Multiple sequence alignment - TraesCS7D01G397700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G397700 chr7D 100.000 2510 0 0 1 2510 512282824 512280315 0.000000e+00 4636
1 TraesCS7D01G397700 chr7B 93.884 2387 115 15 138 2510 544140418 544138049 0.000000e+00 3570
2 TraesCS7D01G397700 chr7A 93.344 2389 109 25 145 2510 585067343 585064982 0.000000e+00 3485
3 TraesCS7D01G397700 chr6D 78.957 556 81 26 981 1511 129151622 129152166 1.850000e-91 346
4 TraesCS7D01G397700 chr6B 79.330 537 77 20 1001 1511 227269167 227269695 1.850000e-91 346
5 TraesCS7D01G397700 chr6A 79.065 535 82 20 1001 1511 166507505 166506977 8.600000e-90 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G397700 chr7D 512280315 512282824 2509 True 4636 4636 100.000 1 2510 1 chr7D.!!$R1 2509
1 TraesCS7D01G397700 chr7B 544138049 544140418 2369 True 3570 3570 93.884 138 2510 1 chr7B.!!$R1 2372
2 TraesCS7D01G397700 chr7A 585064982 585067343 2361 True 3485 3485 93.344 145 2510 1 chr7A.!!$R1 2365
3 TraesCS7D01G397700 chr6D 129151622 129152166 544 False 346 346 78.957 981 1511 1 chr6D.!!$F1 530
4 TraesCS7D01G397700 chr6B 227269167 227269695 528 False 346 346 79.330 1001 1511 1 chr6B.!!$F1 510
5 TraesCS7D01G397700 chr6A 166506977 166507505 528 True 340 340 79.065 1001 1511 1 chr6A.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 403 0.169009 GCTCCGATTTGTTGGTCTGC 59.831 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 2392 0.907486 TGGCAGATCCAAGAGTGAGG 59.093 55.0 0.0 0.0 43.21 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.824515 CTCCCCTCGCCTCCTCGT 62.825 72.222 0.00 0.00 0.00 4.18
18 19 4.816984 TCCCCTCGCCTCCTCGTC 62.817 72.222 0.00 0.00 0.00 4.20
20 21 4.824515 CCCTCGCCTCCTCGTCCT 62.825 72.222 0.00 0.00 0.00 3.85
21 22 3.213402 CCTCGCCTCCTCGTCCTC 61.213 72.222 0.00 0.00 0.00 3.71
22 23 3.213402 CTCGCCTCCTCGTCCTCC 61.213 72.222 0.00 0.00 0.00 4.30
23 24 4.816984 TCGCCTCCTCGTCCTCCC 62.817 72.222 0.00 0.00 0.00 4.30
26 27 3.756783 CCTCCTCGTCCTCCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
27 28 2.123640 CTCCTCGTCCTCCCCCTC 60.124 72.222 0.00 0.00 0.00 4.30
28 29 3.742248 CTCCTCGTCCTCCCCCTCC 62.742 73.684 0.00 0.00 0.00 4.30
29 30 3.756783 CCTCGTCCTCCCCCTCCT 61.757 72.222 0.00 0.00 0.00 3.69
