Multiple sequence alignment - TraesCS7D01G421800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G421800 chr7D 100.000 2658 0 0 1 2658 541380329 541377672 0.000000e+00 4909
1 TraesCS7D01G421800 chr7D 90.943 265 24 0 2204 2468 392074878 392075142 9.050000e-95 357
2 TraesCS7D01G421800 chr7B 94.220 1661 67 12 553 2205 585462330 585460691 0.000000e+00 2508
3 TraesCS7D01G421800 chr7B 89.330 403 32 4 9 404 585463036 585462638 1.840000e-136 496
4 TraesCS7D01G421800 chr7A 96.859 1369 33 6 553 1920 624688379 624687020 0.000000e+00 2281
5 TraesCS7D01G421800 chr7A 87.895 380 35 4 33 405 624727158 624726783 1.130000e-118 436
6 TraesCS7D01G421800 chr7A 90.977 266 22 2 2203 2468 515171091 515170828 9.050000e-95 357
7 TraesCS7D01G421800 chr7A 96.124 129 3 1 428 554 593548784 593548912 2.680000e-50 209
8 TraesCS7D01G421800 chr7A 88.889 162 18 0 1988 2149 624687012 624686851 1.610000e-47 200
9 TraesCS7D01G421800 chr5B 92.222 270 20 1 2199 2468 35776432 35776700 5.370000e-102 381
10 TraesCS7D01G421800 chr5B 96.094 128 3 1 428 553 501965201 501965074 9.640000e-50 207
11 TraesCS7D01G421800 chr5B 96.774 124 2 1 433 554 506317757 506317634 3.470000e-49 206
12 TraesCS7D01G421800 chr3B 91.698 265 21 1 2204 2468 17707978 17707715 1.500000e-97 366
13 TraesCS7D01G421800 chr3B 90.977 266 23 1 2203 2468 772187482 772187218 9.050000e-95 357
14 TraesCS7D01G421800 chr3B 90.977 266 23 1 2203 2468 772261005 772260741 9.050000e-95 357
15 TraesCS7D01G421800 chr3B 90.110 273 24 3 2200 2471 821230420 821230150 4.210000e-93 351
16 TraesCS7D01G421800 chr4A 90.672 268 24 1 2204 2471 597820334 597820068 3.250000e-94 355
17 TraesCS7D01G421800 chr2D 90.406 271 25 1 2200 2470 366629110 366629379 3.250000e-94 355
18 TraesCS7D01G421800 chr6A 96.899 129 2 1 428 554 553945616 553945488 5.760000e-52 215
19 TraesCS7D01G421800 chr5A 94.074 135 6 1 422 554 649614604 649614738 1.250000e-48 204
20 TraesCS7D01G421800 chr6D 92.361 144 8 2 422 563 379089479 379089621 4.490000e-48 202
21 TraesCS7D01G421800 chr6D 94.574 129 5 1 428 554 17236472 17236344 5.800000e-47 198
22 TraesCS7D01G421800 chr1D 95.276 127 5 1 428 554 326014587 326014462 1.610000e-47 200
23 TraesCS7D01G421800 chr3A 94.574 129 5 1 428 554 489568868 489568740 5.800000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G421800 chr7D 541377672 541380329 2657 True 4909.0 4909 100.000 1 2658 1 chr7D.!!$R1 2657
1 TraesCS7D01G421800 chr7B 585460691 585463036 2345 True 1502.0 2508 91.775 9 2205 2 chr7B.!!$R1 2196
2 TraesCS7D01G421800 chr7A 624686851 624688379 1528 True 1240.5 2281 92.874 553 2149 2 chr7A.!!$R3 1596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 846 0.037232 CGGAGAGGAACCCAACACTC 60.037 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2524 2828 0.320771 ATCAATAGCCGCCGTCATCC 60.321 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.610174 TGCCTCGCTCTCACAGATTT 59.390 50.000 0.00 0.00 0.00 2.17
20 21 1.005340 GCCTCGCTCTCACAGATTTG 58.995 55.000 0.00 0.00 0.00 2.32
22 23 1.405256 CCTCGCTCTCACAGATTTGCT 60.405 52.381 0.00 0.00 0.00 3.91
23 24 2.159184 CCTCGCTCTCACAGATTTGCTA 60.159 50.000 0.00 0.00 0.00 3.49
69 70 4.843728 TGTAAAGGAGGTGAAGCATTAGG 58.156 43.478 0.00 0.00 0.00 2.69
107 108 6.717084 GCTTTCTATTTGGTAGGGCTCATTAT 59.283 38.462 0.00 0.00 0.00 1.28
181 182 2.135933 GAGTACACCGCTATCATTGGC 58.864 52.381 0.00 0.00 0.00 4.52
189 190 0.304705 GCTATCATTGGCCGTGTTCG 59.695 55.000 0.00 0.00 0.00 3.95
229 230 2.036098 TGGATGTTGGCAGGGCAG 59.964 61.111 0.00 0.00 0.00 4.85
247 253 2.511600 CATTCGAGGTCCGGTGGC 60.512 66.667 0.00 0.00 39.14 5.01
262 268 2.141448 TGGCCCGGTTGTGTGAGTA 61.141 57.895 0.00 0.00 0.00 2.59
266 272 2.007049 GCCCGGTTGTGTGAGTATCTG 61.007 57.143 0.00 0.00 34.92 2.90
292 298 2.021722 GCTTTGTGCTTGACGGTGA 58.978 52.632 0.00 0.00 38.95 4.02
296 302 1.960417 TTGTGCTTGACGGTGATTGA 58.040 45.000 0.00 0.00 0.00 2.57
297 303 2.183478 TGTGCTTGACGGTGATTGAT 57.817 45.000 0.00 0.00 0.00 2.57
298 304 2.076100 TGTGCTTGACGGTGATTGATC 58.924 47.619 0.00 0.00 0.00 2.92
329 335 2.071778 TGGGCATTGCTTCCCTTATC 57.928 50.000 8.82 0.00 43.04 1.75
361 369 6.706270 ACTTTTGAAAATCTCGCTCTCAGTTA 59.294 34.615 0.00 0.00 0.00 2.24
373 381 4.439700 CGCTCTCAGTTAATTCGGGTAGAA 60.440 45.833 0.00 0.00 43.93 2.10
394 402 6.183347 AGAAGTCATGCTAGGTTATTTGCTT 58.817 36.000 0.00 0.00 0.00 3.91
404 412 3.054361 AGGTTATTTGCTTGGATCCTCGT 60.054 43.478 14.23 0.00 0.00 4.18
405 413 3.694566 GGTTATTTGCTTGGATCCTCGTT 59.305 43.478 14.23 0.00 0.00 3.85
420 716 3.521937 TCCTCGTTTCCCTCATAAATGGT 59.478 43.478 0.00 0.00 0.00 3.55
428 724 3.455910 TCCCTCATAAATGGTGACTCTGG 59.544 47.826 0.00 0.00 0.00 3.86
429 725 3.209410 CCTCATAAATGGTGACTCTGGC 58.791 50.000 0.00 0.00 0.00 4.85
430 726 3.209410 CTCATAAATGGTGACTCTGGCC 58.791 50.000 0.00 0.00 0.00 5.36
431 727 2.092429 TCATAAATGGTGACTCTGGCCC 60.092 50.000 0.00 0.00 0.00 5.80
432 728 0.623723 TAAATGGTGACTCTGGCCCC 59.376 55.000 0.00 0.00 0.00 5.80
433 729 2.484287 AAATGGTGACTCTGGCCCCG 62.484 60.000 0.00 0.00 0.00 5.73
434 730 4.954118 TGGTGACTCTGGCCCCGT 62.954 66.667 0.00 0.00 0.00 5.28
435 731 3.637273 GGTGACTCTGGCCCCGTT 61.637 66.667 0.00 0.00 0.00 4.44
436 732 2.047179 GTGACTCTGGCCCCGTTC 60.047 66.667 0.00 0.00 0.00 3.95
437 733 3.691342 TGACTCTGGCCCCGTTCG 61.691 66.667 0.00 0.00 0.00 3.95
438 734 3.692406 GACTCTGGCCCCGTTCGT 61.692 66.667 0.00 0.00 0.00 3.85
439 735 2.283388 ACTCTGGCCCCGTTCGTA 60.283 61.111 0.00 0.00 0.00 3.43
440 736 1.880819 GACTCTGGCCCCGTTCGTAA 61.881 60.000 0.00 0.00 0.00 3.18
441 737 1.262640 ACTCTGGCCCCGTTCGTAAT 61.263 55.000 0.00 0.00 0.00 1.89
442 738 0.529992 CTCTGGCCCCGTTCGTAATC 60.530 60.000 0.00 0.00 0.00 1.75
443 739 0.974010 TCTGGCCCCGTTCGTAATCT 60.974 55.000 0.00 0.00 0.00 2.40
444 740 0.529992 CTGGCCCCGTTCGTAATCTC 60.530 60.000 0.00 0.00 0.00 2.75
445 741 0.974010 TGGCCCCGTTCGTAATCTCT 60.974 55.000 0.00 0.00 0.00 3.10
446 742 0.249363 GGCCCCGTTCGTAATCTCTC 60.249 60.000 0.00 0.00 0.00 3.20
447 743 0.745468 GCCCCGTTCGTAATCTCTCT 59.255 55.000 0.00 0.00 0.00 3.10
448 744 1.536284 GCCCCGTTCGTAATCTCTCTG 60.536 57.143 0.00 0.00 0.00 3.35
449 745 1.536284 CCCCGTTCGTAATCTCTCTGC 60.536 57.143 0.00 0.00 0.00 4.26
450 746 1.405821 CCCGTTCGTAATCTCTCTGCT 59.594 52.381 0.00 0.00 0.00 4.24
451 747 2.541999 CCCGTTCGTAATCTCTCTGCTC 60.542 54.545 0.00 0.00 0.00 4.26
452 748 2.541999 CCGTTCGTAATCTCTCTGCTCC 60.542 54.545 0.00 0.00 0.00 4.70
453 749 2.541999 CGTTCGTAATCTCTCTGCTCCC 60.542 54.545 0.00 0.00 0.00 4.30
454 750 2.427453 GTTCGTAATCTCTCTGCTCCCA 59.573 50.000 0.00 0.00 0.00 4.37
455 751 2.025155 TCGTAATCTCTCTGCTCCCAC 58.975 52.381 0.00 0.00 0.00 4.61
456 752 2.028130 CGTAATCTCTCTGCTCCCACT 58.972 52.381 0.00 0.00 0.00 4.00
457 753 2.034053 CGTAATCTCTCTGCTCCCACTC 59.966 54.545 0.00 0.00 0.00 3.51
