Multiple sequence alignment - TraesCS7D01G403200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G403200 chr7D 100.000 3045 0 0 1 3045 520405949 520402905 0.000000e+00 5624
1 TraesCS7D01G403200 chr7A 90.209 2206 124 42 599 2762 596719826 596717671 0.000000e+00 2793
2 TraesCS7D01G403200 chr7B 93.013 1646 64 21 753 2394 553628906 553627308 0.000000e+00 2355
3 TraesCS7D01G403200 chr7B 92.353 170 12 1 3 171 553630077 553629908 1.090000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G403200 chr7D 520402905 520405949 3044 True 5624 5624 100.000 1 3045 1 chr7D.!!$R1 3044
1 TraesCS7D01G403200 chr7A 596717671 596719826 2155 True 2793 2793 90.209 599 2762 1 chr7A.!!$R1 2163
2 TraesCS7D01G403200 chr7B 553627308 553630077 2769 True 1298 2355 92.683 3 2394 2 chr7B.!!$R1 2391

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 485 0.036306 TCCCTTTCCCTCGCAGAAAC 59.964 55.0 0.0 0.0 34.09 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 2628 0.249322 ACCGACCAAACGAGACAGTG 60.249 55.0 0.0 0.0 35.09 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.396974 TGGCTGGCAACTTTGAAGGT 60.397 50.000 0.00 0.00 37.61 3.50
37 38 3.445096 GCTGGCAACTTTGAAGGTATCAT 59.555 43.478 0.00 0.00 35.89 2.45
49 50 3.814005 AGGTATCATACACCACCGTTC 57.186 47.619 0.00 0.00 38.62 3.95
59 60 0.539986 ACCACCGTTCTGTTGTCAGT 59.460 50.000 0.00 0.00 41.91 3.41
69 70 6.346919 CCGTTCTGTTGTCAGTATCTCTTTTG 60.347 42.308 0.00 0.00 41.91 2.44
97 98 6.183360 GCATATTTGCTGGGGTTATTTACCTT 60.183 38.462 0.35 0.00 45.02 3.50
103 104 5.104652 TGCTGGGGTTATTTACCTTAGAGAC 60.105 44.000 0.00 0.00 46.86 3.36
105 106 6.409349 GCTGGGGTTATTTACCTTAGAGACAT 60.409 42.308 0.00 0.00 46.86 3.06
127 128 2.164624 TGCCGTTATGCGCCTTTTAATT 59.835 40.909 4.18 0.00 39.71 1.40
141 142 7.008810 GCGCCTTTTAATTTGAACGATAAATGA 59.991 33.333 0.00 0.00 0.00 2.57
152 153 6.951643 TGAACGATAAATGATCATCAGCAAG 58.048 36.000 9.06 2.41 33.73 4.01
163 165 4.924305 TCATCAGCAAGCAAATATTCCC 57.076 40.909 0.00 0.00 0.00 3.97
171 173 4.440112 GCAAGCAAATATTCCCGCTTAGTT 60.440 41.667 15.41 0.00 42.60 2.24
173 175 4.781934 AGCAAATATTCCCGCTTAGTTCT 58.218 39.130 2.10 0.00 0.00 3.01
174 176 4.576463 AGCAAATATTCCCGCTTAGTTCTG 59.424 41.667 2.10 0.00 0.00 3.02
175 177 4.789802 GCAAATATTCCCGCTTAGTTCTGC 60.790 45.833 0.00 0.00 0.00 4.26
176 178 3.838244 ATATTCCCGCTTAGTTCTGCA 57.162 42.857 0.00 0.00 0.00 4.41
177 179 2.489938 ATTCCCGCTTAGTTCTGCAA 57.510 45.000 0.00 0.00 0.00 4.08
178 180 1.808411 TTCCCGCTTAGTTCTGCAAG 58.192 50.000 0.00 0.00 0.00 4.01
179 181 0.973632 TCCCGCTTAGTTCTGCAAGA 59.026 50.000 0.00 0.00 44.68 3.02
180 182 1.555075 TCCCGCTTAGTTCTGCAAGAT 59.445 47.619 0.00 0.00 46.36 2.40
181 183 2.027192 TCCCGCTTAGTTCTGCAAGATT 60.027 45.455 0.00 0.00 46.36 2.40
182 184 2.096496 CCCGCTTAGTTCTGCAAGATTG 59.904 50.000 0.00 0.00 46.36 2.67
183 185 2.744202 CCGCTTAGTTCTGCAAGATTGT 59.256 45.455 0.00 0.00 46.36 2.71
184 186 3.189287 CCGCTTAGTTCTGCAAGATTGTT 59.811 43.478 0.00 0.00 46.36 2.83
185 187 4.153986 CGCTTAGTTCTGCAAGATTGTTG 58.846 43.478 0.00 0.00 46.36 3.33
186 188 4.479619 GCTTAGTTCTGCAAGATTGTTGG 58.520 43.478 0.00 0.00 46.36 3.77
187 189 4.479619 CTTAGTTCTGCAAGATTGTTGGC 58.520 43.478 0.00 0.00 46.36 4.52
188 190 1.615392 AGTTCTGCAAGATTGTTGGCC 59.385 47.619 0.00 0.00 46.36 5.36
189 191 0.597568 TTCTGCAAGATTGTTGGCCG 59.402 50.000 0.00 0.00 46.36 6.13
190 192 0.250684 TCTGCAAGATTGTTGGCCGA 60.251 50.000 0.00 0.00 38.67 5.54
191 193 0.813184 CTGCAAGATTGTTGGCCGAT 59.187 50.000 0.00 0.00 34.07 4.18
192 194 2.016318 CTGCAAGATTGTTGGCCGATA 58.984 47.619 0.00 0.00 34.07 2.92
193 195 1.742831 TGCAAGATTGTTGGCCGATAC 59.257 47.619 0.00 0.00 0.00 2.24
194 196 1.065551 GCAAGATTGTTGGCCGATACC 59.934 52.381 0.00 0.00 0.00 2.73
195 197 2.643551 CAAGATTGTTGGCCGATACCT 58.356 47.619 0.00 0.00 0.00 3.08
196 198 3.016736 CAAGATTGTTGGCCGATACCTT 58.983 45.455 0.00 0.00 0.00 3.50
197 199 3.366052 AGATTGTTGGCCGATACCTTT 57.634 42.857 0.00 0.00 0.00 3.11
201 203 3.420300 TGTTGGCCGATACCTTTGTTA 57.580 42.857 0.00 0.00 0.00 2.41
202 204 3.075884 TGTTGGCCGATACCTTTGTTAC 58.924 45.455 0.00 0.00 0.00 2.50
213 215 4.223320 ACCTTTGTTACAAACGCATGAG 57.777 40.909 6.41 0.00 0.00 2.90
217 219 4.725556 TTGTTACAAACGCATGAGTCTC 57.274 40.909 1.45 0.00 0.00 3.36
218 220 2.729360 TGTTACAAACGCATGAGTCTCG 59.271 45.455 1.45 0.00 0.00 4.04
219 221 2.717580 TACAAACGCATGAGTCTCGT 57.282 45.000 1.45 3.32 38.15 4.18
227 229 4.995124 ACGCATGAGTCTCGTAGTAATTT 58.005 39.130 0.00 0.00 34.41 1.82
229 231 5.288712 ACGCATGAGTCTCGTAGTAATTTTG 59.711 40.000 0.00 0.00 34.41 2.44
236 238 7.806487 TGAGTCTCGTAGTAATTTTGTACTGTG 59.194 37.037 0.00 0.00 35.85 3.66
250 253 8.833231 TTTTGTACTGTGAAAATCTCTAGAGG 57.167 34.615 19.67 2.83 0.00 3.69
255 258 7.251321 ACTGTGAAAATCTCTAGAGGAACAT 57.749 36.000 19.67 2.89 0.00 2.71
256 259 7.327214 ACTGTGAAAATCTCTAGAGGAACATC 58.673 38.462 19.67 11.88 0.00 3.06
299 326 3.679389 CAGTTGAAGCACTGTCCCTATT 58.321 45.455 0.00 0.00 39.59 1.73
303 330 2.375174 TGAAGCACTGTCCCTATTGGTT 59.625 45.455 0.00 0.00 34.77 3.67
307 334 4.526970 AGCACTGTCCCTATTGGTTTATG 58.473 43.478 0.00 0.00 34.77 1.90
324 351 3.466879 GCAAATGCTGCGCCTTTC 58.533 55.556 4.18 0.00 42.37 2.62
328 355 1.199789 CAAATGCTGCGCCTTTCTGTA 59.800 47.619 4.18 0.00 0.00 2.74
331 358 0.670546 TGCTGCGCCTTTCTGTAGAC 60.671 55.000 4.18 0.00 0.00 2.59
332 359 1.687494 GCTGCGCCTTTCTGTAGACG 61.687 60.000 4.18 0.00 0.00 4.18
345 372 0.889306 GTAGACGAAGCTCCACCACT 59.111 55.000 0.00 0.00 0.00 4.00
347 374 2.029844 GACGAAGCTCCACCACTGC 61.030 63.158 0.00 0.00 0.00 4.40
356 389 2.579201 CACCACTGCCCCGTAGAG 59.421 66.667 0.00 0.00 0.00 2.43
375 408 3.009584 AGAGGAATCTCCAACAAACCTCC 59.990 47.826 0.00 0.00 42.03 4.30
381 414 0.923358 TCCAACAAACCTCCACCACT 59.077 50.000 0.00 0.00 0.00 4.00
387 420 2.158813 ACAAACCTCCACCACTACACAG 60.159 50.000 0.00 0.00 0.00 3.66
390 423 3.185880 ACCTCCACCACTACACAGTAT 57.814 47.619 0.00 0.00 32.21 2.12
392 425 4.021916 ACCTCCACCACTACACAGTATAC 58.978 47.826 0.00 0.00 32.21 1.47
393 426 4.021229 CCTCCACCACTACACAGTATACA 58.979 47.826 5.50 0.00 32.21 2.29
394 427 4.098044 CCTCCACCACTACACAGTATACAG 59.902 50.000 5.50 0.00 32.21 2.74
395 428 3.446161 TCCACCACTACACAGTATACAGC 59.554 47.826 5.50 0.00 32.21 4.40
396 429 3.194755 CCACCACTACACAGTATACAGCA 59.805 47.826 5.50 0.00 32.21 4.41
397 430 4.322424 CCACCACTACACAGTATACAGCAA 60.322 45.833 5.50 0.00 32.21 3.91
400 433 7.210174 CACCACTACACAGTATACAGCAATAT 58.790 38.462 5.50 0.00 32.21 1.28
401 434 7.710907 CACCACTACACAGTATACAGCAATATT 59.289 37.037 5.50 0.00 32.21 1.28
402 435 7.926555 ACCACTACACAGTATACAGCAATATTC 59.073 37.037 5.50 0.00 32.21 1.75
403 436 8.144478 CCACTACACAGTATACAGCAATATTCT 58.856 37.037 5.50 0.00 32.21 2.40
404 437 9.186323 CACTACACAGTATACAGCAATATTCTC 57.814 37.037 5.50 0.00 32.21 2.87
405 438 9.137459 ACTACACAGTATACAGCAATATTCTCT 57.863 33.333 5.50 0.00 31.45 3.10
