>input_sequence_63061
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-------------------ATGAGGCCGTACTCGCCGAATCTCCGGCAAGCCGCTGCCGGCGCCGGCGCCACCAG-----
-------CGCCCCCCTTGCAGCAGCTCTCGGCAAGGTGCGCACTTCCACTCGTGGCAGCCTTTTATTTTCCAACCATTTC
ATCGTCCCTTGCTGCACTGACCGATCCAACTTGTGCTGTTGTGCGCAGAGTTCTTCGAGCTCCCTTATCCATGGCCGTCT
CAGCTTCGGCCACACGTTGCTGCAGACACCGAACCACCGCGCCAAGAGAGCAGGTGCATGAGCGAAAATAAGAGAAATCA
CAGCTACATCATGCAAGACAAGTATAGTTCTTTCCAGAATTGTAGGACTGAACATGT-GTTGATTGATTGATACCTCAAG
GGTGGGCGGTGCGGGTGCTTCCCCTGACGGAGGAGAACGTGGAGAGGGTGCTGGACGAGGTGCGGCCGAGCCTGATGCGG
GACGGAGGCAACGTCGCCCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCATGCTCCAGGGCGCCTGCGGCTCCTGCCC
CAGCTCCACCATGACGCTCAAGATGGGAATCGAGTCCCGCCTCCGTGACAAGATCCCCGAGATCCTCGAGGTCGAGCAGA
TCCACGACACCGAGACCGGGCTTGAGCTCAACACAGAGAACGTCGAGAAGGTCAGCCAGATGCTT-CGTGCTCACTCACT
GATCAATGCTCCATTGTGCATGCCACTTGTCTCTTTTCTGAGCCTCTAAATTTCTTTTACAGCCTAGACAGTTAGTTCAA
CAAAAATGCATTTTT-TATTGATCAAACTGTGAATCTGAAGTTTGTCCAATGTTGTAGCTGCTAGATGAGATCAGGCCGT
ACCTTTCCGGCACCGGAGGTGGAAGCCTTGAGCTTGTTCAGATTGACGGTTTCGTCGTCAAGATTCAAATCAGTGGACCT
GCAGCAGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAGCTGAGAGAGAAAATACCATCGATCCTGGCTGTTCAGTT
GACAGAGTAG----------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G421500
GGTGGGAGAGTTTGGAGATGTGGAGAATCAGGAGTGGGAGAGAGAGAGGGGGGGGGTTTGGGGAGGACACCAAATAAGGA
GCAGCACCAGCGGGCAGCGGCCAAATAATGGCGAGGCGACTGTCGCGCTCGCCCCCGAGCCCCGCCCGACAGGCTACCTG
CCGCCGATCCCTTTCCTCGCTGTCTTCGTCGTCCGGGCAATCTCTTAATGAGTTTATTACTGCGTGTGC-----------
-GCGCGCTTGGTGGCCAGCACAAACAACATCAAACTGGCCGGACGGACGGATCACATGGACCACACCACGTACACCACAC
CACCACCCCGTGGCAACCCTGTCCCGGTCGGTGTTCACATACGTACTACCAGCTTTG----------------GTCCTTG
GATGCCCCCGGGTTTGGACATAGATTATTGGTGCCCTTTTGGACCTTTCCCGGCCTAATTTTCTGCTAGCTCCTCCCCCT
TGGAGTGGATCGCAAAGTGGTGTCCAGGGCGTGGTGATATGGGTATCTTATCTGTGACCGTCGTCATGCTATGCTTGATG
GTTCCCTTTAACTCTCTACTCTGAGAATGAGTGCTCAACCTTTCTGCAGACAAAAAAAAACTGTAAGCGCATCAATGATT
TGGTCTAGTTTGAGATGGACTGGGTTCCACCATTTTTTGCGCTTTACACATACTGCACAGTGAAAAACTGCTTTTGTGCA
AAGGCATGATGCAGTT-TTTTAGGGATTTGTTTTGCAGAGTCTAGACGCCTCTTTTCTTACCTTTTTCTTTTTCTTTTTT
---------TGAGAATCAGACGCCTCTTTGCAGTAGGCTT-TTCAGTTCGATCATGGGCCCTAGGCCCTGGAGTCGATGG
GCCACATTAGGCCCAACGAACCTTCACCTTGGTGAAAGGTGAACCACATC-----CA----GAAGCGAAAAGGAATCACG
AACGGGTGAGCCTGCCTACGGCTGGCTCG-------ACATCCACGACACACTCCCCCCGCAAACCCTCGCGGC----TAG
CAAGCAAAATCGGCTTCAGATGAGGCCGTACTCGCCGAATCTCCGGCAAGCCGCTGCCGGCGCCGGCGCCACCAG-----
-------CGCCCCCCTTGCAGCAGCTCTCGGCAAGGTGCGCACTTCCACTCGTGGCAGCCTTTTATTTTCCAACCATTTC
