Multiple sequence alignment - TraesCS7D01G421500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G421500
chr7D
100.000
3016
0
0
1
3016
540851725
540854740
0.000000e+00
5570
1
TraesCS7D01G421500
chr7A
92.707
3003
113
47
68
3016
623455097
623458047
0.000000e+00
4235
2
TraesCS7D01G421500
chr7B
92.510
2283
107
35
766
3016
584311476
584313726
0.000000e+00
3210
3
TraesCS7D01G421500
chr7B
89.633
762
23
17
1
746
584310783
584311504
0.000000e+00
918
4
TraesCS7D01G421500
chr1A
93.333
75
3
2
420
493
466043423
466043496
3.180000e-20
110
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G421500
chr7D
540851725
540854740
3015
False
5570
5570
100.0000
1
3016
1
chr7D.!!$F1
3015
1
TraesCS7D01G421500
chr7A
623455097
623458047
2950
False
4235
4235
92.7070
68
3016
1
chr7A.!!$F1
2948
2
TraesCS7D01G421500
chr7B
584310783
584313726
2943
False
2064
3210
91.0715
1
3016
2
chr7B.!!$F1
3015
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
299
312
0.034198
CACATGGACCACACCACGTA
59.966
55.0
0.00
0.0
43.03
3.57
F
300
313
0.034337
ACATGGACCACACCACGTAC
59.966
55.0
0.00
0.0
43.03
3.67
F
473
502
0.798776
GAGTGGATCGCAAAGTGGTG
59.201
55.0
0.00
0.0
0.00
4.17
F
1269
1341
0.035725
CCAAGAGAGCAGGTGCATGA
60.036
55.0
4.48
0.0
45.16
3.07
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1146
1218
0.396435
AGCACAAGTTGGATCGGTCA
59.604
50.000
7.96
0.0
0.0
4.02
R
1156
1228
1.226660
GCGCACAACAGCACAAGTT
60.227
52.632
0.30
0.0
0.0
2.66
R
1286
1358
3.264947
GTCTTGCATGATGTAGCTGTGA
58.735
45.455
5.49
0.0
0.0
3.58
R
2805
2896
0.469917
AGATGGGAATGGCACCTACG
59.530
55.000
0.00
0.0
0.0
3.51
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
19
20
2.409948
GGTGGGAGAGTTTGGAGATG
57.590
55.000
0.00
0.00
0.00
2.90
32
33
3.120468
TGGAGATGTGGAGAATCAGGA
57.880
47.619
0.00
0.00
36.25
3.86
37
38
1.279496
TGTGGAGAATCAGGAGTGGG
58.721
55.000
0.00
0.00
36.25
4.61
38
39
1.203300
TGTGGAGAATCAGGAGTGGGA
60.203
52.381
0.00
0.00
36.25
4.37
45
46
2.754012
ATCAGGAGTGGGAGAGAGAG
57.246
55.000
0.00
0.00
0.00
3.20
46
47
1.675007
TCAGGAGTGGGAGAGAGAGA
58.325
55.000
0.00
0.00
0.00
3.10
47
48
1.563879
TCAGGAGTGGGAGAGAGAGAG
59.436
57.143
0.00
0.00
0.00
3.20
48
49
0.926293
AGGAGTGGGAGAGAGAGAGG
59.074
60.000
0.00
0.00
0.00
3.69
49
50
0.106217
GGAGTGGGAGAGAGAGAGGG
60.106
65.000
0.00
0.00
0.00
4.30
50
51
0.106217
GAGTGGGAGAGAGAGAGGGG
60.106
65.000
0.00
0.00
0.00
4.79
51
52
1.075600
GTGGGAGAGAGAGAGGGGG