425 458 0.736053 TTTTTCCTTTGACGCGTGCT 59.264 45.000 20.70 0.00 0.00 4.40
427 460 2.387125 TTTCCTTTGACGCGTGCTGC 62.387 55.000 20.70 1.49 41.47 5.25
435 468 2.025359 GACGCGTGCTGCAGTATTCC 62.025 60.000 20.70 2.57 46.97 3.01
440 473 1.398390 CGTGCTGCAGTATTCCCTTTC 59.602 52.381 16.64 0.00 0.00 2.62
452 485 0.036306 TCCCTTTCCCTCGCAGAAAC 59.964 55.000 0.00 0.00 34.09 2.78
462 495 4.635765 TCCCTCGCAGAAACAGAAATATTG 59.364 41.667 0.00 0.00 34.09 1.90
465 498 5.447818 CCTCGCAGAAACAGAAATATTGTCC 60.448 44.000 0.00 0.00 34.09 4.02
466 499 5.000591 TCGCAGAAACAGAAATATTGTCCA 58.999 37.500 0.00 0.00 0.00 4.02
467 500 5.088739 CGCAGAAACAGAAATATTGTCCAC 58.911 41.667 0.00 0.00 0.00 4.02
469 502 5.048083 GCAGAAACAGAAATATTGTCCACCA 60.048 40.000 0.00 0.00 0.00 4.17
470 503 6.381801 CAGAAACAGAAATATTGTCCACCAC 58.618 40.000 0.00 0.00 0.00 4.16
473 506 7.390718 AGAAACAGAAATATTGTCCACCACTAC 59.609 37.037 0.00 0.00 0.00 2.73
476 543 5.642063 CAGAAATATTGTCCACCACTACGTT 59.358 40.000 0.00 0.00 0.00 3.99
479 546 3.764237 ATTGTCCACCACTACGTTTCT 57.236 42.857 0.00 0.00 0.00 2.52
484 551 4.171754 GTCCACCACTACGTTTCTCATAC 58.828 47.826 0.00 0.00 0.00 2.39
489 556 5.907945 CACCACTACGTTTCTCATACGATAG 59.092 44.000 0.00 3.69 41.33 2.08
495 562 5.770417 ACGTTTCTCATACGATAGAATCCC 58.230 41.667 2.12 0.00 41.33 3.85
496 563 4.852104 CGTTTCTCATACGATAGAATCCCG 59.148 45.833 0.00 0.00 41.33 5.14
499 566 5.624344 TCTCATACGATAGAATCCCGTTC 57.376 43.478 0.00 0.00 37.69 3.95
503 570 5.303589 TCATACGATAGAATCCCGTTCCTTT 59.696 40.000 0.00 0.00 37.56 3.11
512 579 5.880887 AGAATCCCGTTCCTTTTTCTCATAC 59.119 40.000 0.00 0.00 37.56 2.39
530 597 8.282455 TCTCATACGATAATCTACAATCCTCC 57.718 38.462 0.00 0.00 0.00 4.30
537 604 8.145122 ACGATAATCTACAATCCTCCTTTTCTC 58.855 37.037 0.00 0.00 0.00 2.87
544 611 4.106197 CAATCCTCCTTTTCTCGTACGAG 58.894 47.826 34.21 34.21 43.21 4.18
558 625 6.510536 TCTCGTACGAGAGACACTATAATGA 58.489 40.000 37.30 15.51 45.26 2.57
561 628 7.573627 TCGTACGAGAGACACTATAATGAATG 58.426 38.462 15.28 0.00 0.00 2.67
562 629 7.440255 TCGTACGAGAGACACTATAATGAATGA 59.560 37.037 15.28 0.00 0.00 2.57
566 633 9.900710 ACGAGAGACACTATAATGAATGAATAC 57.099 33.333 0.00 0.00 0.00 1.89
572 639 9.167311 GACACTATAATGAATGAATACATCCCC 57.833 37.037 0.00 0.00 35.50 4.81
573 640 8.894592 ACACTATAATGAATGAATACATCCCCT 58.105 33.333 0.00 0.00 35.50 4.79
643 710 4.649088 GCCCGTGGCTTAAATAAAGAAT 57.351 40.909 7.58 0.00 46.69 2.40
645 712 5.758924 GCCCGTGGCTTAAATAAAGAATAG 58.241 41.667 7.58 0.00 46.69 1.73
650 717 9.849166 CCGTGGCTTAAATAAAGAATAGAAAAA 57.151 29.630 0.00 0.00 37.38 1.94
703 770 1.071385 CCTAGAAGCCGCATCTTCCAT 59.929 52.381 3.01 0.00 42.52 3.41
704 771 2.411904 CTAGAAGCCGCATCTTCCATC 58.588 52.381 3.01 0.00 42.52 3.51
730 1226 8.096414 CCAACCAACATATTTTTCTTCCATCTT 58.904 33.333 0.00 0.00 0.00 2.40
731 1227 9.492973 CAACCAACATATTTTTCTTCCATCTTT 57.507 29.630 0.00 0.00 0.00 2.52
732 1228 9.710900 AACCAACATATTTTTCTTCCATCTTTC 57.289 29.630 0.00 0.00 0.00 2.62
767 1264 5.458451 AAAAAGGAGGAATCCTAGAAGGG 57.542 43.478 0.00 0.00 39.65 3.95
768 1265 2.110753 AGGAGGAATCCTAGAAGGGC 57.889 55.000 0.00 0.00 38.58 5.19
1400 1913 1.041447 AACCCCTCTATGGTCGTCCG 61.041 60.000 0.00 0.00 34.15 4.79
1401 1914 2.728817 CCCTCTATGGTCGTCCGC 59.271 66.667 0.00 0.00 36.30 5.54
1402 1915 1.828660 CCCTCTATGGTCGTCCGCT 60.829 63.158 0.00 0.00 36.30 5.52
1403 1916 1.655329 CCTCTATGGTCGTCCGCTC 59.345 63.158 0.00 0.00 36.30 5.03
1404 1917 1.655329 CTCTATGGTCGTCCGCTCC 59.345 63.158 0.00 0.00 36.30 4.70
1412 1925 4.933064 CGTCCGCTCCGATCTGCC 62.933 72.222 0.00 0.00 0.00 4.85
1447 1960 5.064452 CCTGCATCTGCTGTCTTAAGTTTAG 59.936 44.000 1.63 1.22 42.66 1.85
1525 2042 1.954146 GATGCGTGTGGTGTGTCGT 60.954 57.895 0.00 0.00 0.00 4.34
1526 2043 1.886861 GATGCGTGTGGTGTGTCGTC 61.887 60.000 0.00 0.00 0.00 4.20
1527 2044 3.688330 GCGTGTGGTGTGTCGTCG 61.688 66.667 0.00 0.00 0.00 5.12
1680 2198 2.286301 GCGATCTGAAAAGATCTGCTGC 60.286 50.000 17.42 9.75 41.74 5.25
1714 2232 0.798009 CAATTGGCGGCTAAAGTGCG 60.798 55.000 11.43 0.00 0.00 5.34
1778 2296 5.578336 GCCGTAAGAAGTATTTTACCTCGTT 59.422 40.000 0.00 0.00 43.02 3.85
1786 2304 8.311836 AGAAGTATTTTACCTCGTTGATTCTCA 58.688 33.333 0.00 0.00 0.00 3.27
1825 2343 3.388552 CCTTTTTAGCAAGGGAGGGAT 57.611 47.619 0.00 0.00 39.95 3.85
1826 2344 3.026694 CCTTTTTAGCAAGGGAGGGATG 58.973 50.000 0.00 0.00 39.95 3.51
1830 2348 0.032515 TAGCAAGGGAGGGATGTCGA 60.033 55.000 0.00 0.00 0.00 4.20
1833 2351 1.408822 GCAAGGGAGGGATGTCGATTT 60.409 52.381 0.00 0.00 0.00 2.17
1843 2361 5.118990 AGGGATGTCGATTTCATACACAAG 58.881 41.667 0.00 0.00 0.00 3.16
1888 2407 2.554032 CTCCTTTTTCTTCGTGCCATGT 59.446 45.455 0.00 0.00 0.00 3.21
1942 2461 3.304458 CGATCGATCGGTCAGAATTGGTA 60.304 47.826 34.54 0.00 45.93 3.25
2090 2609 4.521639 TCTTCTAAGTCTCTGTTTGCCGTA 59.478 41.667 0.00 0.00 0.00 4.02
2109 2628 4.024048 CCGTAGCAATGGATTGTTATGACC 60.024 45.833 13.91 0.00 40.63 4.02
2436 2966 3.118920 TGGCATGGAATCTTTGATGCTTG 60.119 43.478 0.00 0.00 40.87 4.01
2459 2989 5.470098 TGAAGCAATGGTGAGAAGTACTTTC 59.530 40.000 10.02 9.71 35.97 2.62
2460 2990 4.327680 AGCAATGGTGAGAAGTACTTTCC 58.672 43.478 10.02 10.56 36.40 3.13
2463 2993 5.351740 GCAATGGTGAGAAGTACTTTCCTAC 59.648 44.000 10.02 7.06 36.40 3.18
2475 3018 8.934023 AAGTACTTTCCTACCATTTTGATTGA 57.066 30.769 1.12 0.00 0.00 2.57
2548 3092 1.405661 GGAGGTCGAAGGTCCATTCAC 60.406 57.143 4.46 0.00 0.00 3.18
2568 3112 2.135933 CTGGTGTGACTTTTCGTCTCC 58.864 52.381 0.00 0.00 43.25 3.71
2570 3114 1.865340 GGTGTGACTTTTCGTCTCCAC 59.135 52.381 0.00 0.00 43.25 4.02
2571 3115 2.483188 GGTGTGACTTTTCGTCTCCACT 60.483 50.000 11.96 0.00 43.25 4.00
2573 3117 4.365723 GTGTGACTTTTCGTCTCCACTTA 58.634 43.478 0.00 0.00 43.25 2.24
2574 3118 4.807304 GTGTGACTTTTCGTCTCCACTTAA 59.193 41.667 0.00 0.00 43.25 1.85
2575 3119 5.292589 GTGTGACTTTTCGTCTCCACTTAAA 59.707 40.000 0.00 0.00 43.25 1.52
2576 3120 5.292589 TGTGACTTTTCGTCTCCACTTAAAC 59.707 40.000 0.00 0.00 43.25 2.01
2577 3121 4.812626 TGACTTTTCGTCTCCACTTAAACC 59.187 41.667 0.00 0.00 43.25 3.27
2579 3123 4.814771 ACTTTTCGTCTCCACTTAAACCTG 59.185 41.667 0.00 0.00 0.00 4.00
2580 3124 3.396260 TTCGTCTCCACTTAAACCTGG 57.604 47.619 0.00 0.00 0.00 4.45
2581 3125 2.322658 TCGTCTCCACTTAAACCTGGT 58.677 47.619 0.00 0.00 0.00 4.00
2582 3126 2.036733 TCGTCTCCACTTAAACCTGGTG 59.963 50.000 0.00 0.00 0.00 4.17
2584 3128 1.073284 TCTCCACTTAAACCTGGTGGC 59.927 52.381 0.00 0.00 47.00 5.01
2585 3129 0.847373 TCCACTTAAACCTGGTGGCA 59.153 50.000 0.00 0.00 47.00 4.92
2597 3141 3.130633 CCTGGTGGCAGCTTTTTAAAAC 58.869 45.455 18.53 0.00 0.00 2.43
2606 3150 5.107989 GGCAGCTTTTTAAAACGAGCTTAAC 60.108 40.000 19.78 13.76 42.46 2.01
2611 3155 8.135529 AGCTTTTTAAAACGAGCTTAACATTCT 58.864 29.630 17.58 0.00 42.46 2.40
2644 3188 3.488678 CACTGTAACTGCATCATAGCTCG 59.511 47.826 0.00 0.00 34.99 5.03
2648 3192 1.579698 ACTGCATCATAGCTCGCTTG 58.420 50.000 0.00 0.00 34.99 4.01