ATCGTCCCTTGCTGCACTGACCGATCCAACTTGTGCTGTTGTGCGCAGAGTTCTTCGAGCTCCCTTATCCATGGCCGTCT
CAGCTTCGGCCACACGTTGCTGCAGACACCGAACCACCGCGCCAAGAGAGCAGGTGCATGAGCGAAAATAAGAGAAATCA
CAGCTACATCATGCAAGACAAGTATAGTTCTTTCCAGAATTGTAGGACTGAACATGT-GTTGATTGATTGATACCTCAAG
GGTGGGCGGTGCGGGTGCTTCCCCTGACGGAGGAGAACGTGGAGAGGGTGCTGGACGAGGTGCGGCCGAGCCTGATGCGG
GACGGAGGCAACGTCGCCCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCATGCTCCAGGGCGCCTGCGGCTCCTGCCC
CAGCTCCACCATGACGCTCAAGATGGGAATCGAGTCCCGCCTCCGTGACAAGATCCCCGAGATCCTCGAGGTCGAGCAGA
TCCACGACACCGAGACCGGGCTTGAGCTCAACACAGAGAACGTCGAGAAGGTCAGCCAGATGCTT-CGTGCTCACTCACT
GATCAATGCTCCATTGTGCATGCCACTTGTCTCTTTTCTGAGCCTCTAAATTTCTTTTACAGCCTAGACAGTTAGTTCAA
CAAAAATGCATTTTT-TATTGATCAAACTGTGAATCTGAAGTTTGTCCAATGTTGTAGCTGCTAGATGAGATCAGGCCGT
ACCTTTCCGGCACCGGAGGTGGAAGCCTTGAGCTTGTTCAGATTGACGGTTTCGTCGTCAAGATTCAAATCAGTGGACCT
GCAGCAGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAGCTGAGAGAGAAAATACCATCGATCCTGGCTGTTCAGTT
GACAGAGTAGAAACA----------TGTGCATCAATCGAAGGAAGACAAAATTCAGCTTTGTGATTACGTTTCCATGTCA
GTACTTCAGTCTTTTAATTCT---GAATCACTGCAGTGAAA---TACTAAACATACTAATACGGTTGTCATGTACAAGAA
TTATGTGGCTGGGAGAGAAGAAAACTCATGTCGCCATTTTAAGTCTGAAAGATATAATTCAACAAAACTTTCAACCATTG
TTACAACAGTGACAACACTTTCAGACTTCCAGTGCATTCATTCCCTTGGCAAAGGCTATGCAAACATTTTCTGCAGACCT
GGAATCTTCAGTTTCTCTAGTGGCACCTGGCTCCACAAAAATTCCTTCTCGGTGTCTCAAACTCTTTATCAACTCAAAGA
TTCTCCAATCTACATATATTTCTCTCGAATTGGCGGCTTGGGGCCATCTCTTTATTCCCTGTTTGTCCCAGTCAAAGCGA
GTTAGGTCATTGCAAGCCTATCTCTTTATTCCCTGTTTGCCCCAGTAAAAGCAAGTTTGTTCTTTGCAACAGCCAACAGT
TCACCCTCGACATCAGAGGGTATAAACAGAGACCTTTGCTTAAACCACGCAGGCTTGGAAATTTTACATTGTCCAAGAAA
TAAAATATGTTTCTTTTCAAAAGGGACCACAAGAGGGTTGATAGCTTCACGCAGCTTCTTCTTCAGCTTGATGCTCCTCC
AACTGGGTTGCCTTCATCATTTGCCTAATCTCGTCAATCTTCCCAAACTCCCGCTTCTTCTTCAAGAACCCTTCCAAAAC
CCTGAATGCACGCTCCGTAGGTGCCATTCCCATCTCAACCAGCTCCCGGAAGCACCTATATGCTTCACCAACCACATCTC
TGCAGCATAAACCAGTAACCAGAACATCCAACGCATGCCTATGTGGTACACATCCTTTCCCGATCAGATAATCCCACAGC
TCCAGGCCAAGATCCGGTCGCCCATTCTCGCAAAAGACCTTCATGAGCAGCATTGTCGTCCTGGTT
>chr7B_1
GGTGGGAGAGTTTGGAGATCTGGAGAATCAGGCGTGGTGGAGAGA-------GGGGTTCGTGGAGGACACCAAATAAGGA
GCAGCACCAGCGAGGAGCGGCCAAATAATGGCGAGGCGACTGTCGCGCTCCTCCCCGAGCCCCGCCCGACAGGCTACCTG
CCGCCGATCCCTTTCCTCGCTGTCTTCGTCGTCCGGGCAATCTCTTAATGAGC---TTACTGCGTGTGC-----------
-GCGCGCTTGGTGGCCAGCACAAACAACATCAAACTGGC------------TCACATGG--------------ACCACAC
CACCACCCCGTGGCAACCGTGTCCCGGTCGGTGTTCACATACGTACTACGTACCAGCTTTGGTCCGTCCGTCCGTCCTTG
GATGCCCCCGGGTTTGGGCATAGATTATTGGTGGCCTTTTGGACCTTTCCCGGCCTAATTTTCTGCTAGCTCCTCCCCCT
