>input_sequence_72600
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---------------ATGGCGTTAGCCCCCACATCTCTCCAGAGCTTCCTCACAGGGAGGCCCCTATGCACGGCCCCGCA
GCTCACGAGGTCGTCAATTAGGCCGGCATCGGCGAGGCTCTCTTGCAGGGCGTCCGACCAGAAGGACGCGCCTCCGTCGT
GGGCCGGAAACCTCGAGCTGAAAAATCTTGGGAAGCTGGCGATGGTCGCCATGGCCGCCGGCGTGCTCGTACTCGCGCCC
GTCGACGACGCCATGGCGGGCAAGTCCGGCGGCAGGATCGGTGGGAAGGCGTTTCGGTCCGCGGCACCGCGCTCGTCCGG
TCCAAGGATAAACAACTCGAGGTAACCATCAATTAAACATCTGCCAGATGGCCAGATCTAACGTAGCAATAGCCTGATGC
AATTCTGATTTGTTTTGTGATGCTCGCGCGCGTGCTCGCAGGACGAACATCTACGTCAATCCCGGCGTGGCGCCACCGCT
GGTCGGCGGCTACGGCTACGGTGGCTATGGCGGGTACGGCTTGTCGCCGTTCGGCTTCTACGGTGGCCCGAGCGTCGCCC
TCGGGGTCGGTGGCGGCTTCGACACACTCGTCCTGTTCATTGTGGGCGGGGCGGTCGTCGGCGCCGTCCGGCGGTTCCTC
AACCGCAGGGATAACGATGATTACGACGACTAA-----------------------------------------------
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>chr7D_1_TraesCS7D01G421800
TGCCTCGCTCTCACAGATTTGCTAGGGTTGAGCTCCCTCCATAGGCATGTAAAGGAGGTGAAGCATTAGGTCCGGGGCGG
AAGCTTTCTATTTGGTAGGGCTCATTATCGGTGATGAGCATGCTCATCGGCATTCGCCCCCTCCTTGGATACATTAGCGA
AGAGTACACCGCTATCATTGGCCGTGTTCGATCAGAGTTAGAGCTGCGGTGGTGGATGTTGGCAGGGCAGCAT-----TC
GAGGTCCGGTGGCCCGGTTGTGTGAGTATCTGGGCGAAAGCTTTGTGCTTGACGGTGATTGATCATGTCAGTTCTTGGGC
ATTGCTTCCCTTATC--GAAGGCACTTTTGAAAATCTCGCTCTCAGTTAATTCGGGTAGAAGTCATGCTAGGTTATTTGC
TTGGATCCTCGTT-------------------------------------------------------------------
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-------------------------------------------------------------TCCCTCATAAATGGTGACT
CTGGCCCCGTTCGTAATCTCTCTGCTCCCACTCCGCGGAGTTGGTGGAGCTCGGTCTTCGCAGCTCCGTTAAAGTGAGGT
CCGCTCCGGGAGCAGAGTTAAGAGAGCGGAGAGGAACCCAACACTCCCTCTGTATTCTTTTTTCCTTTTCCTACCTTATT
AAAAAATCGGCAGAGCTCTTGCACCGAAAAGAGAATGGCTGGAGAAACTGAAATGTGAAAGCACCAGATTCAACCGTGTG
CCAAGCGCACAGCTGCATGTTTGTGTGTTCGGAAAAAGTTGTGCTACGGAACAAACAAGCGCTCAAAAGATATCTCTCCT
CTAGAGGTTTCACCCGGCCGCTCACATTCGGCCAAGTGGCCTCTTGCTCATCTCAAGATAAGCCTTCTAGTCTCCTACTG
CCCTTCCTCCTCCTCCAGCCAAAACGCGGCAATCCCTGAAAGCTACAAGATTACCCTTCTTTCACCACTTCCCATCTCAA
ACTGCAGCAAGCAATCAAGAAACTCAGAGAAGGAAGAAGACATAGCAAGAGCAAGCAAAGCAAGCAAGCTAGAAGCCCAG
GGAGAGATCACGGCCATGGCGTTAGCCCCCACATCTCTCCAGAGCTTCCTCACAGGGAGGCCCCTATGCACGGCCCCGCA
GCTCACGAGGTCGTCAATTAGGCCGGCATCGGCGAGGCTCTCTTGCAGGGCGTCCGACCAGAAGGACGCGCCTCCGTCGT
GGGCCGGAAACCTCGAGCTGAAAAATCTTGGGAAGCTGGCGATGGTCGCCATGGCCGCCGGCGTGCTCGTACTCGCGCCC
GTCGACGACGCCATGGCGGGCAAGTCCGGCGGCAGGATCGGTGGGAAGGCGTTTCGGTCCGCGGCACCGCGCTCGTCCGG
TCCAAGGATAAACAACTCGAGGTAACCATCAATTAAACATCTGCCAGATGGCCAGATCTAACGTAGCAATAGCCTGATGC
AATTCTGATTTGTTTTGTGATGCTCGCGCGCGTGCTCGCAGGACGAACATCTACGTCAATCCCGGCGTGGCGCCACCGCT
GGTCGGCGGCTACGGCTACGGTGGCTATGGCGGGTACGGCTTGTCGCCGTTCGGCTTCTACGGTGGCCCGAGCGTCGCCC