2656 3200 2.095768 TCATAGCTCGCTTGTGTTTTGC 60.096 45.455 0.00 0.00 0.00 3.68
2659 3203 0.780002 GCTCGCTTGTGTTTTGCATG 59.220 50.000 0.00 0.00 0.00 4.06
2660 3204 1.865248 GCTCGCTTGTGTTTTGCATGT 60.865 47.619 0.00 0.00 0.00 3.21
2661 3205 2.604373 GCTCGCTTGTGTTTTGCATGTA 60.604 45.455 0.00 0.00 0.00 2.29
2662 3206 3.228749 CTCGCTTGTGTTTTGCATGTAG 58.771 45.455 0.00 0.00 0.00 2.74
2663 3207 1.715519 CGCTTGTGTTTTGCATGTAGC 59.284 47.619 0.00 0.00 45.96 3.58
2678 3222 6.377327 GCATGTAGCAACATAGTGGTATTT 57.623 37.500 0.00 0.00 44.70 1.40
2679 3223 6.795399 GCATGTAGCAACATAGTGGTATTTT 58.205 36.000 0.00 0.00 44.70 1.82
2683 3227 9.681062 ATGTAGCAACATAGTGGTATTTTAGTT 57.319 29.630 0.00 0.00 44.66 2.24
2687 3231 8.296713 AGCAACATAGTGGTATTTTAGTTTGTG 58.703 33.333 0.00 0.00 0.00 3.33
2689 3233 7.753309 ACATAGTGGTATTTTAGTTTGTGCA 57.247 32.000 0.00 0.00 0.00 4.57
2705 3249 4.439305 TGTGCATTTAACTGGAATCAGC 57.561 40.909 0.00 0.00 44.59 4.26
2714 3258 2.892425 GGAATCAGCACGCCGGAG 60.892 66.667 5.05 3.72 0.00 4.63
2747 3292 2.401766 CCAGTGCTGCTTAAGGGCG 61.402 63.158 4.29 0.00 34.52 6.13
2748 3293 2.045926 AGTGCTGCTTAAGGGCGG 60.046 61.111 4.29 0.00 41.16 6.13
2755 3300 1.175983 TGCTTAAGGGCGGTGTTTGG 61.176 55.000 4.29 0.00 34.52 3.28
2758 3303 0.891904 TTAAGGGCGGTGTTTGGAGC 60.892 55.000 0.00 0.00 0.00 4.70
2763 3308 3.883462 CGGTGTTTGGAGCGCATA 58.117 55.556 11.47 0.00 0.00 3.14
2764 3309 2.167161 CGGTGTTTGGAGCGCATAA 58.833 52.632 11.47 0.00 0.00 1.90
2765 3310 0.519519 CGGTGTTTGGAGCGCATAAA 59.480 50.000 11.47 4.79 0.00 1.40
2766 3311 1.132262 CGGTGTTTGGAGCGCATAAAT 59.868 47.619 11.47 0.00 0.00 1.40
2767 3312 2.529151 GGTGTTTGGAGCGCATAAATG 58.471 47.619 11.47 0.00 0.00 2.32
2768 3313 2.094752 GGTGTTTGGAGCGCATAAATGT 60.095 45.455 11.47 0.00 0.00 2.71
2769 3314 3.574614 GTGTTTGGAGCGCATAAATGTT 58.425 40.909 11.47 0.00 0.00 2.71
2770 3315 3.364621 GTGTTTGGAGCGCATAAATGTTG 59.635 43.478 11.47 0.00 0.00 3.33
2771 3316 3.005261 TGTTTGGAGCGCATAAATGTTGT 59.995 39.130 11.47 0.00 0.00 3.32
2772 3317 4.216472 TGTTTGGAGCGCATAAATGTTGTA 59.784 37.500 11.47 0.00 0.00 2.41
2773 3318 4.614555 TTGGAGCGCATAAATGTTGTAG 57.385 40.909 11.47 0.00 0.00 2.74
2774 3319 2.942376 TGGAGCGCATAAATGTTGTAGG 59.058 45.455 11.47 0.00 0.00 3.18
2775 3320 3.202906 GGAGCGCATAAATGTTGTAGGA 58.797 45.455 11.47 0.00 0.00 2.94
2776 3321 3.625764 GGAGCGCATAAATGTTGTAGGAA 59.374 43.478 11.47 0.00 0.00 3.36
2777 3322 4.275936 GGAGCGCATAAATGTTGTAGGAAT 59.724 41.667 11.47 0.00 0.00 3.01
2778 3323 5.221048 GGAGCGCATAAATGTTGTAGGAATT 60.221 40.000 11.47 0.00 0.00 2.17
2779 3324 5.581605 AGCGCATAAATGTTGTAGGAATTG 58.418 37.500 11.47 0.00 0.00 2.32
2780 3325 5.125417 AGCGCATAAATGTTGTAGGAATTGT 59.875 36.000 11.47 0.00 0.00 2.71
2781 3326 5.229887 GCGCATAAATGTTGTAGGAATTGTG 59.770 40.000 0.30 0.00 0.00 3.33
2782 3327 6.321717 CGCATAAATGTTGTAGGAATTGTGT 58.678 36.000 0.00 0.00 0.00 3.72
2783 3328 7.468441 CGCATAAATGTTGTAGGAATTGTGTA 58.532 34.615 0.00 0.00 0.00 2.90
2784 3329 7.965655 CGCATAAATGTTGTAGGAATTGTGTAA 59.034 33.333 0.00 0.00 0.00 2.41
2785 3330 9.289303 GCATAAATGTTGTAGGAATTGTGTAAG 57.711 33.333 0.00 0.00 0.00 2.34
2786 3331 9.787532 CATAAATGTTGTAGGAATTGTGTAAGG 57.212 33.333 0.00 0.00 0.00 2.69
2787 3332 5.897377 ATGTTGTAGGAATTGTGTAAGGC 57.103 39.130 0.00 0.00 0.00 4.35
2788 3333 4.076394 TGTTGTAGGAATTGTGTAAGGCC 58.924 43.478 0.00 0.00 0.00 5.19
2789 3334 3.359695 TGTAGGAATTGTGTAAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
2790 3335 2.916934 TGTAGGAATTGTGTAAGGCCCT 59.083 45.455 0.00 0.00 0.00 5.19
2791 3336 2.514458 AGGAATTGTGTAAGGCCCTG 57.486 50.000 0.00 0.00 0.00 4.45
2792 3337 1.005924 AGGAATTGTGTAAGGCCCTGG 59.994 52.381 0.00 0.00 0.00 4.45
2793 3338 1.005450 GGAATTGTGTAAGGCCCTGGA 59.995 52.381 0.00 0.00 0.00 3.86
2794 3339 2.369394 GAATTGTGTAAGGCCCTGGAG 58.631 52.381 0.00 0.00 0.00 3.86
2795 3340 0.625849 ATTGTGTAAGGCCCTGGAGG 59.374 55.000 0.00 0.00 39.47 4.30
2806 3351 1.918253 CCTGGAGGGGATTGAGTGG 59.082 63.158 0.00 0.00 0.00 4.00
2807 3352 1.639635 CCTGGAGGGGATTGAGTGGG 61.640 65.000 0.00 0.00 0.00 4.61
2808 3353 0.621571 CTGGAGGGGATTGAGTGGGA 60.622 60.000 0.00 0.00 0.00 4.37
2809 3354 0.046242 TGGAGGGGATTGAGTGGGAT 59.954 55.000 0.00 0.00 0.00 3.85
2810 3355 1.226311 GGAGGGGATTGAGTGGGATT 58.774 55.000 0.00 0.00 0.00 3.01
2811 3356 1.570979 GGAGGGGATTGAGTGGGATTT 59.429 52.381 0.00 0.00 0.00 2.17
2812 3357 2.023984 GGAGGGGATTGAGTGGGATTTT 60.024 50.000 0.00 0.00 0.00 1.82
2813 3358 3.026694 GAGGGGATTGAGTGGGATTTTG 58.973 50.000 0.00 0.00 0.00 2.44
2814 3359 2.654385 AGGGGATTGAGTGGGATTTTGA 59.346 45.455 0.00 0.00 0.00 2.69
2815 3360 2.760650 GGGGATTGAGTGGGATTTTGAC 59.239 50.000 0.00 0.00 0.00 3.18
2816 3361 3.564352 GGGGATTGAGTGGGATTTTGACT 60.564 47.826 0.00 0.00 0.00 3.41
2817 3362 3.445096 GGGATTGAGTGGGATTTTGACTG 59.555 47.826 0.00 0.00 0.00 3.51
2818 3363 4.082125 GGATTGAGTGGGATTTTGACTGT 58.918 43.478 0.00 0.00 0.00 3.55
2819 3364 5.253330 GGATTGAGTGGGATTTTGACTGTA 58.747 41.667 0.00 0.00 0.00 2.74
2820 3365 5.888161 GGATTGAGTGGGATTTTGACTGTAT 59.112 40.000 0.00 0.00 0.00 2.29
2821 3366 6.183360 GGATTGAGTGGGATTTTGACTGTATG 60.183 42.308 0.00 0.00 0.00 2.39
2822 3367 4.588899 TGAGTGGGATTTTGACTGTATGG 58.411 43.478 0.00 0.00 0.00 2.74
2823 3368 3.947834 GAGTGGGATTTTGACTGTATGGG 59.052 47.826 0.00 0.00 0.00 4.00
2824 3369 3.591527 AGTGGGATTTTGACTGTATGGGA 59.408 43.478 0.00 0.00 0.00 4.37
2825 3370 4.230502 AGTGGGATTTTGACTGTATGGGAT 59.769 41.667 0.00 0.00 0.00 3.85
2826 3371 4.956075 GTGGGATTTTGACTGTATGGGATT 59.044 41.667 0.00 0.00 0.00 3.01
2827 3372 5.422012 GTGGGATTTTGACTGTATGGGATTT 59.578 40.000 0.00 0.00 0.00 2.17
2828 3373 6.605594 GTGGGATTTTGACTGTATGGGATTTA 59.394 38.462 0.00 0.00 0.00 1.40
2829 3374 7.123547 GTGGGATTTTGACTGTATGGGATTTAA 59.876 37.037 0.00 0.00 0.00 1.52
2830 3375 7.843760 TGGGATTTTGACTGTATGGGATTTAAT 59.156 33.333 0.00 0.00 0.00 1.40
2831 3376 8.360390 GGGATTTTGACTGTATGGGATTTAATC 58.640 37.037 0.00 0.00 0.00 1.75
2845 3390 6.596309 GGATTTAATCCTCCCAATCCATTC 57.404 41.667 16.16 0.00 46.19 2.67
2846 3391 5.481824 GGATTTAATCCTCCCAATCCATTCC 59.518 44.000 16.16 0.00 46.19 3.01
2847 3392 5.480058 TTTAATCCTCCCAATCCATTCCA 57.520 39.130 0.00 0.00 0.00 3.53
2848 3393 5.480058 TTAATCCTCCCAATCCATTCCAA 57.520 39.130 0.00 0.00 0.00 3.53
2849 3394 4.564616 AATCCTCCCAATCCATTCCAAT 57.435 40.909 0.00 0.00 0.00 3.16
2850 3395 3.600448 TCCTCCCAATCCATTCCAATC 57.400 47.619 0.00 0.00 0.00 2.67
2851 3396 2.177669 TCCTCCCAATCCATTCCAATCC 59.822 50.000 0.00 0.00 0.00 3.01
2852 3397 2.601905 CTCCCAATCCATTCCAATCCC 58.398 52.381 0.00 0.00 0.00 3.85
2853 3398 1.220236 TCCCAATCCATTCCAATCCCC 59.780 52.381 0.00 0.00 0.00 4.81
2854 3399 1.221265 CCCAATCCATTCCAATCCCCT 59.779 52.381 0.00 0.00 0.00 4.79
2855 3400 2.360638 CCCAATCCATTCCAATCCCCTT 60.361 50.000 0.00 0.00 0.00 3.95
2856 3401 2.967887 CCAATCCATTCCAATCCCCTTC 59.032 50.000 0.00 0.00 0.00 3.46