458 754 1.494960 AATCTCTCTGCTCCCACTCC 58.505 55.000 0.00 0.00 0.00 3.85
459 755 0.754957 ATCTCTCTGCTCCCACTCCG 60.755 60.000 0.00 0.00 0.00 4.63
460 756 3.071206 TCTCTGCTCCCACTCCGC 61.071 66.667 0.00 0.00 0.00 5.54
461 757 4.504916 CTCTGCTCCCACTCCGCG 62.505 72.222 0.00 0.00 0.00 6.46
472 768 3.691342 CTCCGCGGAGTTGGTGGA 61.691 66.667 40.77 12.14 41.55 4.02
473 769 3.691342 TCCGCGGAGTTGGTGGAG 61.691 66.667 27.28 0.00 39.06 3.86
475 771 4.379243 CGCGGAGTTGGTGGAGCT 62.379 66.667 0.00 0.00 0.00 4.09
476 772 2.435059 GCGGAGTTGGTGGAGCTC 60.435 66.667 4.71 4.71 0.00 4.09
477 773 2.125912 CGGAGTTGGTGGAGCTCG 60.126 66.667 7.83 0.00 0.00 5.03
478 774 2.266055 GGAGTTGGTGGAGCTCGG 59.734 66.667 7.83 0.00 0.00 4.63
479 775 2.584391 GGAGTTGGTGGAGCTCGGT 61.584 63.158 7.83 0.00 0.00 4.69
480 776 1.079750 GAGTTGGTGGAGCTCGGTC 60.080 63.158 7.83 0.18 0.00 4.79
481 777 1.534235 AGTTGGTGGAGCTCGGTCT 60.534 57.895 7.83 0.00 0.00 3.85
482 778 1.122019 AGTTGGTGGAGCTCGGTCTT 61.122 55.000 7.83 0.00 0.00 3.01
483 779 0.670854 GTTGGTGGAGCTCGGTCTTC 60.671 60.000 7.83 0.00 0.00 2.87
484 780 2.154798 TTGGTGGAGCTCGGTCTTCG 62.155 60.000 7.83 0.00 40.90 3.79
485 781 2.507324 GTGGAGCTCGGTCTTCGC 60.507 66.667 7.83 0.00 39.05 4.70
486 782 2.989253 TGGAGCTCGGTCTTCGCA 60.989 61.111 7.83 0.00 39.05 5.10
487 783 2.202676 GGAGCTCGGTCTTCGCAG 60.203 66.667 7.83 0.00 39.05 5.18
488 784 2.883253 GAGCTCGGTCTTCGCAGC 60.883 66.667 0.00 0.00 40.06 5.25
489 785 3.349481 GAGCTCGGTCTTCGCAGCT 62.349 63.158 0.00 10.36 46.66 4.24
490 786 2.883253 GCTCGGTCTTCGCAGCTC 60.883 66.667 0.00 0.00 38.25 4.09
491 787 2.202676 CTCGGTCTTCGCAGCTCC 60.203 66.667 0.00 0.00 39.05 4.70
492 788 4.116328 TCGGTCTTCGCAGCTCCG 62.116 66.667 10.80 10.80 38.06 4.63
493 789 4.421479 CGGTCTTCGCAGCTCCGT 62.421 66.667 0.00 0.00 34.61 4.69
494 790 2.048127 GGTCTTCGCAGCTCCGTT 60.048 61.111 0.00 0.00 0.00 4.44
495 791 1.214589 GGTCTTCGCAGCTCCGTTA 59.785 57.895 0.00 0.00 0.00 3.18
496 792 0.389426 GGTCTTCGCAGCTCCGTTAA 60.389 55.000 0.00 0.00 0.00 2.01
497 793 1.425412 GTCTTCGCAGCTCCGTTAAA 58.575 50.000 0.00 0.00 0.00 1.52
498 794 1.390463 GTCTTCGCAGCTCCGTTAAAG 59.610 52.381 0.00 0.00 0.00 1.85
499 795 1.000506 TCTTCGCAGCTCCGTTAAAGT 59.999 47.619 0.00 0.00 0.00 2.66
500 796 1.126846 CTTCGCAGCTCCGTTAAAGTG 59.873 52.381 0.00 0.00 0.00 3.16
501 797 0.315886 TCGCAGCTCCGTTAAAGTGA 59.684 50.000 0.00 0.00 0.00 3.41
502 798 0.716108 CGCAGCTCCGTTAAAGTGAG 59.284 55.000 0.00 3.65 0.00 3.51
503 799 1.079503 GCAGCTCCGTTAAAGTGAGG 58.920 55.000 8.25 0.00 0.00 3.86
504 800 1.608283 GCAGCTCCGTTAAAGTGAGGT 60.608 52.381 6.02 6.02 37.33 3.85
505 801 2.338500 CAGCTCCGTTAAAGTGAGGTC 58.662 52.381 8.01 0.00 34.83 3.85
506 802 1.275573 AGCTCCGTTAAAGTGAGGTCC 59.724 52.381 6.02 0.00 31.64 4.46
507 803 1.992170 CTCCGTTAAAGTGAGGTCCG 58.008 55.000 0.00 0.00 0.00 4.79
508 804 0.037975 TCCGTTAAAGTGAGGTCCGC 60.038 55.000 0.00 0.00 0.00 5.54
509 805 0.037605 CCGTTAAAGTGAGGTCCGCT 60.038 55.000 0.00 0.00 37.17 5.52
510 806 1.347320 CGTTAAAGTGAGGTCCGCTC 58.653 55.000 0.00 0.00 33.81 5.03
511 807 1.723220 GTTAAAGTGAGGTCCGCTCC 58.277 55.000 0.00 0.00 33.81 4.70
512 808 0.245539 TTAAAGTGAGGTCCGCTCCG 59.754 55.000 0.00 0.00 33.81 4.63
527 823 1.475403 CTCCGGGAGCAGAGTTAAGA 58.525 55.000 11.83 0.00 0.00 2.10
528 824 1.407258 CTCCGGGAGCAGAGTTAAGAG 59.593 57.143 11.83 0.00 0.00 2.85
529 825 1.005569 TCCGGGAGCAGAGTTAAGAGA 59.994 52.381 0.00 0.00 0.00 3.10
530 826 1.407258 CCGGGAGCAGAGTTAAGAGAG 59.593 57.143 0.00 0.00 0.00 3.20
531 827 1.202359 CGGGAGCAGAGTTAAGAGAGC 60.202 57.143 0.00 0.00 0.00 4.09
532 828 1.202359 GGGAGCAGAGTTAAGAGAGCG 60.202 57.143 0.00 0.00 0.00 5.03
533 829 1.202359 GGAGCAGAGTTAAGAGAGCGG 60.202 57.143 0.00 0.00 0.00 5.52
534 830 1.746220 GAGCAGAGTTAAGAGAGCGGA 59.254 52.381 0.00 0.00 0.00 5.54
535 831 1.748493 AGCAGAGTTAAGAGAGCGGAG 59.252 52.381 0.00 0.00 0.00 4.63
536 832 1.746220 GCAGAGTTAAGAGAGCGGAGA 59.254 52.381 0.00 0.00 0.00 3.71
537 833 2.223479 GCAGAGTTAAGAGAGCGGAGAG 60.223 54.545 0.00 0.00 0.00 3.20
538 834 2.357637 CAGAGTTAAGAGAGCGGAGAGG 59.642 54.545 0.00 0.00 0.00 3.69
539 835 2.240160 AGAGTTAAGAGAGCGGAGAGGA 59.760 50.000 0.00 0.00 0.00 3.71
540 836 3.018149 GAGTTAAGAGAGCGGAGAGGAA 58.982 50.000 0.00 0.00 0.00 3.36
541 837 2.756207 AGTTAAGAGAGCGGAGAGGAAC 59.244 50.000 0.00 0.00 0.00 3.62
542 838 1.765230 TAAGAGAGCGGAGAGGAACC 58.235 55.000 0.00 0.00 0.00 3.62
543 839 0.973496 AAGAGAGCGGAGAGGAACCC 60.973 60.000 0.00 0.00 0.00 4.11
544 840 1.682684 GAGAGCGGAGAGGAACCCA 60.683 63.158 0.00 0.00 0.00 4.51
545 841 1.229209 AGAGCGGAGAGGAACCCAA 60.229 57.895 0.00 0.00 0.00 4.12
546 842 1.079057 GAGCGGAGAGGAACCCAAC 60.079 63.158 0.00 0.00 0.00 3.77
547 843 1.827399 GAGCGGAGAGGAACCCAACA 61.827 60.000 0.00 0.00 0.00 3.33
548 844 1.671379 GCGGAGAGGAACCCAACAC 60.671 63.158 0.00 0.00 0.00 3.32
549 845 2.058675 CGGAGAGGAACCCAACACT 58.941 57.895 0.00 0.00 0.00 3.55
550 846 0.037232 CGGAGAGGAACCCAACACTC 60.037 60.000 0.00 0.00 0.00 3.51
551 847 0.325272 GGAGAGGAACCCAACACTCC 59.675 60.000 0.00 0.00 37.37 3.85
611 907 2.047844 GCAGAGCTCTTGCACCGA 60.048 61.111 24.34 0.00 42.74 4.69
615 911 1.196354 CAGAGCTCTTGCACCGAAAAG 59.804 52.381 15.27 0.00 42.74 2.27
669 965 1.069022 CAGATTCAACCGTGTGCCAAG 60.069 52.381 0.00 0.00 0.00 3.61
670 966 0.387239 GATTCAACCGTGTGCCAAGC 60.387 55.000 0.00 0.00 0.00 4.01
671 967 2.128853 ATTCAACCGTGTGCCAAGCG 62.129 55.000 0.00 0.00 0.00 4.68
695 991 1.122849 GCTGCATGTTTGTGTGTTCG 58.877 50.000 0.00 0.00 0.00 3.95
699 995 2.164422 TGCATGTTTGTGTGTTCGGAAA 59.836 40.909 0.00 0.00 0.00 3.13
704 1000 4.872664 TGTTTGTGTGTTCGGAAAAAGTT 58.127 34.783 0.00 0.00 0.00 2.66
742 1038 4.808364 ACAAGCGCTCAAAAGATATCTCTC 59.192 41.667 12.06 0.00 0.00 3.20
863 1159 1.602323 AAAACGCGGCAATCCCTGA 60.602 52.632 12.47 0.00 0.00 3.86
1173 1469 4.216472 GGAAACCTCGAGCTGAAAAATCTT 59.784 41.667 6.99 0.00 0.00 2.40
1323 1619 2.671396 CGGTCCAAGGATAAACAACTCG 59.329 50.000 0.00 0.00 0.00 4.18
1926 2222 6.597280 GCATTTCTCTTTCATCTTACAGAGGT 59.403 38.462 0.00 0.00 34.61 3.85
1932 2228 3.334583 TCATCTTACAGAGGTGCCAAC 57.665 47.619 0.00 0.00 36.38 3.77
1966 2262 8.980481 AAAAATCTCGTCCCATAATGTAAGAT 57.020 30.769 0.00 0.00 0.00 2.40
2065 2362 9.621629 TGTATAGAAAAATAAATGACATCCCGT 57.378 29.630 0.00 0.00 0.00 5.28
2066 2363 9.878599 GTATAGAAAAATAAATGACATCCCGTG 57.121 33.333 0.00 0.00 0.00 4.94
2069 2366 7.891561 AGAAAAATAAATGACATCCCGTGAAA 58.108 30.769 0.00 0.00 0.00 2.69
2070 2367 8.364142 AGAAAAATAAATGACATCCCGTGAAAA 58.636 29.630 0.00 0.00 0.00 2.29
2071 2368 8.894768 AAAAATAAATGACATCCCGTGAAAAA 57.105 26.923 0.00 0.00 0.00 1.94
2205 2509 2.038387 ACACGGCCCTTTGATGATAC 57.962 50.000 0.00 0.00 0.00 2.24
2206 2510 1.559682 ACACGGCCCTTTGATGATACT 59.440 47.619 0.00 0.00 0.00 2.12
