>input_sequence_72286
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-----------------------------------------------------------CTACAAATAGTGCAATATTTA
TCATCCTCGATCACACAAAGAAATC-----CAAGGCACAACCACTATGAAGATCATTCTCCTCCTCCTCATCCTTGCACC
CCTCTGCGTGTCCGTCACCGGCCGCCTCAAGTGCCCCGGCGTGCCCTACAACGGTGCTGTGGCGACCTGCTACCATGGTT
GCGGCACGAAGCTCATCTACGACCTCTGCATCAAGACGATGCAGCAGGGCCACATCGACCTATCTCCGTCGCACAAAGAA
GAGACCACCGCGTACGCCATCCTCGTGCTAAGCGCCGCCGTGGAGTCCACGAGGACCACGTCGCACACGCTGACCTACCA
GCTCCAGAAGAACGCGTCCATCTCCGTCCAGGAAAGGGCGTTCTACGTGGCATGCCTTAACGACTACGTCGCGGCGTTGA
ACTCCCTCGACCACACCCTCGTTGTGATGCTGCCGAACTGCTTCTTTCAGGGGATCAACGACGACTACCTGAGCGCGTTG
GCTAGCCTGAATAGTTGCAGGGATCGGATCATAGGGCCGGTTATGTACACGTCGCCGTTGTACCCCCTGGTTTTGGCCGA
CCGAAACAAGGCCTTGCTGGCTTACTCGCTTGGCAAGTTGCTGTTATGAGTATCG-------------------------
-T---TAGATCTAGCGGCAACATGTAGACAGAAGAGCGATCA--------------------------------------
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>chr7D_1_TraesCS7D01G473100
CAGGCAAACTATAGCAGTTATGAGATTGGCATAAGTTTCCTAGAATCAAAAATTGTAGAAACATCAACTCCTACCTCCTG
CTCGTCCTCCATACTTGATCATCTGCTACAAAGTCCACACATCCATCAATTAGAAAAATAGAAACTGCTAAAGATTTACA
ATCTGTGGGTAGTTGATGTCAATGAGCGTCCGTAGCAAGTTCAGACGGTGTAGCCTAGGAGGACGTAGACGTTCCATCTG
CTCCATTATCTGCTCCAAGAGGACAGCTGCACCAAGAACTTTGTATCCTCAATGAAAACAACGCCGACCAATCTTCTTGA
AACTGTCGTACGTACACTTCCTCCGCTCCACCACTAAGCTTCAGTCTGATTCATCAACACGGCTAAAAAGTAAACCAGAT
TGGATCGCATAGGCTTTGGAGATTTAAAGGTTGAAGAGAAGGAATAAGGAATAGATTGGATTGGATCGTGAGGGGTGAGG
GAAGACTGCGTGAGGGTTCTTTGTTGGGTAAGGAAGATCGGTGCTGAAGTTTTGTAGGAATACGGTAGATGCTTTTTTTT
TAGATCGATTGTTTTTTTTTTTGGAAGGTACTCTAGATTGCTTTT-TTTTTTTACAATGAACCCTATGTTGGTTTTTTCT
TCGATCGCAAGGATTATATG-------CTACACCGGTATAATCCGGGCCCATTAGATTAACGGCCGGTAATTTATAATTA
ATGTGGTAATTTCTGGGAAGTCCAAAATTAGTATAGGTAGGTAGGTAGGTATAGGTATAGGTATA----GGTATAGATAG
ATAGATAGATATATA--GATAGATAGATGGATATTCTATATTTGGCATGTTATTAATTACACGCTAAATATGTTGAGTAT
TTGCCATTGGAGTAATATATGTTATTGGATTGACATTGTTAGATAGGTGATTATCCATATCTTTCATCAATTCAAACCAA
T-AAAAGATATGCATTTACAATGTCATTATTTGAAGGATTGAAGG--ACA--CATGCTACTACAAATAGTGCAATATTTA
TCATCCTCGATCACACAAAGAAATC-----CAAGGCACAACCACTATGAAGATCATTCTCCTCCTCCTCATCCTTGCACC
CCTCTGCGTGTCCGTCACCGGCCGCCTCAAGTGCCCCGGCGTGCCCTACAACGGTGCTGTGGCGACCTGCTACCATGGTT
GCGGCACGAAGCTCATCTACGACCTCTGCATCAAGACGATGCAGCAGGGCCACATCGACCTATCTCCGTCGCACAAAGAA
GAGACCACCGCGTACGCCATCCTCGTGCTAAGCGCCGCCGTGGAGTCCACGAGGACCACGTCGCACACGCTGACCTACCA