30 31 2.392816 CCTCGTCCTCCCCCTCCTA 61.393 68.421 0.00 0.00 0.00 2.94
31 32 1.151908 CTCGTCCTCCCCCTCCTAG 59.848 68.421 0.00 0.00 0.00 3.02
32 33 2.198980 CGTCCTCCCCCTCCTAGG 59.801 72.222 0.82 0.82 34.30 3.02
51 52 2.094100 GGTTAGTACCCCTACCCTCC 57.906 60.000 0.00 0.00 38.60 4.30
52 53 1.413662 GGTTAGTACCCCTACCCTCCC 60.414 61.905 0.00 0.00 38.60 4.30
53 54 0.944238 TTAGTACCCCTACCCTCCCC 59.056 60.000 0.00 0.00 0.00 4.81
54 55 1.006680 TAGTACCCCTACCCTCCCCC 61.007 65.000 0.00 0.00 0.00 5.40
93 94 4.541648 CCTCTCCCCCGGATCCGT 62.542 72.222 31.22 0.00 37.81 4.69
94 95 2.913060 CTCTCCCCCGGATCCGTC 60.913 72.222 31.22 0.00 37.81 4.79
95 96 3.426836 TCTCCCCCGGATCCGTCT 61.427 66.667 31.22 0.00 37.81 4.18
96 97 2.913060 CTCCCCCGGATCCGTCTC 60.913 72.222 31.22 0.00 37.81 3.36
97 98 4.534824 TCCCCCGGATCCGTCTCC 62.535 72.222 31.22 0.00 37.81 3.71
98 99 4.853142 CCCCCGGATCCGTCTCCA 62.853 72.222 31.22 0.00 37.81 3.86
99 100 3.227276 CCCCGGATCCGTCTCCAG 61.227 72.222 31.22 15.39 37.81 3.86
100 101 2.123854 CCCGGATCCGTCTCCAGA 60.124 66.667 31.22 0.00 37.81 3.86
101 102 1.531840 CCCGGATCCGTCTCCAGAT 60.532 63.158 31.22 0.00 37.81 2.90
102 103 1.115930 CCCGGATCCGTCTCCAGATT 61.116 60.000 31.22 0.00 37.81 2.40
103 104 0.753262 CCGGATCCGTCTCCAGATTT 59.247 55.000 31.22 0.00 37.81 2.17
104 105 1.961394 CCGGATCCGTCTCCAGATTTA 59.039 52.381 31.22 0.00 37.81 1.40
105 106 2.029828 CCGGATCCGTCTCCAGATTTAG 60.030 54.545 31.22 8.52 37.81 1.85
106 107 2.029828 CGGATCCGTCTCCAGATTTAGG 60.030 54.545 26.35 0.00 34.78 2.69
107 108 2.300437 GGATCCGTCTCCAGATTTAGGG 59.700 54.545 0.00 0.00 35.24 3.53
108 109 1.120530 TCCGTCTCCAGATTTAGGGC 58.879 55.000 0.00 0.00 0.00 5.19
109 110 1.123928 CCGTCTCCAGATTTAGGGCT 58.876 55.000 0.00 0.00 0.00 5.19
110 111 1.069358 CCGTCTCCAGATTTAGGGCTC 59.931 57.143 0.00 0.00 0.00 4.70
111 112 1.069358 CGTCTCCAGATTTAGGGCTCC 59.931 57.143 0.00 0.00 0.00 4.70
112 113 1.069358 GTCTCCAGATTTAGGGCTCCG 59.931 57.143 0.00 0.00 0.00 4.63
113 114 0.394565 CTCCAGATTTAGGGCTCCGG 59.605 60.000 0.00 0.00 0.00 5.14
114 115 1.227973 CCAGATTTAGGGCTCCGGC 60.228 63.158 0.00 0.00 37.82 6.13
115 116 1.700042 CCAGATTTAGGGCTCCGGCT 61.700 60.000 0.00 0.00 38.73 5.52
116 117 0.250081 CAGATTTAGGGCTCCGGCTC 60.250 60.000 0.00 0.00 39.72 4.70
