>input_sequence_62317
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-----------------------------------------------------------ATGACGGGCAAGGCGAAGCCG
AAGAAGCACACGGCCAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACCAACCGCGGCGGGGGCAAGGCCGGGCAGAA
GGACCGGCTCGGGCAGGAGAAGGGCGGCCACGCCAAGATGGAGTGCCCGCTCTGCAAGGTGACGGCCCCCGACGTCAAGT
CGATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGACCCGGACAAGATCAACAACCTGCACGGCTCCACC
GCCGCCGCGCCCGCC---GCGGCCGCCGTCGCCTCCACCTCCAAGCCCAAGCCCGGCATCCGCGGCAGCCTCAAGAAGAC
GGGGTAATCTAAACCCCCCCTACCC-TACCCTACCTTGCATCCAAACCCCTCTATGGTCG---------TCCGCTCCGAT
CTGCCGTGGTCGTCGCCTGCATCTGCTGTCTTAAGTTTAGTA----CTGCCGCTGATGCTGCCGTTGCTGCTGCTCTAAA
ATATTGATGCTGTTGCTGCTGCTGATGCGTGTGGTGTGTCGTCGTGTGATAGACGCGTGATTTC-TTTTCCCTGTATACT
TGAGGCCGTGTGGCCTCATCGCCATGTTTAATTACCTGTCGCTACTCTAAGATGCTGGCAAATTGTTTGCTGATGTTAAT
GTCTAGTGGCGCTCGAGCGATCTGAAAAGATCTGCTGCCGATCCAGTTCCTCCAATTGGCGGCTAAAGTGCGTGAATCGG
GGATTTGCGCTTGTGTTAGTGTCCTCGGTGCGCCGTAAGAAGTATTTTACCTCGTTGATTCTCAGCTATTGATGAAGCTG
CCCCTTTTTAGCAAGGGAGGGATGTCGATTTCATACACAAGTCCATGCTTTAGAATGCTCAACTCTCCTTT-TTCTTCGT
GCCATGTGGTTCCTTATGCCATGTTCATTATGCATCATCGATCGATCGGTCAGAATTGGTATCCTGGGAGTATGGTTGAT
ACTCCTGGTGGTATCACTGGCAGCCTTGCTGCCCTTAGTTTGATGATGAATGAATCTGCCATTGCAGCGATGAACAGAAA
TGA-----------------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G403200
CTTACCCGTGATCTGGCTGGCAACTTTGAAGGTATCATACACCACCGTTCTGTTGTCAGTATCTCTTTTGCTGCATATTT
GCTGGGGTTATTTACCTTAGAGACATTGCCGTTATGCGCCTTTTAATTTGAACGATAAATGATCATCAGCAAGC-AAATA
TTCCCGCTTAGTTCTGCAAGATTGTTGGCCGATACCTTTGTTACAAACGCATGAGTCTCGTAGTAATTTTGTACTGTG-A
AAATCTCTAGAGGAACATCTCCTACCTTTATATAAAGAAA------------------------CAGTTGAAGCACTGTC
CCTATTGGTTTATGCAAATGCTGCGCCTTTCTGTAGACGAAGCTCCACCACTGCCCCGT------AGAGGAATCTCCAAC
AAACCTCCACCACTACACAGTATACAGCAATATTCTCTTTTTTCCTTTGACGCGTGCTGCAGTATTCCCTTTCCCTCGCA
GAAACAGAAATATTGTCCACCACTACG----------------------------------TTTCTCATACGATAGAATC
CCGTTCCTTTTTCTCATACGATAATCTACAATCCTCCTTTTCTCGTACGAGAGACACTATAATGAATGAATACATCCCCT
AAAAATAAATAAATAAATAAATAAATGAAAACATAAAAAACGAATAGAGCCCGTGGCTTAAATAAAGAATAGAAAAAAAA
AAGAGTTATGCAAAGACACGGCGAGCAACCCTAGAAGCCGCATCTTCCATC-----------------------------
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CAACCAACATATTTTTCTTCCATCTTTCATAGTATAA-AAAAAAAAGGAGGAATCCTAGAAGGGCCATCAGGGCCGCTGG
CTCCAGATCGGACGGCGGAGCGGGCGGAGCAGCGCGC-CCCAGGGGGCCTAATAATTGGCG-CCCCCCATCCGCACCCGA
GCCGCCCCCAACCCCCGTCCCGTCAAACGCAAAGAAGACAAGCGCAGCAAGTAGGGTTAGGAGAGCCGGCGGCGGCGGCG
GCGGCGGAAAGCGAGAGCTCCAGCGGGCCGTC-GGGAGGAACCGGCCTCCTCGTCGGAGATGACGGGCAAGGCGAAGCCG
AAGAAGCACACGGCCAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACCAACCGCGGCGGGGGCAAGGCCGGGCAGAA
