
2510 2607 2.604914 CACAACACAGCGATATGTCTCC 59.395 50.000 0.00 0.00 0.00 3.71
2511 2608 2.233676 ACAACACAGCGATATGTCTCCA 59.766 45.455 0.00 0.00 0.00 3.86
2512 2609 3.261580 CAACACAGCGATATGTCTCCAA 58.738 45.455 0.00 0.00 0.00 3.53
2513 2610 2.893637 ACACAGCGATATGTCTCCAAC 58.106 47.619 0.00 0.00 0.00 3.77
2514 2611 1.854743 CACAGCGATATGTCTCCAACG 59.145 52.381 0.00 0.00 0.00 4.10
2515 2612 1.476891 ACAGCGATATGTCTCCAACGT 59.523 47.619 0.00 0.00 0.00 3.99
2516 2613 2.686405 ACAGCGATATGTCTCCAACGTA 59.314 45.455 0.00 0.00 33.91 3.57
2517 2614 3.318275 ACAGCGATATGTCTCCAACGTAT 59.682 43.478 0.00 0.00 41.77 3.06
2518 2615 3.914966 CAGCGATATGTCTCCAACGTATC 59.085 47.826 0.00 7.15 46.70 2.24
2526 2623 9.477484 GATATGTCTCCAACGTATCTACAATTT 57.523 33.333 9.21 0.00 46.67 1.82
2527 2624 9.832445 ATATGTCTCCAACGTATCTACAATTTT 57.168 29.630 0.00 0.00 35.56 1.82
2528 2625 7.972832 TGTCTCCAACGTATCTACAATTTTT 57.027 32.000 0.00 0.00 0.00 1.94
2578 2675 9.812347 TCCATCTAGGATGTTTTATATGCATTT 57.188 29.630 3.54 0.00 43.07 2.32
2619 2716 8.584063 TGATTTTTGGGACTAACCTATTAACC 57.416 34.615 0.00 0.00 38.98 2.85
2620 2717 8.395605 TGATTTTTGGGACTAACCTATTAACCT 58.604 33.333 0.00 0.00 38.98 3.50
2621 2718 9.910267 GATTTTTGGGACTAACCTATTAACCTA 57.090 33.333 0.00 0.00 38.98 3.08
2622 2719 9.916360 ATTTTTGGGACTAACCTATTAACCTAG 57.084 33.333 0.00 0.00 38.98 3.02
2623 2720 8.683776 TTTTGGGACTAACCTATTAACCTAGA 57.316 34.615 0.00 0.00 38.98 2.43
2624 2721 7.909485 TTGGGACTAACCTATTAACCTAGAG 57.091 40.000 0.00 0.00 38.98 2.43
2625 2722 5.837438 TGGGACTAACCTATTAACCTAGAGC 59.163 44.000 0.00 0.00 38.98 4.09
2626 2723 5.245751 GGGACTAACCTATTAACCTAGAGCC 59.754 48.000 0.00 0.00 38.98 4.70
2627 2724 5.245751 GGACTAACCTATTAACCTAGAGCCC 59.754 48.000 0.00 0.00 35.41 5.19
2628 2725 5.785123 ACTAACCTATTAACCTAGAGCCCA 58.215 41.667 0.00 0.00 0.00 5.36
2629 2726 5.839606 ACTAACCTATTAACCTAGAGCCCAG 59.160 44.000 0.00 0.00 0.00 4.45
2630 2727 4.282292 ACCTATTAACCTAGAGCCCAGT 57.718 45.455 0.00 0.00 0.00 4.00
2631 2728 3.967987 ACCTATTAACCTAGAGCCCAGTG 59.032 47.826 0.00 0.00 0.00 3.66
2632 2729 3.244249 CCTATTAACCTAGAGCCCAGTGC 60.244 52.174 0.00 0.00 41.71 4.40
2642 2739 3.633361 GCCCAGTGCTAGTTTCTGT 57.367 52.632 0.00 0.00 36.87 3.41
2643 2740 1.897560 GCCCAGTGCTAGTTTCTGTT 58.102 50.000 0.00 0.00 36.87 3.16
2644 2741 2.230660 GCCCAGTGCTAGTTTCTGTTT 58.769 47.619 0.00 0.00 36.87 2.83
2645 2742 2.623416 GCCCAGTGCTAGTTTCTGTTTT 59.377 45.455 0.00 0.00 36.87 2.43
2646 2743 3.068165 GCCCAGTGCTAGTTTCTGTTTTT 59.932 43.478 0.00 0.00 36.87 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 7.942341 TCAACTACCCACAGATTGTAAATCTTT 59.058 33.333 0.00 0.00 0.00 2.52
667 676 4.772886 ATCTAATGGGCCCGGATTATAC 57.227 45.455 19.37 0.00 0.00 1.47
745 754 9.959693 CTATACCTATACCTACCTACCTACCTA 57.040 40.741 0.00 0.00 0.00 3.08
746 755 7.854040 CCTATACCTATACCTACCTACCTACCT 59.146 44.444 0.00 0.00 0.00 3.08
747 756 7.629721 ACCTATACCTATACCTACCTACCTACC 59.370 44.444 0.00 0.00 0.00 3.18
748 757 8.631275 ACCTATACCTATACCTACCTACCTAC 57.369 42.308 0.00 0.00 0.00 3.18
889 904 8.274322 TCACCTATCTAACAATGTCAATCCAAT 58.726 33.333 0.00 0.00 0.00 3.16
1020 1040 4.743057 TCTTTGTGTGATCGAGGATGAT 57.257 40.909 0.00 0.00 0.00 2.45
1021 1041 4.535526 TTCTTTGTGTGATCGAGGATGA 57.464 40.909 0.00 0.00 0.00 2.92
1033 1053 3.030291 TGTGCCTTGGATTTCTTTGTGT 58.970 40.909 0.00 0.00 0.00 3.72
1038 1058 2.365293 GTGGTTGTGCCTTGGATTTCTT 59.635 45.455 0.00 0.00 38.35 2.52
1141 1166 2.667318 CGCCACAGCACCGTTGTAG 61.667 63.158 0.00 0.00 39.83 2.74
