>input_sequence_77938
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-------------------------------------------------ATGGAGCACAAGGAGACCGGCTGCCAGTCTC
GGGAGGGTCCCATCCTTTGCGTCAATAACTGCGGATTCTTTGGCAGTGCGGCGACCATGAACATGTGCTCCAAGTGCCAC
AAGGAGATGGCGATGAAGCAGGAGCAGGCCAAGCTGGCTGCCTCCTCTTTCGACAGCATCGTCAACGGTGGCGATGCCGC
GAAAGAACACCTTGCTGCTGGC---------AGCACGGCGGTGGCAGTTGCTCACGTTGAGGCGAAGACGCTTATTACCG
CACAGCCTGCTGATATCGCCGGTCCCAGCGAGGCGGCGATGGAGAACCCCA---------AAGGCCCAAGCCGGTGCAGC
ACCTGCAGAAAGAGGGTTGGGCTGACCGGATTCAACTGCCGGTGCGGGAACTTGTACTGCGCGACGCACCGTTACTCGGA
CAAGCACGAGTGCAAGTTTGACTACCGCGCCGCGGCCATGGACGCCATCGCCAAGGCCAACCCGGTGGTGAAGGCGGAGA
AGCTCGACAAGATCTAG---------------------------------------------------------------
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>chr7D_1_TraesCS7D01G397700
CTCCCCTCGCCTCCTCGTCCTCCCCCTCCTAGGGTTAGTACCCCTACCCTCCCCCCCGGATTCCGCCACGGGTCGCCCTC
TCCCCCGGATCCGTCTCCAGATTTAGGGCTCCGGCTCGGCCGATCCGGGCTCGTTTCCCCCCATAACTTTTCGTCGCTGA
TGATTTTTGTTGGGTCTCTCTGCAGGGATCGCCGGAGAGGAATCGCGACGAGGGCTTCCTCCTATCAGGTTCGTGGCTCG
GGGACCCTCTGTTCCCGGTGACAATCATCTGTCTTTCTTATGACGTTCTGTGGTAGCCTGCGTGCCTGTATTTCTCCTGG
TCAAAAGTCCTGATTTTATCTGTGGCCGTTGATTCCTCCGGCCGCCATAGAAGCCGCCGGCCCGCTCCGATTTGTTGGTC
TGCTGTCCAATTCTGTAGAACGGCGACGAGCCGTGGCCAAATTCGGCGCTCCGATGTGTAGTAGTAAAGGCGGCCGGCCG
G---CCTCCTTTACACGTATCCGTCCGGTGTGTTCGCTGCGGCACCCGGTTGTTGATGCGGCCGCTTTCGCAAAAGTTAG
TGCGCGGATACGGTTTGCTACTTTACGGATTTGTTGCCGCTGTTGCGTAAAGCGTCGTAAAGTCGGGGCCTTTCTTTAGA
ATTAATTTCCCCTGCCCTGC-----TCTGCTCTGATGCCGGTAGGTGATTAGGCCGCTGTTGGCTAATTATAAGGCAGGC
AGGCTGCATCGTTTAGTGGTAGTACCTTCAGCTCGGTGTTTTGACCAAGCAGCCACCACTATCCTTTTGTAAGATAAGAT
GCTTTGCAGAGCAACTTGCTTTACCACTTACCAGAGTTGGATTCAGTAGGCCAAAACGTGTATGTGAAGATTATACCATG
TTCATCTGTAAATTGCCAATACTGCAGCGATTGTCTGAAATACAGTTTGTGCCTGTGCTGTTTATAATA-ACCCTTGTCA
AGTGTTTGTCTTGACCGTGTTGTGTCTGATTTCCAGTTAAATCAAAGCCATGGAGCACAAGGAGACCGGCTGCCAGTCTC
GGGAGGGTCCCATCCTTTGCGTCAATAACTGCGGATTCTTTGGCAGTGCGGCGACCATGAACATGTGCTCCAAGTGCCAC
AAGGAGATGGCGATGAAGCAGGAGCAGGCCAAGCTGGCTGCCTCCTCTTTCGACAGCATCGTCAACGGTGGCGATGCCGC
GAAAGAACACCTTGCTGCTGGC---------AGCACGGCGGTGGCAGTTGCTCACGTTGAGGCGAAGACGCTTATTACCG
CACAGCCTGCTGATATCGCCGGTCCCAGCGAGGCGGCGATGGAGAACCCCA---------AAGGCCCAAGCCGGTGCAGC
ACCTGCAGAAAGAGGGTTGGGCTGACCGGATTCAACTGCCGGTGCGGGAACTTGTACTGCGCGACGCACCGTTACTCGGA