TGGAGTGGATCGCAAAGTGGTTTCCAGGGCGTGGTGATATGGGTATCTTATCTGTGACCGTCGTCATGCTATGCTTGATG
GTTCCCTTTAACTCTCTGCTCTGAGAATGAATGCTCGACCTTTTTGCAGAC--AAAAAAACTGTAAGCGCATCAATGATT
TGGTCTAGTTTGAGATGGACTGGGTTCCACCATTTTTTGCGCCTTACACATACTGCACAGTGAAAAACTGCTTTTGTGCA
AAGACAGGATGCG--T-TTTTAGGGATTTGTTTTGCAGAGTCTAGGCGACTCTTTC------------------------
------------------------------CAGTAGGCTTCTTCAGTTCGGTCATGGGCCCTGGGCCCTGGAGACGATGG
GCCACATTAGGCCCAACGAACCC------TGGTGAAAGGTGAAACCACATCCATCCAGCAGGAAGCGAAAAAGAATCATG
AACGGGTGAGCCTGCCTGCCTACGGCTGGCCGGACAACATCCACGACAC-----CCGCGCAAACCCTCGCGGC----TAG
CAAGCGAAATCGGCTTCAGATGAGGCTCCACTCGCCGAGTCTCCAGCAAGCCGCTGCAGGCGCCGGCGCGGGCGC-----
-CACCAACGCCCCCTTTGCAGCAGCTCTCGGCAAGGTGCGTACTTCCACCCACCGCAGCCTCTTACTTTCAAACCATTTC
CTCTTCCCCTGCTGCACCGACCGATCCTACTTGTGCTGTTGTGCGCAGAGTTCTTCGAGCTCCCTTATCCATGGCCGTCT
CAGCTTCGGCCACGCGTCGCTGCAGACACCGAACCACCGCACCAAGAGAGCAGGTGCGCGCACAAAGGAATCCAACTACA
GC------------------AGCATAGTACTTGCTAGAATTGTAGGATTAACCATGCGGTTGATTGATTGATACCTGAAG
GGTGGGCGGTGCGGGTGCTTCCCCTGACGGAGGAGAACGTGGAGAGGGTGCTGGACGAGGTGCGGCCGAGCCTGATGCGG
GACGGAGGCAACGTGGCCCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCATGCTCCAGGGCGCCTGCGGCTCCTGCCC
CAGCTCCACCATGACGCTCAAGATGGGAATTGAGTCCCGCCTCCGTGACAAGATCCCCGAGATCCTCGAGGTCGAGCAAA
TCCACGACACCGAGACCGGGCTTGAGCTCAACACAGAGAACGTCGAGAAGGTCAGCCACATGCTTGCGTGCTCACTCACT
GATCAATGCTCCATTGTGCATGCCACTTGTCTCCTTTCTGAGCCTGTAAATTTCTATTACAGCCTAGGTAGTTAGTTCAA
CAAATATGCATTTTTCTATTGATAAAACTGCGAATCTGAAGTTTGTACAATGTTGTAGGTGCTAGATGAGATCAGGCCGT
ACCTTTCCGGCACCGGAGGTGGAAGCCTCGAGCTCGTTCAGATCGACGGTTTTATCGTCAAGATTGAAATCAGTGGGCCT
GCAGCAGGTGTAATGACAGTACGTGTGGCTGTAACACAAAAACTGAGAGAGAAAATACCATCGATCCTGGCTGTTCAGTT
GACAGAGTAGAAAGC----------TGTGCATCAATCAAAGGAAGACAAAATTCAGCTTTGTGATTACGTTTCCATGTCA
GTACTTCAGTATTTCAGTTCT---GAATCACTGCAGTGAAATACTACTAAACATACTAATACAGTTGTTATGTACAAGAA
TTATGTGGCTGGGAGAGTAGAAAACTCATGTCACCG--TTAAGTCTGAAAGATATAATTCAACAAAACATTCGACCATTG
TTACAACAGTGACAACACTTTCAGACTTCCAGTGCATTCATTCCCTTGGCAAAGGCTAAGGCAACATTTTATGCAGACCT
GGAATATTCAGTTTCTCTAGTGGCACCTGGCTCCACAAAAATTCCTTCTCGGTGTCTCAAACTCTTTATCAACTCAAAGA
TTCTCCAATCTATGTATATTTCTCTCAAATTGGCGGCTTGAGGCCATCTCTTTATTCCCTGTTTGTCCCAGTCAAAGCGA
GTTAGGTCATTGCAAGCCTATCTCTTTATTCCCTGTTTGCACCAGTAAAAGCAAGTTTGTTCTTTGCAACGGCCAACATT
TCACCCTCGACATCAGAGGGTATAAACAGAGACCTTTGCTTAAACCACGCAGGCTTGGAAATTTTACATGGTCCAAGAAA
T-AAATATGTTTCTTTTCAAAAGGGCCCACAGGAGGGTTGATAGCTTCACGCAGCTTCTTCTTCAGCTTGATGCTCCTCC
AATTGGATAGCCTTCATCATTTGCCTAATCTCGTCAATCTTCCCAAACTCCCGCTTCTTCTTCAAGAACCCTTCCAAAAC