1150 1175 3.310307 TAGCAGGTCGCCACAGCA 61.310 61.111 1.50 0.00 44.04 4.41
1383 1408 1.737696 CGTAGTCGTTAAGGCATGCCA 60.738 52.381 37.18 16.60 38.92 4.92
1498 1523 2.477245 TCCCTGCAACTATTCAGGCTA 58.523 47.619 2.89 0.00 46.48 3.93
1523 1548 3.007614 GTGTACATAACCGGCCCTATGAT 59.992 47.826 20.08 10.40 31.28 2.45
1562 1587 1.448922 TTTCGGTCGGCCAAAACCAG 61.449 55.000 6.96 10.55 35.13 4.00
1656 1710 3.496130 CCGCATTTATTGATCGCTCTTCT 59.504 43.478 0.00 0.00 0.00 2.85
1769 1865 2.279784 GCCCGCTTCTCTCCATCG 60.280 66.667 0.00 0.00 0.00 3.84
1776 1872 5.689383 TTGAAATATATTGCCCGCTTCTC 57.311 39.130 0.00 0.00 0.00 2.87
1778 1874 6.322491 GGTATTGAAATATATTGCCCGCTTC 58.678 40.000 0.00 0.00 0.00 3.86
1781 1877 4.142249 GGGGTATTGAAATATATTGCCCGC 60.142 45.833 0.00 0.00 34.63 6.13
1829 1925 7.117523 GCAGCCTACATAAATCTCACATCTAAG 59.882 40.741 0.00 0.00 0.00 2.18
1835 1931 4.486125 TGCAGCCTACATAAATCTCACA 57.514 40.909 0.00 0.00 0.00 3.58
1869 1965 9.646522 AGTTCAAGACCTTGCCAATATAATATT 57.353 29.630 4.94 0.00 40.24 1.28
1871 1967 8.271458 TGAGTTCAAGACCTTGCCAATATAATA 58.729 33.333 4.94 0.00 40.24 0.98
1872 1968 7.118723 TGAGTTCAAGACCTTGCCAATATAAT 58.881 34.615 4.94 0.00 40.24 1.28
1873 1969 6.480763 TGAGTTCAAGACCTTGCCAATATAA 58.519 36.000 4.94 0.00 40.24 0.98
1874 1970 6.061022 TGAGTTCAAGACCTTGCCAATATA 57.939 37.500 4.94 0.00 40.24 0.86
1875 1971 4.922206 TGAGTTCAAGACCTTGCCAATAT 58.078 39.130 4.94 0.00 40.24 1.28
1876 1972 4.326826 CTGAGTTCAAGACCTTGCCAATA 58.673 43.478 4.94 0.00 40.24 1.90
1898 1995 2.948801 ATACCCGAGCCTGGAGGTCC 62.949 65.000 0.00 0.00 40.01 4.46
1912 2009 8.500753 TGGCGTATGAATTCAATATTATACCC 57.499 34.615 13.09 11.95 0.00 3.69
1932 2029 0.613260 TTAGATGAGTTGGCTGGCGT 59.387 50.000 0.00 0.00 0.00 5.68
1934 2031 3.084786 AGTTTTAGATGAGTTGGCTGGC 58.915 45.455 0.00 0.00 0.00 4.85
1935 2032 4.394300 CAGAGTTTTAGATGAGTTGGCTGG 59.606 45.833 0.00 0.00 0.00 4.85
1940 2037 5.920840 TCACGTCAGAGTTTTAGATGAGTTG 59.079 40.000 0.00 0.00 0.00 3.16
1943 2040 6.325596 TCATCACGTCAGAGTTTTAGATGAG 58.674 40.000 0.00 0.00 36.63 2.90
1949 2046 6.327279 TCTCTTCATCACGTCAGAGTTTTA 57.673 37.500 0.00 0.00 35.28 1.52
1954 2051 2.479389 GCCTCTCTTCATCACGTCAGAG 60.479 54.545 0.00 0.00 35.09 3.35
1957 2054 0.171231 CGCCTCTCTTCATCACGTCA 59.829 55.000 0.00 0.00 0.00 4.35
1958 2055 0.526524 CCGCCTCTCTTCATCACGTC 60.527 60.000 0.00 0.00 0.00 4.34
1960 2057 0.526524 GTCCGCCTCTCTTCATCACG 60.527 60.000 0.00 0.00 0.00 4.35
1961 2058 0.532573 TGTCCGCCTCTCTTCATCAC 59.467 55.000 0.00 0.00 0.00 3.06
1971 2068 3.485216 CGTTGAAACATATTGTCCGCCTC 60.485 47.826 0.00 0.00 0.00 4.70
1974 2071 3.733024 TCGTTGAAACATATTGTCCGC 57.267 42.857 0.00 0.00 0.00 5.54
1978 2075 7.223582 TGCAAAATGTTCGTTGAAACATATTGT 59.776 29.630 2.94 0.00 46.49 2.71
2027 2124 2.071778 AGTCATGGAGAGGAGAGAGC 57.928 55.000 0.00 0.00 0.00 4.09
2028 2125 4.437682 AGTAGTCATGGAGAGGAGAGAG 57.562 50.000 0.00 0.00 0.00 3.20
2029 2126 4.684757 CGAAGTAGTCATGGAGAGGAGAGA 60.685 50.000 0.00 0.00 0.00 3.10
2072 2169 2.375174 TGCCTGAAAGAGGTTATGGTGT 59.625 45.455 0.00 0.00 44.97 4.16
2074 2171 2.644798 AGTGCCTGAAAGAGGTTATGGT 59.355 45.455 0.00 0.00 44.97 3.55
2092 2189 5.982356 TCCTCAAATCATAGGACTGAAGTG 58.018 41.667 0.00 0.00 36.97 3.16
2097 2194 5.591472 TGCAAATCCTCAAATCATAGGACTG 59.409 40.000 0.00 0.00 44.53 3.51
2120 2217 3.123804 ACTGTCGTGTTAGAACAAGCTG 58.876 45.455 3.76 6.02 41.21 4.24
2128 2225 2.829720 AGGCCAATACTGTCGTGTTAGA 59.170 45.455 5.01 0.00 0.00 2.10
2131 2228 2.093658 CCTAGGCCAATACTGTCGTGTT 60.094 50.000 5.01 0.00 0.00 3.32
2138 2235 2.565841 GTTGCTCCTAGGCCAATACTG 58.434 52.381 5.01 0.00 0.00 2.74