GCTCCAGAAGAACGCGTCCATCTCCGTCCAGGAAAGGGCGTTCTACGTGGCATGCCTTAACGACTACGTCGCGGCGTTGA
ACTCCCTCGACCACACCCTCGTTGTGATGCTGCCGAACTGCTTCTTTCAGGGGATCAACGACGACTACCTGAGCGCGTTG
GCTAGCCTGAATAGTTGCAGGGATCGGATCATAGGGCCGGTTATGTACACGTCGCCGTTGTACCCCCTGGTTTTGGCCGA
CCGAAACAAGGCCTTGCTGGCTTACTCGCTTGGCAAGTTGCTGTTATGAGTATCG-------------------------
-T---TAGATCTAGCGGCAACATGTAGACAGAAGAGCGATCAATAAATGCGGGAATTGTCTACACAAATTTACATGTGTG
TATGTACCACTTTGTGTGTCCTCTCTTGCTCTGCAT------------------------------------------CA
GTCAACTCATCCAAAAGTCCGAACCGATGGAGAGAAGCGGGCAATATATTTCAATACCCCCCTCGCGTCTAGGCTTACTT
AGTTCTTAGATGTGAGATTTATGTAGGCTGCATAATTTATTTTTAATATTAT-ATTGGCAAGGTCTTGAACTCAGGACCT
CCAGGCTCGGGTATAATATTGAATTCATACGCCAGCCAACTCATCTAAAACTCTGACGTGATGAAGAGAGGCGGACAATA
TGTTTCAACGAACATTTTGCAGTCGAGTGTGACACTCTTTGCGGCTCTCTCCTCTCCATGACTACTTCGGGGGTTATAGC
GAGTAGCGACACCATAACCTCTTTCAGGCACTTCAGTCCTATGATTTGAGGATTTGCAGCTTGTTCTAACACGACAGTAT
TGGCCTAGGAGCAACGGGGAAATGGAAGAATGCAGAATTGACCACAAAGAAACAACAAAGGGTGTGTTTGGTTTTAGTTG
TGAACAGTTTCTGCATTGCATACACTTCTCAACCCAGCCTGGTTGAGCAAAAACAGGCCCTAATGCGTCATCTACAAGTT
GTTTGGTTGCTTGCATCAAGGGTCCCTGCATTAGGTAATGCACAAGTGCACTTTGTTTGGTTGCCTGAATTGGCCCAAGC
GGCACATGGACAAGGTCTTTGGTTGCATATGGCGTAAATGGTGTGCTTACCTTGTACCCTAGTTGGTGAGCTTACCCACA
ATGATCACACCCAACACCCTAACGCCACAACACAGCGATATGTCTCCAACGTATCTACAATTTTTTATTGTTCCATGCTA
TTATATTATCCATCTAGGATGTTTTATATGCATTTATATGCTATTTTATATGATTTTTGGGACTAACCTATTAACCTAGA
GCCCAGTGCTAGTTTCTGTTTTTTTCCTTGTTTTTGAGTTCTACA
>chr7D_1
CAGGCAAACTATAGCAGTTATGAGATTGGCATAAGTTTCCTAGAATCAAAAATTGTAGAAACATCAACTCCTACCTCCTG
CTCGTCCTCCATACTTGATCATCTGCTACAAAGTCCACACATCCATCAATTAGAAAAATAGAAACTGCTGAAGATTTACA
ATCTGTGGGTAGTTGATGTCAATGAGCGTCCGTAGCAAGTTCAGACTGTGTAGCCTAGGAGGACGTAGACGTTCCATCTG
CTCCATTATCTGCTCCAAGAGGACAGCTGCACCAAGAACTCTGTATCCTCAATGAAAACAACGCCGACCAATCTTCTTGA
AACTGTTGTACGTACACTTCCTCCGCTCCACCACTAAGCTTCAGTCTGATTCATCAACACGGCTAAAAAGTAAACCAGAT
TGGATCGCATAGGCTTTGGAGATTTAAAGGTTGAAGAGAAGGAATAAGGAATAGATTGGATAGGATCGTGAGGGGTGAGG
GAAGACTGCGTGAGGGTTCTTTGTTGGGTAAGGAAGATCGGTGCTGAAGTTTTGTAGGAATACGGTAGATGCTTTTTTTT
-AGATCGATTG---TTTTTTTTGGAAGGTACTCTAGATTGCTTTTCTTTT---ACAATGAACCCTATGTTTGTTTTTTCT
TCGATCGCAAGGATTATATGGGTGGATCTACACCGTTATAATCCGGGCCCATTAGATTAACGGCCGGTAATTTCTAATTA
ATGTAGTAATTTCTGGGAAGTCCAAAATTAGCA--------TAGGTAGGTATAGGTATAGGTATATAGAGGTATAGATAG
ATAGATAAATAGATA-----------------------------------------------------------------
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>chr7D_1