2857 3402 3.630570 CCAATCCATTCCAATCCCCTTCA 60.631 47.826 0.00 0.00 0.00 3.02
2858 3403 4.032310 CAATCCATTCCAATCCCCTTCAA 58.968 43.478 0.00 0.00 0.00 2.69
2859 3404 3.843177 TCCATTCCAATCCCCTTCAAA 57.157 42.857 0.00 0.00 0.00 2.69
2860 3405 4.351110 TCCATTCCAATCCCCTTCAAAT 57.649 40.909 0.00 0.00 0.00 2.32
2861 3406 4.289245 TCCATTCCAATCCCCTTCAAATC 58.711 43.478 0.00 0.00 0.00 2.17
2862 3407 3.389002 CCATTCCAATCCCCTTCAAATCC 59.611 47.826 0.00 0.00 0.00 3.01
2863 3408 4.292643 CATTCCAATCCCCTTCAAATCCT 58.707 43.478 0.00 0.00 0.00 3.24
2864 3409 3.386932 TCCAATCCCCTTCAAATCCTG 57.613 47.619 0.00 0.00 0.00 3.86
2865 3410 2.654385 TCCAATCCCCTTCAAATCCTGT 59.346 45.455 0.00 0.00 0.00 4.00
2866 3411 3.077391 TCCAATCCCCTTCAAATCCTGTT 59.923 43.478 0.00 0.00 0.00 3.16
2867 3412 3.196254 CCAATCCCCTTCAAATCCTGTTG 59.804 47.826 0.00 0.00 0.00 3.33
2868 3413 1.923356 TCCCCTTCAAATCCTGTTGC 58.077 50.000 0.00 0.00 0.00 4.17
2869 3414 1.146774 TCCCCTTCAAATCCTGTTGCA 59.853 47.619 0.00 0.00 0.00 4.08
2870 3415 1.969923 CCCCTTCAAATCCTGTTGCAA 59.030 47.619 0.00 0.00 0.00 4.08
2871 3416 2.289010 CCCCTTCAAATCCTGTTGCAAC 60.289 50.000 22.83 22.83 0.00 4.17
2872 3417 2.289010 CCCTTCAAATCCTGTTGCAACC 60.289 50.000 26.14 9.39 0.00 3.77
2873 3418 2.607771 CCTTCAAATCCTGTTGCAACCG 60.608 50.000 26.14 19.76 0.00 4.44
2874 3419 1.974265 TCAAATCCTGTTGCAACCGA 58.026 45.000 26.14 20.68 0.00 4.69
2875 3420 2.302260 TCAAATCCTGTTGCAACCGAA 58.698 42.857 26.14 4.47 0.00 4.30
2876 3421 2.034053 TCAAATCCTGTTGCAACCGAAC 59.966 45.455 26.14 2.46 0.00 3.95
2877 3422 1.686355 AATCCTGTTGCAACCGAACA 58.314 45.000 26.14 7.58 0.00 3.18
2878 3423 1.686355 ATCCTGTTGCAACCGAACAA 58.314 45.000 26.14 6.00 33.01 2.83
2879 3424 1.021202 TCCTGTTGCAACCGAACAAG 58.979 50.000 26.14 15.16 33.01 3.16
2880 3425 0.594796 CCTGTTGCAACCGAACAAGC 60.595 55.000 26.14 0.00 33.01 4.01
2881 3426 0.594796 CTGTTGCAACCGAACAAGCC 60.595 55.000 26.14 0.00 33.01 4.35
2882 3427 1.299850 GTTGCAACCGAACAAGCCC 60.300 57.895 19.15 0.00 0.00 5.19
2883 3428 2.494530 TTGCAACCGAACAAGCCCC 61.495 57.895 0.00 0.00 0.00 5.80
2884 3429 2.909965 GCAACCGAACAAGCCCCA 60.910 61.111 0.00 0.00 0.00 4.96
2885 3430 2.494530 GCAACCGAACAAGCCCCAA 61.495 57.895 0.00 0.00 0.00 4.12
2886 3431 1.659794 CAACCGAACAAGCCCCAAG 59.340 57.895 0.00 0.00 0.00 3.61
2887 3432 1.106944 CAACCGAACAAGCCCCAAGT 61.107 55.000 0.00 0.00 0.00 3.16
2888 3433 1.106944 AACCGAACAAGCCCCAAGTG 61.107 55.000 0.00 0.00 0.00 3.16
2889 3434 2.268076 CCGAACAAGCCCCAAGTGG 61.268 63.158 0.00 0.00 0.00 4.00
2901 3446 1.035139 CCAAGTGGGATTGCCTATGC 58.965 55.000 0.00 0.00 40.01 3.14
2902 3447 1.410648 CCAAGTGGGATTGCCTATGCT 60.411 52.381 0.00 0.00 40.01 3.79
2903 3448 1.679680 CAAGTGGGATTGCCTATGCTG 59.320 52.381 0.00 0.00 38.71 4.41
2904 3449 0.466922 AGTGGGATTGCCTATGCTGC 60.467 55.000 0.00 0.00 38.71 5.25
2905 3450 1.526686 TGGGATTGCCTATGCTGCG 60.527 57.895 0.00 0.00 38.71 5.18
2906 3451 2.641559 GGATTGCCTATGCTGCGC 59.358 61.111 0.00 0.00 38.71 6.09
2907 3452 1.895707 GGATTGCCTATGCTGCGCT 60.896 57.895 9.73 0.00 38.71 5.92
2908 3453 1.450531 GGATTGCCTATGCTGCGCTT 61.451 55.000 9.73 0.00 38.71 4.68
2909 3454 0.383231 GATTGCCTATGCTGCGCTTT 59.617 50.000 9.73 0.00 38.71 3.51
2910 3455 0.383231 ATTGCCTATGCTGCGCTTTC 59.617 50.000 9.73 0.00 38.71 2.62
2911 3456 0.677731 TTGCCTATGCTGCGCTTTCT 60.678 50.000 9.73 0.00 38.71 2.52
2912 3457 0.677731 TGCCTATGCTGCGCTTTCTT 60.678 50.000 9.73 0.00 38.71 2.52
2913 3458 0.028637 GCCTATGCTGCGCTTTCTTC 59.971 55.000 9.73 0.00 33.53 2.87
2914 3459 1.661341 CCTATGCTGCGCTTTCTTCT 58.339 50.000 9.73 0.00 0.00 2.85
2915 3460 2.012673 CCTATGCTGCGCTTTCTTCTT 58.987 47.619 9.73 0.00 0.00 2.52
2916 3461 2.031437 CCTATGCTGCGCTTTCTTCTTC 59.969 50.000 9.73 0.00 0.00 2.87
2917 3462 0.807496 ATGCTGCGCTTTCTTCTTCC 59.193 50.000 9.73 0.00 0.00 3.46
2918 3463 0.250467 TGCTGCGCTTTCTTCTTCCT 60.250 50.000 9.73 0.00 0.00 3.36
2919 3464 0.445829 GCTGCGCTTTCTTCTTCCTC 59.554 55.000 9.73 0.00 0.00 3.71
2920 3465 1.800805 CTGCGCTTTCTTCTTCCTCA 58.199 50.000 9.73 0.00 0.00 3.86
2921 3466 1.462670 CTGCGCTTTCTTCTTCCTCAC 59.537 52.381 9.73 0.00 0.00 3.51
2922 3467 0.799393 GCGCTTTCTTCTTCCTCACC 59.201 55.000 0.00 0.00 0.00 4.02
2923 3468 1.878102 GCGCTTTCTTCTTCCTCACCA 60.878 52.381 0.00 0.00 0.00 4.17
2924 3469 1.801178 CGCTTTCTTCTTCCTCACCAC 59.199 52.381 0.00 0.00 0.00 4.16
2925 3470 2.806745 CGCTTTCTTCTTCCTCACCACA 60.807 50.000 0.00 0.00 0.00 4.17
2926 3471 2.810852 GCTTTCTTCTTCCTCACCACAG 59.189 50.000 0.00 0.00 0.00 3.66
2927 3472 2.550830 TTCTTCTTCCTCACCACAGC 57.449 50.000 0.00 0.00 0.00 4.40
2928 3473 0.687354 TCTTCTTCCTCACCACAGCC 59.313 55.000 0.00 0.00 0.00 4.85
2929 3474 0.671781 CTTCTTCCTCACCACAGCCG 60.672 60.000 0.00 0.00 0.00 5.52
2930 3475 2.731691 TTCTTCCTCACCACAGCCGC 62.732 60.000 0.00 0.00 0.00 6.53
2931 3476 3.241530 TTCCTCACCACAGCCGCT 61.242 61.111 0.00 0.00 0.00 5.52
2932 3477 3.535629 TTCCTCACCACAGCCGCTG 62.536 63.158 19.08 19.08 37.52 5.18
2950 3495 3.503749 CGTCCTCTCACGCTAGCT 58.496 61.111 13.93 0.00 31.96 3.32
2951 3496 1.063327 CGTCCTCTCACGCTAGCTG 59.937 63.158 13.93 10.24 31.96 4.24
2952 3497 1.649390 CGTCCTCTCACGCTAGCTGT 61.649 60.000 13.93 9.71 31.96 4.40
2953 3498 0.179150 GTCCTCTCACGCTAGCTGTG 60.179 60.000 24.48 24.48 38.70 3.66
2954 3499 1.518133 CCTCTCACGCTAGCTGTGC 60.518 63.158 25.18 0.00 37.26 4.57
2955 3500 1.510383 CTCTCACGCTAGCTGTGCT 59.490 57.895 25.18 0.00 43.41 4.40
2956 3501 0.801451 CTCTCACGCTAGCTGTGCTG 60.801 60.000 25.18 20.77 40.10 4.41
2957 3502 1.080230 CTCACGCTAGCTGTGCTGT 60.080 57.895 25.18 9.28 40.10 4.40
2958 3503 1.075425 CTCACGCTAGCTGTGCTGTC 61.075 60.000 25.18 0.00 40.10 3.51
2959 3504 2.097038 CACGCTAGCTGTGCTGTCC 61.097 63.158 20.95 0.00 40.10 4.02
2960 3505 2.510238 CGCTAGCTGTGCTGTCCC 60.510 66.667 13.93 0.00 40.10 4.46
2961 3506 2.124942 GCTAGCTGTGCTGTCCCC 60.125 66.667 7.70 0.00 40.10 4.81
2962 3507 2.959484 GCTAGCTGTGCTGTCCCCA 61.959 63.158 7.70 0.00 40.10 4.96
2963 3508 1.910722 CTAGCTGTGCTGTCCCCAT 59.089 57.895 0.00 0.00 40.10 4.00
2964 3509 0.254178 CTAGCTGTGCTGTCCCCATT 59.746 55.000 0.00 0.00 40.10 3.16
2965 3510 0.698238 TAGCTGTGCTGTCCCCATTT 59.302 50.000 0.00 0.00 40.10 2.32
2966 3511 0.610232 AGCTGTGCTGTCCCCATTTC 60.610 55.000 0.00 0.00 37.57 2.17
2967 3512 0.610232 GCTGTGCTGTCCCCATTTCT 60.610 55.000 0.00 0.00 0.00 2.52
2968 3513 1.171308 CTGTGCTGTCCCCATTTCTG 58.829 55.000 0.00 0.00 0.00 3.02
2969 3514 0.251297 TGTGCTGTCCCCATTTCTGG 60.251 55.000 0.00 0.00 42.73 3.86
2970 3515 0.251341 GTGCTGTCCCCATTTCTGGT 60.251 55.000 0.00 0.00 41.37 4.00
2971 3516 0.251297 TGCTGTCCCCATTTCTGGTG 60.251 55.000 0.00 0.00 41.37 4.17
2972 3517 0.038166 GCTGTCCCCATTTCTGGTGA 59.962 55.000 0.00 0.00 41.37 4.02
2973 3518 1.952367 GCTGTCCCCATTTCTGGTGAG 60.952 57.143 0.00 0.00 41.37 3.51
2974 3519 0.698238 TGTCCCCATTTCTGGTGAGG 59.302 55.000 0.00 0.00 41.37 3.86