2142 2239 1.224592 CCGTTGCTCCTAGGCCAAT 59.775 57.895 5.01 0.00 0.00 3.16
2175 2272 4.681744 TGTTTCTTTGTGGTCAATTCTGC 58.318 39.130 0.00 0.00 33.32 4.26
2204 2301 5.061920 TCACAACTAAAACCAAACACACC 57.938 39.130 0.00 0.00 0.00 4.16
2208 2305 6.334102 ACTGTTCACAACTAAAACCAAACA 57.666 33.333 0.00 0.00 0.00 2.83
2209 2306 7.597369 AGAAACTGTTCACAACTAAAACCAAAC 59.403 33.333 0.00 0.00 36.09 2.93
2210 2307 7.596995 CAGAAACTGTTCACAACTAAAACCAAA 59.403 33.333 0.00 0.00 36.09 3.28
2212 2309 6.616947 CAGAAACTGTTCACAACTAAAACCA 58.383 36.000 0.00 0.00 36.09 3.67
2213 2310 5.515270 GCAGAAACTGTTCACAACTAAAACC 59.485 40.000 0.00 0.00 36.09 3.27
2214 2311 6.090129 TGCAGAAACTGTTCACAACTAAAAC 58.910 36.000 0.00 0.00 36.09 2.43
2215 2312 6.260870 TGCAGAAACTGTTCACAACTAAAA 57.739 33.333 0.00 0.00 36.09 1.52
2216 2313 5.888691 TGCAGAAACTGTTCACAACTAAA 57.111 34.783 0.00 0.00 36.09 1.85
2217 2314 6.264832 CAATGCAGAAACTGTTCACAACTAA 58.735 36.000 0.00 0.00 36.09 2.24
2218 2315 5.733091 GCAATGCAGAAACTGTTCACAACTA 60.733 40.000 0.00 0.00 36.09 2.24
2219 2316 4.675510 CAATGCAGAAACTGTTCACAACT 58.324 39.130 0.00 0.00 36.09 3.16
2220 2317 3.243643 GCAATGCAGAAACTGTTCACAAC 59.756 43.478 0.00 0.00 36.09 3.32
2221 2318 3.119209 TGCAATGCAGAAACTGTTCACAA 60.119 39.130 2.72 0.00 36.09 3.33
2222 2319 2.426381 TGCAATGCAGAAACTGTTCACA 59.574 40.909 2.72 0.00 36.09 3.58
2223 2320 3.082698 TGCAATGCAGAAACTGTTCAC 57.917 42.857 2.72 0.00 36.09 3.18
2224 2321 4.277921 TGTATGCAATGCAGAAACTGTTCA 59.722 37.500 14.98 0.00 43.65 3.18
2225 2322 4.618489 GTGTATGCAATGCAGAAACTGTTC 59.382 41.667 15.24 0.00 40.43 3.18
2226 2323 4.279169 AGTGTATGCAATGCAGAAACTGTT 59.721 37.500 23.12 1.32 45.12 3.16
2227 2324 3.822735 AGTGTATGCAATGCAGAAACTGT 59.177 39.130 23.12 2.05 45.12 3.55
2228 2325 4.430137 AGTGTATGCAATGCAGAAACTG 57.570 40.909 23.12 0.00 45.12 3.16
2230 2327 5.051891 AGAAGTGTATGCAATGCAGAAAC 57.948 39.130 14.77 14.77 40.43 2.78
2231 2328 4.761227 TGAGAAGTGTATGCAATGCAGAAA 59.239 37.500 14.98 0.00 40.43 2.52
2232 2329 4.325972 TGAGAAGTGTATGCAATGCAGAA 58.674 39.130 14.98 0.98 40.43 3.02
2233 2330 3.941573 TGAGAAGTGTATGCAATGCAGA 58.058 40.909 14.98 6.18 40.43 4.26
2234 2331 4.409570 GTTGAGAAGTGTATGCAATGCAG 58.590 43.478 14.98 0.00 40.43 4.41
2235 2332 3.191162 GGTTGAGAAGTGTATGCAATGCA 59.809 43.478 11.44 11.44 44.86 3.96
2236 2333 3.428045 GGGTTGAGAAGTGTATGCAATGC 60.428 47.826 0.00 0.00 0.00 3.56
2237 2334 3.758023 TGGGTTGAGAAGTGTATGCAATG 59.242 43.478 0.00 0.00 0.00 2.82
2238 2335 4.012374 CTGGGTTGAGAAGTGTATGCAAT 58.988 43.478 0.00 0.00 0.00 3.56
2239 2336 3.411446 CTGGGTTGAGAAGTGTATGCAA 58.589 45.455 0.00 0.00 0.00 4.08
2240 2337 2.875672 GCTGGGTTGAGAAGTGTATGCA 60.876 50.000 0.00 0.00 0.00 3.96
2241 2338 1.740025 GCTGGGTTGAGAAGTGTATGC 59.260 52.381 0.00 0.00 0.00 3.14
2242 2339 2.026822 AGGCTGGGTTGAGAAGTGTATG 60.027 50.000 0.00 0.00 0.00 2.39
2243 2340 2.026822 CAGGCTGGGTTGAGAAGTGTAT 60.027 50.000 6.61 0.00 0.00 2.29
2244 2341 1.347707 CAGGCTGGGTTGAGAAGTGTA 59.652 52.381 6.61 0.00 0.00 2.90
2245 2342 0.109342 CAGGCTGGGTTGAGAAGTGT 59.891 55.000 6.61 0.00 0.00 3.55
2246 2343 0.607489 CCAGGCTGGGTTGAGAAGTG 60.607 60.000 26.34 0.00 32.67 3.16
2247 2344 1.062488 ACCAGGCTGGGTTGAGAAGT 61.062 55.000 35.34 10.12 43.37 3.01
2248 2345 1.763770 ACCAGGCTGGGTTGAGAAG 59.236 57.895 35.34 9.19 43.37 2.85
2249 2346 4.002006 ACCAGGCTGGGTTGAGAA 57.998 55.556 35.34 0.00 43.37 2.87
2255 2352 2.296945 TTTGCTCAACCAGGCTGGGT 62.297 55.000 35.34 29.30 43.37 4.51
2256 2353 1.114722 TTTTGCTCAACCAGGCTGGG 61.115 55.000 35.34 19.93 43.37 4.45