2207 2511 2.213499 CACGGCCCTTTGATGATACTC 58.787 52.381 0.00 0.00 0.00 2.59
2208 2512 1.141053 ACGGCCCTTTGATGATACTCC 59.859 52.381 0.00 0.00 0.00 3.85
2209 2513 1.543429 CGGCCCTTTGATGATACTCCC 60.543 57.143 0.00 0.00 0.00 4.30
2210 2514 1.777272 GGCCCTTTGATGATACTCCCT 59.223 52.381 0.00 0.00 0.00 4.20
2211 2515 2.224646 GGCCCTTTGATGATACTCCCTC 60.225 54.545 0.00 0.00 0.00 4.30
2212 2516 2.224646 GCCCTTTGATGATACTCCCTCC 60.225 54.545 0.00 0.00 0.00 4.30
2213 2517 2.037772 CCCTTTGATGATACTCCCTCCG 59.962 54.545 0.00 0.00 0.00 4.63
2214 2518 2.700897 CCTTTGATGATACTCCCTCCGT 59.299 50.000 0.00 0.00 0.00 4.69
2215 2519 3.243907 CCTTTGATGATACTCCCTCCGTC 60.244 52.174 0.00 0.00 0.00 4.79
2216 2520 1.996798 TGATGATACTCCCTCCGTCC 58.003 55.000 0.00 0.00 0.00 4.79
2217 2521 1.499438 TGATGATACTCCCTCCGTCCT 59.501 52.381 0.00 0.00 0.00 3.85
2218 2522 2.091278 TGATGATACTCCCTCCGTCCTT 60.091 50.000 0.00 0.00 0.00 3.36
2219 2523 1.776662 TGATACTCCCTCCGTCCTTG 58.223 55.000 0.00 0.00 0.00 3.61
2220 2524 1.286849 TGATACTCCCTCCGTCCTTGA 59.713 52.381 0.00 0.00 0.00 3.02
2221 2525 2.291996 TGATACTCCCTCCGTCCTTGAA 60.292 50.000 0.00 0.00 0.00 2.69
2222 2526 2.314071 TACTCCCTCCGTCCTTGAAA 57.686 50.000 0.00 0.00 0.00 2.69
2223 2527 0.977395 ACTCCCTCCGTCCTTGAAAG 59.023 55.000 0.00 0.00 0.00 2.62
2224 2528 1.267121 CTCCCTCCGTCCTTGAAAGA 58.733 55.000 0.00 0.00 0.00 2.52
2225 2529 1.205893 CTCCCTCCGTCCTTGAAAGAG 59.794 57.143 0.00 0.00 0.00 2.85
2226 2530 0.977395 CCCTCCGTCCTTGAAAGAGT 59.023 55.000 0.00 0.00 0.00 3.24
2227 2531 1.338200 CCCTCCGTCCTTGAAAGAGTG 60.338 57.143 0.00 0.00 0.00 3.51
2228 2532 1.344763 CCTCCGTCCTTGAAAGAGTGT 59.655 52.381 0.00 0.00 0.00 3.55
2229 2533 2.561419 CCTCCGTCCTTGAAAGAGTGTA 59.439 50.000 0.00 0.00 0.00 2.90
2230 2534 3.367498 CCTCCGTCCTTGAAAGAGTGTAG 60.367 52.174 0.00 0.00 0.00 2.74
2231 2535 3.228453 TCCGTCCTTGAAAGAGTGTAGT 58.772 45.455 0.00 0.00 0.00 2.73
2232 2536 3.640029 TCCGTCCTTGAAAGAGTGTAGTT 59.360 43.478 0.00 0.00 0.00 2.24
2233 2537 4.100498 TCCGTCCTTGAAAGAGTGTAGTTT 59.900 41.667 0.00 0.00 0.00 2.66
2234 2538 4.448060 CCGTCCTTGAAAGAGTGTAGTTTC 59.552 45.833 0.00 0.00 33.94 2.78
2235 2539 5.047847 CGTCCTTGAAAGAGTGTAGTTTCA 58.952 41.667 0.00 0.00 40.16 2.69
2236 2540 5.522460 CGTCCTTGAAAGAGTGTAGTTTCAA 59.478 40.000 9.27 9.27 45.78 2.69
2237 2541 6.509677 CGTCCTTGAAAGAGTGTAGTTTCAAC 60.510 42.308 6.22 0.00 44.07 3.18
2238 2542 6.539103 GTCCTTGAAAGAGTGTAGTTTCAACT 59.461 38.462 6.22 0.00 44.07 3.16
2239 2543 7.065923 GTCCTTGAAAGAGTGTAGTTTCAACTT 59.934 37.037 6.22 0.00 44.07 2.66
2240 2544 7.280205 TCCTTGAAAGAGTGTAGTTTCAACTTC 59.720 37.037 6.22 0.00 44.07 3.01
2241 2545 6.583912 TGAAAGAGTGTAGTTTCAACTTCG 57.416 37.500 0.00 0.00 39.22 3.79
2242 2546 6.103997 TGAAAGAGTGTAGTTTCAACTTCGT 58.896 36.000 0.00 0.00 39.22 3.85
2243 2547 6.592607 TGAAAGAGTGTAGTTTCAACTTCGTT 59.407 34.615 0.00 0.00 39.22 3.85
2244 2548 5.968387 AGAGTGTAGTTTCAACTTCGTTG 57.032 39.130 0.00 0.45 43.99 4.10
2245 2549 4.809426 AGAGTGTAGTTTCAACTTCGTTGG 59.191 41.667 6.86 0.00 42.99 3.77
2246 2550 4.761975 AGTGTAGTTTCAACTTCGTTGGA 58.238 39.130 6.86 0.00 42.99 3.53
2247 2551 4.809426 AGTGTAGTTTCAACTTCGTTGGAG 59.191 41.667 6.86 0.00 42.99 3.86
2248 2552 4.025145 GTGTAGTTTCAACTTCGTTGGAGG 60.025 45.833 6.86 0.00 42.99 4.30
2249 2553 2.572290 AGTTTCAACTTCGTTGGAGGG 58.428 47.619 6.86 0.00 42.99 4.30
2250 2554 2.092592 AGTTTCAACTTCGTTGGAGGGT 60.093 45.455 6.86 0.00 42.99 4.34
2251 2555 2.249844 TTCAACTTCGTTGGAGGGTC 57.750 50.000 6.86 0.00 42.99 4.46
2252 2556 1.124780 TCAACTTCGTTGGAGGGTCA 58.875 50.000 6.86 0.00 42.99 4.02
2253 2557 1.487142 TCAACTTCGTTGGAGGGTCAA 59.513 47.619 6.86 0.00 42.99 3.18
2254 2558 2.105821 TCAACTTCGTTGGAGGGTCAAT 59.894 45.455 6.86 0.00 42.99 2.57
2255 2559 2.474410 ACTTCGTTGGAGGGTCAATC 57.526 50.000 0.00 0.00 0.00 2.67
2256 2560 1.978580 ACTTCGTTGGAGGGTCAATCT 59.021 47.619 0.00 0.00 0.00 2.40
2257 2561 3.170717 ACTTCGTTGGAGGGTCAATCTA 58.829 45.455 0.00 0.00 0.00 1.98
2258 2562 3.775316 ACTTCGTTGGAGGGTCAATCTAT 59.225 43.478 0.00 0.00 0.00 1.98
2259 2563 4.141914 ACTTCGTTGGAGGGTCAATCTATC 60.142 45.833 0.00 0.00 0.00 2.08
2260 2564 3.643237 TCGTTGGAGGGTCAATCTATCT 58.357 45.455 0.00 0.00 0.00 1.98
2261 2565 4.030913 TCGTTGGAGGGTCAATCTATCTT 58.969 43.478 0.00 0.00 0.00 2.40
2262 2566 5.205821 TCGTTGGAGGGTCAATCTATCTTA 58.794 41.667 0.00 0.00 0.00 2.10
2263 2567 5.659525 TCGTTGGAGGGTCAATCTATCTTAA 59.340 40.000 0.00 0.00 0.00 1.85
2264 2568 6.155565 TCGTTGGAGGGTCAATCTATCTTAAA 59.844 38.462 0.00 0.00 0.00 1.52
2265 2569 6.480320 CGTTGGAGGGTCAATCTATCTTAAAG 59.520 42.308 0.00 0.00 0.00 1.85
2266 2570 7.339482 GTTGGAGGGTCAATCTATCTTAAAGT 58.661 38.462 0.00 0.00 0.00 2.66
2267 2571 7.510675 TGGAGGGTCAATCTATCTTAAAGTT 57.489 36.000 0.00 0.00 0.00 2.66
2268 2572 7.928873 TGGAGGGTCAATCTATCTTAAAGTTT 58.071 34.615 0.00 0.00 0.00 2.66
2269 2573 7.829211 TGGAGGGTCAATCTATCTTAAAGTTTG 59.171 37.037 0.00 0.00 0.00 2.93
2270 2574 8.047310 GGAGGGTCAATCTATCTTAAAGTTTGA 58.953 37.037 0.00 0.00 32.78 2.69
2271 2575 8.794335 AGGGTCAATCTATCTTAAAGTTTGAC 57.206 34.615 15.29 15.29 44.98 3.18
2274 2578 8.475331 GTCAATCTATCTTAAAGTTTGACCGA 57.525 34.615 13.78 0.00 42.51 4.69
2275 2579 8.596380 GTCAATCTATCTTAAAGTTTGACCGAG 58.404 37.037 13.78 0.00 42.51 4.63
2276 2580 7.277981 TCAATCTATCTTAAAGTTTGACCGAGC 59.722 37.037 0.00 0.00 31.14 5.03
2277 2581 6.282199 TCTATCTTAAAGTTTGACCGAGCT 57.718 37.500 0.00 0.00 0.00 4.09
2278 2582 6.698380 TCTATCTTAAAGTTTGACCGAGCTT 58.302 36.000 0.00 0.00 0.00 3.74
2279 2583 7.833786 TCTATCTTAAAGTTTGACCGAGCTTA 58.166 34.615 0.00 0.00 0.00 3.09
2280 2584 8.475639 TCTATCTTAAAGTTTGACCGAGCTTAT 58.524 33.333 0.00 0.00 0.00 1.73
2281 2585 6.721571 TCTTAAAGTTTGACCGAGCTTATG 57.278 37.500 0.00 0.00 0.00 1.90
2282 2586 3.831715 AAAGTTTGACCGAGCTTATGC 57.168 42.857 0.00 0.00 40.05 3.14
2283 2587 2.472695 AGTTTGACCGAGCTTATGCA 57.527 45.000 3.16 0.00 42.74 3.96
2284 2588 2.778299 AGTTTGACCGAGCTTATGCAA 58.222 42.857 3.16 0.00 42.74 4.08
2285 2589 3.146066 AGTTTGACCGAGCTTATGCAAA 58.854 40.909 3.16 0.00 42.74 3.68
2286 2590 3.568007 AGTTTGACCGAGCTTATGCAAAA 59.432 39.130 3.16 0.00 42.74 2.44
2287 2591 4.037446 AGTTTGACCGAGCTTATGCAAAAA 59.963 37.500 3.16 0.00 42.74 1.94
2288 2592 4.782019 TTGACCGAGCTTATGCAAAAAT 57.218 36.364 3.16 0.00 42.74 1.82
2289 2593 5.888691 TTGACCGAGCTTATGCAAAAATA 57.111 34.783 3.16 0.00 42.74 1.40
2290 2594 6.449635 TTGACCGAGCTTATGCAAAAATAT 57.550 33.333 3.16 0.00 42.74 1.28
2291 2595 5.820131 TGACCGAGCTTATGCAAAAATATG 58.180 37.500 3.16 0.00 42.74 1.78
2292 2596 5.356751 TGACCGAGCTTATGCAAAAATATGT 59.643 36.000 3.16 0.00 42.74 2.29
2293 2597 5.821204 ACCGAGCTTATGCAAAAATATGTC 58.179 37.500 3.16 0.00 42.74 3.06
2294 2598 5.356751 ACCGAGCTTATGCAAAAATATGTCA 59.643 36.000 3.16 0.00 42.74 3.58