GGACCGGCTCGGGCAGGAGAAGGGCGGCCACGCCAAGATGGAGTGCCCGCTCTGCAAGGTGACGGCCCCCGACGTCAAGT
CGATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGACCCGGACAAGATCAACAACCTGCACGGCTCCACC
GCCGCCGCGCCCGCC---GCGGCCGCCGTCGCCTCCACCTCCAAGCCCAAGCCCGGCATCCGCGGCAGCCTCAAGAAGAC
GGGGTAATCTAAACCCCCCCTACCC-TACCCTACCTTGCATCCAAACCCCTCTATGGTCG---------TCCGCTCCGAT
CTGCCGTGGTCGTCGCCTGCATCTGCTGTCTTAAGTTTAGTA----CTGCCGCTGATGCTGCCGTTGCTGCTGCTCTAAA
ATATTGATGCTGTTGCTGCTGCTGATGCGTGTGGTGTGTCGTCGTGTGATAGACGCGTGATTTC-TTTTCCCTGTATACT
TGAGGCCGTGTGGCCTCATCGCCATGTTTAATTACCTGTCGCTACTCTAAGATGCTGGCAAATTGTTTGCTGATGTTAAT
GTCTAGTGGCGCTCGAGCGATCTGAAAAGATCTGCTGCCGATCCAGTTCCTCCAATTGGCGGCTAAAGTGCGTGAATCGG
GGATTTGCGCTTGTGTTAGTGTCCTCGGTGCGCCGTAAGAAGTATTTTACCTCGTTGATTCTCAGCTATTGATGAAGCTG
CCCCTTTTTAGCAAGGGAGGGATGTCGATTTCATACACAAGTCCATGCTTTAGAATGCTCAACTCTCCTTT-TTCTTCGT
GCCATGTGGTTCCTTATGCCATGTTCATTATGCATCATCGATCGATCGGTCAGAATTGGTATCCTGGGAGTATGGTTGAT
ACTCCTGGTGGTATCACTGGCAGCCTTGCTGCCCTTAGTTTGATGATGAATGAATCTGCCATTGCAGCGATGAACAGAAA
TGAGGCCTCCACAGCTTCAAGCGCCTCTTCTAAGTCTCTGTTTGCCGTAGCAATGGATTGTTATGACCACTGTCTCGTTT
GGTCGG----TCGTTTTAAGATATTTGGTTGTCTTGTAATCGGATATATTATGCGCTCCAGAACATCTGGGATGAGCTAA
AC-TGAGCCTAAATAACTGGTTGCTGTCAATTTGCTTGGTACCTAGA---AGTGTGGCAACTGATGTTGGGGGATAAACA
CCTCAACTGAACGCTGCCCTTTATAACAATGATGAATAGTCTGGCGTTGTCGATG--CACTTTTGTTATTGCATTG-CCC
ACTGAAGAGGCATTGCAATGATGTGATATTATGATATGCTTGAAGCACGCCTAGTGACTTTGATGGCATGGAATCTTTGA
TGCTTGAAGCAATGGTGAGAAGTACTTTCCTAC-------------CATTTTGATTGAATGGAATTGATGCTGAAATTAT
-GTCAGCCATGAAAGTAGTAAATTGTTACCTGGAGGTCGAAGGTCCATTCACTGGTGTGACTTTTCGTCTCCACTTAAAC
CTGGTGGCAGCTTTTTAAAACGAGCTTAACATTCTGTGTTACCATCACTGTAACTGCATCATAGCTCGCTTGTGTTTTGC
ATGTAGCAACATAGTGGTATTTTAGTTTGTGCATTTAACTGGAATCAGCACGCCGGAGTTCCC-TTGGCGTAACCAGTGC
TGCTTAAGGGCGGTGTTTGGAGCGCATAAATGTTGTAGGAATTGTGTAAGGCCCTGGAGGGGATTGAGTGGGATTTTGAC
TGTATGGGATTTAATCCTCCCAATCCATTCCAATCCCCTTCAAATCCTGTTGCAACCGAACAAGCCCCAAGTGGGATTGC
CTATGCTGCGCTTTCTTCTTCCTCACCACAGCCGCTGCGTCCTCTCACGCTAGCTGTGCTGTCCCCATTTCTGGTGAGGT
CATGGCGAACCCTTGCTGGTGGGTGGTGGCGCCGCAGCCTGTCTCTAAAAACTGTAGGAAAAATAACAT
>chr7B_3
--TACCCGTGATCTGGCTGGCAACTTTGAAGGCATCACACACCACCGTTTTGTTGTCAGCATCTCTTTTTCTGCATATTT
GCTGGGGTTATTTACCTCAGAGAAAGTGCCGTTATGCGCCTTTTAATCTGAACGATAAATGTTCATCAGCAAACAAAATA
TTCCTGCTTAGTACCTTC---------------------GTTGGAAACGCATGAATCTAACAGTAATTCTATACTGTAAA
AAATCTCTGTAGAAACACTTCCGGCCTTTATAATGAAACAGCTCACACTTTTCTAGCCTGAAAGCAGTTCAAGCACTGCC
CCTATGGGTCTATCCAAATGCTGCACCTTTGTGTCGATAAAGCTCCACCACCGGCCCCGTAGAGGAGAAGAATCTCCAAC
AAACCTCAACCACCACACACTACAGTAGCTTA------TTTTTTTTTTGACGCGCACAGTAGTATTCTCTTTGCCTCGCA
GAAATAGAAATATTCTCATACGATAAGAAAAAGAAATAGAAATATTCTGTTCTACCACGCCTCTCACATATGATAAAATC