60.076
68.421
0.00
0.00
0.00
5.40
212
213
2.771943
TCCGGGCAATCTCTTAATGAGT
59.228
45.455
0.00
0.00
43.13
3.41
213
214
3.199946
TCCGGGCAATCTCTTAATGAGTT
59.800
43.478
0.00
0.00
43.13
3.01
214
215
3.947834
CCGGGCAATCTCTTAATGAGTTT
59.052
43.478
0.00
0.00
43.13
2.66
215
216
5.104693
TCCGGGCAATCTCTTAATGAGTTTA
60.105
40.000
0.00
0.00
43.13
2.01
267
280
2.865551
CACAAACAACATCAAACTGGCC
59.134
45.455
0.00
0.00
0.00
5.36
287
300
1.672854
GGACGGACGGATCACATGGA
61.673
60.000
0.00
0.00
0.00
3.41
288
301
0.527817
GACGGACGGATCACATGGAC
60.528
60.000
0.00
0.00
0.00
4.02
289
302
1.227263
CGGACGGATCACATGGACC
60.227
63.158
0.00
0.00
0.00
4.46
290
303
1.904771
GGACGGATCACATGGACCA
59.095
57.895
0.00
0.00
0.00
4.02
291
304
0.462047
GGACGGATCACATGGACCAC
60.462
60.000
0.00
0.00
0.00
4.16
292
305
0.249120
GACGGATCACATGGACCACA
59.751
55.000
0.00
0.00
0.00
4.17
293
306
0.036388
ACGGATCACATGGACCACAC
60.036
55.000
0.00
0.00
0.00
3.82
294
307
0.744414
CGGATCACATGGACCACACC
60.744
60.000
0.00
0.00
0.00
4.16
295
308
0.327924
GGATCACATGGACCACACCA
59.672
55.000
0.00
0.00
44.41
4.17
296
309
1.453155
GATCACATGGACCACACCAC
58.547
55.000
0.00
0.00
43.03
4.16
297
310
0.321564
ATCACATGGACCACACCACG
60.322
55.000
0.00
0.00
43.03
4.94
298
311
1.227823
CACATGGACCACACCACGT
60.228
57.895
0.00
0.00
43.03
4.49
299
312
0.034198
CACATGGACCACACCACGTA
59.966
55.000
0.00
0.00
43.03
3.57
300
313
0.034337
ACATGGACCACACCACGTAC
59.966
55.000
0.00
0.00
43.03
3.67
357
370
3.126858
TCGGTGTTCACATACGTACTACC
59.873
47.826
0.00
0.00
33.14
3.18
358
371
3.119884
CGGTGTTCACATACGTACTACCA
60.120
47.826
0.00
0.00
0.00
3.25
359
372
4.418392
GGTGTTCACATACGTACTACCAG
58.582
47.826
0.00
0.00
0.00
4.00
361
374
3.760151
TGTTCACATACGTACTACCAGCT
59.240
43.478
0.00
0.00
0.00
4.24
362
375
4.219070
TGTTCACATACGTACTACCAGCTT
59.781
41.667
0.00
0.00
0.00
3.74
363
376
5.166398
GTTCACATACGTACTACCAGCTTT
58.834
41.667
0.00
0.00
0.00
3.51
364
377
4.740268
TCACATACGTACTACCAGCTTTG
58.260
43.478
0.00
0.00
0.00
2.77
389
418
4.055227
GATGCCCCCGGGTTTGGA
62.055
66.667
21.85
9.33
37.65
3.53
405
434
5.221244
GGGTTTGGACATAGATTATTGGTGC
60.221
44.000
0.00
0.00
0.00
5.01
473
502
0.798776
GAGTGGATCGCAAAGTGGTG
59.201
55.000
0.00
0.00
0.00
4.17
575
604
4.067896
TGAGAATGAGTGCTCAACCTTTC
58.932
43.478
5.95
5.72
43.58
2.62
584
613
1.949525
GCTCAACCTTTCTGCAGACAA
59.050
47.619
18.03
12.84
0.00
3.18
695
724
4.153835
TGAAAAACTGCTTTTGTGCAAAGG