2295 2599 6.127758 ACCGAGCTTATGCAAAAATATGTCAA 60.128 34.615 3.16 0.00 42.74 3.18
2296 2600 6.919662 CCGAGCTTATGCAAAAATATGTCAAT 59.080 34.615 3.16 0.00 42.74 2.57
2297 2601 8.075574 CCGAGCTTATGCAAAAATATGTCAATA 58.924 33.333 3.16 0.00 42.74 1.90
2298 2602 9.616634 CGAGCTTATGCAAAAATATGTCAATAT 57.383 29.630 3.16 0.00 42.74 1.28
2315 2619 9.874205 ATGTCAATATTTGTGAAACCAAATAGG 57.126 29.630 10.86 6.96 45.47 2.57
2367 2671 8.352201 TGAATGTAATGCTACTAATTTGATGGC 58.648 33.333 0.00 0.00 0.00 4.40
2368 2672 7.822161 ATGTAATGCTACTAATTTGATGGCA 57.178 32.000 0.00 0.00 0.00 4.92
2369 2673 7.822161 TGTAATGCTACTAATTTGATGGCAT 57.178 32.000 0.00 0.00 40.04 4.40
2370 2674 8.916628 TGTAATGCTACTAATTTGATGGCATA 57.083 30.769 0.00 0.00 37.85 3.14
2371 2675 9.519191 TGTAATGCTACTAATTTGATGGCATAT 57.481 29.630 0.00 0.00 37.85 1.78
2375 2679 9.690913 ATGCTACTAATTTGATGGCATATATGT 57.309 29.630 14.14 0.00 37.20 2.29
2376 2680 9.519191 TGCTACTAATTTGATGGCATATATGTT 57.481 29.630 14.14 1.06 0.00 2.71
2377 2681 9.778993 GCTACTAATTTGATGGCATATATGTTG 57.221 33.333 14.14 0.00 0.00 3.33
2379 2683 8.710749 ACTAATTTGATGGCATATATGTTGGT 57.289 30.769 14.14 3.64 0.00 3.67
2380 2684 8.796475 ACTAATTTGATGGCATATATGTTGGTC 58.204 33.333 14.14 8.16 0.00 4.02
2381 2685 7.844493 AATTTGATGGCATATATGTTGGTCT 57.156 32.000 14.14 0.00 0.00 3.85
2382 2686 8.938801 AATTTGATGGCATATATGTTGGTCTA 57.061 30.769 14.14 3.03 0.00 2.59
2383 2687 9.537852 AATTTGATGGCATATATGTTGGTCTAT 57.462 29.630 14.14 0.81 0.00 1.98
2384 2688 8.938801 TTTGATGGCATATATGTTGGTCTATT 57.061 30.769 14.14 0.00 0.00 1.73
2438 2742 9.936759 AAAGTTTGACTTTTCAATAAAGTTGGA 57.063 25.926 4.58 0.00 45.38 3.53
2439 2743 9.936759 AAGTTTGACTTTTCAATAAAGTTGGAA 57.063 25.926 4.58 0.00 41.50 3.53
2440 2744 9.586435 AGTTTGACTTTTCAATAAAGTTGGAAG 57.414 29.630 4.58 0.00 41.50 3.46
2441 2745 9.366216 GTTTGACTTTTCAATAAAGTTGGAAGT 57.634 29.630 4.58 8.88 41.50 3.01
2444 2748 9.179909 TGACTTTTCAATAAAGTTGGAAGTACA 57.820 29.630 4.58 7.49 40.27 2.90
2445 2749 9.447040 GACTTTTCAATAAAGTTGGAAGTACAC 57.553 33.333 4.58 0.00 40.27 2.90
2446 2750 9.185680 ACTTTTCAATAAAGTTGGAAGTACACT 57.814 29.630 0.00 0.00 37.18 3.55
2447 2751 9.665264 CTTTTCAATAAAGTTGGAAGTACACTC 57.335 33.333 0.00 0.00 0.00 3.51
2448 2752 8.974060 TTTCAATAAAGTTGGAAGTACACTCT 57.026 30.769 0.00 0.00 0.00 3.24
2449 2753 8.974060 TTCAATAAAGTTGGAAGTACACTCTT 57.026 30.769 0.00 0.00 0.00 2.85
2450 2754 8.974060 TCAATAAAGTTGGAAGTACACTCTTT 57.026 30.769 0.00 0.00 33.02 2.52
2451 2755 9.403583 TCAATAAAGTTGGAAGTACACTCTTTT 57.596 29.630 0.00 0.00 31.77 2.27
2456 2760 9.457436 AAAGTTGGAAGTACACTCTTTTAAGAA 57.543 29.630 0.00 0.00 34.03 2.52
2457 2761 9.628500 AAGTTGGAAGTACACTCTTTTAAGAAT 57.372 29.630 0.00 0.00 34.03 2.40
2462 2766 9.589111 GGAAGTACACTCTTTTAAGAATAGAGG 57.411 37.037 10.23 3.91 39.73 3.69
2463 2767 9.589111 GAAGTACACTCTTTTAAGAATAGAGGG 57.411 37.037 7.21 7.21 43.49 4.30
2464 2768 8.896722 AGTACACTCTTTTAAGAATAGAGGGA 57.103 34.615 13.67 0.00 41.02 4.20
2465 2769 8.973182 AGTACACTCTTTTAAGAATAGAGGGAG 58.027 37.037 13.67 5.65 41.02 4.30
2466 2770 7.800300 ACACTCTTTTAAGAATAGAGGGAGT 57.200 36.000 13.67 6.12 41.02 3.85
2467 2771 8.896722 ACACTCTTTTAAGAATAGAGGGAGTA 57.103 34.615 13.67 0.00 41.02 2.59
2468 2772 9.322769 ACACTCTTTTAAGAATAGAGGGAGTAA 57.677 33.333 13.67 0.00 41.02 2.24
2469 2773 9.810545 CACTCTTTTAAGAATAGAGGGAGTAAG 57.189 37.037 10.23 0.00 41.02 2.34
2470 2774 9.549984 ACTCTTTTAAGAATAGAGGGAGTAAGT 57.450 33.333 10.23 0.00 39.73 2.24
2478 2782 8.943594 AGAATAGAGGGAGTAAGTAATGTAGG 57.056 38.462 0.00 0.00 0.00 3.18
2479 2783 7.452189 AGAATAGAGGGAGTAAGTAATGTAGGC 59.548 40.741 0.00 0.00 0.00 3.93
2480 2784 4.880164 AGAGGGAGTAAGTAATGTAGGCA 58.120 43.478 0.00 0.00 0.00 4.75
2481 2785 5.278061 AGAGGGAGTAAGTAATGTAGGCAA 58.722 41.667 0.00 0.00 0.00 4.52
2482 2786 5.128991 AGAGGGAGTAAGTAATGTAGGCAAC 59.871 44.000 0.00 0.00 0.00 4.17
2483 2787 4.781087 AGGGAGTAAGTAATGTAGGCAACA 59.219 41.667 0.00 0.00 43.86 3.33
2510 2814 9.871175 TTGGTTGTCAGTAGTATATATACTGGA 57.129 33.333 28.32 20.82 46.62 3.86
2522 2826 8.687242 AGTATATATACTGGATGTTCATCGTGG 58.313 37.037 22.01 2.92 41.77 4.94
2523 2827 5.808366 ATATACTGGATGTTCATCGTGGT 57.192 39.130 6.70 7.55 0.00 4.16
2524 2828 2.099141 ACTGGATGTTCATCGTGGTG 57.901 50.000 6.70 0.00 0.00 4.17
2525 2829 1.339055 ACTGGATGTTCATCGTGGTGG 60.339 52.381 6.70 0.00 0.00 4.61
2526 2830 0.980423 TGGATGTTCATCGTGGTGGA 59.020 50.000 6.70 0.00 0.00 4.02
2527 2831 1.559219 TGGATGTTCATCGTGGTGGAT 59.441 47.619 6.70 0.00 0.00 3.41
2528 2832 1.942657 GGATGTTCATCGTGGTGGATG 59.057 52.381 6.70 0.00 44.10 3.51
2532 2836 1.515487 TCATCGTGGTGGATGACGG 59.485 57.895 1.35 0.00 45.82 4.79
2533 2837 2.173669 CATCGTGGTGGATGACGGC 61.174 63.158 0.00 0.00 45.27 5.68
2534 2838 3.716539 ATCGTGGTGGATGACGGCG 62.717 63.158 4.80 4.80 36.23 6.46
2538 2842 3.845259 GGTGGATGACGGCGGCTA 61.845 66.667 16.45 0.00 0.00 3.93
2539 2843 2.421739 GTGGATGACGGCGGCTAT 59.578 61.111 16.45 5.74 0.00 2.97
2540 2844 1.227556 GTGGATGACGGCGGCTATT 60.228 57.895 16.45 0.00 0.00 1.73
2541 2845 1.227527 TGGATGACGGCGGCTATTG 60.228 57.895 16.45 0.00 0.00 1.90
2542 2846 1.069090 GGATGACGGCGGCTATTGA 59.931 57.895 16.45 0.00 0.00 2.57
2543 2847 0.320771 GGATGACGGCGGCTATTGAT 60.321 55.000 16.45 0.00 0.00 2.57
2544 2848 1.067142 GGATGACGGCGGCTATTGATA 60.067 52.381 16.45 0.00 0.00 2.15
2545 2849 2.418746 GGATGACGGCGGCTATTGATAT 60.419 50.000 16.45 0.00 0.00 1.63
2546 2850 2.831685 TGACGGCGGCTATTGATATT 57.168 45.000 16.45 0.00 0.00 1.28
2547 2851 3.120321 TGACGGCGGCTATTGATATTT 57.880 42.857 16.45 0.00 0.00 1.40
2548 2852 2.805671 TGACGGCGGCTATTGATATTTG 59.194 45.455 16.45 0.00 0.00 2.32
2549 2853 3.064207 GACGGCGGCTATTGATATTTGA 58.936 45.455 13.24 0.00 0.00 2.69
2550 2854 3.472652 ACGGCGGCTATTGATATTTGAA 58.527 40.909 13.24 0.00 0.00 2.69
2551 2855 3.880490 ACGGCGGCTATTGATATTTGAAA 59.120 39.130 13.24 0.00 0.00 2.69
2552 2856 4.336993 ACGGCGGCTATTGATATTTGAAAA 59.663 37.500 13.24 0.00 0.00 2.29
2553 2857 5.163602 ACGGCGGCTATTGATATTTGAAAAA 60.164 36.000 13.24 0.00 0.00 1.94
2554 2858 5.399301 CGGCGGCTATTGATATTTGAAAAAG 59.601 40.000 7.61 0.00 0.00 2.27
2555 2859 5.691754 GGCGGCTATTGATATTTGAAAAAGG 59.308 40.000 0.00 0.00 0.00 3.11
2556 2860 6.460953 GGCGGCTATTGATATTTGAAAAAGGA 60.461 38.462 0.00 0.00 0.00 3.36
2557 2861 6.978080 GCGGCTATTGATATTTGAAAAAGGAA 59.022 34.615 0.00 0.00 0.00 3.36
2558 2862 7.043391 GCGGCTATTGATATTTGAAAAAGGAAC 60.043 37.037 0.00 0.00 0.00 3.62
2559 2863 7.973388 CGGCTATTGATATTTGAAAAAGGAACA 59.027 33.333 0.00 0.00 0.00 3.18
2560 2864 9.087424 GGCTATTGATATTTGAAAAAGGAACAC 57.913 33.333 0.00 0.00 0.00 3.32
2561 2865 9.638239 GCTATTGATATTTGAAAAAGGAACACA 57.362 29.630 0.00 0.00 0.00 3.72
2564 2868 9.829507 ATTGATATTTGAAAAAGGAACACAACA 57.170 25.926 0.00 0.00 0.00 3.33