117 118 1.301009 GATTTAGGGCTCCGGCTCG 60.301 63.158 0.00 0.00 45.11 5.03
136 137 2.585247 CCGATCCGGGCTCGTTTC 60.585 66.667 17.90 0.00 44.15 2.78
241 242 1.672854 TATCAGGTTCGTGGCTCGGG 61.673 60.000 9.26 0.00 40.32 5.14
396 397 2.485122 GCCCGCTCCGATTTGTTG 59.515 61.111 0.00 0.00 0.00 3.33
397 398 3.051392 GCCCGCTCCGATTTGTTGG 62.051 63.158 0.00 0.00 0.00 3.77
398 399 1.674322 CCCGCTCCGATTTGTTGGT 60.674 57.895 0.00 0.00 0.00 3.67
400 401 0.673644 CCGCTCCGATTTGTTGGTCT 60.674 55.000 0.00 0.00 0.00 3.85
402 403 0.169009 GCTCCGATTTGTTGGTCTGC 59.831 55.000 0.00 0.00 0.00 4.26
403 404 1.813513 CTCCGATTTGTTGGTCTGCT 58.186 50.000 0.00 0.00 0.00 4.24
413 414 2.158623 TGTTGGTCTGCTGTCCAATTCT 60.159 45.455 21.29 0.00 41.79 2.40
415 416 1.421268 TGGTCTGCTGTCCAATTCTGT 59.579 47.619 7.09 0.00 0.00 3.41
652 656 7.418337 TTCTTTAGAATTAATTTCCCCTGCC 57.582 36.000 1.43 0.00 34.67 4.85
653 657 5.897250 TCTTTAGAATTAATTTCCCCTGCCC 59.103 40.000 1.43 0.00 34.67 5.36
743 752 4.082571 TCGTTTAGTGGTAGTACCTTCAGC 60.083 45.833 20.07 5.77 39.58 4.26
798 807 7.538575 TCCTTTTGTAAGATAAGATGCTTTGC 58.461 34.615 0.00 0.00 32.92 3.68
823 832 3.897325 GCAACTTGCTTTACCACTTACC 58.103 45.455 6.50 0.00 40.96 2.85
827 836 4.642429 ACTTGCTTTACCACTTACCAGAG 58.358 43.478 0.00 0.00 0.00 3.35
853 862 3.472283 TTCAGTAGGCCAAAACGTGTA 57.528 42.857 5.01 0.00 0.00 2.90
891 900 6.070653 ACCATGTTCATCTGTAAATTGCCAAT 60.071 34.615 0.00 0.00 0.00 3.16
892 901 7.123997 ACCATGTTCATCTGTAAATTGCCAATA 59.876 33.333 0.00 0.00 0.00 1.90
899 908 4.107622 CTGTAAATTGCCAATACTGCAGC 58.892 43.478 15.27 0.00 40.35 5.25
903 912 1.462616 TTGCCAATACTGCAGCGATT 58.537 45.000 15.27 11.15 40.35 3.34
916 925 3.371898 TGCAGCGATTGTCTGAAATACAG 59.628 43.478 8.15 0.00 46.97 2.74
933 942 0.457035 CAGTTTGTGCCTGTGCTGTT 59.543 50.000 0.00 0.00 38.71 3.16
949 959 7.385778 TGTGCTGTTTATAATAACCCTTGTC 57.614 36.000 0.00 0.00 0.00 3.18
1038 1048 4.316823 TGCCAGTCTCGGGAGGGT 62.317 66.667 4.92 0.00 0.00 4.34
1065 1075 1.463056 CTTTGCGTCAATAACTGCGGA 59.537 47.619 0.00 0.00 32.41 5.54
1200 1210 1.225745 CGATGCCGCGAAAGAACAC 60.226 57.895 8.23 0.00 0.00 3.32
1516 1544 2.625790 CTCGACAAGATCTAGGAAGGGG 59.374 54.545 0.00 0.00 0.00 4.79
1519 1547 1.010170 ACAAGATCTAGGAAGGGGCCT 59.990 52.381 0.84 0.00 42.15 5.19