2257 2354 0.752054 TTTTTGCTCAACCAGGCTGG 59.248 50.000 31.62 31.62 45.02 4.85
2258 2355 1.136695 TGTTTTTGCTCAACCAGGCTG 59.863 47.619 7.75 7.75 0.00 4.85
2259 2356 1.410153 CTGTTTTTGCTCAACCAGGCT 59.590 47.619 0.00 0.00 0.00 4.58
2260 2357 1.538849 CCTGTTTTTGCTCAACCAGGC 60.539 52.381 8.36 0.00 0.00 4.85
2261 2358 1.538849 GCCTGTTTTTGCTCAACCAGG 60.539 52.381 13.55 13.55 0.00 4.45
2262 2359 1.538849 GGCCTGTTTTTGCTCAACCAG 60.539 52.381 0.00 0.00 0.00 4.00
2263 2360 0.463620 GGCCTGTTTTTGCTCAACCA 59.536 50.000 0.00 0.00 0.00 3.67
2264 2361 0.249868 GGGCCTGTTTTTGCTCAACC 60.250 55.000 0.84 0.00 0.00 3.77
2265 2362 0.752658 AGGGCCTGTTTTTGCTCAAC 59.247 50.000 4.50 0.00 0.00 3.18
2266 2363 2.373335 TAGGGCCTGTTTTTGCTCAA 57.627 45.000 18.53 0.00 0.00 3.02
2267 2364 2.373335 TTAGGGCCTGTTTTTGCTCA 57.627 45.000 18.53 0.00 0.00 4.26
2268 2365 2.675032 GCATTAGGGCCTGTTTTTGCTC 60.675 50.000 18.53 0.00 0.00 4.26
2269 2366 1.276138 GCATTAGGGCCTGTTTTTGCT 59.724 47.619 18.53 0.00 0.00 3.91
2270 2367 1.725641 GCATTAGGGCCTGTTTTTGC 58.274 50.000 18.53 13.59 0.00 3.68
2271 2368 1.272212 ACGCATTAGGGCCTGTTTTTG 59.728 47.619 18.53 7.43 0.00 2.44
2272 2369 1.544246 GACGCATTAGGGCCTGTTTTT 59.456 47.619 18.53 0.00 0.00 1.94
2273 2370 1.173913 GACGCATTAGGGCCTGTTTT 58.826 50.000 18.53 0.00 0.00 2.43
2274 2371 0.037590 TGACGCATTAGGGCCTGTTT 59.962 50.000 18.53 0.00 0.00 2.83
2275 2372 0.255890 ATGACGCATTAGGGCCTGTT 59.744 50.000 18.53 0.00 0.00 3.16
2276 2373 0.179045 GATGACGCATTAGGGCCTGT 60.179 55.000 18.53 4.37 0.00 4.00
2277 2374 0.107456 AGATGACGCATTAGGGCCTG 59.893 55.000 18.53 0.54 0.00 4.85
2278 2375 1.344763 GTAGATGACGCATTAGGGCCT 59.655 52.381 12.58 12.58 0.00 5.19
2279 2376 1.070134 TGTAGATGACGCATTAGGGCC 59.930 52.381 0.00 0.00 0.00 5.80
2280 2377 2.526304 TGTAGATGACGCATTAGGGC 57.474 50.000 0.00 0.00 0.00 5.19
2281 2378 4.060038 ACTTGTAGATGACGCATTAGGG 57.940 45.455 0.00 0.00 0.00 3.53
2282 2379 4.870426 ACAACTTGTAGATGACGCATTAGG 59.130 41.667 0.00 0.00 0.00 2.69
2283 2380 6.408858 AACAACTTGTAGATGACGCATTAG 57.591 37.500 0.00 0.00 0.00 1.73
2284 2381 6.348132 CCAAACAACTTGTAGATGACGCATTA 60.348 38.462 0.00 0.00 32.65 1.90
2285 2382 5.451908 CAAACAACTTGTAGATGACGCATT 58.548 37.500 0.00 0.00 0.00 3.56
2286 2383 4.083324 CCAAACAACTTGTAGATGACGCAT 60.083 41.667 0.00 0.00 32.65 4.73
2287 2384 3.249799 CCAAACAACTTGTAGATGACGCA 59.750 43.478 0.00 0.00 32.65 5.24
2288 2385 3.250040 ACCAAACAACTTGTAGATGACGC 59.750 43.478 0.00 0.00 32.65 5.19
2289 2386 5.204833 CAACCAAACAACTTGTAGATGACG 58.795 41.667 0.00 0.00 32.65 4.35
2290 2387 4.976116 GCAACCAAACAACTTGTAGATGAC 59.024 41.667 0.00 0.00 32.65 3.06
2291 2388 4.887071 AGCAACCAAACAACTTGTAGATGA 59.113 37.500 0.00 0.00 32.65 2.92
2292 2389 5.186996 AGCAACCAAACAACTTGTAGATG 57.813 39.130 0.00 0.00 32.65 2.90
2293 2390 5.591099 CAAGCAACCAAACAACTTGTAGAT 58.409 37.500 0.00 0.00 34.43 1.98
2294 2391 4.676723 GCAAGCAACCAAACAACTTGTAGA 60.677 41.667 0.00 0.00 39.86 2.59
2295 2392 3.551485 GCAAGCAACCAAACAACTTGTAG 59.449 43.478 0.00 0.00 39.86 2.74
2296 2393 3.056536 TGCAAGCAACCAAACAACTTGTA 60.057 39.130 0.00 0.00 39.86 2.41
2297 2394 2.289320 TGCAAGCAACCAAACAACTTGT 60.289 40.909 0.00 0.00 39.86 3.16
2298 2395 2.344950 TGCAAGCAACCAAACAACTTG 58.655 42.857 0.00 0.00 40.49 3.16
2299 2396 2.758736 TGCAAGCAACCAAACAACTT 57.241 40.000 0.00 0.00 0.00 2.66
2300 2397 2.168106 TGATGCAAGCAACCAAACAACT 59.832 40.909 0.00 0.00 0.00 3.16
2301 2398 2.548875 TGATGCAAGCAACCAAACAAC 58.451 42.857 0.00 0.00 0.00 3.32
2302 2399 2.975732 TGATGCAAGCAACCAAACAA 57.024 40.000 0.00 0.00 0.00 2.83