2565 2869 9.658799 TTGATATTTGAAAAAGGAACACAACAA 57.341 25.926 0.00 0.00 0.00 2.83
2566 2870 9.658799 TGATATTTGAAAAAGGAACACAACAAA 57.341 25.926 0.00 0.00 0.00 2.83
2623 2927 7.876936 AATGCATGCTGATATAGGATAAAGG 57.123 36.000 20.33 0.00 34.95 3.11
2624 2928 5.188434 TGCATGCTGATATAGGATAAAGGC 58.812 41.667 20.33 0.00 34.95 4.35
2625 2929 5.188434 GCATGCTGATATAGGATAAAGGCA 58.812 41.667 11.37 0.00 34.95 4.75
2626 2930 5.649395 GCATGCTGATATAGGATAAAGGCAA 59.351 40.000 11.37 0.00 34.95 4.52
2627 2931 6.151648 GCATGCTGATATAGGATAAAGGCAAA 59.848 38.462 11.37 0.00 34.95 3.68
2628 2932 7.147949 GCATGCTGATATAGGATAAAGGCAAAT 60.148 37.037 11.37 0.00 34.95 2.32
2629 2933 8.746530 CATGCTGATATAGGATAAAGGCAAATT 58.253 33.333 0.00 0.00 34.95 1.82
2630 2934 8.114331 TGCTGATATAGGATAAAGGCAAATTG 57.886 34.615 0.00 0.00 0.00 2.32
2631 2935 7.944000 TGCTGATATAGGATAAAGGCAAATTGA 59.056 33.333 0.00 0.00 0.00 2.57
2632 2936 8.796475 GCTGATATAGGATAAAGGCAAATTGAA 58.204 33.333 0.00 0.00 0.00 2.69
2634 2938 9.639563 TGATATAGGATAAAGGCAAATTGAACA 57.360 29.630 0.00 0.00 0.00 3.18
2637 2941 5.793817 AGGATAAAGGCAAATTGAACAACC 58.206 37.500 0.00 0.00 0.00 3.77
2638 2942 5.306678 AGGATAAAGGCAAATTGAACAACCA 59.693 36.000 0.00 0.00 0.00 3.67
2639 2943 5.994668 GGATAAAGGCAAATTGAACAACCAA 59.005 36.000 0.00 0.00 0.00 3.67
2640 2944 6.073276 GGATAAAGGCAAATTGAACAACCAAC 60.073 38.462 0.00 0.00 0.00 3.77
2641 2945 2.820330 AGGCAAATTGAACAACCAACG 58.180 42.857 0.00 0.00 0.00 4.10
2642 2946 1.864082 GGCAAATTGAACAACCAACGG 59.136 47.619 0.00 0.00 0.00 4.44
2643 2947 2.545731 GCAAATTGAACAACCAACGGT 58.454 42.857 0.00 0.00 37.65 4.83
2645 2949 3.000825 GCAAATTGAACAACCAACGGTTC 59.999 43.478 0.00 0.00 43.05 3.62
2646 2950 4.177026 CAAATTGAACAACCAACGGTTCA 58.823 39.130 3.31 3.31 43.05 3.18
2649 2953 1.066303 TGAACAACCAACGGTTCATGC 59.934 47.619 3.31 0.00 43.05 4.06
2650 2954 1.336755 GAACAACCAACGGTTCATGCT 59.663 47.619 0.00 0.00 43.05 3.79
2651 2955 0.951558 ACAACCAACGGTTCATGCTC 59.048 50.000 0.00 0.00 43.05 4.26
2652 2956 0.110238 CAACCAACGGTTCATGCTCG 60.110 55.000 0.00 0.00 43.05 5.03
2653 2957 0.250124 AACCAACGGTTCATGCTCGA 60.250 50.000 8.66 0.00 43.05 4.04
2654 2958 0.036388 ACCAACGGTTCATGCTCGAT 60.036 50.000 8.66 0.00 27.29 3.59
2655 2959 0.652592 CCAACGGTTCATGCTCGATC 59.347 55.000 8.66 0.00 0.00 3.69
2656 2960 1.358877 CAACGGTTCATGCTCGATCA 58.641 50.000 8.66 0.00 0.00 2.92
2657 2961 1.935873 CAACGGTTCATGCTCGATCAT 59.064 47.619 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.610174 AAATCTGTGAGAGCGAGGCA 59.390 50.000 0.00 0.00 0.00 4.75
1 2 1.005340 CAAATCTGTGAGAGCGAGGC 58.995 55.000 0.00 0.00 0.00 4.70
2 3 1.005340 GCAAATCTGTGAGAGCGAGG 58.995 55.000 0.00 0.00 0.00 4.63
3 4 2.007360 AGCAAATCTGTGAGAGCGAG 57.993 50.000 0.00 0.00 0.00 5.03
4 5 2.159184 CCTAGCAAATCTGTGAGAGCGA 60.159 50.000 0.00 0.00 0.00 4.93
5 6 2.200067 CCTAGCAAATCTGTGAGAGCG 58.800 52.381 0.00 0.00 0.00 5.03
6 7 2.093235 ACCCTAGCAAATCTGTGAGAGC 60.093 50.000 0.00 0.00 0.00 4.09
7 8 3.902881 ACCCTAGCAAATCTGTGAGAG 57.097 47.619 0.00 0.00 0.00 3.20
16 17 1.064389 GGGAGCTCAACCCTAGCAAAT 60.064 52.381 17.19 0.00 43.65 2.32
19 20 3.727387 GGGAGCTCAACCCTAGCA 58.273 61.111 17.19 0.00 43.65 3.49
79 80 4.527944 AGCCCTACCAAATAGAAAGCTTC 58.472 43.478 0.00 0.00 31.37 3.86
88 89 4.595781 ACCGATAATGAGCCCTACCAAATA 59.404 41.667 0.00 0.00 0.00 1.40
89 90 3.394606 ACCGATAATGAGCCCTACCAAAT 59.605 43.478 0.00 0.00 0.00 2.32
96 97 2.301296 CTCATCACCGATAATGAGCCCT 59.699 50.000 7.60 0.00 41.62 5.19
107 108 1.899617 TGAGCATGCTCATCACCGA 59.100 52.632 39.86 20.29 46.80 4.69
130 131 1.999634 ATCCAAGGAGGGGGCGAATG 62.000 60.000 0.00 0.00 38.24 2.67
136 137 2.040412 GCTAATGTATCCAAGGAGGGGG 59.960 54.545 0.00 0.00 38.24 5.40
137 138 2.289694 CGCTAATGTATCCAAGGAGGGG 60.290 54.545 0.00 0.00 38.24 4.79
158 159 4.051922 CCAATGATAGCGGTGTACTCTTC 58.948 47.826 0.00 0.00 0.00 2.87
167 168 1.523711 CACGGCCAATGATAGCGGT 60.524 57.895 2.24 0.00 42.49 5.68
181 182 3.686128 CTCTAACTCTGATCGAACACGG 58.314 50.000 0.00 0.00 0.00 4.94
189 190 1.407258 ACCGCAGCTCTAACTCTGATC 59.593 52.381 0.00 0.00 32.26 2.92
229 230 2.511600 CCACCGGACCTCGAATGC 60.512 66.667 9.46 0.00 42.43 3.56
247 253 1.405526 CCAGATACTCACACAACCGGG 60.406 57.143 6.32 0.00 0.00 5.73
253 259 1.262417 TTCGCCCAGATACTCACACA 58.738 50.000 0.00 0.00 0.00 3.72
254 260 2.271800 CTTTCGCCCAGATACTCACAC 58.728 52.381 0.00 0.00 0.00 3.82
262 268 0.883833 CACAAAGCTTTCGCCCAGAT 59.116 50.000 9.23 0.00 36.60 2.90
292 298 3.698040 GCCCAAGAACTGACATGATCAAT 59.302 43.478 0.00 0.00 36.69 2.57
296 302 2.885135 TGCCCAAGAACTGACATGAT 57.115 45.000 0.00 0.00 0.00 2.45
297 303 2.821378 CAATGCCCAAGAACTGACATGA 59.179 45.455 0.00 0.00 0.00 3.07
298 304 2.673043 GCAATGCCCAAGAACTGACATG 60.673 50.000 0.00 0.00 0.00 3.21
329 335 3.908382 CGAGATTTTCAAAAGTGCCTTCG 59.092 43.478 0.00 0.00 0.00 3.79
351 359 4.650754 TCTACCCGAATTAACTGAGAGC 57.349 45.455 0.00 0.00 0.00 4.09
361 369 3.914426 AGCATGACTTCTACCCGAATT 57.086 42.857 0.00 0.00 0.00 2.17
373 381 4.641989 CCAAGCAAATAACCTAGCATGACT 59.358 41.667 0.00 0.00 0.00 3.41
394 402 1.879575 ATGAGGGAAACGAGGATCCA 58.120 50.000 15.82 0.00 37.46 3.41
404 412 5.500234 CAGAGTCACCATTTATGAGGGAAA 58.500 41.667 0.00 0.00 0.00 3.13
405 413 4.080356 CCAGAGTCACCATTTATGAGGGAA 60.080 45.833 0.00 0.00 0.00 3.97
420 716 3.691342 CGAACGGGGCCAGAGTCA 61.691 66.667 11.67 0.00 0.00 3.41
428 724 0.745468 AGAGAGATTACGAACGGGGC 59.255 55.000 0.00 0.00 0.00 5.80
429 725 1.536284 GCAGAGAGATTACGAACGGGG 60.536 57.143 0.00 0.00 0.00 5.73
430 726 1.405821 AGCAGAGAGATTACGAACGGG 59.594 52.381 0.00 0.00 0.00 5.28
431 727 2.541999 GGAGCAGAGAGATTACGAACGG 60.542 54.545 0.00 0.00 0.00 4.44
432 728 2.541999 GGGAGCAGAGAGATTACGAACG 60.542 54.545 0.00 0.00 0.00 3.95
433 729 2.427453 TGGGAGCAGAGAGATTACGAAC 59.573 50.000 0.00 0.00 0.00 3.95
434 730 2.427453 GTGGGAGCAGAGAGATTACGAA 59.573 50.000 0.00 0.00 0.00 3.85
435 731 2.025155 GTGGGAGCAGAGAGATTACGA 58.975 52.381 0.00 0.00 0.00 3.43
436 732 2.028130 AGTGGGAGCAGAGAGATTACG 58.972 52.381 0.00 0.00 0.00 3.18
437 733 2.364002 GGAGTGGGAGCAGAGAGATTAC 59.636 54.545 0.00 0.00 0.00 1.89
438 734 2.672098 GGAGTGGGAGCAGAGAGATTA 58.328 52.381 0.00 0.00 0.00 1.75
439 735 1.494960 GGAGTGGGAGCAGAGAGATT 58.505 55.000 0.00 0.00 0.00 2.40
440 736 0.754957 CGGAGTGGGAGCAGAGAGAT 60.755 60.000 0.00 0.00 0.00 2.75
441 737 1.379176 CGGAGTGGGAGCAGAGAGA 60.379 63.158 0.00 0.00 0.00 3.10
442 738 3.074999 GCGGAGTGGGAGCAGAGAG 62.075 68.421 0.00 0.00 0.00 3.20
443 739 3.071206 GCGGAGTGGGAGCAGAGA 61.071 66.667 0.00 0.00 0.00 3.10
444 740 4.504916 CGCGGAGTGGGAGCAGAG 62.505 72.222 0.00 0.00 0.00 3.35
455 751 3.649277 CTCCACCAACTCCGCGGAG 62.649 68.421 45.26 45.26 46.91 4.63
456 752 3.691342 CTCCACCAACTCCGCGGA 61.691 66.667 29.03 29.03 0.00 5.54