2975 3520 0.698818 GTCCCCATTTCTGGTGAGGT 59.301 55.000 0.00 0.00 41.37 3.85
2976 3521 0.991920 TCCCCATTTCTGGTGAGGTC 59.008 55.000 0.00 0.00 41.37 3.85
2977 3522 0.698238 CCCCATTTCTGGTGAGGTCA 59.302 55.000 0.00 0.00 41.37 4.02
2978 3523 1.285962 CCCCATTTCTGGTGAGGTCAT 59.714 52.381 0.00 0.00 41.37 3.06
2979 3524 2.372264 CCCATTTCTGGTGAGGTCATG 58.628 52.381 0.00 0.00 41.37 3.07
2980 3525 2.372264 CCATTTCTGGTGAGGTCATGG 58.628 52.381 0.00 0.00 37.79 3.66
2981 3526 1.747355 CATTTCTGGTGAGGTCATGGC 59.253 52.381 0.00 0.00 0.00 4.40
2982 3527 0.321564 TTTCTGGTGAGGTCATGGCG 60.322 55.000 0.00 0.00 0.00 5.69
2983 3528 1.191489 TTCTGGTGAGGTCATGGCGA 61.191 55.000 0.00 0.00 0.00 5.54
2984 3529 1.191489 TCTGGTGAGGTCATGGCGAA 61.191 55.000 0.00 0.00 0.00 4.70
2985 3530 1.003839 TGGTGAGGTCATGGCGAAC 60.004 57.895 0.00 0.00 0.00 3.95
2986 3531 1.745489 GGTGAGGTCATGGCGAACC 60.745 63.158 0.00 0.00 27.93 3.62
2987 3532 1.745489 GTGAGGTCATGGCGAACCC 60.745 63.158 0.00 0.00 33.59 4.11
2988 3533 1.918293 TGAGGTCATGGCGAACCCT 60.918 57.895 0.00 0.00 33.59 4.34
2989 3534 1.299976 GAGGTCATGGCGAACCCTT 59.700 57.895 0.00 0.00 33.59 3.95
2990 3535 1.002134 AGGTCATGGCGAACCCTTG 60.002 57.895 0.00 0.00 39.50 3.61
2991 3536 2.700773 GGTCATGGCGAACCCTTGC 61.701 63.158 0.00 0.00 38.36 4.01
2992 3537 1.675641 GTCATGGCGAACCCTTGCT 60.676 57.895 0.00 0.00 38.36 3.91
2993 3538 1.675310 TCATGGCGAACCCTTGCTG 60.675 57.895 0.00 0.00 38.36 4.41
2994 3539 2.361610 ATGGCGAACCCTTGCTGG 60.362 61.111 0.00 0.00 33.59 4.85
2995 3540 3.210012 ATGGCGAACCCTTGCTGGT 62.210 57.895 0.00 0.00 41.55 4.00
2996 3541 3.365265 GGCGAACCCTTGCTGGTG 61.365 66.667 0.00 0.00 39.05 4.17
2997 3542 3.365265 GCGAACCCTTGCTGGTGG 61.365 66.667 0.00 0.00 39.05 4.61
3002 3547 3.902112 CCCTTGCTGGTGGGTGGT 61.902 66.667 0.00 0.00 38.65 4.16
3003 3548 2.598394 CCTTGCTGGTGGGTGGTG 60.598 66.667 0.00 0.00 0.00 4.17
3004 3549 2.598394 CTTGCTGGTGGGTGGTGG 60.598 66.667 0.00 0.00 0.00 4.61
3005 3550 4.912395 TTGCTGGTGGGTGGTGGC 62.912 66.667 0.00 0.00 0.00 5.01
3022 3567 3.826754 CGCCGCAGCCTGTCTCTA 61.827 66.667 0.00 0.00 34.57 2.43
3023 3568 2.579201 GCCGCAGCCTGTCTCTAA 59.421 61.111 0.00 0.00 0.00 2.10
3024 3569 1.079127 GCCGCAGCCTGTCTCTAAA 60.079 57.895 0.00 0.00 0.00 1.85
3025 3570 0.673644 GCCGCAGCCTGTCTCTAAAA 60.674 55.000 0.00 0.00 0.00 1.52
3026 3571 1.808411 CCGCAGCCTGTCTCTAAAAA 58.192 50.000 0.00 0.00 0.00 1.94
3027 3572 1.464997 CCGCAGCCTGTCTCTAAAAAC 59.535 52.381 0.00 0.00 0.00 2.43
3028 3573 2.417719 CGCAGCCTGTCTCTAAAAACT 58.582 47.619 0.00 0.00 0.00 2.66
3029 3574 2.158449 CGCAGCCTGTCTCTAAAAACTG 59.842 50.000 0.00 0.00 0.00 3.16
3030 3575 3.142174 GCAGCCTGTCTCTAAAAACTGT 58.858 45.455 0.00 0.00 0.00 3.55
3031 3576 4.315803 GCAGCCTGTCTCTAAAAACTGTA 58.684 43.478 0.00 0.00 0.00 2.74
3032 3577 4.390297 GCAGCCTGTCTCTAAAAACTGTAG 59.610 45.833 0.00 0.00 0.00 2.74
3033 3578 4.932200 CAGCCTGTCTCTAAAAACTGTAGG 59.068 45.833 0.00 0.00 0.00 3.18
3034 3579 4.838986 AGCCTGTCTCTAAAAACTGTAGGA 59.161 41.667 0.00 0.00 0.00 2.94
3035 3580 5.307196 AGCCTGTCTCTAAAAACTGTAGGAA 59.693 40.000 0.00 0.00 0.00 3.36
3036 3581 5.995897 GCCTGTCTCTAAAAACTGTAGGAAA 59.004 40.000 0.00 0.00 0.00 3.13
3037 3582 6.485648 GCCTGTCTCTAAAAACTGTAGGAAAA 59.514 38.462 0.00 0.00 0.00 2.29
3038 3583 7.012989 GCCTGTCTCTAAAAACTGTAGGAAAAA 59.987 37.037 0.00 0.00 0.00 1.94
3039 3584 9.067986 CCTGTCTCTAAAAACTGTAGGAAAAAT 57.932 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.179073 CCAGCCAGATCACGGGTAAG 60.179 60.000 5.66 0.00 33.97 2.34
32 33 4.020928 ACAACAGAACGGTGGTGTATGATA 60.021 41.667 3.78 0.00 46.79 2.15
97 98 2.469826 CGCATAACGGCAATGTCTCTA 58.530 47.619 0.00 0.00 38.44 2.43
127 128 6.923928 TGCTGATGATCATTTATCGTTCAA 57.076 33.333 10.14 0.00 37.42 2.69
141 142 4.022589 CGGGAATATTTGCTTGCTGATGAT 60.023 41.667 0.00 0.00 0.00 2.45
152 153 4.789802 GCAGAACTAAGCGGGAATATTTGC 60.790 45.833 0.00 0.00 0.00 3.68
163 165 4.153986 CAACAATCTTGCAGAACTAAGCG 58.846 43.478 0.00 0.00 0.00 4.68
171 173 0.250684 TCGGCCAACAATCTTGCAGA 60.251 50.000 2.24 0.00 0.00 4.26
173 175 1.742831 GTATCGGCCAACAATCTTGCA 59.257 47.619 2.24 0.00 0.00 4.08
174 176 1.065551 GGTATCGGCCAACAATCTTGC 59.934 52.381 2.24 0.00 0.00 4.01
175 177 2.643551 AGGTATCGGCCAACAATCTTG 58.356 47.619 2.24 0.00 0.00 3.02
176 178 3.366052 AAGGTATCGGCCAACAATCTT 57.634 42.857 2.24 0.00 0.00 2.40
177 179 3.016736 CAAAGGTATCGGCCAACAATCT 58.983 45.455 2.24 0.00 0.00 2.40
178 180 2.752903 ACAAAGGTATCGGCCAACAATC 59.247 45.455 2.24 0.00 0.00 2.67
179 181 2.802719 ACAAAGGTATCGGCCAACAAT 58.197 42.857 2.24 0.00 0.00 2.71
180 182 2.279935 ACAAAGGTATCGGCCAACAA 57.720 45.000 2.24 0.00 0.00 2.83
181 183 2.279935 AACAAAGGTATCGGCCAACA 57.720 45.000 2.24 0.00 0.00 3.33
182 184 3.075884 TGTAACAAAGGTATCGGCCAAC 58.924 45.455 2.24 0.00 0.00 3.77
183 185 3.420300 TGTAACAAAGGTATCGGCCAA 57.580 42.857 2.24 0.00 0.00 4.52
184 186 3.420300 TTGTAACAAAGGTATCGGCCA 57.580 42.857 2.24 0.00 0.00 5.36
185 187 3.425227 CGTTTGTAACAAAGGTATCGGCC 60.425 47.826 0.00 0.00 0.00 6.13
186 188 3.739494 CGTTTGTAACAAAGGTATCGGC 58.261 45.455 0.00 0.00 0.00 5.54
187 189 3.186817 TGCGTTTGTAACAAAGGTATCGG 59.813 43.478 0.00 0.00 0.00 4.18
188 190 4.392619 TGCGTTTGTAACAAAGGTATCG 57.607 40.909 0.00 0.00 0.00 2.92
189 191 5.933790 TCATGCGTTTGTAACAAAGGTATC 58.066 37.500 0.00 0.00 0.00 2.24
190 192 5.472137 ACTCATGCGTTTGTAACAAAGGTAT 59.528 36.000 0.00 0.00 0.00 2.73
191 193 4.817464 ACTCATGCGTTTGTAACAAAGGTA 59.183 37.500 0.00 0.00 0.00 3.08
192 194 3.630312 ACTCATGCGTTTGTAACAAAGGT 59.370 39.130 0.00 0.00 0.00 3.50
193 195 4.024048 AGACTCATGCGTTTGTAACAAAGG 60.024 41.667 0.00 0.00 0.00 3.11
194 196 5.095691 AGACTCATGCGTTTGTAACAAAG 57.904 39.130 0.00 0.00 0.00 2.77
195 197 4.318475 CGAGACTCATGCGTTTGTAACAAA 60.318 41.667 2.82 0.00 0.00 2.83
196 198 3.183574 CGAGACTCATGCGTTTGTAACAA 59.816 43.478 2.82 0.00 0.00 2.83
197 199 2.729360 CGAGACTCATGCGTTTGTAACA 59.271 45.455 2.82 0.00 0.00 2.41
201 203 2.030185 ACTACGAGACTCATGCGTTTGT 60.030 45.455 2.82 0.00 39.24 2.83
202 204 2.596452 ACTACGAGACTCATGCGTTTG 58.404 47.619 2.82 0.00 39.24 2.93
213 215 8.511465 TTCACAGTACAAAATTACTACGAGAC 57.489 34.615 0.00 0.00 30.76 3.36
227 229 7.776618 TCCTCTAGAGATTTTCACAGTACAA 57.223 36.000 21.76 0.00 0.00 2.41
229 231 7.603651 TGTTCCTCTAGAGATTTTCACAGTAC 58.396 38.462 21.76 5.65 0.00 2.73
283 310 2.789409 ACCAATAGGGACAGTGCTTC 57.211 50.000 0.00 0.00 41.15 3.86
292 319 4.961730 AGCATTTGCATAAACCAATAGGGA 59.038 37.500 5.20 0.00 45.16 4.20
318 345 2.263945 GAGCTTCGTCTACAGAAAGGC 58.736 52.381 0.00 0.00 0.00 4.35
324 351 0.888619 TGGTGGAGCTTCGTCTACAG 59.111 55.000 0.00 0.00 29.74 2.74
328 355 1.668294 CAGTGGTGGAGCTTCGTCT 59.332 57.895 0.00 0.00 0.00 4.18
331 358 2.743928 GGCAGTGGTGGAGCTTCG 60.744 66.667 0.00 0.00 0.00 3.79
332 359 2.360475 GGGCAGTGGTGGAGCTTC 60.360 66.667 0.00 0.00 0.00 3.86