CTATTTCTTGTTCTCATAGGATAATCTACAATCCTCGTTTTCTGGTACGATTATATAGGAGTAGTATAGATAGATACC--
---AATAAATACATAAA-------------------AATAATAATAGAGTCCATGGTTTGAAGAATAAGGAAAAAAGGAG
CTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CAACCAACATATGTTTCTTCCAAA------------------------AGGAATCCTACAATCATCATCAGGGCCGCTGG
CTCCAGATCGGACGGCGGAGCGAGCACAGC--CGCGC-CCCAGGGGGCCTAATAATTGGCG-CCCCCCATCCGCCCCCGA
GCCGCCCCCAACCCCCGTCCCGTCAAACGCAAAGAAGACAAGCGCAACAAGTAGGGTTAGGAGAGGAGGAGTCGGCGGCG
GCGGCGGAAAGCGAGAGC------GGGTCGTC-GGAAGGAACCGCCCTCGTCGTCGGAGATGACGGGCAAGGCGAAGCCG
AAGAAGCACACGGCCAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACCAACCGCGGCGGGGGCAAGGCCGGGCAGAA
GGACCGGCTCGGGCAGGAGAAGGGCGGCCACGCCAAGATGGAGTGCCCGCTCTGCAAGGTGACAGCCCCGGACGTCAAGT
CGATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGACCCGGACAAGATCAACAACCTGCACGGCTCCACC
GCCGCCGCGCCCGCC---GCGGCGGCCGTCGCGTCCACCTCCAAGCCCAAGCCCGGCATCCGCGGCAGCCTCAAGAAGAC
GGGGTAATCTAAACCC------CCC-TACCCTACCTTGCATCCAAACCCCCCTATGGTCG---------TCC-----GAT
CTGCGGTGGTCGTCGCCTGCATCTGCTGTCTTA-GTTTACTA----CTGCCGCTGATGCTGCCGTTGCTGCTGCTCTAAA
TTATTGCCGCTGTTGCTGCTGCCGATGCGTGTGGTGTGTCG---TGTGATAGATGCGTGATTTC-TTTTCCCTGTATACT
TGAGGCCGTGTGGCCTCGTCGCCATGTTTAATTACCTGTCGCTACTCTAAGATGCTGGCAAATTGTTTGCTGATATTAAT
GTCTAGTGGCGCTCGAGCGATCTGAAAAGATCTGCTGTCGAGCCAGTTCCTCCAATTGGCTGCTAAAGTGCATGAATCGG
GGATTTGCGCTTGTGTTAGTGTCCTCGGTGCGCCGTGAGAAGTATTGATTTAGTTGT-----------------------
CCCTTTTTTAGCAAGGGAACAACATCGTTTCCATACACAAATCCATGCTTTAGAATGCTCAACTCTCCTTTTTTCTTCGT
GCCATGCGGTTCCTTATGCCATGTTCATTATGCATCATCGATCGATCGGTCAGAATTGGTCTCCTGGGAGTATGGTTGAT
ACTCCTGGTGGTATCACTGGCAGCCTAGCTGCTCTCAGTTTGATGATGAATGAATCTGCCATTGCAGCGATGAACAGAAA
TGAGGCCTCCACAGCTTCAAGCGCCTCTTCTAAGTCTCTGTTTGCCGTCGCAATGGATTGTTATGACTACTGTCTTGTTT
GGTCGG----TCGTTTTAAGATATTTGGTTGTCTTGTAATCGGATATATTATGTGCTCCAGAACATCTGGGATGAGCTAA
AC-TGAGCCTAAATAACTGGTTGCTGTCAATTTGCTTGGTACCTAGA---AGGGTGGCAACTGATGTTGTGGGATAAACA
CCTTAACTAATCGCTGCCCTTTATAACAATGATGAATAGTCTAGTGTTGTTGATAAACACCTTAGTTATTGCATTG-CCC
ACTGAAGAGGCATTGCAATGATGTGATATTATGATATGCTTGA-------------------------------------
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>chr7A_599
ATGAATATACGT--------------------------------------------------------------------
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--------------------------------AAAAAAAGTAAACAGAGTCCGTGGTTTTAAGAAATAGGAAAAG--AAA
AGGAGTTATGCAAAGACACGGCGAGCAACCCTAGAAGCCGCATCTTCCACT-----------------------------
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CAACCAATATATTTTTCTTTCATCTAGTATATCATATTAAAAAAAAGGAGGAATCCTACAATCAGCATCAGGGCCGCTGG
CTCCAGATCGGACGGTGGAGCGGGCAGAGC--CGCGCGCCCAGGGGGCCTAATAATTGGCGTCCCCCCATCCGCCCCCGA