59.846
37.500
0.00
2.91
42.18
3.11
760
790
5.593095
ACGCCTCTTTTCTTACCTTTTTCTT
59.407
36.000
0.00
0.00
0.00
2.52
764
794
8.818057
GCCTCTTTTCTTACCTTTTTCTTTTTC
58.182
33.333
0.00
0.00
0.00
2.29
791
830
2.964740
TGAGAATCAGACGCCTCTTTG
58.035
47.619
0.00
0.00
42.56
2.77
961
1017
2.291043
ATCCACGACACACTCCCCC
61.291
63.158
0.00
0.00
0.00
5.40
1098
1170
1.893808
CAAGGTGCGCACTTCCACT
60.894
57.895
36.84
23.42
32.68
4.00
1100
1172
3.414700
GGTGCGCACTTCCACTCG
61.415
66.667
36.84
0.00
32.68
4.18
1101
1173
2.661866
GTGCGCACTTCCACTCGT
60.662
61.111
32.55
0.00
0.00
4.18
1102
1174
2.661537
TGCGCACTTCCACTCGTG
60.662
61.111
5.66
0.00
0.00
4.35
1119
1191
2.230266
TCGTGGCAGCCTTTTATTTTCC
59.770
45.455
14.15
0.00
0.00
3.13
1129
1201
6.709846
CAGCCTTTTATTTTCCAACCATTTCA
59.290
34.615
0.00
0.00
0.00
2.69
1132
1204
7.412891
GCCTTTTATTTTCCAACCATTTCATCG
60.413
37.037
0.00
0.00
0.00
3.84
1137
1209
1.633432
TCCAACCATTTCATCGTCCCT
59.367
47.619
0.00
0.00
0.00
4.20
1146
1218
1.376424
CATCGTCCCTTGCTGCACT
60.376
57.895
0.00
0.00
0.00
4.40
1156
1228
2.110757
TTGCTGCACTGACCGATCCA
62.111
55.000
0.00
0.00
0.00
3.41
1222
1294
2.343758
GTCTCAGCTTCGGCCACA
59.656
61.111
2.24
0.00
43.01
4.17
1226
1298
2.972505
CAGCTTCGGCCACACGTT
60.973
61.111
2.24
0.00
43.01
3.99
1249
1321
4.657824
AGACACCGAACCACCGCG
62.658
66.667
0.00
0.00
0.00
6.46
1266
1338
2.033141
GCCAAGAGAGCAGGTGCA
59.967
61.111
4.48
0.00
45.16
4.57
1267
1339
1.378250
GCCAAGAGAGCAGGTGCAT
60.378
57.895
4.48
0.00
45.16
3.96
1269
1341
0.035725
CCAAGAGAGCAGGTGCATGA
60.036
55.000
4.48
0.00
45.16
3.07
1270
1342
1.370609
CAAGAGAGCAGGTGCATGAG
58.629
55.000
4.48
0.00
45.16
2.90
1272
1344
2.125229
AGAGCAGGTGCATGAGCG
60.125
61.111
4.48
0.00
46.23
5.03
1275
1347
1.300971
GAGCAGGTGCATGAGCGAAA
61.301
55.000
4.48
0.00
46.23
3.46
1276
1348
0.890542
AGCAGGTGCATGAGCGAAAA
60.891
50.000
4.48
0.00
46.23
2.29
1277
1349
0.171903
GCAGGTGCATGAGCGAAAAT
59.828
50.000
0.00
0.00
46.23
1.82
1279
1351
2.159393
GCAGGTGCATGAGCGAAAATAA
60.159
45.455
0.00
0.00
46.23
1.40
1280
1352
3.688272
CAGGTGCATGAGCGAAAATAAG
58.312
45.455
0.00
0.00
46.23
1.73
1281
1353
3.374988
CAGGTGCATGAGCGAAAATAAGA
59.625
43.478
0.00
0.00
46.23
2.10
1282
1354
3.624861
AGGTGCATGAGCGAAAATAAGAG
59.375
43.478
0.00
0.00
46.23
2.85
1284
1356
4.094887
GGTGCATGAGCGAAAATAAGAGAA
59.905
41.667
0.00
0.00
46.23
2.87
1285
1357
5.391950
GGTGCATGAGCGAAAATAAGAGAAA
60.392
40.000
0.00