2303 2400 2.483363 CCTTGATGCAAGCAACCAAACA 60.483 45.455 0.00 0.00 37.27 2.83
2304 2401 2.137523 CCTTGATGCAAGCAACCAAAC 58.862 47.619 0.00 0.00 37.27 2.93
2305 2402 1.070445 CCCTTGATGCAAGCAACCAAA 59.930 47.619 0.00 0.00 37.27 3.28
2306 2403 0.680618 CCCTTGATGCAAGCAACCAA 59.319 50.000 0.00 6.01 37.27 3.67
2307 2404 0.469705 ACCCTTGATGCAAGCAACCA 60.470 50.000 0.00 0.00 37.27 3.67
2308 2405 0.244721 GACCCTTGATGCAAGCAACC 59.755 55.000 0.00 0.00 37.27 3.77
2309 2406 0.244721 GGACCCTTGATGCAAGCAAC 59.755 55.000 0.00 0.00 37.27 4.17
2310 2407 0.899717 GGGACCCTTGATGCAAGCAA 60.900 55.000 2.09 0.00 41.67 3.91
2311 2408 1.304381 GGGACCCTTGATGCAAGCA 60.304 57.895 2.09 0.00 39.85 3.91
2312 2409 1.000396 AGGGACCCTTGATGCAAGC 60.000 57.895 7.44 0.00 39.85 4.01
2313 2410 1.318158 GCAGGGACCCTTGATGCAAG 61.318 60.000 11.56 0.00 40.75 4.01
2314 2411 1.304381 GCAGGGACCCTTGATGCAA 60.304 57.895 11.56 0.00 36.88 4.08
2315 2412 2.356278 GCAGGGACCCTTGATGCA 59.644 61.111 11.56 0.00 36.88 3.96
2316 2413 0.685458 AATGCAGGGACCCTTGATGC 60.685 55.000 11.56 13.18 37.40 3.91
2317 2414 2.579873 CTAATGCAGGGACCCTTGATG 58.420 52.381 11.56 0.89 0.00 3.07
2318 2415 1.496429 CCTAATGCAGGGACCCTTGAT 59.504 52.381 11.56 2.33 41.26 2.57
2319 2416 0.918983 CCTAATGCAGGGACCCTTGA 59.081 55.000 11.56 0.00 41.26 3.02
2320 2417 3.502164 CCTAATGCAGGGACCCTTG 57.498 57.895 11.56 7.98 41.26 3.61
2332 2429 4.700268 TGCACTTGTGCATTACCTAATG 57.300 40.909 22.47 1.26 44.44 1.90
2342 2439 2.335752 CAAACAAAGTGCACTTGTGCA 58.664 42.857 31.73 22.47 43.22 4.57
2343 2440 1.660104 CCAAACAAAGTGCACTTGTGC 59.340 47.619 31.73 17.73 36.12 4.57
2344 2441 2.958213 ACCAAACAAAGTGCACTTGTG 58.042 42.857 31.73 28.42 36.12 3.33
2345 2442 3.324993 CAACCAAACAAAGTGCACTTGT 58.675 40.909 31.73 25.68 36.12 3.16
2346 2443 2.094099 GCAACCAAACAAAGTGCACTTG 59.906 45.455 31.73 25.08 36.12 3.16
2347 2444 2.345876 GCAACCAAACAAAGTGCACTT 58.654 42.857 26.36 26.36 37.91 3.16
2348 2445 1.405391 GGCAACCAAACAAAGTGCACT 60.405 47.619 15.25 15.25 0.00 4.40
2349 2446 1.006086 GGCAACCAAACAAAGTGCAC 58.994 50.000 9.40 9.40 0.00 4.57
2350 2447 0.901124 AGGCAACCAAACAAAGTGCA 59.099 45.000 0.00 0.00 37.17 4.57
2351 2448 1.134848 TCAGGCAACCAAACAAAGTGC 60.135 47.619 0.00 0.00 37.17 4.40
2352 2449 2.957491 TCAGGCAACCAAACAAAGTG 57.043 45.000 0.00 0.00 37.17 3.16
2353 2450 4.190772 CAATTCAGGCAACCAAACAAAGT 58.809 39.130 0.00 0.00 37.17 2.66
2354 2451 3.560896 CCAATTCAGGCAACCAAACAAAG 59.439 43.478 0.00 0.00 37.17 2.77
2355 2452 3.539604 CCAATTCAGGCAACCAAACAAA 58.460 40.909 0.00 0.00 37.17 2.83
2356 2453 3.191078 CCAATTCAGGCAACCAAACAA 57.809 42.857 0.00 0.00 37.17 2.83
2357 2454 2.906691 CCAATTCAGGCAACCAAACA 57.093 45.000 0.00 0.00 37.17 2.83
2367 2464 2.713967 CCGCTTGGGCCAATTCAGG 61.714 63.158 21.25 16.03 34.44 3.86
2368 2465 2.887360 CCGCTTGGGCCAATTCAG 59.113 61.111 21.25 9.21 34.44 3.02
2377 2474 3.443045 GTCCATGTGCCGCTTGGG 61.443 66.667 9.98 0.00 41.33 4.12
2378 2475 2.203972 CTTGTCCATGTGCCGCTTGG 62.204 60.000 3.87 3.87 42.09 3.61
2379 2476 1.210931 CTTGTCCATGTGCCGCTTG 59.789 57.895 0.00 0.00 0.00 4.01
2380 2477 1.973281 CCTTGTCCATGTGCCGCTT 60.973 57.895 0.00 0.00 0.00 4.68
2381 2478 2.360350 CCTTGTCCATGTGCCGCT 60.360 61.111 0.00 0.00 0.00 5.52
2382 2479 2.672996 ACCTTGTCCATGTGCCGC 60.673 61.111 0.00 0.00 0.00 6.53
2383 2480 0.606401 AAGACCTTGTCCATGTGCCG 60.606 55.000 0.00 0.00 32.18 5.69
2384 2481 1.270550 CAAAGACCTTGTCCATGTGCC 59.729 52.381 0.00 0.00 32.18 5.01
2385 2482 1.270550 CCAAAGACCTTGTCCATGTGC 59.729 52.381 0.00 0.00 32.18 4.57