458 754 4.379243 AGCTCCACCAACTCCGCG 62.379 66.667 0.00 0.00 0.00 6.46
459 755 2.435059 GAGCTCCACCAACTCCGC 60.435 66.667 0.87 0.00 0.00 5.54
460 756 2.125912 CGAGCTCCACCAACTCCG 60.126 66.667 8.47 0.00 0.00 4.63
461 757 2.266055 CCGAGCTCCACCAACTCC 59.734 66.667 8.47 0.00 0.00 3.85
462 758 1.079750 GACCGAGCTCCACCAACTC 60.080 63.158 8.47 0.00 0.00 3.01
463 759 1.122019 AAGACCGAGCTCCACCAACT 61.122 55.000 8.47 0.00 0.00 3.16
464 760 0.670854 GAAGACCGAGCTCCACCAAC 60.671 60.000 8.47 0.00 0.00 3.77
465 761 1.671742 GAAGACCGAGCTCCACCAA 59.328 57.895 8.47 0.00 0.00 3.67
466 762 2.636412 CGAAGACCGAGCTCCACCA 61.636 63.158 8.47 0.00 41.76 4.17
467 763 2.182030 CGAAGACCGAGCTCCACC 59.818 66.667 8.47 0.00 41.76 4.61
468 764 2.507324 GCGAAGACCGAGCTCCAC 60.507 66.667 8.47 0.00 41.76 4.02
469 765 2.989253 TGCGAAGACCGAGCTCCA 60.989 61.111 8.47 0.00 41.76 3.86
470 766 2.202676 CTGCGAAGACCGAGCTCC 60.203 66.667 8.47 0.00 41.76 4.70
471 767 2.883253 GCTGCGAAGACCGAGCTC 60.883 66.667 2.73 2.73 41.76 4.09
472 768 3.349481 GAGCTGCGAAGACCGAGCT 62.349 63.158 0.00 0.00 46.47 4.09
473 769 2.883253 GAGCTGCGAAGACCGAGC 60.883 66.667 0.00 0.00 41.76 5.03
474 770 2.202676 GGAGCTGCGAAGACCGAG 60.203 66.667 0.00 0.00 41.76 4.63
475 771 4.116328 CGGAGCTGCGAAGACCGA 62.116 66.667 24.56 0.00 45.31 4.69
477 773 0.389426 TTAACGGAGCTGCGAAGACC 60.389 55.000 34.91 4.76 0.00 3.85
478 774 1.390463 CTTTAACGGAGCTGCGAAGAC 59.610 52.381 34.91 0.00 0.00 3.01
479 775 1.000506 ACTTTAACGGAGCTGCGAAGA 59.999 47.619 34.91 15.28 0.00 2.87
480 776 1.126846 CACTTTAACGGAGCTGCGAAG 59.873 52.381 34.91 26.73 0.00 3.79
481 777 1.144969 CACTTTAACGGAGCTGCGAA 58.855 50.000 34.91 18.46 0.00 4.70
482 778 0.315886 TCACTTTAACGGAGCTGCGA 59.684 50.000 34.91 10.19 0.00 5.10
483 779 0.716108 CTCACTTTAACGGAGCTGCG 59.284 55.000 26.95 26.95 0.00 5.18
484 780 1.079503 CCTCACTTTAACGGAGCTGC 58.920 55.000 0.00 0.00 0.00 5.25
485 781 2.338500 GACCTCACTTTAACGGAGCTG 58.662 52.381 0.00 0.00 0.00 4.24
486 782 1.275573 GGACCTCACTTTAACGGAGCT 59.724 52.381 0.00 0.00 0.00 4.09
487 783 1.723220 GGACCTCACTTTAACGGAGC 58.277 55.000 0.00 0.00 0.00 4.70
488 784 1.992170 CGGACCTCACTTTAACGGAG 58.008 55.000 0.00 0.00 0.00 4.63
489 785 0.037975 GCGGACCTCACTTTAACGGA 60.038 55.000 0.00 0.00 0.00 4.69
490 786 0.037605 AGCGGACCTCACTTTAACGG 60.038 55.000 0.00 0.00 0.00 4.44
491 787 1.347320 GAGCGGACCTCACTTTAACG 58.653 55.000 0.00 0.00 40.45 3.18
492 788 1.723220 GGAGCGGACCTCACTTTAAC 58.277 55.000 0.00 0.00 42.62 2.01
493 789 0.245539 CGGAGCGGACCTCACTTTAA 59.754 55.000 0.00 0.00 42.62 1.52
494 790 1.888018 CGGAGCGGACCTCACTTTA 59.112 57.895 0.00 0.00 42.62 1.85
495 791 2.657237 CGGAGCGGACCTCACTTT 59.343 61.111 0.00 0.00 42.62 2.66
509 805 1.005569 TCTCTTAACTCTGCTCCCGGA 59.994 52.381 0.73 0.00 0.00 5.14
510 806 1.407258 CTCTCTTAACTCTGCTCCCGG 59.593 57.143 0.00 0.00 0.00 5.73
511 807 1.202359 GCTCTCTTAACTCTGCTCCCG 60.202 57.143 0.00 0.00 0.00 5.14
512 808 1.202359 CGCTCTCTTAACTCTGCTCCC 60.202 57.143 0.00 0.00 0.00 4.30
513 809 1.202359 CCGCTCTCTTAACTCTGCTCC 60.202 57.143 0.00 0.00 0.00 4.70
514 810 1.746220 TCCGCTCTCTTAACTCTGCTC 59.254 52.381 0.00 0.00 0.00 4.26
515 811 1.748493 CTCCGCTCTCTTAACTCTGCT 59.252 52.381 0.00 0.00 0.00 4.24
516 812 1.746220 TCTCCGCTCTCTTAACTCTGC 59.254 52.381 0.00 0.00 0.00 4.26
517 813 2.357637 CCTCTCCGCTCTCTTAACTCTG 59.642 54.545 0.00 0.00 0.00 3.35
518 814 2.240160 TCCTCTCCGCTCTCTTAACTCT 59.760 50.000 0.00 0.00 0.00 3.24
519 815 2.645802 TCCTCTCCGCTCTCTTAACTC 58.354 52.381 0.00 0.00 0.00 3.01
520 816 2.756207 GTTCCTCTCCGCTCTCTTAACT 59.244 50.000 0.00 0.00 0.00 2.24
521 817 2.159212 GGTTCCTCTCCGCTCTCTTAAC 60.159 54.545 0.00 0.00 0.00 2.01
522 818 2.100989 GGTTCCTCTCCGCTCTCTTAA 58.899 52.381 0.00 0.00 0.00 1.85
523 819 1.685491 GGGTTCCTCTCCGCTCTCTTA 60.685 57.143 0.00 0.00 0.00 2.10
524 820 0.973496 GGGTTCCTCTCCGCTCTCTT 60.973 60.000 0.00 0.00 0.00 2.85
525 821 1.380650 GGGTTCCTCTCCGCTCTCT 60.381 63.158 0.00 0.00 0.00 3.10
526 822 1.258445 TTGGGTTCCTCTCCGCTCTC 61.258 60.000 0.00 0.00 0.00 3.20
527 823 1.229209 TTGGGTTCCTCTCCGCTCT 60.229 57.895 0.00 0.00 0.00 4.09
528 824 1.079057 GTTGGGTTCCTCTCCGCTC 60.079 63.158 0.00 0.00 0.00 5.03
529 825 1.841556 TGTTGGGTTCCTCTCCGCT 60.842 57.895 0.00 0.00 0.00 5.52
530 826 1.671379 GTGTTGGGTTCCTCTCCGC 60.671 63.158 0.00 0.00 0.00 5.54
531 827 0.037232 GAGTGTTGGGTTCCTCTCCG 60.037 60.000 0.00 0.00 0.00 4.63
532 828 0.325272 GGAGTGTTGGGTTCCTCTCC 59.675 60.000 0.00 0.00 35.45 3.71
533 829 0.325272 GGGAGTGTTGGGTTCCTCTC 59.675 60.000 0.00 0.00 0.00 3.20
534 830 0.104409 AGGGAGTGTTGGGTTCCTCT 60.104 55.000 0.00 0.00 0.00 3.69
535 831 0.325272 GAGGGAGTGTTGGGTTCCTC 59.675 60.000 0.00 0.00 34.78 3.71
536 832 0.104409 AGAGGGAGTGTTGGGTTCCT 60.104 55.000 0.00 0.00 0.00 3.36
537 833 0.036875 CAGAGGGAGTGTTGGGTTCC 59.963 60.000 0.00 0.00 0.00 3.62
538 834 0.765510 ACAGAGGGAGTGTTGGGTTC 59.234 55.000 0.00 0.00 0.00 3.62
539 835 2.112279 TACAGAGGGAGTGTTGGGTT 57.888 50.000 0.00 0.00 0.00 4.11
540 836 2.344093 ATACAGAGGGAGTGTTGGGT 57.656 50.000 0.00 0.00 0.00 4.51
541 837 2.840651 AGAATACAGAGGGAGTGTTGGG 59.159 50.000 0.00 0.00 0.00 4.12
542 838 4.559862 AAGAATACAGAGGGAGTGTTGG 57.440 45.455 0.00 0.00 0.00 3.77
543 839 6.884280 AAAAAGAATACAGAGGGAGTGTTG 57.116 37.500 0.00 0.00 0.00 3.33
592 888 3.123620 GGTGCAAGAGCTCTGCCG 61.124 66.667 25.45 16.21 42.74 5.69
611 907 4.522022 CAGTTTCTCCAGCCATTCTCTTTT 59.478 41.667 0.00 0.00 0.00 2.27
615 911 3.340814 TCAGTTTCTCCAGCCATTCTC 57.659 47.619 0.00 0.00 0.00 2.87
695 991 3.065648 TGTTCCGTAGCACAACTTTTTCC 59.934 43.478 0.00 0.00 0.00 3.13
699 995 3.440872 TGTTTGTTCCGTAGCACAACTTT 59.559 39.130 0.00 0.00 32.57 2.66
704 1000 1.332375 GCTTGTTTGTTCCGTAGCACA 59.668 47.619 0.00 0.00 0.00 4.57
863 1159 7.175119 GTGAAAGAAGGGTAATCTTGTAGCTTT 59.825 37.037 0.00 0.00 37.22 3.51
1116 1412 2.126031 GCGTCCTTCTGGTCGGAC 60.126 66.667 0.00 0.00 43.29 4.79
1173 1469 3.329542 GACCATCGCCAGCTTCCCA 62.330 63.158 0.00 0.00 0.00 4.37
1323 1619 7.196331 GCAGATGTTTAATTGATGGTTACCTC 58.804 38.462 2.07 0.00 0.00 3.85
1570 1866 1.270839 CCCACAATGAACAGGACGAGT 60.271 52.381 0.00 0.00 0.00 4.18
1946 2242 7.776618 ATACATCTTACATTATGGGACGAGA 57.223 36.000 0.00 0.00 0.00 4.04
1985 2282 2.296752 TCCGTCTGTTCCATAACGTCAA 59.703 45.455 0.00 0.00 38.53 3.18
1986 2283 1.887854 TCCGTCTGTTCCATAACGTCA 59.112 47.619 0.00 0.00 38.53 4.35
2053 2350 5.160641 CGAAATTTTTCACGGGATGTCATT 58.839 37.500 0.00 0.00 37.01 2.57
2060 2357 9.381033 TCTTATATTACGAAATTTTTCACGGGA 57.619 29.630 4.12 0.00 37.01 5.14
2111 2408 6.610075 AAAACAAGGTATGCCATTGAATCT 57.390 33.333 15.31 0.00 37.19 2.40
2149 2446 4.407296 AGGAATAGTTTGCTCTTCGGATCT 59.593 41.667 0.00 0.00 31.08 2.75
2189 2493 1.543429 GGGAGTATCATCAAAGGGCCG 60.543 57.143 0.00 0.00 36.25 6.13