CAAGCACGAGTGCAAGTTTGACTACCGCGCCGCGGCCATGGACGCCATCGCCAAGGCCAACCCGGTGGTGAAGGCGGAGA
AGCTCGACAAGATCTAGGAAGGGGCCTCCCTACGGTCGGCAGAACATAAGGTCCCAAATCAAATCTGCGCTACCTCGTCA
TCGTGCGTCTTTGCTGCATTATCCTTTCATCATGTTGGCTTCTGCAATCCTAGTTGTTG---GGCAATCGTGATGCATGG
CACACGCGCCACGGCGGCAGCCCCAGGTCCGAACGGTCTCCTTGTTGGCTATGTTGTGTAAGCTTTATTTATGGTCGTCT
CTCTGCGCGGCGGAACGGTAACGGTATTGTGGCTTTCGCATTTTGGCTAGCACTCTGTAATGTACTGCTCTTTCCTCCTG
AT----GTTTGTCTGTCTGTCTTACAGTCGCAACCGGTAATGGTATCGAGTAAGCGTCGTCGTCTGTTATTATGGTAC--
CCATGGTCATTCGCCCTTGTCAGTAGTTTCTTTCTTCCTGATGATAGTCAGACCAGTTGGCCCCTGAGAAAATTTACATC
ACACCTG-----TGCAGCTGGGCTATCTCCACCATAAGATAGAAGTTCAGTGTCAGGTGAGATGTTGGTGGAATTCTTCT
GTGAGGTTGGTTGTGAGATGGTGTCTGATATTATCTGGAGAATTCTGGCATGTCATGCTCGTCTTGTGTAGGAGCTTTT-
GGCTGGCTAGGTTGGAACACGGAACCAGGACCAAATGCAGTGGCGGCGGTCTGCGTTTGGCCGCTGGGATGGGTTTCTAG
GCGCAGTCGTCCGCTGCGTCGTCTTTGCCCGTTTGGCTTCTACGATCATGGTCTGCATTCTGCCAAGAATTTCTTGCCTA
GATTTCTACTGCTCTATGCGCATTGTTTTCCGTTCTCCGTTGGCGGCACGGTCTCTCTCTCTCTCTCTTGCCCTCACTCT
TGGATCTGCCATTGAACGTTTCGACGGGCTCATCGCTGTCACCAGCCCGTACCACTT-G-GTCTCTTAAATTA------T
TTCTGGAATTCTGGTGAAGCTTCCCTGAGATCAGACTAT-TTTTTTTCGTCTGCCAAAACTTCATTCGCAGAATCAGAAG
A
>chr7B_138
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---------------------------------------------------------CCCCCATAACTTTTCGTCGCTGA
TGATTTTTGTTGGGTCTCTCTGCAGGGATCGCCGGAGAGGAATCGCGACGAGGGCTTCCTCCTATCAGGTTCGTGGCTCG
GCGACCCTCTGTTCCCGGTGATAATCATCTGTCTTTCTTATGACGTTCTGTGGTAGCCTGCGTGCCTGTATTTCTCCTGG
TCAAAAGTCCTGATTTTATCTGCGGCCGTTGATTCCTCCGTCCGCCGTAGAAGCCGCCGGCCGGCACCGATTTATTCCCC
CGACGTTCAAGTCCGCAGAACGGCGGCGAGCCGTTGCCGAATTCGGCGCTCCGA--TGTACTAGTAAAGGCGGCCGGCCT
G---CCT---TTACACGTATCCGTCCGGTGTGTTTGCTCCAGCGCCCGGTTGTTGATGCGGCCGCTTTCGCAAAAGTTAG
TGCGCGGATACGGTTTGCTACTTTACGGATTTGTTGCCGCTGTTGCGTAAAGCGTCGTAAAGTCGGGGCCTTTCTTTAGA
ATTAATTTCCCCTGCTATGC-----TCTGCTCTGATGCCGGTAGGTGATTAGGCCGCTGTTGGCTAATTATAAGGCAGGC
AGGCTGCATCGTTTAGTGGTAGTACCTTCAGTTCGGTGTTTTGACCAAGCAGCCACCACTATCCTTTTGTAAGATAAGAT
GCTTTGTAGAGCAACTAACGTACTTTAGT---AGATTTGGATTCAGTAGGCCAAAACGTGTCTGTGAAGATTATACTTTG
TTCATCTGTAAATTGCCAACTTTGCAGTGATCTTCTGAAATACAATTTGTGCCTGTGCTGTCTATAATA-GCCCATGTGA
AGTGTTTGTCTTGACCGTGTTGCGTCTGATTTCCAGTTAAATCAAAGCCATGGAGCACAAGGAGACCGGCTGCCAGTCTC
GGGAGGGCCCCATCCTTTGCGTCAATAATTGTGGCTTCTTCGGCAGCGCGGCGACCATGAACATGTGCTCCAAGTGCCAC