0.00
46.23
2.52
1286
1358
6.261118
GTGCATGAGCGAAAATAAGAGAAAT
58.739
36.000
0.00
0.00
46.23
2.17
1289
1361
6.413235
GCATGAGCGAAAATAAGAGAAATCAC
59.587
38.462
0.00
0.00
0.00
3.06
1290
1362
7.466805
CATGAGCGAAAATAAGAGAAATCACA
58.533
34.615
0.00
0.00
0.00
3.58
1291
1363
7.065216
TGAGCGAAAATAAGAGAAATCACAG
57.935
36.000
0.00
0.00
0.00
3.66
1292
1364
5.873732
AGCGAAAATAAGAGAAATCACAGC
58.126
37.500
0.00
0.00
0.00
4.40
1293
1365
5.645497
AGCGAAAATAAGAGAAATCACAGCT
59.355
36.000
0.00
0.00
0.00
4.24
1294
1366
6.818644
AGCGAAAATAAGAGAAATCACAGCTA
59.181
34.615
0.00
0.00
0.00
3.32
1295
1367
6.902417
GCGAAAATAAGAGAAATCACAGCTAC
59.098
38.462
0.00
0.00
0.00
3.58
1296
1368
7.413000
GCGAAAATAAGAGAAATCACAGCTACA
60.413
37.037
0.00
0.00
0.00
2.74
1297
1369
8.607459
CGAAAATAAGAGAAATCACAGCTACAT
58.393
33.333
0.00
0.00
0.00
2.29
1298
1370
9.928236
GAAAATAAGAGAAATCACAGCTACATC
57.072
33.333
0.00
0.00
0.00
3.06
1299
1371
9.453572
AAAATAAGAGAAATCACAGCTACATCA
57.546
29.630
0.00
0.00
0.00
3.07
1300
1372
9.624373
AAATAAGAGAAATCACAGCTACATCAT
57.376
29.630
0.00
0.00
0.00
2.45
1301
1373
6.922247
AAGAGAAATCACAGCTACATCATG
57.078
37.500
0.00
0.00
0.00
3.07
1302
1374
4.815308
AGAGAAATCACAGCTACATCATGC
59.185
41.667
0.00
0.00
0.00
4.06
1303
1375
4.520179
AGAAATCACAGCTACATCATGCA
58.480
39.130
0.00
0.00
0.00
3.96
1304
1376
4.945543
AGAAATCACAGCTACATCATGCAA
59.054
37.500
0.00
0.00
0.00
4.08
1305
1377
4.895224
AATCACAGCTACATCATGCAAG
57.105
40.909
0.00
0.00
0.00
4.01
1306
1378
3.615224
TCACAGCTACATCATGCAAGA
57.385
42.857
0.00
0.00
0.00
3.02
1307
1379
3.264947
TCACAGCTACATCATGCAAGAC
58.735
45.455
0.00
0.00
0.00
3.01
1308
1380
3.004862
CACAGCTACATCATGCAAGACA
58.995
45.455
0.00
0.00
0.00
3.41
1311
1383
3.688185
CAGCTACATCATGCAAGACAAGT
59.312
43.478
0.00
0.00
0.00
3.16
1317
1389
7.225538
GCTACATCATGCAAGACAAGTATAGTT
59.774
37.037
0.00
0.00
0.00
2.24
1321
1393
8.671921
CATCATGCAAGACAAGTATAGTTCTTT
58.328
33.333
0.00
0.00
0.00
2.52
1323
1395
7.334421
TCATGCAAGACAAGTATAGTTCTTTCC
59.666
37.037
0.00
0.00
0.00
3.13
1336
1408
9.315525
GTATAGTTCTTTCCAGAATTGTAGGAC
57.684
37.037
0.00
0.00
41.26
3.85
1338
1410
6.234177
AGTTCTTTCCAGAATTGTAGGACTG
58.766
40.000
0.00
0.00
41.26
3.51
1340
1412
6.433847
TCTTTCCAGAATTGTAGGACTGAA
57.566
37.500
0.00
0.00
32.90
3.02
1345
1417
5.013079
TCCAGAATTGTAGGACTGAACATGT
59.987
40.000
0.00
0.00
32.90
3.21
1364
1437
7.325660
ACATGTGTTGATTGATTGATACCTC