2386 2483 2.586425 ACCAAAGACCTTGTCCATGTG 58.414 47.619 0.00 0.00 32.18 3.21
2387 2484 2.958355 CAACCAAAGACCTTGTCCATGT 59.042 45.455 0.00 0.00 32.18 3.21
2388 2485 2.288395 GCAACCAAAGACCTTGTCCATG 60.288 50.000 0.00 0.00 32.18 3.66
2389 2486 1.963515 GCAACCAAAGACCTTGTCCAT 59.036 47.619 0.00 0.00 32.18 3.41
2390 2487 1.341482 TGCAACCAAAGACCTTGTCCA 60.341 47.619 0.00 0.00 32.18 4.02
2391 2488 1.398692 TGCAACCAAAGACCTTGTCC 58.601 50.000 0.00 0.00 32.18 4.02
2392 2489 4.380867 CCATATGCAACCAAAGACCTTGTC 60.381 45.833 0.00 0.00 32.65 3.18
2393 2490 3.511146 CCATATGCAACCAAAGACCTTGT 59.489 43.478 0.00 0.00 32.65 3.16
2394 2491 3.676873 GCCATATGCAACCAAAGACCTTG 60.677 47.826 0.00 0.00 40.77 3.61
2395 2492 2.497273 GCCATATGCAACCAAAGACCTT 59.503 45.455 0.00 0.00 40.77 3.50
2396 2493 2.102578 GCCATATGCAACCAAAGACCT 58.897 47.619 0.00 0.00 40.77 3.85
2397 2494 1.202290 CGCCATATGCAACCAAAGACC 60.202 52.381 0.00 0.00 41.33 3.85
2398 2495 1.472480 ACGCCATATGCAACCAAAGAC 59.528 47.619 0.00 0.00 41.33 3.01
2399 2496 1.832883 ACGCCATATGCAACCAAAGA 58.167 45.000 0.00 0.00 41.33 2.52
2400 2497 3.773860 TTACGCCATATGCAACCAAAG 57.226 42.857 0.00 0.00 41.33 2.77
2401 2498 4.428209 CATTTACGCCATATGCAACCAAA 58.572 39.130 0.00 0.00 41.33 3.28
2402 2499 3.181482 CCATTTACGCCATATGCAACCAA 60.181 43.478 0.00 0.00 41.33 3.67
2403 2500 2.360483 CCATTTACGCCATATGCAACCA 59.640 45.455 0.00 0.00 41.33 3.67
2404 2501 2.360801 ACCATTTACGCCATATGCAACC 59.639 45.455 0.00 0.00 41.33 3.77
2405 2502 3.181491 ACACCATTTACGCCATATGCAAC 60.181 43.478 0.00 0.00 41.33 4.17
2406 2503 3.020274 ACACCATTTACGCCATATGCAA 58.980 40.909 0.00 0.00 41.33 4.08
2407 2504 2.357323 CACACCATTTACGCCATATGCA 59.643 45.455 0.00 0.00 41.33 3.96
2408 2505 2.858260 GCACACCATTTACGCCATATGC 60.858 50.000 0.00 0.00 0.00 3.14
2409 2506 2.618241 AGCACACCATTTACGCCATATG 59.382 45.455 0.00 0.00 0.00 1.78
2410 2507 2.930950 AGCACACCATTTACGCCATAT 58.069 42.857 0.00 0.00 0.00 1.78
2411 2508 2.411628 AGCACACCATTTACGCCATA 57.588 45.000 0.00 0.00 0.00 2.74
2412 2509 1.544724 AAGCACACCATTTACGCCAT 58.455 45.000 0.00 0.00 0.00 4.40
2413 2510 1.807742 GTAAGCACACCATTTACGCCA 59.192 47.619 0.00 0.00 0.00 5.69
2414 2511 1.131693 GGTAAGCACACCATTTACGCC 59.868 52.381 2.04 0.00 38.55 5.68
2415 2512 2.081462 AGGTAAGCACACCATTTACGC 58.919 47.619 9.20 0.00 41.40 4.42
2416 2513 3.500680 ACAAGGTAAGCACACCATTTACG 59.499 43.478 9.20 0.00 41.40 3.18
2417 2514 5.106436 GGTACAAGGTAAGCACACCATTTAC 60.106 44.000 9.20 5.03 41.40 2.01
2418 2515 5.005094 GGTACAAGGTAAGCACACCATTTA 58.995 41.667 9.20 0.00 41.40 1.40
2419 2516 3.824443 GGTACAAGGTAAGCACACCATTT 59.176 43.478 9.20 0.00 41.40 2.32
2420 2517 3.418047 GGTACAAGGTAAGCACACCATT 58.582 45.455 9.20 0.00 41.40 3.16
2421 2518 2.290705 GGGTACAAGGTAAGCACACCAT 60.291 50.000 9.20 0.00 41.40 3.55
2422 2519 1.072648 GGGTACAAGGTAAGCACACCA 59.927 52.381 9.20 0.00 41.40 4.17
2423 2520 1.350019 AGGGTACAAGGTAAGCACACC 59.650 52.381 0.00 0.00 39.02 4.16
2424 2521 2.853235 AGGGTACAAGGTAAGCACAC 57.147 50.000 0.00 0.00 0.00 3.82
2425 2522 3.513517 ACTAGGGTACAAGGTAAGCACA 58.486 45.455 0.00 0.00 0.00 4.57
2426 2523 4.251268 CAACTAGGGTACAAGGTAAGCAC 58.749 47.826 0.00 0.00 0.00 4.40
2427 2524 3.262405 CCAACTAGGGTACAAGGTAAGCA 59.738 47.826 0.00 0.00 0.00 3.91
2428 2525 3.262660 ACCAACTAGGGTACAAGGTAAGC 59.737 47.826 0.00 0.00 43.89 3.09
2429 2526 4.529377 TCACCAACTAGGGTACAAGGTAAG 59.471 45.833 0.00 0.00 43.89 2.34
2430 2527 4.491675 TCACCAACTAGGGTACAAGGTAA 58.508 43.478 0.00 0.00 43.89 2.85
2431 2528 4.091549 CTCACCAACTAGGGTACAAGGTA 58.908 47.826 0.00 0.00 43.89 3.08