TCGGGGTCGGTGGCGGCTTCGACACACTCGTCCTGTTCATTGTGGGCGGGGCGGTCGTCGGCGCCGTCCGGCGGTTCCTC
AACCGCAGGGATAACGATGATTACGACGACTAAATGATACGAGTCATGTTCATGTAATGTCATCCGACCCTTGTAATATA
GCGAGATTACTATTTTGCTCTTGTCAATGGTAATTTTGAAGTAAACATAGTAATATCGAACGAGCAATGAGAATCAGAAA
GTGTGTATAAATTTGTTATTTTCACAGAAATGGAAGAAGAAATTATAGTTAGTACTCTACCTTTTTTTAAAAAGAAATTA
TAGTTACTTTATGCTGTTCTGCACTGCTAATACGGTGCATTTCTCTTTCATCTTACAGAGGTGCCAACGCTACTTAAAAA
ATCTCGTCCCATAATGTAAGATGTATAGCTTAAAAAAC-GTTTGACGTTATGGAACAGACGGATGACAAATTTTATATTT
GTCTATCTACTTATATGTATAGAAAAATAAATGACATCCCGTGAAAAATTTCGTAATATAAGATGCATAAATGATTAAGT
AATTAAAAGATTCAATGGCATACCTTGTTTTTTCTATTTCTATATA-------GATCCGAAGAGCAAACTATTCCTATAT
TACAACTGAACACGGCCCTTTGATGATACTCCCTCCGTCCTTGAAAGAGTGTAGTTTCAACTTCGTTGGAGGGTCAATCT
ATCTTAAAGTTTGACCGAGCTTATGCAAAAATATGTCAATATTTGTGAAACCAAATAGGTATATGACGAAAATATATTTT
ATCATGAATGTAATGCTACTAATTTGATGGCATATATGTTGGTCTATTATTTTATATATATGGTCAAACATAAAAAAAGT
TTGACTTTTCAATAAAGTTGGAAGTACACTCTTTTAAGAATAGAGGGAGTAAGTAATGTAGGCAACATTGGTTGTCAGTA
GTATATATACTGGATGTTCATCGTGGTGGATGACGGCGGCTATTGATATTTGAAAAAGGAACACAACAAAATATTAGGAT
TAGAAAATATTTTATTTAAAAAAATGCATGCTGATATAGGATAAAGGCAAATTGAACAACCAACGGTTCATGCTCGATCA
T
>chr7B_9
--------TCTCACAGGTTCTCCGGGGTTGAGCTCCCTCCATAGGCATGTAAAGGAGGTGAAGCATTAGATCCGGGGCGA
AAGCTTTCG-TTTGGTGGGGCTCATTAGCGGTGATGAGGGCGCTCATCGGTATTCGGTCCCTCCTTGGATACATTAGCAA
AGAGTACCCCGCTATCATTGGTCGTGTTCAATCAGAGTTAGAGCTGCGGTGGTGGATGTTGGCAGGGCAACATTTATCTC
GAGGTCCGGTGGGCCGGTCCTGTGAGTGTCTAGGCGAAAGCTTTGTGCTTGACGGTGGTTG---ATGTCAGTTCTTGGGC
ATTGCTTCCCTTATATTGAAGGCACTTTTGAAAATCTCACTCTCAGTTGATTCGGGTAGAGGTCATGCTAGGTTATTTGC
TCGGATCCTCGCCGTTATTGTGTTGTCTTGTGTCTTTTTCATTTTCTATGTTTTTTAGCTTATAGAGGCTGTTTGGATTG
CAGCCGTCGCCTGCCCTGCCAATTTTTCGGTCGTTGACTGCTACCACAACCTTCATTTGGATCAGCGCCGATGAATCGCA
ACCATGCCAATTTTTCGGTCGGCCCGTTCAGATTTTCCGCCCACGCGTTGGCGAGATCCGGGCGGCGAAAACCTTGGCCA
AATTCTTGGGGAGCCTATTTTGGCTGGGCTGGCTCGGGCGTCATCCAAACAGCCCCTTAGGTCCCTCATAAATGGCGACT
CTGTATT-------------------------------------------------------------------------
---------------------------------------------------------TTTTTTTCTTTTTCCTCTC--TT
AAAAAATGGGCAGAGCTCTTGCACCGTAAAAAGAATGGCTAGAGAAACTAAATTGTGAAAGCACCAGATTCAACCGTGTG
CCAAA--CACAGCTGCATGTTTGTGTGTTCAGAACAAGTCGTGCTACGGAACAAACAAGCGCTCAAAAGATATCTCTTCT
CTAGAGGTTTCACCCGGCCGCTCACATTCGGCCAAGTGGCCTCTTGCTCATCTCAAGATAAGCCTTCTAGTCTCCTACTG
CCCTTCCTCCTCCTCCAGCCAAAACGCGGCAATCCCTG-AAGCTACAAGATTACCTTTCTTCCACCGCTTCCCATCTCAG
ACTGCAGCAAGCAATCAAG-AACTCAGAGAAAGAAGAAGACATAGCAAGAGCAAGCAAAGCAAGCAAGCTAGGAGCCGAG
TGGGAGATCACGGCCATGGCGTTAGCCCCCACATCTCTCCAGAGCTTCCTCACAGGGAGGCCCCTATGCACGGCCCCGCA
GCTCACGAGGTCGTCAATTAGGCCGGCATCGGCGAGGCTTTCTTGCAGGGCCTCCGACCAGAAGGACGCGCCTCCGTCGT
GGGCCGGAAACCTCGAGCTGAAAAATCTCGGGAAGCTGGCGATGGTCGCCATGGCCGCCGGCGTGCTCGTACTCGCGCCC