GCCGCCCCCAAACCCCGTCCCGTCAAACGCAAAGAAGACAAGCGCAGCAAGTAGGGTTAGGAGAGCCGGCGGCGGCGGCG
GCGGCGGAAAGCGAGAGCTCCAGCGGGCCGTCGGGAGGGAACCACCCTCGTCGTCGGAGATGACGGGCAAGGCGAAGCCG
AAGAAGCACACGGCCAAGGAGATCGCGGCTAAGATCGACGCGGCGACGACCAACCGCGGCGGGGGCAAGGCCGGGCAGAA
GGACCGGCTCGGGCAGGAGAAGGGCGGCCACGCCAAGATGGAGTGCCCGCTCTGCAAGGTGACGGCCCCCGACGTCAAGT
CGATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGACCCCGAGAAGATCAACAACCTGCACGGCTCCACC
GCCGCGGCTCCCGCGGCGGCGGCCGCCGTCGCCTCCACCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGAC
GGGGTAATCTAAACCC------CCCATACCCTACCTTGCATCCAAACCCCTCTATGGTCGGTCGTCCGCTCC-----GAT
CTACTATGGTCGTCGCCTGCATCTGCTGTCTTAAGTTTACTATATGCTGCCGCTGATGCTGC------TGCTGCTCTAAA
ATATTGATGCTGTTGCTGCTGCTGATGCGTGTGGTGTGTCG---TGTGCTAGACGCGTGATTTTTTTTTACCTGTACACA
TGAGGCCGTGTGGCCTCATTGCCATGTTTAATTACCTGTCGCTACTCTAAGATGCTGGCAAATTGTTTGCTGATGTTAAT
GTCTAGTGGCGCTCGAGAGATCTG-AAAGATCTGCTGTCGATCCAGTTCCTCCAATTGGCGGCTAAAGTGCATGAATCGG
GGATTTGCGCTTGAGTTTCTTATCC-----CGCCGTAAGAAGTATTTTACCTCGTCGATTCTCGGCTATTGATGAAGCTG
TCCCTTTTTAGCAAGGGAGCAACATCGTTTCCATACACAACTCCATGCTTTAGAATGCTCAACTCTCCTTTTT-CTTCCT
GCCATTCGGTTACTTATGCCATGTTCATTAAGCATCATGGATCGATCGGTCAGAATTGGTCTCCTGGGAGTATTCTCAAT
ATTCCTGGTGGTATCACTGGCAGCCTTGCTGCCCCCAGTTTGATGATGAATGAATTTGCCATTGCAGCGATGAACAGAAA
TGAGGCCTCCACAGCTTCAAGCGCCTCTTCTAAGTCTCTGTTTGCCGTCGCAATGGATTGTTATGACTACTGTCTCGTTT
GATCGGTTGATCGTTTTAAGATATTTGGTTGTCTTGTAATCGGATATATTATGCGCTCCAGAACATCTGAGATGTACTAA
ACTTGAGCCTAAATAACTGGTTGCTGTCAATTTGCTTGGTACCGTCTTAGAGTGTGGCAACTGATGTTGGGGGATAATCA
CCTCAACTGAACGCTGCCCTTTATAACAATGA---ATAGTCTGGTTTTGTCGATG--CACTTTTGTTATTGCATTGCCCC
ACTGAAGAGGCATTGCAATGATGTGATATTATGATATGCTTGAAGCACGCCTAGTGACTTTGATGGCATGGAATCTTTGA
TGCTTCAAGCAATGGTGAGAAGTACTTTATTAACATTCCCGCAGTTCATTTTGATTGCATGGAATTGATGCTGAAATTAT
TGTCAGCCATGAAACTAGTAAATTGTTACCTGGAGGTCGAAGGTCCATTCATTGGTGTGACTTTTCTTCTCTAAGTTTGG
TTTTG----GCTTTTTAAAATGAGCTTAATATTCAGTGTTAACCTCACTGTAACTGCATCATAGCTCACTTATGTTTTGT
AT---------------------AGTATGTCCGTTTAACTGGAATCAGTACGCCGGAATTCCCTTTGGCGTAACCAGTGC
TGCTTAAGGGCCATGTTTGTAGTGCA------------------------------------------------------
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>SNPs
S-------------------------------S----S-----------S---------S---------S----------
-----------------S-----S-S---------------------S-------------S----------S-------
----S-------S-SSSSSSSSSSSSSSSSSSSSSSSSS---SS----------S---SSS-------S-S------S--
--------SS--S----SS---SS--------SSS-S-S------------------------------S--------S-
-----S---S---S----------S-----S---S--SS------------S-S---SS---------S-----------
-------S-----S-----S--S-SSSSSS--SSSSSS-----SS---------SS-S-S-------S----S-------