CAGGCAAACTATAACAGTTATGAGATTGGCATAAGTTTCCTAGAATCAAAAATTGTAGAAACATCAACTCCTACCTCCTG
CTCGTCCTCCATAATTGATCATCTTCTACAAAGTCCACACATCCATCAATTAGAAAAATAGAAACTGCTGAAGATTTACA
ATCTGTGGGTAGTTGATGTCAATGAGCGTCTGTATCAAGTTCAGATGGTGTAGCCTAGGAGGACGTAGATGTTCCATCTG
CTCCATTATCTGCTCCAAGAGGACAGCTGCACCAAGAATTTTGTATCCTCAAAGAAAACAACGCCGACCAATCTTCTTGA
AACTGTCGTACGTACACTTCCTCCGCTCCACCACTAAGCTTCAGTCTGATTCATCAACACGGCTAAAAAGTAAACCAGAT
AGGACCGCATAGGCTTTGGAGATTTAAAGGTTGAAGAGAAGGAATAAGGAATAGATTGGATTGGATCGTGAGGGGTGAGG
GAAGACTGCGTGAGGGTTCTTTGTTGGGTAAGGAAGATCGGTGCTGAAGTTTTGTAGGAATACGGTAGATGCTTA-TTTT
-AGATCGATTG---T-TTTTTTGGAAGGTACTCTAGATTGCTTTT-TTTT---ACAGTGAACCCTATGTTGGTTTTTTCT
TCGATCGCAAGGATTATATGGGTGGATCTACACCGTTATAATTCGGGCCCATTAGATTAACGGTCGGTAATTTCTAATTA
ATGTGGTAATTTCTGGGAAGTCCAAAATTAGTA--------TAGGTATAG----------------------ATAGATAG
ATAGATAGATAGATATAGATAGATAGATAGATA-----------------------------------------------
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>chr7B_810
TAC-----------------------------------------------------------------------------
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--------------------------ATGGATATTCTATATTTGTCATGTTATTAATTACACGCTAAATA----------
----CATTGTAGCAATATAGGTTGTTGGATTCACACTATTTGAAAGGTGATTATCCATATCTTTCATCAATTCAAACCAA
T-AAAAGATATGCATTTACAATACG---ATTTGAAGGATTGAAGG--ACA--CAT---ACTACAAATAGTGCAATATTTT
GCGTCCTCGATCGCACAGAGAACATCTAATTAAGTTAGAGCCACAATGAAGATCATT---CTCCTCCTCATCCTTGCACC
CCTCTGCGTGTCCGTCACCGGCCGCCTCAAGTGCCCCGGCGTGCCGTACAACGGCGCAGTGGCGACCTGCTACCATGGTT
GCGGCACGAAGCTCATCTACGACCTCTGCATCAAGACCATGCAGCAGGGCCACATCGACCTATCTCCGTCGCACAAAGAA
GAGACCACCGCGTACGCCATCCTCGTCTTAAGCGCCGCCGTGGCGTCCACGGATGCCACGTCACACACGCTGACCTACCA
GCTCCAGAAGAACGCGTCCATCTCCGTTCAGGAAAGGGCGTTCTACGGGGCGTGCCTCACCGACTACGTCGCGGCGTTGA
ACTCCCTCTACCACACCCTCGATGTGATGCTGCCGAACTGCTTCTTTAAGGGGATCAACGACGACTACCTGAGCGCGTTG
GCCAGCCTGAATAGTTGCAGGGATCGGTTCATAGGGCCGGTTATGTACACGTCGCCGGTGTACCCCTTGGTTTTGGCCGA
CCGAAACAAGGCCTTGCTGGCTTACTCGCTTGGCAAGTTGCTATTATGAGTACCG-------------------------
-TCATTAGATCCAGCGGCGGCATGTAGACCGATGAGCGATCAATAAATGAGGGGATTGTCCACACATATTTACATGTTTG
TA------------------------------------------------------------------------------
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>chr7A_813
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--------------------------ATGGATATTCTATATTTGGCATGTTATTAATTACACGCTAAATATGGAT-----