1799 1830 4.116747 AGCACTCTGTAATGTACTGCTC 57.883 45.455 0.00 0.00 33.00 4.26
1810 1841 2.889512 TGTACTGCTCTTTCCTCCTGA 58.110 47.619 0.00 0.00 0.00 3.86
1814 1849 2.641815 ACTGCTCTTTCCTCCTGATGTT 59.358 45.455 0.00 0.00 0.00 2.71
1896 1933 2.638480 ATGGTACCCATGGTCATTCG 57.362 50.000 11.73 0.00 43.39 3.34
1906 1943 0.321564 TGGTCATTCGCCCTTGTCAG 60.322 55.000 0.00 0.00 0.00 3.51
1912 1949 2.922740 TTCGCCCTTGTCAGTAGTTT 57.077 45.000 0.00 0.00 0.00 2.66
1915 1952 2.367567 TCGCCCTTGTCAGTAGTTTCTT 59.632 45.455 0.00 0.00 0.00 2.52
1926 1963 6.931281 TGTCAGTAGTTTCTTTCTTCCTGATG 59.069 38.462 0.00 0.00 0.00 3.07
1927 1964 7.155328 GTCAGTAGTTTCTTTCTTCCTGATGA 58.845 38.462 0.00 0.00 0.00 2.92
1928 1965 7.821846 GTCAGTAGTTTCTTTCTTCCTGATGAT 59.178 37.037 0.00 0.00 0.00 2.45
1929 1966 9.035890 TCAGTAGTTTCTTTCTTCCTGATGATA 57.964 33.333 0.00 0.00 0.00 2.15
1930 1967 9.311916 CAGTAGTTTCTTTCTTCCTGATGATAG 57.688 37.037 0.00 0.00 0.00 2.08
1942 1979 4.403752 TCCTGATGATAGTCAGACCAGTTG 59.596 45.833 5.53 0.00 46.77 3.16
1993 2035 0.401105 AGCTGGGCTATCTCCACCAT 60.401 55.000 0.00 0.00 36.99 3.55
2036 2078 4.082125 GGTGAGATGTTGGTGGAATTCTT 58.918 43.478 5.23 0.00 0.00 2.52
2139 2182 0.673644 CTGGCTAGGTTGGAACACGG 60.674 60.000 0.00 0.00 39.29 4.94
2161 2204 1.588082 CAGGACCAAATGCAGTGGC 59.412 57.895 17.14 10.77 40.02 5.01
2248 2291 2.285220 CGTTTGGCTTCTACGATCATGG 59.715 50.000 0.00 0.00 37.47 3.66
2259 2302 2.558378 ACGATCATGGTCTGCATTCTG 58.442 47.619 4.09 0.00 0.00 3.02
2301 2344 3.459232 TTCTACTGCTCTATGCGCATT 57.541 42.857 30.42 11.21 46.63 3.56
2307 2350 3.103738 CTGCTCTATGCGCATTGTTTTC 58.896 45.455 30.42 15.99 46.63 2.29
2349 2392 2.945668 GTCTCTCTCTCTCTCTCTTGCC 59.054 54.545 0.00 0.00 0.00 4.52
2353 2396 1.638070 TCTCTCTCTCTCTTGCCCTCA 59.362 52.381 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.824515 ACGAGGAGGCGAGGGGAG 62.825 72.222 0.00 0.00 34.83 4.30
1 2 4.816984 GACGAGGAGGCGAGGGGA 62.817 72.222 0.00 0.00 34.83 4.81
3 4 4.824515 AGGACGAGGAGGCGAGGG 62.825 72.222 0.00 0.00 34.83 4.30
4 5 3.213402 GAGGACGAGGAGGCGAGG 61.213 72.222 0.00 0.00 34.83 4.63
5 6 3.213402 GGAGGACGAGGAGGCGAG 61.213 72.222 0.00 0.00 34.83 5.03
6 7 4.816984 GGGAGGACGAGGAGGCGA 62.817 72.222 0.00 0.00 34.83 5.54