57.674
36.000
0.00
0.00
0.00
3.85
1666
1739
1.153939
CGTCGAGAAGGTCAGCCAG
60.154
63.158
0.00
0.00
37.19
4.85
1732
1806
3.745458
CACTTGTCTCTTTTCTGAGCCTC
59.255
47.826
0.00
0.00
34.29
4.70
1742
1816
8.160106
TCTCTTTTCTGAGCCTCTAAATTTCTT
58.840
33.333
0.00
0.00
34.29
2.52
1754
1828
7.553044
GCCTCTAAATTTCTTTTACAGCCTAGA
59.447
37.037
0.00
0.00
0.00
2.43
1755
1829
8.884726
CCTCTAAATTTCTTTTACAGCCTAGAC
58.115
37.037
0.00
0.00
0.00
2.59
1967
2042
4.789095
ACGTGTAGCTGTAACACAAAAG
57.211
40.909
16.41
4.70
46.05
2.27
2033
2118
5.292834
AGAGTAGAAACATGTGCATCAATCG
59.707
40.000
0.00
0.00
0.00
3.34
2092
2177
7.732025
TCCATGTCAGTACTTCAGTCTTTTAA
58.268
34.615
0.00
0.00
0.00
1.52
2182
2273
3.929610
GGGAGAGAAGAAAACTCATGTCG
59.070
47.826
0.00
0.00
36.91
4.35
2185
2276
3.067106
GAGAAGAAAACTCATGTCGCCA
58.933
45.455
0.00
0.00
34.87
5.69
2186
2277
3.679389
AGAAGAAAACTCATGTCGCCAT
58.321
40.909
0.00
0.00
0.00
4.40
2187
2278
4.074970
AGAAGAAAACTCATGTCGCCATT
58.925
39.130
0.00
0.00
0.00
3.16
2805
2896
1.244019
AAACCCTGAATGCACGCTCC
61.244
55.000
0.00
0.00
0.00
4.70
2883
2974
3.011818
CACATCTCTGCAGCATAAACCA
58.988
45.455
9.47
0.00
0.00
3.67
2901
2992
3.751518
ACCAGTAACCAGAACATCCAAC
58.248
45.455
0.00
0.00
0.00
3.77
2913
3004
1.311859
CATCCAACGCATGCCTATGT
58.688
50.000
13.15
0.33
36.65
2.29
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
19
20
1.484240
CTCCCACTCCTGATTCTCCAC
59.516
57.143
0.00
0.00
0.00
4.02
32
33
1.589399
CCCCCTCTCTCTCTCCCACT
61.589
65.000
0.00
0.00
0.00
4.00
51
52
2.861974
TGTCCTCCCCAAACCCCC
60.862
66.667
0.00
0.00
0.00
5.40
58
59
1.638589
CCTTATTTGGTGTCCTCCCCA
59.361
52.381
0.00
0.00
0.00
4.96
60
61
2.684038
GCTCCTTATTTGGTGTCCTCCC
60.684
54.545
0.00
0.00
0.00
4.30
267
280
1.588932
CATGTGATCCGTCCGTCCG
60.589
63.158
0.00
0.00
0.00
4.79
287
300
1.144496
GTGGTGTACGTGGTGTGGT
59.856
57.895
0.00
0.00
0.00
4.16
288
301
1.144276
TGTGGTGTACGTGGTGTGG
59.856
57.895
0.00
0.00
0.00
4.17
289
302
1.155424
GGTGTGGTGTACGTGGTGTG
61.155
60.000
0.00
0.00
0.00
3.82
290
303
1.144496
GGTGTGGTGTACGTGGTGT
59.856
57.895
0.00
0.00
0.00
4.16
291
304
1.144276
TGGTGTGGTGTACGTGGTG
59.856
57.895
0.00
0.00
0.00
4.17
292
305
1.144496
GTGGTGTGGTGTACGTGGT
59.856
57.895
0.00
0.00
0.00
4.16
293
306
1.595929
GGTGGTGTGGTGTACGTGG
60.596
63.158
0.00
0.00
0.00
4.94
294
307
1.144276
TGGTGGTGTGGTGTACGTG
59.856
57.895
0.00
0.00
0.00
4.49
295
308
1.144496
GTGGTGGTGTGGTGTACGT
59.856