2432 2529 2.904434 CTCACCAACTAGGGTACAAGGT 59.096 50.000 0.00 0.00 43.89 3.50
2433 2530 2.354805 GCTCACCAACTAGGGTACAAGG 60.355 54.545 0.00 0.00 43.89 3.61
2434 2531 2.567615 AGCTCACCAACTAGGGTACAAG 59.432 50.000 0.00 0.00 43.89 3.16
2435 2532 2.616524 AGCTCACCAACTAGGGTACAA 58.383 47.619 0.00 0.00 43.89 2.41
2436 2533 2.320681 AGCTCACCAACTAGGGTACA 57.679 50.000 0.00 0.00 43.89 2.90
2437 2534 3.118847 GGTAAGCTCACCAACTAGGGTAC 60.119 52.174 0.00 0.00 43.89 3.34
2438 2535 3.102204 GGTAAGCTCACCAACTAGGGTA 58.898 50.000 0.00 0.00 43.89 3.69
2439 2536 1.907255 GGTAAGCTCACCAACTAGGGT 59.093 52.381 0.00 0.00 43.89 4.34
2440 2537 1.209747 GGGTAAGCTCACCAACTAGGG 59.790 57.143 8.72 0.00 43.89 3.53
2441 2538 1.906574 TGGGTAAGCTCACCAACTAGG 59.093 52.381 8.72 0.00 40.65 3.02
2442 2539 2.301870 TGTGGGTAAGCTCACCAACTAG 59.698 50.000 15.07 0.00 45.29 2.57
2443 2540 2.331166 TGTGGGTAAGCTCACCAACTA 58.669 47.619 15.07 0.00 45.29 2.24
2444 2541 1.136828 TGTGGGTAAGCTCACCAACT 58.863 50.000 15.07 0.00 45.29 3.16
2445 2542 1.975660 TTGTGGGTAAGCTCACCAAC 58.024 50.000 6.62 6.62 45.29 3.77
2446 2543 2.107378 TCATTGTGGGTAAGCTCACCAA 59.893 45.455 8.72 0.00 45.29 3.67
2447 2544 1.702401 TCATTGTGGGTAAGCTCACCA 59.298 47.619 8.72 3.99 45.29 4.17
2448 2545 2.489938 TCATTGTGGGTAAGCTCACC 57.510 50.000 0.00 0.00 45.29 4.02
2449 2546 3.375299 GTGATCATTGTGGGTAAGCTCAC 59.625 47.826 0.00 0.00 46.06 3.51
2450 2547 3.008923 TGTGATCATTGTGGGTAAGCTCA 59.991 43.478 0.00 0.00 0.00 4.26
2451 2548 3.375299 GTGTGATCATTGTGGGTAAGCTC 59.625 47.826 0.00 0.00 0.00 4.09
2452 2549 3.347216 GTGTGATCATTGTGGGTAAGCT 58.653 45.455 0.00 0.00 0.00 3.74
2453 2550 2.423538 GGTGTGATCATTGTGGGTAAGC 59.576 50.000 0.00 0.00 0.00 3.09
2454 2551 3.016736 GGGTGTGATCATTGTGGGTAAG 58.983 50.000 0.00 0.00 0.00 2.34
2455 2552 2.376855 TGGGTGTGATCATTGTGGGTAA 59.623 45.455 0.00 0.00 0.00 2.85
2456 2553 1.988846 TGGGTGTGATCATTGTGGGTA 59.011 47.619 0.00 0.00 0.00 3.69
2457 2554 0.776810 TGGGTGTGATCATTGTGGGT 59.223 50.000 0.00 0.00 0.00 4.51
2458 2555 1.545582 GTTGGGTGTGATCATTGTGGG 59.454 52.381 0.00 0.00 0.00 4.61
2459 2556 2.030007 GTGTTGGGTGTGATCATTGTGG 60.030 50.000 0.00 0.00 0.00 4.17
2460 2557 2.030007 GGTGTTGGGTGTGATCATTGTG 60.030 50.000 0.00 0.00 0.00 3.33
2461 2558 2.238521 GGTGTTGGGTGTGATCATTGT 58.761 47.619 0.00 0.00 0.00 2.71
2462 2559 1.545582 GGGTGTTGGGTGTGATCATTG 59.454 52.381 0.00 0.00 0.00 2.82
2463 2560 1.428912 AGGGTGTTGGGTGTGATCATT 59.571 47.619 0.00 0.00 0.00 2.57
2464 2561 1.075601 AGGGTGTTGGGTGTGATCAT 58.924 50.000 0.00 0.00 0.00 2.45
2465 2562 1.735926 TAGGGTGTTGGGTGTGATCA 58.264 50.000 0.00 0.00 0.00 2.92
2466 2563 2.433436 GTTAGGGTGTTGGGTGTGATC 58.567 52.381 0.00 0.00 0.00 2.92
2467 2564 1.271163 CGTTAGGGTGTTGGGTGTGAT 60.271 52.381 0.00 0.00 0.00 3.06
2468 2565 0.107081 CGTTAGGGTGTTGGGTGTGA 59.893 55.000 0.00 0.00 0.00 3.58
2469 2566 1.512156 GCGTTAGGGTGTTGGGTGTG 61.512 60.000 0.00 0.00 0.00 3.82
2470 2567 1.228033 GCGTTAGGGTGTTGGGTGT 60.228 57.895 0.00 0.00 0.00 4.16
2471 2568 1.969589 GGCGTTAGGGTGTTGGGTG 60.970 63.158 0.00 0.00 0.00 4.61
2472 2569 2.433004 GGCGTTAGGGTGTTGGGT 59.567 61.111 0.00 0.00 0.00 4.51
2473 2570 1.969589 GTGGCGTTAGGGTGTTGGG 60.970 63.158 0.00 0.00 0.00 4.12
2474 2571 0.820074 TTGTGGCGTTAGGGTGTTGG 60.820 55.000 0.00 0.00 0.00 3.77
2475 2572 0.309612 GTTGTGGCGTTAGGGTGTTG 59.690 55.000 0.00 0.00 0.00 3.33
2476 2573 0.107116 TGTTGTGGCGTTAGGGTGTT 60.107 50.000 0.00 0.00 0.00 3.32
2477 2574 0.816421 GTGTTGTGGCGTTAGGGTGT 60.816 55.000 0.00 0.00 0.00 4.16
2478 2575 0.816018 TGTGTTGTGGCGTTAGGGTG 60.816 55.000 0.00 0.00 0.00 4.61