345 372 0.759436 GGAGATTCCTCTACGGGGCA 60.759 60.000 0.00 0.00 39.38 5.36
347 374 1.413077 GTTGGAGATTCCTCTACGGGG 59.587 57.143 0.00 0.00 39.38 5.73
351 378 5.167303 AGGTTTGTTGGAGATTCCTCTAC 57.833 43.478 0.00 0.00 39.38 2.59
352 379 4.225267 GGAGGTTTGTTGGAGATTCCTCTA 59.775 45.833 0.00 0.00 39.61 2.43
356 389 2.820197 GTGGAGGTTTGTTGGAGATTCC 59.180 50.000 0.00 0.00 36.96 3.01
375 408 4.450082 TGCTGTATACTGTGTAGTGGTG 57.550 45.455 10.96 0.00 37.78 4.17
411 444 3.584250 CTGCAGCACGCGTCAAAGG 62.584 63.158 9.86 0.00 46.97 3.11
412 445 1.556591 TACTGCAGCACGCGTCAAAG 61.557 55.000 15.27 5.55 46.97 2.77
422 455 1.340991 GGGAAAGGGAATACTGCAGCA 60.341 52.381 15.27 0.00 0.00 4.41
423 456 1.064389 AGGGAAAGGGAATACTGCAGC 60.064 52.381 15.27 0.00 0.00 5.25
425 458 1.209504 CGAGGGAAAGGGAATACTGCA 59.790 52.381 0.00 0.00 0.00 4.41
427 460 1.209504 TGCGAGGGAAAGGGAATACTG 59.790 52.381 0.00 0.00 0.00 2.74
435 468 1.160137 CTGTTTCTGCGAGGGAAAGG 58.840 55.000 0.00 0.00 34.02 3.11
440 473 4.396166 ACAATATTTCTGTTTCTGCGAGGG 59.604 41.667 0.00 0.00 0.00 4.30
452 485 5.175859 ACGTAGTGGTGGACAATATTTCTG 58.824 41.667 0.00 0.00 42.51 3.02
462 495 2.806608 TGAGAAACGTAGTGGTGGAC 57.193 50.000 0.00 0.00 45.00 4.02
465 498 4.087510 TCGTATGAGAAACGTAGTGGTG 57.912 45.455 0.00 0.00 45.00 4.17
466 499 4.978083 ATCGTATGAGAAACGTAGTGGT 57.022 40.909 0.00 0.00 45.00 4.16
467 500 6.296365 TCTATCGTATGAGAAACGTAGTGG 57.704 41.667 0.00 0.00 45.00 4.00
470 503 7.022384 GGGATTCTATCGTATGAGAAACGTAG 58.978 42.308 0.00 0.00 41.08 3.51
473 506 4.852104 CGGGATTCTATCGTATGAGAAACG 59.148 45.833 0.00 0.00 41.64 3.60
476 543 5.048224 GGAACGGGATTCTATCGTATGAGAA 60.048 44.000 0.00 0.00 37.48 2.87
479 546 4.404640 AGGAACGGGATTCTATCGTATGA 58.595 43.478 0.00 0.00 37.48 2.15
484 551 5.116882 AGAAAAAGGAACGGGATTCTATCG 58.883 41.667 0.00 0.00 37.48 2.92
489 556 5.220605 CGTATGAGAAAAAGGAACGGGATTC 60.221 44.000 0.00 0.00 36.48 2.52
495 562 8.354011 AGATTATCGTATGAGAAAAAGGAACG 57.646 34.615 0.00 0.00 0.00 3.95
512 579 7.327275 CGAGAAAAGGAGGATTGTAGATTATCG 59.673 40.741 0.00 0.00 0.00 2.92
537 604 7.573627 TCATTCATTATAGTGTCTCTCGTACG 58.426 38.462 9.53 9.53 0.00 3.67
545 612 9.950496 GGGATGTATTCATTCATTATAGTGTCT 57.050 33.333 0.00 0.00 34.06 3.41
546 613 9.167311 GGGGATGTATTCATTCATTATAGTGTC 57.833 37.037 0.00 0.00 34.06 3.67
547 614 8.894592 AGGGGATGTATTCATTCATTATAGTGT 58.105 33.333 0.00 0.00 34.06 3.55
623 690 7.562454 TTCTATTCTTTATTTAAGCCACGGG 57.438 36.000 0.00 0.00 33.66 5.28
655 722 2.076863 GCCGTGTCTTTGCATAACTCT 58.923 47.619 0.00 0.00 0.00 3.24
703 770 6.985653 TGGAAGAAAAATATGTTGGTTGGA 57.014 33.333 0.00 0.00 0.00 3.53
704 771 7.614494 AGATGGAAGAAAAATATGTTGGTTGG 58.386 34.615 0.00 0.00 0.00 3.77
1354 1857 0.947286 AAGGTAGGGTAGGGTAGGGG 59.053 60.000 0.00 0.00 0.00 4.79
1355 1858 2.038534 GCAAGGTAGGGTAGGGTAGGG 61.039 61.905 0.00 0.00 0.00 3.53
1356 1859 1.343681 TGCAAGGTAGGGTAGGGTAGG 60.344 57.143 0.00 0.00 0.00 3.18
1357 1860 2.170012 TGCAAGGTAGGGTAGGGTAG 57.830 55.000 0.00 0.00 0.00 3.18
1358 1861 2.686119 GATGCAAGGTAGGGTAGGGTA 58.314 52.381 0.00 0.00 0.00 3.69
1359 1862 1.508256 GATGCAAGGTAGGGTAGGGT 58.492 55.000 0.00 0.00 0.00 4.34
1400 1913 4.148825 ACCACGGCAGATCGGAGC 62.149 66.667 0.00 0.00 0.00 4.70
1401 1914 2.105128 GACCACGGCAGATCGGAG 59.895 66.667 0.00 0.00 0.00 4.63
1402 1915 3.822192 CGACCACGGCAGATCGGA 61.822 66.667 0.00 0.00 35.72 4.55
1403 1916 4.129737 ACGACCACGGCAGATCGG 62.130 66.667 12.38 0.00 44.46 4.18
1525 2042 0.730840 ATCACGCGTCTATCACACGA 59.269 50.000 9.86 0.00 39.75 4.35
1526 2043 1.545759 AATCACGCGTCTATCACACG 58.454 50.000 9.86 0.00 40.35 4.49
1527 2044 3.179830 AGAAATCACGCGTCTATCACAC 58.820 45.455 9.86 0.00 0.00 3.82
1680 2198 2.292267 CAATTGGAGGAACTGGATCGG 58.708 52.381 0.00 0.00 41.55 4.18
1714 2232 1.064134 GCGCAAATCCCCGATTCAC 59.936 57.895 0.30 0.00 30.29 3.18
1778 2296 5.926663 AGCTTCATCAATAGCTGAGAATCA 58.073 37.500 0.00 0.00 45.55 2.57
1822 2340 5.006746 GGACTTGTGTATGAAATCGACATCC 59.993 44.000 0.00 0.00 0.00 3.51
1823 2341 5.580691 TGGACTTGTGTATGAAATCGACATC 59.419 40.000 0.00 0.00 0.00 3.06
1825 2343 4.888917 TGGACTTGTGTATGAAATCGACA 58.111 39.130 0.00 0.00 0.00 4.35
1826 2344 5.727791 GCATGGACTTGTGTATGAAATCGAC 60.728 44.000 0.00 0.00 0.00 4.20
1830 2348 6.594788 AAAGCATGGACTTGTGTATGAAAT 57.405 33.333 0.00 0.00 0.00 2.17
1833 2351 6.048732 TCTAAAGCATGGACTTGTGTATGA 57.951 37.500 0.00 0.00 0.00 2.15
1843 2361 4.397417 AGTTGAGCATTCTAAAGCATGGAC 59.603 41.667 0.00 0.00 0.00 4.02
1888 2407 3.448093 TGAACATGGCATAAGGAACCA 57.552 42.857 0.00 0.00 37.99 3.67
1942 2461 4.832492 AGTATCAACCATACTCCCAGGAT 58.168 43.478 0.00 0.00 43.91 3.24
1997 2516 6.829811 TGGCAGATTCATTCATCATCAAACTA 59.170 34.615 0.00 0.00 0.00 2.24
2090 2609 4.400251 CAGTGGTCATAACAATCCATTGCT 59.600 41.667 0.00 0.00 41.38 3.91
2109 2628 0.249322 ACCGACCAAACGAGACAGTG 60.249 55.000 0.00 0.00 35.09 3.66
2318 2845 2.383298 ACAAAAGTGCATCGACAACG 57.617 45.000 0.00 0.00 41.26 4.10
2436 2966 5.106515 GGAAAGTACTTCTCACCATTGCTTC 60.107 44.000 8.95 0.00 34.17 3.86
2475 3018 8.479689 TGACATAATTTCAGCATCAATTCCATT 58.520 29.630 0.00 0.00 0.00 3.16
2568 3112 0.598065 GCTGCCACCAGGTTTAAGTG 59.402 55.000 0.00 0.00 39.54 3.16
2576 3120 3.130633 GTTTTAAAAAGCTGCCACCAGG 58.869 45.455 1.31 0.00 39.54 4.45
2577 3121 2.794350 CGTTTTAAAAAGCTGCCACCAG 59.206 45.455 1.31 0.00 42.13 4.00
2579 3123 3.049912 CTCGTTTTAAAAAGCTGCCACC 58.950 45.455 8.77 0.00 0.00 4.61
2580 3124 2.471370 GCTCGTTTTAAAAAGCTGCCAC 59.529 45.455 14.62 0.00 0.00 5.01
2581 3125 2.360801 AGCTCGTTTTAAAAAGCTGCCA 59.639 40.909 21.00 0.55 43.21 4.92
2582 3126 3.013276 AGCTCGTTTTAAAAAGCTGCC 57.987 42.857 21.00 1.13 43.21 4.85
2583 3127 5.457473 TGTTAAGCTCGTTTTAAAAAGCTGC 59.543 36.000 21.93 19.22 44.03 5.25
2584 3128 7.623268 ATGTTAAGCTCGTTTTAAAAAGCTG 57.377 32.000 21.93 12.57 44.03 4.24
2585 3129 8.135529 AGAATGTTAAGCTCGTTTTAAAAAGCT 58.864 29.630 17.58 17.58 46.66 3.74
2618 3162 4.212847 GCTATGATGCAGTTACAGTGATGG 59.787 45.833 0.00 0.00 0.00 3.51
2620 3164 5.287674 AGCTATGATGCAGTTACAGTGAT 57.712 39.130 0.00 0.00 34.99 3.06
2656 3200 9.109393 ACTAAAATACCACTATGTTGCTACATG 57.891 33.333 21.78 14.27 44.56 3.21
2659 3203 9.769093 CAAACTAAAATACCACTATGTTGCTAC 57.231 33.333 0.00 0.00 0.00 3.58
2660 3204 9.509956 ACAAACTAAAATACCACTATGTTGCTA 57.490 29.630 0.00 0.00 0.00 3.49
2661 3205 8.296713 CACAAACTAAAATACCACTATGTTGCT 58.703 33.333 0.00 0.00 0.00 3.91
2662 3206 7.061789 GCACAAACTAAAATACCACTATGTTGC 59.938 37.037 0.00 0.00 0.00 4.17
2663 3207 8.079203 TGCACAAACTAAAATACCACTATGTTG 58.921 33.333 0.00 0.00 0.00 3.33
2664 3208 8.172352 TGCACAAACTAAAATACCACTATGTT 57.828 30.769 0.00 0.00 0.00 2.71
2665 3209 7.753309 TGCACAAACTAAAATACCACTATGT 57.247 32.000 0.00 0.00 0.00 2.29
2666 3210 9.638239 AAATGCACAAACTAAAATACCACTATG 57.362 29.630 0.00 0.00 0.00 2.23
2669 3213 9.471084 GTTAAATGCACAAACTAAAATACCACT 57.529 29.630 0.00 0.00 0.00 4.00