GTCGACGACGCCATGGCGGGCAAGTCCGGCGGCAGGATCGGTGGGAAGGCGTTTCGGTCCGCGGCACCGCGCTCGTCCGG
TCCAAGGATAAACAACTCAAGGTAACCATCAATTAAACATCTG-CAGATGGCCAGATCCAACGTAGCAATAGCCTGATGC
AATTCTGATTTGTTTTGTGATGCTCGCGCGCGTGCTCGCAGGACGAACATCTACGTCAATCCCGGCGTGGCGCCACCGCT
GGTCGGCGGCTACGGCTACGGTGGCTATGGCGGGTACGGCTTGTCGCCGTTCGGCTTCTACGGTGGCCCGAGCGTCGCCC
TCGGGGTCGGTGGCGGCTTCGACACGCTCGTCCTGTTCATTGTGGGCGGGGCGGTCGTGGGCGCCGTCCGGCGGTTCCTC
AACCGCAGGGATAACGATGATTACGACGACTAAATGATACGA---ATGTTCATGTAATGTCATTCGACCCTTGTAATATA
GCGAGATTACTATTTTGCTCTTGTCAATGGTAATTTCGAAGTAAACATAGTAATATCGAACGAGCAATGAGAATCAGAAA
GTGTGTATAAATTTGCTATTTTCGCAGAAATGGAAGAAGAAATTGTAGTTAGTACTCTACCTTTTTTCT--AAGAAATTA
TAGTTACTTTATGCTGTTCTGCACTCCTAATACGGTGCATTTCTCTTTCATCTTACAGAGGCGCCAATGCTACTTAAAAA
ACCTCATCCCATAATGTAGAACGTATAGCTTACAAAAATGTCCGATGTTATGGGACGGACGGAGTATAGATTTTATATTT
GTC--------TATATGTATAGAAAAATAGATGACACCCCGCAATTTTTTTCGTAATATAAGATGCATAAATGATTAAGT
AATTAAATGATTCAATGGCATACCTTGTTTTTTCTATTTCTATATTAATATAGGATCCAAAGAGTAAACTATTCCTATAT
TACAACTGAACATGGCCCTTTGATGATA----------------------------------------------------
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>chr7A_553
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-----------------------------------------------CTCTGTATTCTTTTTTTCTTTTTCCTCTC--TT
AAAAAATGGGCATAGCTCTTGCATCGTAAAAAGAATGGCTGGAGAAACTGAAATGTGAAAGCACCAGATTCAACCGTGTG
CCAAA--CACAGCTGCATGTTTGTGTGTTCAGAACAAGTCGTGCTACGGAACAAACAAGCGCTCAAAAGATATCTCTTCT
CTAGAGGTTTCACCCGGCCGCTCACATTCGGCCAAGTGGCCTCTTGCTCATCTCAAGATAAGCCTTCTAGTCTCCTACTG
CCCTTCCTCCTCCTCCAGCCAAAACGCGGCAATCCCTG-AAGCTACAAGATTACCCTTCTTTCACCACTTCCCATCTCAA
ACTGCAGCAAGCAATCAAGAAACTCAGAGAAGGAAGAAGACATAGCAAGAGCAAGTAAAGCAAGCAAGCTAGAAGCCCAG
GGAGAGATCACGGCCATGGCGTTAGCCCCCACATCTCTCCAGAGCTTCCTCACAGGGAGGCCCCTATGCACGGCCCCGCA
GCTCACGAGGTCGTCAATTAGGCCGGCATCGGCGAGGCTCTCTTGCAGGGCCTCCAACCAGAAGGACGCGCCTCCGTCGT
GGGCCGGAGACCTCGAGCTGAAGAATCTCGGGAGGCTGGCGATGGTCGCCCTGGCCGCCGGCGTGCTCGTGCTCGCGCCC
GTCGATGACGCCATGGCGGGCAAGTCAGGCGGCAGGATCGGCGGGAAGGCGTTCCGTTCCGCGGCGCCGCGCTCGTCCGG
TCCAAGGATAAACAACTCAAGGTAACCATCAATTAAACATCAGCCAGATGGCCAGATCTAACGTAGCAATAGCCTGATGC
AATTCTGATTTGTTTTGTGATGCTCGCGCGCGTGCTCGCAGGACGAACATCTACGTCAATCCCGGCGTGGCGCCACCGCT
GGTCGGCGGCTACGGCTACGGTGGCTATGGCGGGTACGGCTTGTCGCCGTTCGGCTTCTACGGTGGCCCGAGCGTCGCCC
TCGGGGTCGGTGGCGGCTTCGACACGCTCGTCCTGTTCATTGTGGGCGGGGCGGTCGTCGGCGCCGTCCGGCGGTTCCTC
AACCGCAGGGATAACGATGATTACGACGACTAAATGATACGAGTCATGTTCATGTAATATCATCCGACCCTTGTAATATA
GCGAGATTACTATTTTGCTCTTGTCAATGGTAATTTTGAAGTAAACATAGTAATATCGAACGAGCAATGAGAATCAGAAA
GTGTGTATAAATTTGTTATTTTCGCAGAAATGGAAGAAGAAATTGTAGTTAGTACTCTACCTTTTTT-T--AAGAAATTA
TAGTTACTTTATGCTGTTCTGCACTGCTAATACGGTGCATTTCTCTTTCATCTTAT------------------------