2479 2576 0.534203 CTGTGTTGTGGCGTTAGGGT 60.534 55.000 0.00 0.00 0.00 4.34
2480 2577 1.852067 GCTGTGTTGTGGCGTTAGGG 61.852 60.000 0.00 0.00 0.00 3.53
2481 2578 1.574428 GCTGTGTTGTGGCGTTAGG 59.426 57.895 0.00 0.00 0.00 2.69
2482 2579 1.204062 CGCTGTGTTGTGGCGTTAG 59.796 57.895 0.00 0.00 43.28 2.34
2483 2580 3.325072 CGCTGTGTTGTGGCGTTA 58.675 55.556 0.00 0.00 43.28 3.18
2487 2584 1.062587 GACATATCGCTGTGTTGTGGC 59.937 52.381 0.00 0.00 0.00 5.01
2488 2585 2.604914 GAGACATATCGCTGTGTTGTGG 59.395 50.000 0.00 0.00 0.00 4.17
2489 2586 2.604914 GGAGACATATCGCTGTGTTGTG 59.395 50.000 0.00 0.00 0.00 3.33
2490 2587 2.233676 TGGAGACATATCGCTGTGTTGT 59.766 45.455 0.00 0.00 33.40 3.32
2491 2588 2.892374 TGGAGACATATCGCTGTGTTG 58.108 47.619 0.00 0.00 33.40 3.33
2492 2589 3.262420 GTTGGAGACATATCGCTGTGTT 58.738 45.455 0.00 0.00 42.32 3.32
2493 2590 2.735444 CGTTGGAGACATATCGCTGTGT 60.735 50.000 0.00 0.00 42.32 3.72
2494 2591 1.854743 CGTTGGAGACATATCGCTGTG 59.145 52.381 0.00 0.00 42.32 3.66
2495 2592 1.476891 ACGTTGGAGACATATCGCTGT 59.523 47.619 0.00 0.00 42.32 4.40
2496 2593 2.209838 ACGTTGGAGACATATCGCTG 57.790 50.000 0.00 0.00 42.32 5.18
2497 2594 3.821600 AGATACGTTGGAGACATATCGCT 59.178 43.478 0.00 0.00 42.32 4.93
2498 2595 4.162096 AGATACGTTGGAGACATATCGC 57.838 45.455 0.00 0.00 42.32 4.58
2499 2596 6.237313 TGTAGATACGTTGGAGACATATCG 57.763 41.667 0.00 0.00 42.32 2.92
2500 2597 9.477484 AAATTGTAGATACGTTGGAGACATATC 57.523 33.333 0.00 0.00 42.32 1.63
2501 2598 9.832445 AAAATTGTAGATACGTTGGAGACATAT 57.168 29.630 0.00 0.00 42.32 1.78
2502 2599 9.661563 AAAAATTGTAGATACGTTGGAGACATA 57.338 29.630 0.00 0.00 42.32 2.29
2503 2600 8.561738 AAAAATTGTAGATACGTTGGAGACAT 57.438 30.769 0.00 0.00 42.32 3.06
2504 2601 7.972832 AAAAATTGTAGATACGTTGGAGACA 57.027 32.000 0.00 0.00 39.83 3.41
2593 2690 9.197306 GGTTAATAGGTTAGTCCCAAAAATCAT 57.803 33.333 0.00 0.00 36.75 2.45
2594 2691 8.395605 AGGTTAATAGGTTAGTCCCAAAAATCA 58.604 33.333 0.00 0.00 36.75 2.57
2595 2692 8.818622 AGGTTAATAGGTTAGTCCCAAAAATC 57.181 34.615 0.00 0.00 36.75 2.17
2596 2693 9.916360 CTAGGTTAATAGGTTAGTCCCAAAAAT 57.084 33.333 0.00 0.00 36.75 1.82
2597 2694 9.114938 TCTAGGTTAATAGGTTAGTCCCAAAAA 57.885 33.333 0.00 0.00 36.75 1.94
2598 2695 8.683776 TCTAGGTTAATAGGTTAGTCCCAAAA 57.316 34.615 0.00 0.00 36.75 2.44
2599 2696 7.147602 GCTCTAGGTTAATAGGTTAGTCCCAAA 60.148 40.741 0.00 0.00 36.75 3.28
2600 2697 6.325804 GCTCTAGGTTAATAGGTTAGTCCCAA 59.674 42.308 0.00 0.00 36.75 4.12
2601 2698 5.837438 GCTCTAGGTTAATAGGTTAGTCCCA 59.163 44.000 0.00 0.00 36.75 4.37
2602 2699 5.245751 GGCTCTAGGTTAATAGGTTAGTCCC 59.754 48.000 0.00 0.00 36.75 4.46
2603 2700 5.245751 GGGCTCTAGGTTAATAGGTTAGTCC 59.754 48.000 0.00 0.00 0.00 3.85
2604 2701 5.837438 TGGGCTCTAGGTTAATAGGTTAGTC 59.163 44.000 0.00 0.00 0.00 2.59
2605 2702 5.785123 TGGGCTCTAGGTTAATAGGTTAGT 58.215 41.667 0.00 0.00 0.00 2.24
2606 2703 5.839606 ACTGGGCTCTAGGTTAATAGGTTAG 59.160 44.000 0.00 0.00 0.00 2.34
2607 2704 5.601313 CACTGGGCTCTAGGTTAATAGGTTA 59.399 44.000 0.00 0.00 0.00 2.85
2608 2705 4.409247 CACTGGGCTCTAGGTTAATAGGTT 59.591 45.833 0.00 0.00 0.00 3.50
2609 2706 3.967987 CACTGGGCTCTAGGTTAATAGGT 59.032 47.826 0.00 0.00 0.00 3.08
2610 2707 3.244249 GCACTGGGCTCTAGGTTAATAGG 60.244 52.174 0.00 0.00 40.25 2.57
2611 2708 3.996480 GCACTGGGCTCTAGGTTAATAG 58.004 50.000 0.00 0.00 40.25 1.73
2624 2721 1.897560 AACAGAAACTAGCACTGGGC 58.102 50.000 13.34 0.00 45.30 5.36
2625 2722 4.918810 AAAAACAGAAACTAGCACTGGG 57.081 40.909 13.34 0.00 36.17 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.