-----------------------------TTGACAATGTTGGATAGATGATTATCCATATCTTTAATCAATTCAAACCAA
T-AAAAGATATGCATTTACAATGAC---ATTTGAAGGATTAAAGAGCACA--CAT---GCTACAAATAGTGCAATATTTT
GCATCCTCGATGGCACGGAGAAATC-----CAAGGTAGAGCCGCAATGAAGATCATTCTCCTCCTCCTCATCCTTGCACC
CCTCGGCGTGTCCGTCACCGCCCGCCTCAAGTGCCCCGGCGTGCCATACAACGGCGCTGTGGCGACCTGCTACCATGGTT
GCGGCACGAAGCTCATCTACGACCTCTGCATCAAGACAATGCAACAGGGCCACATCGACCTATCTCCGTCGCACAAAGAA
GAGACCACCGCGTACGCCATCCTCGTGCTAAGCGCCGCCGTGGAGTCCACGAGGACCACGTCGCACACGCTGACCTACCA
GCTCCAGAAGAACGCGTCCATCTCCGTCCAGGAAAGGGCATTCTACGGGGCGTGCCTCACTGACTACGTCGCGGCGTTGA
ACTCCCTCGACCACACCCTCGTCGTGATGCTGCCGAACTGCTTCTTTCAGGGGATCAACGACGACTACCTCAGCGCGCTG
GCCAGCCTGAATAGTTGTAGGGACCGGTTCATAGGGCCGGCTATGTACACGTCGCCGGTGTACCCCTTGGTTTTGGCCGA
CCGAAACAAGGCATTGCTGGCTTACTCGCTTGGCAAGTTGTTATTATGAGCATCCCGTAAAAAAAGTTATAATTATGAGT
ATCGTTAGATCCAGCAGCGGCATGTAGCCCGAACAACGATCAATAAATGCGGGAATTGTCTACACAAATTTACATGTGTG
TATGTACCACTTTGTGTGTCCTTTCTTGCTCTGCAT--------------------------------------------
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>chr7B_822
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-----------------------------------CTATATTTGGCATGTTATTAATTACACACTAAATATGTTGAGTAC
TTGCCATTGGAGTAATATATGTTGTTGGATTGACACCGTTAGATAGGTGATTATCCATATCTTTAATCAATTCAAACCAA
TAAAAAGATATGCATTTACAATGTCATTATTTGAAGGATTGAAGGACACATGCAT---GCTACAAATAGTGCAATATTTT
GCATCCTCGATCCCACAGAGAAGTG-----TAAGGCACAACCACTATGAAGATCATTCTCCTCCTCCTCATCCTTGCACC
CCTCTGAGTGTCGGTCACCGGCCGCCTCAAGTGCCCCGGCGTGCCGTACAACGGCGCTGTGGCGACCTGCTACCATGGTT
GCGGCACCAAGCTCATCTACGATCTCTGCATCAAGACGATGCAGCAAGGCCACATCAACCTATCTCCGTCGCACAAAGAG
GAGACCACCGCATACGCCATCCTCGTGCTAAGCGCCGCCGTGGAGTCCACGAGGACCACGTCGCACACGCTGACCTACCA
GCTCCAGAAGAACGCGTCCATCTCCGTCCAGGAAAGGGCGTTCTACGGGGCGTGCCTCACCGACTACGTCGCGGCGTTGA
ACTCCCTCTACCACACCCTCGTCGTGATGCTGCCGAACTGCTTCTTTCAGGGGATCAACGACGACTACCTGAGCGCGTTG
GCCAGCGTGAATAGTTGCAGGGATCGGTTCATAGGGCCGGCTATGTACATGTCGCCGGTGTACCCCTTGGTTTTGGCCGA
CCGAAACAAGGCCTTGCTGGCTTACTCGCTTGGCAAGTTGCTGTTATGAGTACCG-------------------------
----TTAGATCTAGCGGCAACATGTAGACCGAAGAGGGATCAATAAATGCGGGAATTGTCTACACATATTTACATGTGTG
TATGTACCCTTTTGTGTGTCCTCTCTTGGTCTGCATCTGTAGTTGTTGGCGGGTGAAACGAGTATTGAATTCATGCTTCA
GTCAACTCATCCAAAAGTCCGAACTGATGGAAAAAAACGGGCAATATATTTCAACACTCCCCTCGCGTCTAGGCTTACTT
AGTTTTTAGACGTGAGATTTATGTAGGCTGCAGAATTTATTTTTTAATACTGCATTGGCAAGGTCTTGAACTCAAGACCT
CCAGGCTCAGGTATAATATTGAATTCATGCTTCAGCTAATTCATCCAAAATTCCAAACTGATGAAGAAAGACGGCCAATA