AAGGAGATGGCGATGAAGCAGGAGCAGGCAAAGCTGGCCGCCTCCTCTTTCGACAGCATCGTCAACGGTGGCGATGCCGC
GAAAGAACATCTTGCTGCTGGC---------AGCACGGCGGTGGCAGTTGCTCACGTTGAGGCGAAGACGCTTATTACCG
CACAGCCTGCTGATATCGCTGGTCCAAGCGAGGGGGCGATGGAGAACCCCA---------AAGGCCCAAGCCGGTGCAGC
ACCTGCAGAAAGAGGGTCGGGCTGACCGGATTCAACTGCCGGTGTGGGAACCTGTACTGCGCAACGCACCGTTACTCGGA
CAAGCACGAGTGCAAGTTTGACTACCGCGCCGCGGCCATGGACGCCATCGCCAAGGCCAACCCAGTGGTGAAGGCGGAGA
AGCTTGACAAGATCTAGGAAGGGTCCCCCCTACGGTCGGCAGAACATAAGGTCCCAAATCAAATCTGCGCTACCTCGTCA
TCGTGCGTC-TTGCTGCATTATCCTTTCATCATGTTGGCTTCTGCAATCTTAGTTGTTG---GGCAATCGTGATGCATGG
CACACGCGCCTCGGCGGCAGCCCCAGGTCCGAACGGTCTCCTTGTTGGCTATGTTGTGTAAGCTTTATTTATGGTCGTCT
CTCTGCGCGGCGGAACGGGAACGGTATTGTGGCTTTCGCATTTTGGCTAGCACTCTGTAATGTACTGCTGTTTCCTCCCG
GT----GTCTGTCTGTCTGTCTTACAGTCGCAACCGGTAATGGTATCGAGTAAGCGTCGTCGTCTGTTATTATGGTAC--
CCATGGTGATCCCCCCTTGTCAATAGTTCCTGTCTTCCTGATCT---TCAGAGCAGTTAGCCCCTGAGAAAATTTACATC
ACACCTGACCTGTGCAGCTGTGCTATCTCCACCAGAAGATAGAAGTTCAGTGTCAGGTGAGATGTTGGTGGAATTCTGCT
GTGAGGTTGGTTGTGAGACTGTGTCTGTTATTATCTGGAGAATTCTTTCATGTCATGCTCGTCTTGTGTAGGAGCTTTTT
GGCTGGCTAGGTTGGAACACGCAACCAGGACCAAATGCAGTGGTGGCGGCCTGCGTTTGGCCGCTGGGATGGGTTTCTAG
GCGCAGTCGTCCGCTGCGTCGTCTTTGCCCGTTTGGCTTCTACGATCACGCTCTGCATTCTACCAAGAATTTCTTGCCTA
GATT-CTAGTGCCCTATGCGCATAGTTTTTCGTTCTCCGTTGGCGGCACGGTC----TCTCTCTCTCTTGCTCTCGCTCT
TGGATCTGCCATTGAACGTTTCGACGGGCTCATCGCTGTCACCAGTCCGTGCCACTCGG-GTCTCTTAAATTTACATTGT
TTCTGGAACTCTGGTGAAGCTTCCCTGGGATCAGACTATTTTTTTTCCGTCTGCCAAAACTTCATTCGCAGAACCAGAAG
A
>chr7A_145
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----------------------------------------------------------------AACTTTTCGTC--TGA
TGATTTTTGTTGGGTCTCTCTGCAGGGATCGCCGGAGAGGAATCGCGACGAGGGCTTCCTCCTATCAGGTTCGTGGCCCG
GCGACCCTCTTTTCCCGGTGACAAACATCTGTTTTTCTTAGCACGTTCTGTGGTAGCCCGTGTGCCTTTATTTCTCCCGG
TCAAAAGTCCTGATTTTATCTGTGGCCGTTGATTCCTCCGGCCGCCGTAGAAGCCGCCGGCCCGCTCCGATTTGTTCTCC
CGGCGTCCAATTCCGCAGAACGGCGACGAGCCGTTGCCTAATTCGGCGCTCCGG--TGTAGTAGTAAAGGCGGCCGGCCG
GCCTCCT---TTACACGTATCCGCCCGGTGTGTTCGCTGCGGCAGCCGGTTGTTGATGCGGCCGCTTTCGCAAAAGTTAG
TGCGCGGATACGGTTTGCTACTTTACGGATTTGTTGCCGCTGTTGCGTAAAGCGTCGTAAAGTCGGGGCCTTTCTTTAGA
ATTAATTTCCCCTGCTATACTCTGATCTGCTCTGATGCAGGTAGGTGATTAGGCCGCTGTTGGCTAGTTATAAGGCAGGC
AGGCTGCATCGTTTAGTGGTAGTACCTTCAGTTCGGTGTTTTGACCAAGCAGCCACCACTACCCTTTTGTAAGATAAGAT