9 10 3.742248 GAGGGGGAGGACGAGGAGG 62.742 73.684 0.00 0.00 0.00 4.30
10 11 2.123640 GAGGGGGAGGACGAGGAG 60.124 72.222 0.00 0.00 0.00 3.69
11 12 2.870597 TAGGAGGGGGAGGACGAGGA 62.871 65.000 0.00 0.00 0.00 3.71
12 13 2.360439 CTAGGAGGGGGAGGACGAGG 62.360 70.000 0.00 0.00 0.00 4.63
13 14 1.151908 CTAGGAGGGGGAGGACGAG 59.848 68.421 0.00 0.00 0.00 4.18
14 15 2.392816 CCTAGGAGGGGGAGGACGA 61.393 68.421 1.05 0.00 31.45 4.20
15 16 2.198980 CCTAGGAGGGGGAGGACG 59.801 72.222 1.05 0.00 31.45 4.79
33 34 1.413662 GGGGAGGGTAGGGGTACTAAC 60.414 61.905 0.00 0.00 38.73 2.34
34 35 0.944238 GGGGAGGGTAGGGGTACTAA 59.056 60.000 0.00 0.00 32.37 2.24
35 36 1.006680 GGGGGAGGGTAGGGGTACTA 61.007 65.000 0.00 0.00 0.00 1.82
36 37 2.339200 GGGGGAGGGTAGGGGTACT 61.339 68.421 0.00 0.00 0.00 2.73
37 38 2.288294 GGGGGAGGGTAGGGGTAC 59.712 72.222 0.00 0.00 0.00 3.34
76 77 4.541648 ACGGATCCGGGGGAGAGG 62.542 72.222 35.87 7.52 44.69 3.69
77 78 2.913060 GACGGATCCGGGGGAGAG 60.913 72.222 35.87 8.28 44.69 3.20
78 79 3.426836 AGACGGATCCGGGGGAGA 61.427 66.667 35.87 0.00 44.69 3.71
79 80 2.913060 GAGACGGATCCGGGGGAG 60.913 72.222 35.87 9.83 44.69 4.30
80 81 4.534824 GGAGACGGATCCGGGGGA 62.535 72.222 35.87 0.00 44.69 4.81
81 82 4.853142 TGGAGACGGATCCGGGGG 62.853 72.222 35.87 11.00 42.77 5.40
82 83 3.227276 CTGGAGACGGATCCGGGG 61.227 72.222 35.87 15.66 42.77 5.73
83 84 2.123854 TCTGGAGACGGATCCGGG 60.124 66.667 35.87 18.22 44.66 5.73
90 91 1.069358 GAGCCCTAAATCTGGAGACGG 59.931 57.143 0.00 0.00 38.41 4.79
91 92 1.069358 GGAGCCCTAAATCTGGAGACG 59.931 57.143 0.00 0.00 0.00 4.18
92 93 1.069358 CGGAGCCCTAAATCTGGAGAC 59.931 57.143 0.00 0.00 0.00 3.36
93 94 1.414158 CGGAGCCCTAAATCTGGAGA 58.586 55.000 0.00 0.00 0.00 3.71
94 95 0.394565 CCGGAGCCCTAAATCTGGAG 59.605 60.000 0.00 0.00 43.58 3.86
95 96 1.696097 GCCGGAGCCCTAAATCTGGA 61.696 60.000 5.05 0.00 43.58 3.86
96 97 1.227973 GCCGGAGCCCTAAATCTGG 60.228 63.158 5.05 0.00 43.70 3.86
97 98 0.250081 GAGCCGGAGCCCTAAATCTG 60.250 60.000 5.05 0.00 41.25 2.90
98 99 1.749334 CGAGCCGGAGCCCTAAATCT 61.749 60.000 5.05 0.00 41.25 2.40
99 100 1.301009 CGAGCCGGAGCCCTAAATC 60.301 63.158 5.05 0.00 41.25 2.17
100 101 2.822399 CGAGCCGGAGCCCTAAAT 59.178 61.111 5.05 0.00 41.25 1.40
118 119 4.832608 AAACGAGCCCGGATCGGC 62.833 66.667 27.55 12.38 46.07 5.54