CCTGAATGCACGCTCTGTAGGTGCCATTCCCATCTCAACCAGCTCCCGGAAGCACCTATATGCTTCACCAACCACATCTC
TGCAGCATAAACCGGTAACCAGAACATCCAATGCATGCCTATGAGGTACACATCCTTTCCCGATCAGATAATCCCACAGC
TCCAGGCCAAGATCCGGCCGCCCATTCTCGCAAAAGACCTTCATGAGCAGCATTGTCGTCCTGGTT
>chr7A_68
-------------------------------------------------------------------CACCAAATAAGGA
GCAGCACCAGCGGGCAGCGGCCAAATAATGGCGAGGCGACTGTCGCGCTCGCCCCGGAGGCCCGCCCGACAGGCTACCTG
CCGCCGATCCCTTTCCTCGCTGTCTTCGTCGTCCGGGCAATCTCTTAATGAGC---TTACTGCGTGTGCGTGCGTCTGTG
TGCGCGCTTGGTGGCCAGCAGAAACAACGTCAAACTGGCTGGACGGACGGATCACATGG--------------ACCACAC
CACCACCCCGTGGCAACCCTGTCCCGGTCGGTGTTCGCATACG-------------------------------TCCTTG
GATGCTCCCGGGTTTGGGCATAGATTATTGGTGGCCTTTTGGACCTTTCCCGGCCTAATTTTCTGCTGGCTCCTCGCTTG
-GGAGTGGATCGCAAAGTGGGTTTCAGGGCGTGGTGATATGGGTATCTTATCTGTGACCGTCGTCATGCTATGCTTGATG
GTTCCCTTTAACTCTCTACTCTGAGAATGAGTGCTCAACCTTTTTGCAGACAGAAAAAAACTGTAAGCGCATCAATGATT
TGGTCTAGTTTGAGATGGACTGGGTTCCGCCATTTTTTGCGCTTTACACATACTGCACAGTGAAAAACTGCTTTTGTGCA
AAGACAGGATGCAGTTCTTTTAGGGATTTGTTTTGCAGAGTCTAGACGCCTCTTTTCTTACCTTTTTCTCTTTTTTTCTT
CTTTTTTTTTGAGAAACAGACGCCTCTTTTCAGTAGGCTT-TTCAGTTCGATCATGGGCCCTAGGCCCCGGAGACGATGG
GCCACATTAGGCCCAACGAACCTTCACCTTGGTGAAAGGTGAACCACATCCTCTCCA----GAAGCGAAAAGGAACCACG
AACGGGTGAGCCTGCCTACGGCTGGCTCG-------ACATCCACGACACACTCCCCACGCAAACCCCTCGCACCTAGTAG
CAAGCAAAATCGGCTTCAGATGAGGCTCTACTCGCCGAATCTCCGGCAAGCCGCCGCAGGCCCCGGCGCCGGGTCTGGCG
TCACCAACGCCCCCTTTGCAGCAGCTCTCGGCAAGGTGCGTACTTCCACCCACCGCACCCTCTTATTTTCAAACCATTTC
CTCTTCCGCTGCTGCACCGACCGATCCTACTTGTGCTGTTGTGCGTAGAGTTCTTCGAGCTCCCTTATTCATGGCCGTCT
CAGCTTCGGCCACGCGTCACTGCAGACACCGAACCACCGCACCAAGAGAGCAGGTGCGCGCACAAAGGAATCCAACTACA
GC------------------AGCATAGTACTTGCTAGAATTGTAGGATTAACCATGC-GTTGATTGATTGATACCCGAAG
GGTGGGCGGTGCGGGTGCTTCCCCTGACGGAGGAGAACGTGGAGAGGGTGCTGGATGAGGTGCGGCCGAGCCTGATGCGG
GATGGAGGCAACGTGGCCCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCATGCTCCAGGGCGCCTGCGGCTCCTGCCC
CAGCTCCACCATGACGCTCAAGATGGGAATCGAGTCCCGCCTCCGTGACAAGATCCCCGAGATCCTTGAGGTCGAGCAGA
TCCACGACACCGAGACCGGGCTTGAGCTCAACACAGAGAATGTCGAGAAGGTCAGCCACATGCTTGCGTGCTCACTCACT
GATCAATGCTCCATTGTGCATGCCACTTGTCTCTTTTCTGAGCCTGTAAATTTCTGTTACAGCATAGGTAGTTTGTTGAA
CAAAAATGCATTTTT-TATTGATCAAACTGTGAATCTGAAGTTTGTCCAATGTTGTAGCTGCTAGATGAGATCAGGCCGT
ACCTTTCCGGCACCGGAGGTGGAAGCCTTGAGCTTGTTCAGATTGACGGTTTCGTCGTCAAGATTCAAATCAGTGGACCT
GCAGCAGGTGTAATGACAGTACGTGTAGCTGTAACCCAAAAACTGAGAGAGAAAATACCATCGATCCTGGCTGTTCAGTT
GACAGAGTAGAGACATAAATTCAGTTGTGCATCAATCAAAGGAAGACAATATTCAGCTTTGTGATTACGTTTCCATGTCA