GCTTTGTCGAGCAACTAACGTACTTTAGT---AGATTTGGATTCAGTAGGCCAAAACGTGAC--TGAAGATTATACCATG
TTCATCTGTAAATTGCCAACTCCGCAGTGATAGTCTGAAATACAATTTGTGCCTGTGCTGTGAAGATTATACCCTTGTGA
AGTGTTTGTCTTGACCGTGTTGTGTCTGATTTGCAGTTAAATCAAAGTCATGGAGCACAAGGAGACCGGCTGCCAGTCTC
GTGAGGGCCCCATCCTTTGCGTCAATAACTGCGGCTTCTTCGGCAGTGCGGCGACCATGAACATGTGCTCCAAGTGCCAC
AAGGAGATGGCGATGAAGCAGGAGCAGGCCAAGCTGGCCGCCTCCTCTTTTGACAGCATCGTCAACGGTGGTGATGCCGC
GAAAGAACATCTTGCTGCTGGC---------AACACGGCGGTGGCAGTTGCTCACGTAGAGGCGAAGACGCTTATTACCG
CACAGCCTGCTGATATCGCCGGTCCCAGCGAGGCGGCGATGGAGAACCCCA---------AAGGCCCAAGCCGGTGCAGC
ACCTGCAGAAAGAGGGTCGGGCTGACCGGATTCAACTGCCGGTGCGGGAACCTCTACTGCGCGACGCACCGTTACTCGGA
CAAGCATGAGTGCAAGTTTGACTACCGCGCCGCGGCCATGGACGCCATCGCCAAGGCCAACCCGGTGGTGAAGGCGGAGA
AGCTCGACAAGATCTAGGAAGGG-CCCCCCTACGGTCGGCAGAACATAAGGTCCCAAATCAAATCTGCGCTACCTCGTCA
TCGTGCGTCTTTGCTGCATTATCCTTTCATCATGTTGGCTTCTGCAATCCTAGTTGTTGTTGGGCAATCGTGATGCACGG
CACACGCGCCTCGGCGGCAGCCCCAGGTCCGAACGGTCTCCTTGTTGGCTATGTTGTGTAAGCTTTATTTATGGTCGTCT
CTCTGCGCGGCGGAACGGTAACGGTATTGTGGCTTTCGCATTTTGGCTAGCACTCTGTAATGTACTCCTGTTTCCTCCTG
GTGTCCGTCTGTCTGTCTGTCTTACAGTCGCAACCGGTAATGGTATCGAGTAAGCGTCGTCGTCTGTTATTATGGTATAT
CCATGGTCTTTCCCCCTTGTCAATAGTTCCTGTGTTCCTGATCT---TCAGGCCAGTTAGCCCCTGAGAAAATTTACATC
ACACCTG-----TGCAGCTGGGCTATCTCCACCGGAAGATAGAAGTTCAGTGTCTGGTGAGATCTTGGTGGAATTCTGCT
GTGAGGTTGGTTGTGAGATGGTGTCTGATATTATCTGGGGAATTCTGGCATGTCATGCTCGTCTTGTGTGGGAGCTTTG-
GGCTGGCTGGGTTGGAACACGCAACCAGGACGAAATGCAGTGGTGGCGCTCTGCGTTTGGCCGCTGGGATGGGTTTCTAG
CCGCAGTCGTCCGCTGCGTCGTCTTTGCCCGTTTGGCTTCTACGATCATGCTCCCCATTCTACCAAGAATTTCTTGCCTA
GATT-CTACTGCTCTATGCGCATAGTTTTTCGTTCTCCGTTGGCGGCACGGTC--------TCTCTCTTGCTCTCGCTCT
TGGATCTGCCATTGAATTTTTCGACGGGCTCATCGCTGTCACCAACCCGTACCACTT-GAGTTTCTTAAATTTACAGGGT
TTCTGGAACTCTGGTGA-----CCCTGAGATCAGACTATTTTTTTTTCGTCTGCCAAAACTTCATTCGCAGAATCAGAAG
A
>chr6D_981
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-----------------------------TTTACAGTTATTCAAG----ATGGAACACAAGGAGGCGGGTTGCCAGCAGC
CGGAGGGCCCAATCCTATGTGTTAATAACTGTGGCTTCTTTGGCAGCGCCGCGACCATGAACATGTGCTCCAAGTGCCAC
AAGGAGATGGTCATGAAGGAGGAGCAGGCCAAGCTGGCTGCCTCCTCCTTCGATAGCATCGTCAACGGTGGCGATGGTGG
GAAAGCACCTGTTGTTGCGGCTGTGGCCGCGAGCGCAGAGGTGGCGGTTGCTCAAGTTGACGTGAAGGCGCTTGTTGTGC
AGCCTGCTGCTGATGTTGCAGGCACCAGCGAAGCTGTTGCCGTGAGCCCCAAGAGGAAGGAGGGGCCGAATCGGTGCTCA
ACTTGCAGGAAGAGGGTTGGGCTGACGGGATTCAACTGCCGATGCGGTAACATGTACTGTTCACTGCATCGCTATTCCGA