2205 2509 1.205893 CTCTTTCAAGGACGGAGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
2206 2510 1.267121 CTCTTTCAAGGACGGAGGGA 58.733 55.000 0.00 0.00 0.00 4.20
2207 2511 0.977395 ACTCTTTCAAGGACGGAGGG 59.023 55.000 0.00 0.00 0.00 4.30
2208 2512 1.344763 ACACTCTTTCAAGGACGGAGG 59.655 52.381 0.00 0.00 0.00 4.30
2209 2513 2.821991 ACACTCTTTCAAGGACGGAG 57.178 50.000 0.00 0.00 0.00 4.63
2210 2514 3.228453 ACTACACTCTTTCAAGGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
2211 2515 3.662247 ACTACACTCTTTCAAGGACGG 57.338 47.619 0.00 0.00 0.00 4.79
2212 2516 5.047847 TGAAACTACACTCTTTCAAGGACG 58.952 41.667 0.00 0.00 34.24 4.79
2213 2517 6.539103 AGTTGAAACTACACTCTTTCAAGGAC 59.461 38.462 5.94 0.00 43.60 3.85
2214 2518 6.650120 AGTTGAAACTACACTCTTTCAAGGA 58.350 36.000 5.94 0.00 43.60 3.36
2215 2519 6.927294 AGTTGAAACTACACTCTTTCAAGG 57.073 37.500 5.94 0.00 43.60 3.61
2216 2520 7.119997 CGAAGTTGAAACTACACTCTTTCAAG 58.880 38.462 5.94 0.00 43.60 3.02
2217 2521 6.592607 ACGAAGTTGAAACTACACTCTTTCAA 59.407 34.615 0.00 2.23 37.78 2.69
2218 2522 6.103997 ACGAAGTTGAAACTACACTCTTTCA 58.896 36.000 0.00 0.00 37.78 2.69
2219 2523 6.585389 ACGAAGTTGAAACTACACTCTTTC 57.415 37.500 0.00 0.00 37.78 2.62
2237 2541 2.770164 AGATTGACCCTCCAACGAAG 57.230 50.000 0.00 0.00 0.00 3.79
2238 2542 4.030913 AGATAGATTGACCCTCCAACGAA 58.969 43.478 0.00 0.00 0.00 3.85
2239 2543 3.643237 AGATAGATTGACCCTCCAACGA 58.357 45.455 0.00 0.00 0.00 3.85
2240 2544 4.408182 AAGATAGATTGACCCTCCAACG 57.592 45.455 0.00 0.00 0.00 4.10
2241 2545 7.339482 ACTTTAAGATAGATTGACCCTCCAAC 58.661 38.462 0.00 0.00 0.00 3.77
2242 2546 7.510675 ACTTTAAGATAGATTGACCCTCCAA 57.489 36.000 0.00 0.00 0.00 3.53
2243 2547 7.510675 AACTTTAAGATAGATTGACCCTCCA 57.489 36.000 0.00 0.00 0.00 3.86
2244 2548 8.047310 TCAAACTTTAAGATAGATTGACCCTCC 58.953 37.037 0.00 0.00 31.89 4.30
2245 2549 8.884726 GTCAAACTTTAAGATAGATTGACCCTC 58.115 37.037 13.70 0.00 43.71 4.30
2246 2550 8.794335 GTCAAACTTTAAGATAGATTGACCCT 57.206 34.615 13.70 0.00 43.71 4.34
2249 2553 8.475331 TCGGTCAAACTTTAAGATAGATTGAC 57.525 34.615 15.30 15.30 46.30 3.18
2250 2554 7.277981 GCTCGGTCAAACTTTAAGATAGATTGA 59.722 37.037 0.00 0.00 33.66 2.57
2251 2555 7.278868 AGCTCGGTCAAACTTTAAGATAGATTG 59.721 37.037 0.00 0.00 0.00 2.67
2252 2556 7.331791 AGCTCGGTCAAACTTTAAGATAGATT 58.668 34.615 0.00 0.00 0.00 2.40
2253 2557 6.879400 AGCTCGGTCAAACTTTAAGATAGAT 58.121 36.000 0.00 0.00 0.00 1.98
2254 2558 6.282199 AGCTCGGTCAAACTTTAAGATAGA 57.718 37.500 0.00 0.00 0.00 1.98
2255 2559 6.969828 AAGCTCGGTCAAACTTTAAGATAG 57.030 37.500 0.00 0.00 0.00 2.08
2256 2560 7.011109 GCATAAGCTCGGTCAAACTTTAAGATA 59.989 37.037 0.00 0.00 37.91 1.98
2257 2561 6.183360 GCATAAGCTCGGTCAAACTTTAAGAT 60.183 38.462 0.00 0.00 37.91 2.40
2258 2562 5.121768 GCATAAGCTCGGTCAAACTTTAAGA 59.878 40.000 0.00 0.00 37.91 2.10
2259 2563 5.106712 TGCATAAGCTCGGTCAAACTTTAAG 60.107 40.000 0.00 0.00 42.74 1.85
2260 2564 4.757657 TGCATAAGCTCGGTCAAACTTTAA 59.242 37.500 0.00 0.00 42.74 1.52
2261 2565 4.320023 TGCATAAGCTCGGTCAAACTTTA 58.680 39.130 0.00 0.00 42.74 1.85
2262 2566 3.146066 TGCATAAGCTCGGTCAAACTTT 58.854 40.909 0.00 0.00 42.74 2.66
2263 2567 2.778299 TGCATAAGCTCGGTCAAACTT 58.222 42.857 0.00 0.00 42.74 2.66
2264 2568 2.472695 TGCATAAGCTCGGTCAAACT 57.527 45.000 0.00 0.00 42.74 2.66
2265 2569 3.552604 TTTGCATAAGCTCGGTCAAAC 57.447 42.857 0.00 0.00 42.74 2.93
2266 2570 4.576216 TTTTTGCATAAGCTCGGTCAAA 57.424 36.364 0.00 0.00 42.74 2.69
2267 2571 4.782019 ATTTTTGCATAAGCTCGGTCAA 57.218 36.364 0.00 0.00 42.74 3.18
2268 2572 5.356751 ACATATTTTTGCATAAGCTCGGTCA 59.643 36.000 0.00 0.00 42.74 4.02
2269 2573 5.821204 ACATATTTTTGCATAAGCTCGGTC 58.179 37.500 0.00 0.00 42.74 4.79
2270 2574 5.356751 TGACATATTTTTGCATAAGCTCGGT 59.643 36.000 0.00 0.00 42.74 4.69
2271 2575 5.820131 TGACATATTTTTGCATAAGCTCGG 58.180 37.500 0.00 0.00 42.74 4.63
2272 2576 7.919313 ATTGACATATTTTTGCATAAGCTCG 57.081 32.000 0.00 0.00 42.74 5.03
2289 2593 9.874205 CCTATTTGGTTTCACAAATATTGACAT 57.126 29.630 10.65 0.00 46.39 3.06
2341 2645 8.352201 GCCATCAAATTAGTAGCATTACATTCA 58.648 33.333 0.00 0.00 31.96 2.57
2342 2646 8.352201 TGCCATCAAATTAGTAGCATTACATTC 58.648 33.333 0.00 0.00 31.96 2.67
2343 2647 8.236585 TGCCATCAAATTAGTAGCATTACATT 57.763 30.769 0.00 0.00 31.96 2.71
2344 2648 7.822161 TGCCATCAAATTAGTAGCATTACAT 57.178 32.000 0.00 0.00 31.96 2.29
2345 2649 7.822161 ATGCCATCAAATTAGTAGCATTACA 57.178 32.000 0.00 0.00 36.10 2.41
2349 2653 9.690913 ACATATATGCCATCAAATTAGTAGCAT 57.309 29.630 12.79 0.00 41.89 3.79
2350 2654 9.519191 AACATATATGCCATCAAATTAGTAGCA 57.481 29.630 12.79 0.00 0.00 3.49
2351 2655 9.778993 CAACATATATGCCATCAAATTAGTAGC 57.221 33.333 12.79 0.00 0.00 3.58
2353 2657 9.806448 ACCAACATATATGCCATCAAATTAGTA 57.194 29.630 12.79 0.00 0.00 1.82
2354 2658 8.710749 ACCAACATATATGCCATCAAATTAGT 57.289 30.769 12.79 0.00 0.00 2.24
2355 2659 9.017509 AGACCAACATATATGCCATCAAATTAG 57.982 33.333 12.79 0.00 0.00 1.73
2356 2660 8.938801 AGACCAACATATATGCCATCAAATTA 57.061 30.769 12.79 0.00 0.00 1.40
2357 2661 7.844493 AGACCAACATATATGCCATCAAATT 57.156 32.000 12.79 0.00 0.00 1.82
2358 2662 9.537852 AATAGACCAACATATATGCCATCAAAT 57.462 29.630 12.79 0.00 0.00 2.32
2359 2663 8.938801 AATAGACCAACATATATGCCATCAAA 57.061 30.769 12.79 0.00 0.00 2.69
2413 2717 9.936759 TTCCAACTTTATTGAAAAGTCAAACTT 57.063 25.926 3.79 0.00 46.66 2.66
2414 2718 9.586435 CTTCCAACTTTATTGAAAAGTCAAACT 57.414 29.630 3.79 0.00 46.66 2.66
2415 2719 9.366216 ACTTCCAACTTTATTGAAAAGTCAAAC 57.634 29.630 3.79 0.00 46.66 2.93
2418 2722 9.179909 TGTACTTCCAACTTTATTGAAAAGTCA 57.820 29.630 3.79 6.72 39.36 3.41
2419 2723 9.447040 GTGTACTTCCAACTTTATTGAAAAGTC 57.553 33.333 3.79 5.11 39.36 3.01
2420 2724 9.185680 AGTGTACTTCCAACTTTATTGAAAAGT 57.814 29.630 0.00 0.00 41.82 2.66
2421 2725 9.665264 GAGTGTACTTCCAACTTTATTGAAAAG 57.335 33.333 0.00 0.00 0.00 2.27
2422 2726 9.403583 AGAGTGTACTTCCAACTTTATTGAAAA 57.596 29.630 0.00 0.00 0.00 2.29
2423 2727 8.974060 AGAGTGTACTTCCAACTTTATTGAAA 57.026 30.769 0.00 0.00 0.00 2.69
2424 2728 8.974060 AAGAGTGTACTTCCAACTTTATTGAA 57.026 30.769 0.00 0.00 0.00 2.69
2425 2729 8.974060 AAAGAGTGTACTTCCAACTTTATTGA 57.026 30.769 0.00 0.00 0.00 2.57
2430 2734 9.457436 TTCTTAAAAGAGTGTACTTCCAACTTT 57.543 29.630 0.00 0.00 36.22 2.66
2431 2735 9.628500 ATTCTTAAAAGAGTGTACTTCCAACTT 57.372 29.630 0.00 0.00 36.22 2.66
2436 2740 9.589111 CCTCTATTCTTAAAAGAGTGTACTTCC 57.411 37.037 0.00 0.00 35.93 3.46
2437 2741 9.589111 CCCTCTATTCTTAAAAGAGTGTACTTC 57.411 37.037 0.00 0.00 35.93 3.01
2438 2742 9.322769 TCCCTCTATTCTTAAAAGAGTGTACTT 57.677 33.333 0.00 0.00 35.93 2.24
2439 2743 8.896722 TCCCTCTATTCTTAAAAGAGTGTACT 57.103 34.615 0.00 0.00 35.93 2.73
2440 2744 8.751242 ACTCCCTCTATTCTTAAAAGAGTGTAC 58.249 37.037 0.00 0.00 35.93 2.90