GTACTTCAGTCTTTTAGTTCTAATGAATCACTGCAGTGAAA---TACTAAACATACTAATACAGTTGTTATGTACAAGAA
TTATGTGGCTGGGAGAGAAGAAAACTCATTTCACCG--TTAAATCTGAAAGGTATAGTTCAACAAAACTTTCGACCATTG
TTACAACAGTGACAACACTTTCAGACTTCCAGTGCATTCATTCCCATGGCAAAGGCTATGCAAACATTTTCTGCAGACCT
GGAATCTTCAGTTTCTCTAGTGGCACCTGGCTCCACAAAAATTCCTTCTCAGTGTCTCAAACTCTTTATCAACTCAAAGA
TTCTCCAATCTACATATATTTCTCTCAAATTGGCGGCTTGGGGCCATCT-TTTATTCCCTGTTTGTCCCAGTCAAAGCGA
GTTAGGTCATTGCAAGCCTATCTCTTTATTCCCTGTTTGCCCCAGTAAAAGCAAGTTTGTTCTTTGCAACAGCCAACAGT
TCACCCTCGACATCAGAGGGTATAAACAGAGACCTTTGCTTAAACCACGCAGGCTTGGAAATTTTACATTGTCCAAGAAA
T-AAACACGTTTCTTTTCAAAAGGGACCACAAGAGGGTTGATAGCTTCACGCAGCTTCTTCTTCAGTTTGATGCTCCTCC
AATTGGGTTGCCTTCATCATTTGCCTAATCTCATCAATCTTCCCAAACTCCCGCTTCTTCTTCAAAAACCCTTCCAAAAC
CCTGAATGCGCGCTCTGTAGGTGCCATTCCCATCTCAACCAGCTCCCGGAAGCACCTATATGCTTCACCAACCACATCTC
TGCAGCATAAACCGGTAACCAGAACATCCAATGCATGCCTATGAGGTACACATCCTTTCCCGATCAGATAATCCCACAGC
TCCAGCCCAAGATCCGGTCGCCCATTCTCGCAGAAGACTTTCATGAGCAGCATTGTCGTCCTGGTT
>SNPs
-------------------S------------S----SS------SSSSSSS------S-S-------------------
--------------------------------------------------------------------------------
----------------------------------------------------SSSS------------------------
---------------------------------------S-------------------SSSSSSSSSSSSSS-------
-------------------------------------------------SSS-SSSS-----------------------
-----------------S---------------S----------------------------------------------
---------------------S----------------------------------------------------------
-------------------------------------------S--------S---------------------------
--------------------------------------------------------------------------------
---S--S--------------------------------------------------------------S---S---S--
---------------S-------------S-------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------SS-----------------------------S------------SS-SS-----
--------------S-------------------------S--------S-SSS-------S--------S---------
S--S----S--------S---------S----------------------------------------------------
-------------S---S----------------------S----------------SS-SS-S--SSS-SSSS-SSS--
SSSSSSSSSSSSSSSSSSSS--S-----S---S-S------------S-S-S----S-------------------S---
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
---------------------------------------------S---------S-----------SS-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
-------------------------------------S------------------------------------------
----------------S---------------------------------------------S-----S-----------
--------------------------------S--SSS----------------------------------S-------
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--------------------------S-----------------------------------------------------
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-S------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
---------------S----------------------------------------------------------------
-------------S-----------------S-----------S------------------------------------
------------------------------------------------------------------
>forward_312
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----------------------------------------------------CACATGGACCACACCACGTA--------
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>reverse_1218
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-----------------TGACCGATCCAACTTGTGCT-------------------------------------------
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>forward_313
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-----------------------------------------------------ACATGGACCACACCACGTAC-------
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>reverse_1228
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---------------------------AACTTGTGCTGTTGTGCGC----------------------------------
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>forward_502
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--GAGTGGATCGCAAAGTGGTG----------------------------------------------------------
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>reverse_1358
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-----------------------------------------------------------------------------TCA
CAGCTACATCATGCAAGAC-------------------------------------------------------------
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>forward_1341
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-----------------------------------------CCAAGAGAGCAGGTGCATGA-------------------
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>reverse_2896
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---------------CGTAGGTGCCATTCCCATCT---------------------------------------------
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------------------------------------------------------------------