119 120 2.585247 GAAACGAGCCCGGATCGG 60.585 66.667 27.55 10.96 46.07 4.18
121 122 2.203029 GGGAAACGAGCCCGGATC 60.203 66.667 0.73 0.00 40.78 3.36
241 242 2.606826 ACCGGGAACAGAGGGTCC 60.607 66.667 6.32 0.00 0.00 4.46
396 397 2.191128 ACAGAATTGGACAGCAGACC 57.809 50.000 0.00 0.00 0.00 3.85
397 398 4.193826 TCTACAGAATTGGACAGCAGAC 57.806 45.455 0.00 0.00 0.00 3.51
398 399 4.569943 GTTCTACAGAATTGGACAGCAGA 58.430 43.478 0.00 0.00 36.33 4.26
400 401 3.325870 CGTTCTACAGAATTGGACAGCA 58.674 45.455 0.00 0.00 36.33 4.41
402 403 2.673368 GCCGTTCTACAGAATTGGACAG 59.327 50.000 14.14 0.00 35.64 3.51
403 404 2.695359 GCCGTTCTACAGAATTGGACA 58.305 47.619 14.14 0.00 35.64 4.02
413 414 2.177531 GCTCGTCGCCGTTCTACA 59.822 61.111 0.00 0.00 35.01 2.74
454 455 1.205417 GGCCGCCTTTACTACTACACA 59.795 52.381 0.71 0.00 0.00 3.72
455 456 1.800286 CGGCCGCCTTTACTACTACAC 60.800 57.143 14.67 0.00 0.00 2.90
652 656 1.524165 GGCATCAGAGCAGAGCAGG 60.524 63.158 0.00 0.00 35.83 4.85
653 657 1.883544 CGGCATCAGAGCAGAGCAG 60.884 63.158 0.00 0.00 35.83 4.24
808 817 4.385825 CAACTCTGGTAAGTGGTAAAGCA 58.614 43.478 0.00 0.00 0.00 3.91
809 818 3.751698 CCAACTCTGGTAAGTGGTAAAGC 59.248 47.826 0.00 0.00 38.00 3.51
811 820 5.836024 ATCCAACTCTGGTAAGTGGTAAA 57.164 39.130 0.00 0.00 43.97 2.01
813 822 4.841813 TGAATCCAACTCTGGTAAGTGGTA 59.158 41.667 0.00 0.00 43.97 3.25
814 823 3.650942 TGAATCCAACTCTGGTAAGTGGT 59.349 43.478 0.00 0.00 43.97 4.16
815 824 4.256920 CTGAATCCAACTCTGGTAAGTGG 58.743 47.826 0.00 0.00 43.97 4.00
816 825 4.899502 ACTGAATCCAACTCTGGTAAGTG 58.100 43.478 0.00 0.00 43.97 3.16
817 826 5.187967 CCTACTGAATCCAACTCTGGTAAGT 59.812 44.000 0.00 0.00 43.97 2.24
818 827 5.665459 CCTACTGAATCCAACTCTGGTAAG 58.335 45.833 0.00 0.00 43.97 2.34
819 828 4.081087 GCCTACTGAATCCAACTCTGGTAA 60.081 45.833 0.00 0.00 43.97 2.85
821 830 2.237392 GCCTACTGAATCCAACTCTGGT 59.763 50.000 0.00 0.00 43.97 4.00
822 831 2.420687 GGCCTACTGAATCCAACTCTGG 60.421 54.545 0.00 0.00 45.08 3.86
823 832 2.237143 TGGCCTACTGAATCCAACTCTG 59.763 50.000 3.32 0.00 0.00 3.35
827 836 3.365969 CGTTTTGGCCTACTGAATCCAAC 60.366 47.826 3.32 0.00 38.21 3.77
853 862 9.281371 CAGATGAACATGGTATAATCTTCACAT 57.719 33.333 0.00 0.00 0.00 3.21