57.895
0.00
0.00
0.00
3.57
296
309
1.595929
GGTGGTGGTGTGGTGTACG
60.596
63.158
0.00
0.00
0.00
3.67
297
310
1.228033
GGGTGGTGGTGTGGTGTAC
60.228
63.158
0.00
0.00
0.00
2.90
298
311
2.453812
GGGGTGGTGGTGTGGTGTA
61.454
63.158
0.00
0.00
0.00
2.90
299
312
3.816090
GGGGTGGTGGTGTGGTGT
61.816
66.667
0.00
0.00
0.00
4.16
300
313
4.947147
CGGGGTGGTGGTGTGGTG
62.947
72.222
0.00
0.00
0.00
4.17
357
370
0.529378
GCATCCAAGGACCAAAGCTG
59.471
55.000
0.00
0.00
0.00
4.24
358
371
0.613012
GGCATCCAAGGACCAAAGCT
60.613
55.000
0.00
0.00
0.00
3.74
359
372
1.607801
GGGCATCCAAGGACCAAAGC
61.608
60.000
0.00
0.00
0.00
3.51
361
374
1.078347
GGGGCATCCAAGGACCAAA
59.922
57.895
0.00
0.00
35.00
3.28
362
375
2.770130
GGGGCATCCAAGGACCAA
59.230
61.111
0.00
0.00
35.00
3.67
363
376
3.346734
GGGGGCATCCAAGGACCA
61.347
66.667
0.00
0.00
37.22
4.02
364
377
4.506255
CGGGGGCATCCAAGGACC
62.506
72.222
0.00
0.00
37.22
4.46
473
502
0.532862
CATATCACCACGCCCTGGAC
60.533
60.000
0.00
0.00
43.95
4.02
768
798
3.685139
AGAGGCGTCTGATTCTCAAAA
57.315
42.857
8.40
0.00
0.00
2.44
777
816
0.966179
TACTGCAAAGAGGCGTCTGA
59.034
50.000
10.16
0.00
36.28
3.27
791
830
2.413837
TCGAACTGAAAAGCCTACTGC
58.586
47.619
0.00
0.00
41.71
4.40
834
874
1.148273
GCCTAATGTGGCCCATCGA
59.852
57.895
0.00
0.00
46.82
3.59
1007
1067
1.368969
CGGAGATTCGGCGAGTACG
60.369
63.158
10.46
7.98
42.93
3.67
1008
1068
1.008767
CCGGAGATTCGGCGAGTAC
60.009
63.158
10.46
5.83
43.71
2.73
1063
1135
3.497932
GCCGAGAGCTGCTGCAAG
61.498
66.667
18.42
5.61
42.74
4.01
1098
1170
2.230266
GGAAAATAAAAGGCTGCCACGA
59.770
45.455
22.65
3.08
0.00
4.35
1100
1172
3.676291
TGGAAAATAAAAGGCTGCCAC
57.324
42.857
22.65
0.00
0.00
5.01
1101
1173
3.244387
GGTTGGAAAATAAAAGGCTGCCA
60.244
43.478
22.65
0.00
0.00
4.92
1102
1174
3.244387
TGGTTGGAAAATAAAAGGCTGCC
60.244
43.478
11.65
11.65
0.00
4.85
1110
1182
7.093992
GGACGATGAAATGGTTGGAAAATAAA
58.906
34.615
0.00
0.00
34.53
1.40
1119
1191
2.415893
GCAAGGGACGATGAAATGGTTG
60.416
50.000
0.00
0.00
34.53
3.77
1129
1201
1.376424
CAGTGCAGCAAGGGACGAT
60.376
57.895
0.00
0.00
33.93
3.73
1132
1204
1.968540
GGTCAGTGCAGCAAGGGAC
60.969
63.158
0.00
5.20
0.00
4.46
1137
1209
1.375908
GGATCGGTCAGTGCAGCAA
60.376
57.895
0.00
0.00
0.00
3.91
1146
1218
0.396435
AGCACAAGTTGGATCGGTCA
59.604
50.000
7.96
0.00
0.00
4.02
1156
1228
1.226660
GCGCACAACAGCACAAGTT
60.227
52.632
0.30
0.00
0.00
2.66
1222
1294
2.916502
TTCGGTGTCTGCAGCAACGT
62.917
55.000