2670 3214 9.471084 AGTTAAATGCACAAACTAAAATACCAC 57.529 29.630 8.07 0.00 31.84 4.16
2671 3215 9.469807 CAGTTAAATGCACAAACTAAAATACCA 57.530 29.630 9.19 0.00 32.35 3.25
2672 3216 8.921670 CCAGTTAAATGCACAAACTAAAATACC 58.078 33.333 9.19 0.00 32.35 2.73
2673 3217 9.685828 TCCAGTTAAATGCACAAACTAAAATAC 57.314 29.630 9.19 0.00 32.35 1.89
2675 3219 9.777297 ATTCCAGTTAAATGCACAAACTAAAAT 57.223 25.926 9.19 9.07 32.35 1.82
2676 3220 9.255304 GATTCCAGTTAAATGCACAAACTAAAA 57.745 29.630 9.19 7.62 32.35 1.52
2677 3221 8.417106 TGATTCCAGTTAAATGCACAAACTAAA 58.583 29.630 9.19 7.89 32.35 1.85
2678 3222 7.946207 TGATTCCAGTTAAATGCACAAACTAA 58.054 30.769 9.19 3.61 32.35 2.24
2679 3223 7.517614 TGATTCCAGTTAAATGCACAAACTA 57.482 32.000 9.19 0.00 32.35 2.24
2683 3227 4.280425 TGCTGATTCCAGTTAAATGCACAA 59.720 37.500 0.00 0.00 42.35 3.33
2687 3231 3.429085 CGTGCTGATTCCAGTTAAATGC 58.571 45.455 0.00 0.00 42.35 3.56
2689 3233 2.423538 GGCGTGCTGATTCCAGTTAAAT 59.576 45.455 0.00 0.00 42.35 1.40
2705 3249 2.742372 CAAGGGAACTCCGGCGTG 60.742 66.667 6.01 0.14 42.68 5.34
2714 3258 4.804806 TGGTTACGCCAAGGGAAC 57.195 55.556 0.00 0.00 45.94 3.62
2747 3292 2.094752 ACATTTATGCGCTCCAAACACC 60.095 45.455 9.73 0.00 0.00 4.16
2748 3293 3.216147 ACATTTATGCGCTCCAAACAC 57.784 42.857 9.73 0.00 0.00 3.32
2755 3300 4.875544 TTCCTACAACATTTATGCGCTC 57.124 40.909 9.73 0.00 0.00 5.03
2758 3303 6.321717 ACACAATTCCTACAACATTTATGCG 58.678 36.000 0.00 0.00 0.00 4.73
2762 3307 7.094118 GGCCTTACACAATTCCTACAACATTTA 60.094 37.037 0.00 0.00 0.00 1.40
2763 3308 6.295067 GGCCTTACACAATTCCTACAACATTT 60.295 38.462 0.00 0.00 0.00 2.32
2764 3309 5.185056 GGCCTTACACAATTCCTACAACATT 59.815 40.000 0.00 0.00 0.00 2.71
2765 3310 4.705023 GGCCTTACACAATTCCTACAACAT 59.295 41.667 0.00 0.00 0.00 2.71
2766 3311 4.076394 GGCCTTACACAATTCCTACAACA 58.924 43.478 0.00 0.00 0.00 3.33
2767 3312 3.442625 GGGCCTTACACAATTCCTACAAC 59.557 47.826 0.84 0.00 0.00 3.32
2768 3313 3.332485 AGGGCCTTACACAATTCCTACAA 59.668 43.478 0.00 0.00 0.00 2.41
2769 3314 2.916934 AGGGCCTTACACAATTCCTACA 59.083 45.455 0.00 0.00 0.00 2.74
2770 3315 3.279434 CAGGGCCTTACACAATTCCTAC 58.721 50.000 1.32 0.00 0.00 3.18
2771 3316 2.241176 CCAGGGCCTTACACAATTCCTA 59.759 50.000 1.32 0.00 0.00 2.94
2772 3317 1.005924 CCAGGGCCTTACACAATTCCT 59.994 52.381 1.32 0.00 0.00 3.36
2773 3318 1.005450 TCCAGGGCCTTACACAATTCC 59.995 52.381 1.32 0.00 0.00 3.01
2774 3319 2.369394 CTCCAGGGCCTTACACAATTC 58.631 52.381 1.32 0.00 0.00 2.17
2775 3320 1.005924 CCTCCAGGGCCTTACACAATT 59.994 52.381 1.32 0.00 0.00 2.32
2776 3321 0.625849 CCTCCAGGGCCTTACACAAT 59.374 55.000 1.32 0.00 0.00 2.71
2777 3322 2.074967 CCTCCAGGGCCTTACACAA 58.925 57.895 1.32 0.00 0.00 3.33
2778 3323 3.820425 CCTCCAGGGCCTTACACA 58.180 61.111 1.32 0.00 0.00 3.72
2788 3333 1.639635 CCCACTCAATCCCCTCCAGG 61.640 65.000 0.00 0.00 0.00 4.45
2789 3334 0.621571 TCCCACTCAATCCCCTCCAG 60.622 60.000 0.00 0.00 0.00 3.86
2790 3335 0.046242 ATCCCACTCAATCCCCTCCA 59.954 55.000 0.00 0.00 0.00 3.86
2791 3336 1.226311 AATCCCACTCAATCCCCTCC 58.774 55.000 0.00 0.00 0.00 4.30
2792 3337 3.026694 CAAAATCCCACTCAATCCCCTC 58.973 50.000 0.00 0.00 0.00 4.30
2793 3338 2.654385 TCAAAATCCCACTCAATCCCCT 59.346 45.455 0.00 0.00 0.00 4.79
2794 3339 2.760650 GTCAAAATCCCACTCAATCCCC 59.239 50.000 0.00 0.00 0.00 4.81
2795 3340 3.445096 CAGTCAAAATCCCACTCAATCCC 59.555 47.826 0.00 0.00 0.00 3.85
2796 3341 4.082125 ACAGTCAAAATCCCACTCAATCC 58.918 43.478 0.00 0.00 0.00 3.01
2797 3342 6.183360 CCATACAGTCAAAATCCCACTCAATC 60.183 42.308 0.00 0.00 0.00 2.67
2798 3343 5.653769 CCATACAGTCAAAATCCCACTCAAT 59.346 40.000 0.00 0.00 0.00 2.57
2799 3344 5.009631 CCATACAGTCAAAATCCCACTCAA 58.990 41.667 0.00 0.00 0.00 3.02
2800 3345 4.567537 CCCATACAGTCAAAATCCCACTCA 60.568 45.833 0.00 0.00 0.00 3.41
2801 3346 3.947834 CCCATACAGTCAAAATCCCACTC 59.052 47.826 0.00 0.00 0.00 3.51
2802 3347 3.591527 TCCCATACAGTCAAAATCCCACT 59.408 43.478 0.00 0.00 0.00 4.00
2803 3348 3.963129 TCCCATACAGTCAAAATCCCAC 58.037 45.455 0.00 0.00 0.00 4.61
2804 3349 4.879295 ATCCCATACAGTCAAAATCCCA 57.121 40.909 0.00 0.00 0.00 4.37
2805 3350 7.654022 TTAAATCCCATACAGTCAAAATCCC 57.346 36.000 0.00 0.00 0.00 3.85
2806 3351 8.360390 GGATTAAATCCCATACAGTCAAAATCC 58.640 37.037 0.00 0.00 43.88 3.01
2823 3368 6.077322 TGGAATGGATTGGGAGGATTAAATC 58.923 40.000 0.00 0.00 0.00 2.17
2824 3369 6.041910 TGGAATGGATTGGGAGGATTAAAT 57.958 37.500 0.00 0.00 0.00 1.40
2825 3370 5.480058 TGGAATGGATTGGGAGGATTAAA 57.520 39.130 0.00 0.00 0.00 1.52
2826 3371 5.480058 TTGGAATGGATTGGGAGGATTAA 57.520 39.130 0.00 0.00 0.00 1.40
2827 3372 5.459536 GGATTGGAATGGATTGGGAGGATTA 60.460 44.000 0.00 0.00 0.00 1.75
2828 3373 4.486839 GATTGGAATGGATTGGGAGGATT 58.513 43.478 0.00 0.00 0.00 3.01
2829 3374 3.181414 GGATTGGAATGGATTGGGAGGAT 60.181 47.826 0.00 0.00 0.00 3.24
2830 3375 2.177669 GGATTGGAATGGATTGGGAGGA 59.822 50.000 0.00 0.00 0.00 3.71
2831 3376 2.601905 GGATTGGAATGGATTGGGAGG 58.398 52.381 0.00 0.00 0.00 4.30
2832 3377 2.601905 GGGATTGGAATGGATTGGGAG 58.398 52.381 0.00 0.00 0.00 4.30
2833 3378 1.220236 GGGGATTGGAATGGATTGGGA 59.780 52.381 0.00 0.00 0.00 4.37
2834 3379 1.221265 AGGGGATTGGAATGGATTGGG 59.779 52.381 0.00 0.00 0.00 4.12
2835 3380 2.781403 AGGGGATTGGAATGGATTGG 57.219 50.000 0.00 0.00 0.00 3.16
2836 3381 3.645434 TGAAGGGGATTGGAATGGATTG 58.355 45.455 0.00 0.00 0.00 2.67
2837 3382 4.351110 TTGAAGGGGATTGGAATGGATT 57.649 40.909 0.00 0.00 0.00 3.01
2838 3383 4.351110 TTTGAAGGGGATTGGAATGGAT 57.649 40.909 0.00 0.00 0.00 3.41
2839 3384 3.843177 TTTGAAGGGGATTGGAATGGA 57.157 42.857 0.00 0.00 0.00 3.41
2840 3385 3.389002 GGATTTGAAGGGGATTGGAATGG 59.611 47.826 0.00 0.00 0.00 3.16
2841 3386 4.100498 CAGGATTTGAAGGGGATTGGAATG 59.900 45.833 0.00 0.00 0.00 2.67
2842 3387 4.264986 ACAGGATTTGAAGGGGATTGGAAT 60.265 41.667 0.00 0.00 0.00 3.01
2843 3388 3.077391 ACAGGATTTGAAGGGGATTGGAA 59.923 43.478 0.00 0.00 0.00 3.53
2844 3389 2.654385 ACAGGATTTGAAGGGGATTGGA 59.346 45.455 0.00 0.00 0.00 3.53
2845 3390 3.105959 ACAGGATTTGAAGGGGATTGG 57.894 47.619 0.00 0.00 0.00 3.16
2846 3391 3.368739 GCAACAGGATTTGAAGGGGATTG 60.369 47.826 0.00 0.00 0.00 2.67
2847 3392 2.833943 GCAACAGGATTTGAAGGGGATT 59.166 45.455 0.00 0.00 0.00 3.01
2848 3393 2.225343 TGCAACAGGATTTGAAGGGGAT 60.225 45.455 0.00 0.00 0.00 3.85
2849 3394 1.146774 TGCAACAGGATTTGAAGGGGA 59.853 47.619 0.00 0.00 0.00 4.81
2850 3395 1.631405 TGCAACAGGATTTGAAGGGG 58.369 50.000 0.00 0.00 0.00 4.79
2851 3396 2.289010 GGTTGCAACAGGATTTGAAGGG 60.289 50.000 29.55 0.00 0.00 3.95
2852 3397 2.607771 CGGTTGCAACAGGATTTGAAGG 60.608 50.000 29.55 1.64 0.00 3.46
2853 3398 2.293122 TCGGTTGCAACAGGATTTGAAG 59.707 45.455 29.55 8.29 0.00 3.02
2854 3399 2.302260 TCGGTTGCAACAGGATTTGAA 58.698 42.857 29.55 6.43 0.00 2.69
2855 3400 1.974265 TCGGTTGCAACAGGATTTGA 58.026 45.000 29.55 12.59 0.00 2.69
2856 3401 2.223688 TGTTCGGTTGCAACAGGATTTG 60.224 45.455 29.55 10.64 30.16 2.32