TGTTTCAACGAACATTTTGGAGTCGAGTGTGACACTCTTTGCGA--CTCTCCTCTCCATGACTACTTCGGGGGTTATAGC
GAGTAGCGTCTCCATAACCTCTTTCAGGGACTTTAGTCCTATGATTTGAGGATTTGGAGCTTGTCCTGACACGAGAGTGT
TGGCCTAGGAGCAACGGGGAAATGGAAGAATACAGAATTGACCACAAAGAAACAACAAAGTGTGATGT------------
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>SNPs
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S----------SSS------------------------------------SSS---------------------------
-----------------------------------S-------------------------------------S------
---------------------------------SSSSSSSS---------------------------------------
-----------S-------------------------------------------------------------------S
-----------------------S-----------S--------------------------------------------
-------------------------------------------------------SSS---------------------S
S-----------S----S--------------------------------------------------------------
---------------------------------------------S--------S-------------------------
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-----------------------------------------------S---S-----S-S--------------------
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--S------------------------S-----------------------------S--------S-------------
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-----------------------------S--------------------------------------------------
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------------------------S------S-S--S-----------------S--S----------------------
----S-----S---------------------S-----------S-SSSSSS----------------------S-----
--------S-------------------S-SS----S--S-----S----S--SS-SS---------S--S---S-----
-------------------S-----------------------SSS----------------------------------
--------S-S-----------------S----S----------------------S-------S--S------S---S-
-------------------------------S----------------------------S---SSS-SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1017
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-----------------------------------TGAAGGATTGAAGGACACATGC-----------------------
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>reverse_2371
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--------------------------------------------------AAACAGGCCCTAATGCGTCA----------
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