891 900 2.741759 TTCAGACAATCGCTGCAGTA 57.258 45.000 16.64 4.31 33.45 2.74
892 901 1.882912 TTTCAGACAATCGCTGCAGT 58.117 45.000 16.64 0.00 33.45 4.40
899 908 5.565259 GCACAAACTGTATTTCAGACAATCG 59.435 40.000 1.79 0.00 46.27 3.34
903 912 4.275689 CAGGCACAAACTGTATTTCAGACA 59.724 41.667 1.79 0.00 46.27 3.41
916 925 2.861462 TAAACAGCACAGGCACAAAC 57.139 45.000 0.00 0.00 44.61 2.93
949 959 2.418628 ACACGGTCAAGACAAACACTTG 59.581 45.455 2.29 0.00 43.92 3.16
1038 1048 3.013921 GTTATTGACGCAAAGGATGGGA 58.986 45.455 0.00 0.00 44.39 4.37
1065 1075 2.964978 GCCGCACTGCCAAAGAAT 59.035 55.556 0.00 0.00 0.00 2.40
1799 1830 4.392940 ACAGACAAACATCAGGAGGAAAG 58.607 43.478 0.00 0.00 0.00 2.62
1896 1933 4.390264 AGAAAGAAACTACTGACAAGGGC 58.610 43.478 0.00 0.00 0.00 5.19
1906 1943 9.308318 GACTATCATCAGGAAGAAAGAAACTAC 57.692 37.037 0.00 0.00 0.00 2.73
1912 1949 6.097554 GGTCTGACTATCATCAGGAAGAAAGA 59.902 42.308 7.85 0.00 45.30 2.52
1915 1952 5.272402 TGGTCTGACTATCATCAGGAAGAA 58.728 41.667 7.85 0.00 45.30 2.52
1926 1963 1.134371 GGGCCAACTGGTCTGACTATC 60.134 57.143 4.39 0.00 40.38 2.08
1927 1964 0.912486 GGGCCAACTGGTCTGACTAT 59.088 55.000 4.39 0.00 40.38 2.12
1928 1965 1.198759 GGGGCCAACTGGTCTGACTA 61.199 60.000 4.39 0.00 40.38 2.59
1929 1966 2.529744 GGGGCCAACTGGTCTGACT 61.530 63.158 4.39 0.00 40.38 3.41
1930 1967 2.034221 GGGGCCAACTGGTCTGAC 59.966 66.667 4.39 0.00 40.38 3.51
1942 1979 4.023291 TGATGTAAATTTTCTCAGGGGCC 58.977 43.478 0.00 0.00 0.00 5.80
1993 2035 6.719829 TCACCTGACACTGAACTTCTATCTTA 59.280 38.462 0.00 0.00 0.00 2.10
2036 2078 2.115427 TCTCACAACCAACCTCACAGA 58.885 47.619 0.00 0.00 0.00 3.41
2139 2182 1.270550 CACTGCATTTGGTCCTGGTTC 59.729 52.381 0.00 0.00 0.00 3.62
2331 2374 1.922447 AGGGCAAGAGAGAGAGAGAGA 59.078 52.381 0.00 0.00 0.00 3.10
2332 2375 2.301346 GAGGGCAAGAGAGAGAGAGAG 58.699 57.143 0.00 0.00 0.00 3.20
2333 2376 1.638070 TGAGGGCAAGAGAGAGAGAGA 59.362 52.381 0.00 0.00 0.00 3.10
2334 2377 1.750778 GTGAGGGCAAGAGAGAGAGAG 59.249 57.143 0.00 0.00 0.00 3.20
2349 2392 0.907486 TGGCAGATCCAAGAGTGAGG 59.093 55.000 0.00 0.00 43.21 3.86
2428 2473 4.670765 AGCTTCACCAGAATTCCAGAAAT 58.329 39.130 0.65 0.00 32.31 2.17
2438 2489 1.349026 CTCAGGGAAGCTTCACCAGAA 59.651 52.381 25.09 12.17 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.