2441 2745 8.896722 ACTCCCTCTATTCTTAAAAGAGTGTA 57.103 34.615 0.00 0.00 35.93 2.90
2442 2746 7.800300 ACTCCCTCTATTCTTAAAAGAGTGT 57.200 36.000 0.00 0.00 35.93 3.55
2443 2747 9.810545 CTTACTCCCTCTATTCTTAAAAGAGTG 57.189 37.037 0.00 0.00 35.93 3.51
2444 2748 9.549984 ACTTACTCCCTCTATTCTTAAAAGAGT 57.450 33.333 0.00 0.00 35.93 3.24
2452 2756 9.369672 CCTACATTACTTACTCCCTCTATTCTT 57.630 37.037 0.00 0.00 0.00 2.52
2453 2757 7.452189 GCCTACATTACTTACTCCCTCTATTCT 59.548 40.741 0.00 0.00 0.00 2.40
2454 2758 7.232941 TGCCTACATTACTTACTCCCTCTATTC 59.767 40.741 0.00 0.00 0.00 1.75
2455 2759 7.073854 TGCCTACATTACTTACTCCCTCTATT 58.926 38.462 0.00 0.00 0.00 1.73
2456 2760 6.621394 TGCCTACATTACTTACTCCCTCTAT 58.379 40.000 0.00 0.00 0.00 1.98
2457 2761 6.022107 TGCCTACATTACTTACTCCCTCTA 57.978 41.667 0.00 0.00 0.00 2.43
2458 2762 4.880164 TGCCTACATTACTTACTCCCTCT 58.120 43.478 0.00 0.00 0.00 3.69
2459 2763 5.105064 TGTTGCCTACATTACTTACTCCCTC 60.105 44.000 0.00 0.00 0.00 4.30
2460 2764 4.781087 TGTTGCCTACATTACTTACTCCCT 59.219 41.667 0.00 0.00 0.00 4.20
2461 2765 5.093849 TGTTGCCTACATTACTTACTCCC 57.906 43.478 0.00 0.00 0.00 4.30
2484 2788 9.871175 TCCAGTATATATACTACTGACAACCAA 57.129 33.333 22.16 0.00 45.82 3.67
2496 2800 8.687242 CCACGATGAACATCCAGTATATATACT 58.313 37.037 18.01 18.01 36.71 2.12
2497 2801 8.467598 ACCACGATGAACATCCAGTATATATAC 58.532 37.037 14.05 14.05 34.40 1.47
2498 2802 8.466798 CACCACGATGAACATCCAGTATATATA 58.533 37.037 8.87 0.00 34.40 0.86
2499 2803 7.323420 CACCACGATGAACATCCAGTATATAT 58.677 38.462 8.87 0.00 34.40 0.86
2500 2804 6.295067 CCACCACGATGAACATCCAGTATATA 60.295 42.308 8.87 0.00 34.40 0.86
2501 2805 5.511373 CCACCACGATGAACATCCAGTATAT 60.511 44.000 8.87 0.00 34.40 0.86
2502 2806 4.202212 CCACCACGATGAACATCCAGTATA 60.202 45.833 8.87 0.00 34.40 1.47
2503 2807 3.432186 CCACCACGATGAACATCCAGTAT 60.432 47.826 8.87 0.00 34.40 2.12
2504 2808 2.093711 CCACCACGATGAACATCCAGTA 60.094 50.000 8.87 0.00 34.40 2.74
2505 2809 1.339055 CCACCACGATGAACATCCAGT 60.339 52.381 8.87 0.49 34.40 4.00
2506 2810 1.066215 TCCACCACGATGAACATCCAG 60.066 52.381 8.87 2.65 34.40 3.86
2507 2811 0.980423 TCCACCACGATGAACATCCA 59.020 50.000 8.87 0.00 34.40 3.41
2508 2812 1.942657 CATCCACCACGATGAACATCC 59.057 52.381 8.87 0.00 41.92 3.51
2509 2813 2.905075 TCATCCACCACGATGAACATC 58.095 47.619 4.88 4.88 44.38 3.06
2514 2818 1.515487 CCGTCATCCACCACGATGA 59.485 57.895 0.00 0.00 44.98 2.92
2515 2819 2.173669 GCCGTCATCCACCACGATG 61.174 63.158 0.00 0.00 40.92 3.84
2516 2820 2.186903 GCCGTCATCCACCACGAT 59.813 61.111 0.00 0.00 38.32 3.73
2517 2821 4.429212 CGCCGTCATCCACCACGA 62.429 66.667 0.00 0.00 38.32 4.35
2521 2825 2.660258 AATAGCCGCCGTCATCCACC 62.660 60.000 0.00 0.00 0.00 4.61
2522 2826 1.227556 AATAGCCGCCGTCATCCAC 60.228 57.895 0.00 0.00 0.00 4.02
2523 2827 1.227527 CAATAGCCGCCGTCATCCA 60.228 57.895 0.00 0.00 0.00 3.41
2524 2828 0.320771 ATCAATAGCCGCCGTCATCC 60.321 55.000 0.00 0.00 0.00 3.51
2525 2829 2.363788 TATCAATAGCCGCCGTCATC 57.636 50.000 0.00 0.00 0.00 2.92
2526 2830 3.334583 AATATCAATAGCCGCCGTCAT 57.665 42.857 0.00 0.00 0.00 3.06
2527 2831 2.805671 CAAATATCAATAGCCGCCGTCA 59.194 45.455 0.00 0.00 0.00 4.35
2528 2832 3.064207 TCAAATATCAATAGCCGCCGTC 58.936 45.455 0.00 0.00 0.00 4.79
2529 2833 3.120321 TCAAATATCAATAGCCGCCGT 57.880 42.857 0.00 0.00 0.00 5.68
2530 2834 4.481930 TTTCAAATATCAATAGCCGCCG 57.518 40.909 0.00 0.00 0.00 6.46
2531 2835 5.691754 CCTTTTTCAAATATCAATAGCCGCC 59.308 40.000 0.00 0.00 0.00 6.13
2532 2836 6.503524 TCCTTTTTCAAATATCAATAGCCGC 58.496 36.000 0.00 0.00 0.00 6.53
2533 2837 7.973388 TGTTCCTTTTTCAAATATCAATAGCCG 59.027 33.333 0.00 0.00 0.00 5.52
2534 2838 9.087424 GTGTTCCTTTTTCAAATATCAATAGCC 57.913 33.333 0.00 0.00 0.00 3.93
2535 2839 9.638239 TGTGTTCCTTTTTCAAATATCAATAGC 57.362 29.630 0.00 0.00 0.00 2.97
2538 2842 9.829507 TGTTGTGTTCCTTTTTCAAATATCAAT 57.170 25.926 0.00 0.00 0.00 2.57
2539 2843 9.658799 TTGTTGTGTTCCTTTTTCAAATATCAA 57.341 25.926 0.00 0.00 0.00 2.57
2540 2844 9.658799 TTTGTTGTGTTCCTTTTTCAAATATCA 57.341 25.926 0.00 0.00 0.00 2.15
2597 2901 8.746530 CCTTTATCCTATATCAGCATGCATTTT 58.253 33.333 21.98 4.04 34.76 1.82
2598 2902 7.147949 GCCTTTATCCTATATCAGCATGCATTT 60.148 37.037 21.98 5.98 34.76 2.32
2599 2903 6.320672 GCCTTTATCCTATATCAGCATGCATT 59.679 38.462 21.98 6.37 34.76 3.56
2600 2904 5.826737 GCCTTTATCCTATATCAGCATGCAT 59.173 40.000 21.98 8.19 34.76 3.96
2601 2905 5.188434 GCCTTTATCCTATATCAGCATGCA 58.812 41.667 21.98 0.00 34.76 3.96
2602 2906 5.188434 TGCCTTTATCCTATATCAGCATGC 58.812 41.667 10.51 10.51 34.76 4.06
2603 2907 7.692460 TTTGCCTTTATCCTATATCAGCATG 57.308 36.000 0.00 0.00 37.54 4.06
2604 2908 8.746530 CAATTTGCCTTTATCCTATATCAGCAT 58.253 33.333 0.00 0.00 0.00 3.79
2605 2909 7.944000 TCAATTTGCCTTTATCCTATATCAGCA 59.056 33.333 0.00 0.00 0.00 4.41
2606 2910 8.340618 TCAATTTGCCTTTATCCTATATCAGC 57.659 34.615 0.00 0.00 0.00 4.26
2608 2912 9.639563 TGTTCAATTTGCCTTTATCCTATATCA 57.360 29.630 0.00 0.00 0.00 2.15
2611 2915 8.691797 GGTTGTTCAATTTGCCTTTATCCTATA 58.308 33.333 0.00 0.00 0.00 1.31
2612 2916 7.180051 TGGTTGTTCAATTTGCCTTTATCCTAT 59.820 33.333 0.00 0.00 0.00 2.57
2613 2917 6.495181 TGGTTGTTCAATTTGCCTTTATCCTA 59.505 34.615 0.00 0.00 0.00 2.94
2614 2918 5.306678 TGGTTGTTCAATTTGCCTTTATCCT 59.693 36.000 0.00 0.00 0.00 3.24
2615 2919 5.546526 TGGTTGTTCAATTTGCCTTTATCC 58.453 37.500 0.00 0.00 0.00 2.59
2616 2920 6.346518 CGTTGGTTGTTCAATTTGCCTTTATC 60.347 38.462 0.00 0.00 0.00 1.75
2617 2921 5.465056 CGTTGGTTGTTCAATTTGCCTTTAT 59.535 36.000 0.00 0.00 0.00 1.40
2618 2922 4.806247 CGTTGGTTGTTCAATTTGCCTTTA 59.194 37.500 0.00 0.00 0.00 1.85
2619 2923 3.620821 CGTTGGTTGTTCAATTTGCCTTT 59.379 39.130 0.00 0.00 0.00 3.11
2620 2924 3.194062 CGTTGGTTGTTCAATTTGCCTT 58.806 40.909 0.00 0.00 0.00 4.35
2621 2925 2.482839 CCGTTGGTTGTTCAATTTGCCT 60.483 45.455 0.00 0.00 0.00 4.75
2622 2926 1.864082 CCGTTGGTTGTTCAATTTGCC 59.136 47.619 0.00 0.00 0.00 4.52
2623 2927 2.545731 ACCGTTGGTTGTTCAATTTGC 58.454 42.857 0.00 0.00 27.29 3.68
2624 2928 4.177026 TGAACCGTTGGTTGTTCAATTTG 58.823 39.130 5.85 0.00 46.95 2.32
2625 2929 4.457834 TGAACCGTTGGTTGTTCAATTT 57.542 36.364 5.85 0.00 46.95 1.82
2630 2934 1.336755 AGCATGAACCGTTGGTTGTTC 59.663 47.619 5.85 0.00 46.95 3.18
2631 2935 1.336755 GAGCATGAACCGTTGGTTGTT 59.663 47.619 5.85 0.00 46.95 2.83
2632 2936 0.951558 GAGCATGAACCGTTGGTTGT 59.048 50.000 5.85 0.00 46.95 3.32
2633 2937 0.110238 CGAGCATGAACCGTTGGTTG 60.110 55.000 5.85 0.00 46.95 3.77
2635 2939 0.036388 ATCGAGCATGAACCGTTGGT 60.036 50.000 0.00 0.00 37.65 3.67
2636 2940 0.652592 GATCGAGCATGAACCGTTGG 59.347 55.000 0.00 0.00 0.00 3.77
2637 2941 1.358877 TGATCGAGCATGAACCGTTG 58.641 50.000 0.00 0.00 0.00 4.10
2638 2942 2.315925 ATGATCGAGCATGAACCGTT 57.684 45.000 16.66 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.