32.42
0.00
45.99
3.99
1226
1298
2.280797
GGTTCGGTGTCTGCAGCA
60.281
61.111
9.47
7.85
42.79
4.41
1249
1321
1.378250
ATGCACCTGCTCTCTTGGC
60.378
57.895
0.00
0.00
42.66
4.52
1266
1338
7.615582
TGTGATTTCTCTTATTTTCGCTCAT
57.384
32.000
0.00
0.00
0.00
2.90
1267
1339
6.402550
GCTGTGATTTCTCTTATTTTCGCTCA
60.403
38.462
0.00
0.00
0.00
4.26
1269
1341
5.645497
AGCTGTGATTTCTCTTATTTTCGCT
59.355
36.000
0.00
0.00
0.00
4.93
1270
1342
5.873732
AGCTGTGATTTCTCTTATTTTCGC
58.126
37.500
0.00
0.00
0.00
4.70
1272
1344
9.928236
GATGTAGCTGTGATTTCTCTTATTTTC
57.072
33.333
0.00
0.00
0.00
2.29
1275
1347
9.053840
CATGATGTAGCTGTGATTTCTCTTATT
57.946
33.333
0.00
0.00
0.00
1.40
1276
1348
7.172875
GCATGATGTAGCTGTGATTTCTCTTAT
59.827
37.037
0.00
0.00
0.00
1.73
1277
1349
6.481313
GCATGATGTAGCTGTGATTTCTCTTA
59.519
38.462
0.00
0.00
0.00
2.10
1279
1351
4.815308
GCATGATGTAGCTGTGATTTCTCT
59.185
41.667
0.00
0.00
0.00
3.10
1280
1352
4.573607
TGCATGATGTAGCTGTGATTTCTC
59.426
41.667
0.00
0.00
0.00
2.87
1281
1353
4.520179
TGCATGATGTAGCTGTGATTTCT
58.480
39.130
0.00
0.00
0.00
2.52
1282
1354
4.888038
TGCATGATGTAGCTGTGATTTC
57.112
40.909
0.00
0.00
0.00
2.17
1284
1356
4.334759
GTCTTGCATGATGTAGCTGTGATT
59.665
41.667
5.49
0.00
0.00
2.57
1285
1357
3.875727
GTCTTGCATGATGTAGCTGTGAT
59.124
43.478
5.49
0.00
0.00
3.06
1286
1358
3.264947
GTCTTGCATGATGTAGCTGTGA
58.735
45.455
5.49
0.00
0.00
3.58
1289
1361
3.688185
ACTTGTCTTGCATGATGTAGCTG
59.312
43.478
5.49
0.00
0.00
4.24
1290
1362
3.947868
ACTTGTCTTGCATGATGTAGCT
58.052
40.909
5.49
0.00
0.00
3.32
1291
1363
5.998454
ATACTTGTCTTGCATGATGTAGC
57.002
39.130
5.49
0.00
0.00
3.58
1292
1364
8.654230
AACTATACTTGTCTTGCATGATGTAG
57.346
34.615
5.49
4.75
0.00
2.74
1293
1365
8.478066
AGAACTATACTTGTCTTGCATGATGTA
58.522
33.333
5.49
9.68
0.00
2.29
1294
1366
7.334090
AGAACTATACTTGTCTTGCATGATGT
58.666
34.615
5.49
7.99
0.00
3.06
1295
1367
7.783090
AGAACTATACTTGTCTTGCATGATG
57.217
36.000
5.49
2.74
0.00
3.07
1296
1368
8.798859
AAAGAACTATACTTGTCTTGCATGAT
57.201
30.769
5.49
0.00
0.00
2.45
1297
1369
7.334421
GGAAAGAACTATACTTGTCTTGCATGA
59.666
37.037
0.00
0.00
0.00
3.07
1298
1370
7.119699
TGGAAAGAACTATACTTGTCTTGCATG
59.880
37.037
0.00
0.00
0.00
4.06
1299
1371
7.168219
TGGAAAGAACTATACTTGTCTTGCAT
58.832
34.615
0.00
0.00
0.00
3.96
1300
1372
6.530120
TGGAAAGAACTATACTTGTCTTGCA
58.470
36.000
0.00
0.00
0.00
4.08
1301
1373
6.874134
TCTGGAAAGAACTATACTTGTCTTGC
59.126
38.462
0.00