------------------------------------AC-GTCCGACGTTATGGGACGGACGAAGTACAAATTTTGCATTT
GTCTATCTACTTATATGTATAGAAAAATAGATGACACCCCGCAAATTTTTTCGAAATATAAGATGCATAAATGATCAAGT
AATTAAAGGATTCAATGGCATACCTTGTTTTTTCTATTTGTATAT-----------------------------------
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>SNPs
SSSSSSSS--------S--SS-SS---------------------------------------------S---------S
--------SS------S----------S----------SSS---------S-----SS--------------------S-
-------S-------------S-------S---------------------------------------S----------
------------S-----SS-------S---S-------------------------S---SSS----------------
--------------S-----------------------S---------S-----------S-------------------
-S---------SS-------------------------------------------------------------------
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---------------------------------------------------------------------------S----
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-----S-SS-SSSS--
-------S------------------S---S-------------------------------------------------
----SSS-----------------------S---S----S-------------------------------------S--
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--------------------------------------S-----------------------------------------
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---------------------------------------------------S----------------------------
----------------------------S---------------------------------------------------
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------------------S-------------------------------------------------------------
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-------------------------S------------------------------------------------------
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-----------------------S--------------------S----------------------SSSS---------
-------------------------------------------------------------S-----S------------
-S---S------------SS-S----------S--------SS----------S--S------SS---------------
-----------------------------S------S----SS--SSS--------------------------------
-------S-------------------------------------S------------S-----S---------------
------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_846
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--------------------------CGGAGAGGAACCCAACACTC----------------------------------
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>reverse_2828
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---------------------------GGATGACGGCGGCTATTGAT---------------------------------
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