2857 3402 2.028130 TGTTCGGTTGCAACAGGATTT 58.972 42.857 29.55 0.00 30.16 2.17
2858 3403 1.686355 TGTTCGGTTGCAACAGGATT 58.314 45.000 29.55 0.00 30.16 3.01
2859 3404 1.608590 CTTGTTCGGTTGCAACAGGAT 59.391 47.619 29.55 0.00 35.22 3.24
2860 3405 1.021202 CTTGTTCGGTTGCAACAGGA 58.979 50.000 29.55 22.28 35.22 3.86
2861 3406 0.594796 GCTTGTTCGGTTGCAACAGG 60.595 55.000 29.55 20.45 35.22 4.00
2862 3407 0.594796 GGCTTGTTCGGTTGCAACAG 60.595 55.000 29.55 25.71 35.22 3.16
2863 3408 1.435515 GGCTTGTTCGGTTGCAACA 59.564 52.632 29.55 8.78 31.76 3.33
2864 3409 1.299850 GGGCTTGTTCGGTTGCAAC 60.300 57.895 21.59 21.59 0.00 4.17
2865 3410 2.494530 GGGGCTTGTTCGGTTGCAA 61.495 57.895 0.00 0.00 0.00 4.08
2866 3411 2.909965 GGGGCTTGTTCGGTTGCA 60.910 61.111 0.00 0.00 0.00 4.08
2867 3412 2.420466 CTTGGGGCTTGTTCGGTTGC 62.420 60.000 0.00 0.00 0.00 4.17
2868 3413 1.106944 ACTTGGGGCTTGTTCGGTTG 61.107 55.000 0.00 0.00 0.00 3.77
2869 3414 1.106944 CACTTGGGGCTTGTTCGGTT 61.107 55.000 0.00 0.00 0.00 4.44
2870 3415 1.528309 CACTTGGGGCTTGTTCGGT 60.528 57.895 0.00 0.00 0.00 4.69
2871 3416 2.268076 CCACTTGGGGCTTGTTCGG 61.268 63.158 0.00 0.00 0.00 4.30
2872 3417 3.354678 CCACTTGGGGCTTGTTCG 58.645 61.111 0.00 0.00 0.00 3.95
2882 3427 1.035139 GCATAGGCAATCCCACTTGG 58.965 55.000 0.00 0.00 40.72 3.61
2883 3428 1.679680 CAGCATAGGCAATCCCACTTG 59.320 52.381 0.67 0.00 44.61 3.16
2884 3429 2.025863 GCAGCATAGGCAATCCCACTT 61.026 52.381 0.67 0.00 44.61 3.16
2885 3430 0.466922 GCAGCATAGGCAATCCCACT 60.467 55.000 0.67 0.00 44.61 4.00
2886 3431 1.789078 CGCAGCATAGGCAATCCCAC 61.789 60.000 0.67 0.00 44.61 4.61
2887 3432 1.526686 CGCAGCATAGGCAATCCCA 60.527 57.895 0.67 0.00 44.61 4.37
2888 3433 3.348236 CGCAGCATAGGCAATCCC 58.652 61.111 0.67 0.00 44.61 3.85
2901 3446 1.462670 GTGAGGAAGAAGAAAGCGCAG 59.537 52.381 11.47 0.00 0.00 5.18
2902 3447 1.512926 GTGAGGAAGAAGAAAGCGCA 58.487 50.000 11.47 0.00 0.00 6.09
2903 3448 0.799393 GGTGAGGAAGAAGAAAGCGC 59.201 55.000 0.00 0.00 0.00 5.92
2904 3449 1.801178 GTGGTGAGGAAGAAGAAAGCG 59.199 52.381 0.00 0.00 0.00 4.68
2905 3450 2.810852 CTGTGGTGAGGAAGAAGAAAGC 59.189 50.000 0.00 0.00 0.00 3.51
2906 3451 2.810852 GCTGTGGTGAGGAAGAAGAAAG 59.189 50.000 0.00 0.00 0.00 2.62
2907 3452 2.487265 GGCTGTGGTGAGGAAGAAGAAA 60.487 50.000 0.00 0.00 0.00 2.52
2908 3453 1.072331 GGCTGTGGTGAGGAAGAAGAA 59.928 52.381 0.00 0.00 0.00 2.52
2909 3454 0.687354 GGCTGTGGTGAGGAAGAAGA 59.313 55.000 0.00 0.00 0.00 2.87
2910 3455 0.671781 CGGCTGTGGTGAGGAAGAAG 60.672 60.000 0.00 0.00 0.00 2.85
2911 3456 1.371183 CGGCTGTGGTGAGGAAGAA 59.629 57.895 0.00 0.00 0.00 2.52
2912 3457 3.059982 CGGCTGTGGTGAGGAAGA 58.940 61.111 0.00 0.00 0.00 2.87
2913 3458 2.743928 GCGGCTGTGGTGAGGAAG 60.744 66.667 0.00 0.00 0.00 3.46
2914 3459 3.241530 AGCGGCTGTGGTGAGGAA 61.242 61.111 0.00 0.00 0.00 3.36
2915 3460 4.007644 CAGCGGCTGTGGTGAGGA 62.008 66.667 21.60 0.00 39.68 3.71
2933 3478 1.063327 CAGCTAGCGTGAGAGGACG 59.937 63.158 9.55 0.00 42.42 4.79
2934 3479 0.179150 CACAGCTAGCGTGAGAGGAC 60.179 60.000 25.56 0.00 36.43 3.85
2935 3480 1.938657 GCACAGCTAGCGTGAGAGGA 61.939 60.000 30.55 0.00 36.43 3.71
2936 3481 1.518133 GCACAGCTAGCGTGAGAGG 60.518 63.158 30.55 13.56 36.43 3.69
2937 3482 0.801451 CAGCACAGCTAGCGTGAGAG 60.801 60.000 30.55 19.68 36.40 3.20
2938 3483 1.213799 CAGCACAGCTAGCGTGAGA 59.786 57.895 30.55 0.00 36.40 3.27
2939 3484 1.075425 GACAGCACAGCTAGCGTGAG 61.075 60.000 30.55 24.80 36.40 3.51
2940 3485 1.080501 GACAGCACAGCTAGCGTGA 60.081 57.895 30.55 0.00 36.40 4.35
2941 3486 2.097038 GGACAGCACAGCTAGCGTG 61.097 63.158 25.46 25.46 36.40 5.34
2942 3487 2.262915 GGACAGCACAGCTAGCGT 59.737 61.111 9.55 7.74 36.40 5.07
2943 3488 2.510238 GGGACAGCACAGCTAGCG 60.510 66.667 9.55 7.05 36.40 4.26
2944 3489 2.124942 GGGGACAGCACAGCTAGC 60.125 66.667 6.62 6.62 36.40 3.42
2945 3490 3.392228 TGGGGACAGCACAGCTAG 58.608 61.111 0.00 0.00 36.40 3.42
2955 3500 0.698238 CCTCACCAGAAATGGGGACA 59.302 55.000 0.00 0.00 40.55 4.02
2956 3501 0.698818 ACCTCACCAGAAATGGGGAC 59.301 55.000 0.00 0.00 40.55 4.46
2957 3502 0.991920 GACCTCACCAGAAATGGGGA 59.008 55.000 0.00 0.00 40.55 4.81
2958 3503 0.698238 TGACCTCACCAGAAATGGGG 59.302 55.000 0.00 0.00 44.07 4.96
2959 3504 2.372264 CATGACCTCACCAGAAATGGG 58.628 52.381 0.00 0.00 0.00 4.00
2960 3505 2.372264 CCATGACCTCACCAGAAATGG 58.628 52.381 0.00 0.00 0.00 3.16
2961 3506 1.747355 GCCATGACCTCACCAGAAATG 59.253 52.381 0.00 0.00 0.00 2.32
2962 3507 1.679944 CGCCATGACCTCACCAGAAAT 60.680 52.381 0.00 0.00 0.00 2.17
2963 3508 0.321564 CGCCATGACCTCACCAGAAA 60.322 55.000 0.00 0.00 0.00 2.52
2964 3509 1.191489 TCGCCATGACCTCACCAGAA 61.191 55.000 0.00 0.00 0.00 3.02
2965 3510 1.191489 TTCGCCATGACCTCACCAGA 61.191 55.000 0.00 0.00 0.00 3.86
2966 3511 1.021390 GTTCGCCATGACCTCACCAG 61.021 60.000 0.00 0.00 0.00 4.00
2967 3512 1.003839 GTTCGCCATGACCTCACCA 60.004 57.895 0.00 0.00 0.00 4.17
2968 3513 1.745489 GGTTCGCCATGACCTCACC 60.745 63.158 0.00 0.00 37.19 4.02
2969 3514 1.745489 GGGTTCGCCATGACCTCAC 60.745 63.158 0.00 0.00 39.65 3.51
2970 3515 1.488705 AAGGGTTCGCCATGACCTCA 61.489 55.000 0.00 0.00 39.65 3.86
2971 3516 1.026718 CAAGGGTTCGCCATGACCTC 61.027 60.000 0.00 0.00 39.65 3.85
2972 3517 1.002134 CAAGGGTTCGCCATGACCT 60.002 57.895 0.00 0.00 39.65 3.85
2973 3518 2.700773 GCAAGGGTTCGCCATGACC 61.701 63.158 0.00 0.00 39.65 4.02
2974 3519 1.675641 AGCAAGGGTTCGCCATGAC 60.676 57.895 0.00 0.00 39.65 3.06
2975 3520 1.675310 CAGCAAGGGTTCGCCATGA 60.675 57.895 0.00 0.00 39.65 3.07
2976 3521 2.703798 CCAGCAAGGGTTCGCCATG 61.704 63.158 0.00 0.00 39.65 3.66
2977 3522 2.361610 CCAGCAAGGGTTCGCCAT 60.362 61.111 0.00 0.00 39.65 4.40
2978 3523 3.884774 ACCAGCAAGGGTTCGCCA 61.885 61.111 0.04 0.00 43.89 5.69
2979 3524 3.365265 CACCAGCAAGGGTTCGCC 61.365 66.667 0.04 0.00 43.89 5.54
2980 3525 3.365265 CCACCAGCAAGGGTTCGC 61.365 66.667 0.04 0.00 43.89 4.70
2981 3526 2.672996 CCCACCAGCAAGGGTTCG 60.673 66.667 0.04 0.00 43.89 3.95
2986 3531 2.598394 CACCACCCACCAGCAAGG 60.598 66.667 0.00 0.00 45.67 3.61
2987 3532 2.598394 CCACCACCCACCAGCAAG 60.598 66.667 0.00 0.00 0.00 4.01
2988 3533 4.912395 GCCACCACCCACCAGCAA 62.912 66.667 0.00 0.00 0.00 3.91
3005 3550 2.835701 TTTAGAGACAGGCTGCGGCG 62.836 60.000 15.89 0.51 39.81 6.46
3006 3551 0.673644 TTTTAGAGACAGGCTGCGGC 60.674 55.000 15.89 9.72 37.82 6.53
3007 3552 1.464997 GTTTTTAGAGACAGGCTGCGG 59.535 52.381 15.89 0.00 0.00 5.69
3008 3553 2.158449 CAGTTTTTAGAGACAGGCTGCG 59.842 50.000 15.89 0.00 0.00 5.18
3009 3554 3.142174 ACAGTTTTTAGAGACAGGCTGC 58.858 45.455 15.89 7.65 0.00 5.25
3010 3555 4.932200 CCTACAGTTTTTAGAGACAGGCTG 59.068 45.833 14.16 14.16 0.00 4.85
3011 3556 4.838986 TCCTACAGTTTTTAGAGACAGGCT 59.161 41.667 0.00 0.00 0.00 4.58
3012 3557 5.148651 TCCTACAGTTTTTAGAGACAGGC 57.851 43.478 0.00 0.00 0.00 4.85
3013 3558 8.446599 TTTTTCCTACAGTTTTTAGAGACAGG 57.553 34.615 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.