CAAGCATGACTGCCAGTTCGACTACCGGACTGCAGCTAGGGATGCCATCGCCAAGGCCAACCCGGTGGTGAAGGCAGAGA
AGCTCGACAAGATTTAGG--------------------------------------------------------------
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>chr6B_1001
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-------------------------------------------------ATGGAACACAAGGAGGCGGGTTGCCAGCAGC
CGGAGGGCCCAATCCTATGCGTTAATAACTGTGGCTTCTTTGGCAGCGCCGCGACCATGAACATGTGCTCCAAGTGCCAC
AAGGAGATGGTCATGAAGGAGGAGCAGGCCAAGCTGGCTGCCTCCTCCTTCGATAGCATCGTCAACGGTGGCGATGGTGG
GAAAGCACCTGTTGTTGCGGCTGTTGCTGCGAGCGCGGAGGTGGCGGTTGCTCAAGTTGACGTGAAGGCGCTCGTTGTGC
AGCCTGCTGCTGATGTTGCAGGCACCAGCGAAGCTGTTGCCGTGAGCCCCAAGAGGAAGGAGGGGCCCAATCGGTGCTCA
ACTTGCAGGAAGAGGGTTGGGCTGACGGGATTCAACTGCCGATGTGGTAACATGTACTGTTCACTGCATCGCTATTCCGA
CAAGCATGACTGCCAGTTCGACTACCGGACTGCAGCTAGGGATGCCATCGCCAAGGCCAACCCGGTGGTGAAGGCAGAGA
AGCTCGACAAGATTTAGG--------------------------------------------------------------
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>chr6A_1001
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-------------------------------------------------ATGGAACACAAGGAGGCGGGTTGCCAGCAGC
CGGAGGGCCCAATCCTATGCGTTAATAACTGTGGCTTCTTTGGCAGTGCGGCGACCATGAACATGTGCTCCAAGTGCCAC
AAGGAGATGGTCATGAAGCAGGAACAGGCCAAGCTGGCTGCCTCCTCCTTCGATAGCATCGTCAACGGTGGCGACGGTGG
GAAAGCACCTGTTGTTGCGGCTGTAGCCGCGAGCGCAGAGGTGGTGGTTGCTCAAGTTGACGTGAAGGCGCTCGTTGTGC
AGCCTGCTGCTGATGTTGCAGGCACCAGCGAAGCTGTTGCCGTGAGCCCCAAGAGGAAGGAGGGGCCGAATCGGTGCTCA
ACTTGCAGGAAGAGGGTTGGGCTGACGGGATTCAACTGCCGCTGCGGTAACATGTACTGTTCGCTGCATCGCTATTCCGA
CAAGCATGACTGCCAGTTCGACTACCGGACTGCAGCTAGGGATGCCATCGCCAAGGCCAACCCAGTGGTGAAGGCAGAGA
AGCTCGACAAGATTTAGG--------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
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-S------------------------------------------------------------------------------
----------------------------------------------S-----------------------------SSS-
S-SS---------S-S------------------S---S---------------SS------------------------
-------SSS----------------------------------------------------------------------
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---------------SS---------------------------------------------------------------
-------------------------------S------------------------------------------------
------S---------SS-S-SSSSSSS-SSS---S-------------------------S------------------
-------------------SS------S---S------------S----------------S----------------S-
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-------S--------------------------S---------------------------------------------
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---------S----------------------------------------------------------------------
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---------------------------------------------------S----------------------------
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-----------------------S--S-----------------------------------------------------
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----------S---------------------------------------------------------------------
---------------------------------------------------------------------S----------
S-------S-----------------------------------------------------------------------
------------S---------S-----S--S----------SSSSS-----------S---------------------
----------------------------------S------------------------------------------S--
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---------------------S---------------------S------------------------------------
--------------------------------------------------S----------S------------------
----S------------------S-----S-----------------------SSSS--------------S---S----
------------------------------------------------------------------------S-------
--------S-----------------------------------------------------------------------
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>forward_403
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---------------------------------------------------------------GCTCCGATTTGTTGGTC
TGC-----------------------------------------------------------------------------
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>reverse_2392
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-----------------------------------------------------------------------CCTCACTCT
TGGATCTGCCA---------------------------------------------------------------------
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