0.00
0.00
4.01
1302
1374
8.833231
TTCTGGAAAGAACTATACTTGTCTTG
57.167
34.615
0.00
0.00
0.00
3.02
1304
1376
9.442047
CAATTCTGGAAAGAACTATACTTGTCT
57.558
33.333
0.00
0.00
0.00
3.41
1305
1377
9.220767
ACAATTCTGGAAAGAACTATACTTGTC
57.779
33.333
0.00
0.00
0.00
3.18
1308
1380
9.892130
CCTACAATTCTGGAAAGAACTATACTT
57.108
33.333
0.00
0.00
0.00
2.24
1311
1383
9.268282
AGTCCTACAATTCTGGAAAGAACTATA
57.732
33.333
0.00
0.00
0.00
1.31
1317
1389
6.183361
TGTTCAGTCCTACAATTCTGGAAAGA
60.183
38.462
0.00
0.00
0.00
2.52
1321
1393
5.013079
ACATGTTCAGTCCTACAATTCTGGA
59.987
40.000
0.00
0.00
0.00
3.86
1323
1395
5.702670
ACACATGTTCAGTCCTACAATTCTG
59.297
40.000
0.00
0.00
0.00
3.02
1336
1408
7.699391
GGTATCAATCAATCAACACATGTTCAG
59.301
37.037
0.00
0.00
35.83
3.02
1338
1410
7.765307
AGGTATCAATCAATCAACACATGTTC
58.235
34.615
0.00
0.00
35.83
3.18
1340
1412
6.885918
TGAGGTATCAATCAATCAACACATGT
59.114
34.615
0.00
0.00
30.61
3.21
1345
1417
5.887598
CCCTTGAGGTATCAATCAATCAACA
59.112
40.000
0.00
0.00
44.32
3.33
1462
1535
4.193334
TCGATCTCGTGCAGGGCG
62.193
66.667
6.56
6.12
40.80
6.13
1732
1806
9.220767
ACTGTCTAGGCTGTAAAAGAAATTTAG
57.779
33.333
4.90
0.00
34.21
1.85
1742
1816
6.659745
TGAACTAACTGTCTAGGCTGTAAA
57.340
37.500
7.34
0.00
0.00
2.01
1754
1828
8.491331
AAATGCATTTTTGTTGAACTAACTGT
57.509
26.923
18.99
0.00
40.05
3.55
1755
1829
9.771915
AAAAATGCATTTTTGTTGAACTAACTG
57.228
25.926
36.98
0.00
45.31
3.16
1967
2042
4.938080
TCGATGGTATTTTCTCTCTCAGC
58.062
43.478
0.00
0.00
0.00
4.26
2033
2118
6.199719
CACAAAGCTGAATTTTGTCTTCCTTC
59.800
38.462
0.00
0.00
44.50
3.46
2132
2223
7.250569
CCACATAATTCTTGTACATGACAACC
58.749
38.462
10.76
0.00
43.30
3.77
2138
2229
5.221106
CCCAGCCACATAATTCTTGTACATG
60.221
44.000
0.00
0.00
0.00
3.21
2222
2313
5.184096
TGTTGTCACTGTTGTAACAATGGTT
59.816
36.000
6.39
0.00
36.83
3.67
2416
2507
4.147449
GCCCCAAGCCGCCAATTC
62.147
66.667
0.00
0.00
34.35
2.17
2631
2722
9.337396
GGTCCCTTTTGAAAAGAAACATATTTT
57.663
29.630
18.59
0.00
0.00
1.82
2712
2803
2.675889
GCAAATGATGAAGGCAACCCAG
60.676
50.000
0.00
0.00
37.17
4.45
2805
2896
0.469917
AGATGGGAATGGCACCTACG
59.530
55.000
0.00
0.00
0.00
3.51
2883
2974
2.224426
TGCGTTGGATGTTCTGGTTACT
60.224
45.455
0.00
0.00
0.00
2.24
2901
2992
0.937304
GTGTACCACATAGGCATGCG
59.063
55.000
12.44
0.00
43.14
4.73
2913
3004
1.646912
TCGGGAAAGGATGTGTACCA
58.353
50.000
0.00
0.00
0.00
3.25
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.