----S---------S--SSS-SS--S------------------------------------S--S----S----S----
-SS--S---S--------S-----------------S------S------SSSSSSSSSSSSS-S--SS---S--S--SS
SSS--------S-----SSSSSSSSSSSSSSS-S------SS-------S------S--S--S---S-SS-S----S---
-S-----------------------------------------------SS-----------------------------
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-------------------------SSS---SS---S---------------------S--SSSS---------------
-------------------------S----SS------------------------------------------S-----
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-----------------------------------S--------S----S------------------------------
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----------------SSSSSS--------------------------------------------------SSSSS---
----S----------------------------------S----------------------------------------
-----------------------------------------SSS------------------------------------
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-------------------------------------S---------------------------------S--------
-------------------------------------------------------S-------S----------------
-------------------SS-SS---S--S---------S---------------------------------------
------S-----------------------------------------------------S-------------------
-----------------------------------S--------------------------------------------
------------------------------------------------S------------------S------------
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--------------------------------------------S-----------------------------------
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-----S----------------------SS--S------------------------S----------------------
--------------S------------------------------------S--------------S----S-SS-SSSS
S-SSSSSSS-----------S--------S----S------S-S-----------------------S---S-------S
--SSSSSSSSSSSSSSSSSSSSS---S---S-S---------------S--------S----------------------
-----------SS------S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_485
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-----------------------------------------------------------------TCCCTTTCCCTCGCA
GAAAC---------------------------------------------------------------------------
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>reverse_2628
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-------------------------------------------------------------------CACTGTCTCGTTT
GGTCGGT-------------------------------------------------------------------------
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