Multiple sequence alignment - TraesCS7D01G368400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G368400 chr7D 100.000 2795 0 0 1 2795 477200092 477202886 0.000000e+00 5162
1 TraesCS7D01G368400 chr7D 90.278 144 10 3 2180 2321 477210335 477210476 4.750000e-43 185
2 TraesCS7D01G368400 chr7D 95.890 73 2 1 2129 2201 477210225 477210296 1.760000e-22 117
3 TraesCS7D01G368400 chr7B 92.524 1565 59 22 680 2201 501679156 501680705 0.000000e+00 2189
4 TraesCS7D01G368400 chr7B 94.322 634 29 5 1 627 501678157 501678790 0.000000e+00 965
5 TraesCS7D01G368400 chr7B 94.444 324 15 2 2472 2795 700862056 700861736 1.930000e-136 496
6 TraesCS7D01G368400 chr7B 91.304 322 27 1 2473 2794 95002208 95002528 3.310000e-119 438
7 TraesCS7D01G368400 chr7A 89.439 1231 90 27 743 1951 518749382 518748170 0.000000e+00 1517
8 TraesCS7D01G368400 chr7A 85.973 221 21 9 2247 2464 518747887 518747674 7.790000e-56 228
9 TraesCS7D01G368400 chr7A 91.195 159 11 3 2040 2196 518748118 518747961 2.180000e-51 213
10 TraesCS7D01G368400 chr4D 97.866 328 5 2 2468 2795 64623990 64624315 1.450000e-157 566
11 TraesCS7D01G368400 chr4D 97.531 324 7 1 2472 2795 12272806 12273128 1.130000e-153 553
12 TraesCS7D01G368400 chr2D 96.914 324 9 1 2472 2795 537305144 537304822 2.450000e-150 542
13 TraesCS7D01G368400 chr4A 93.846 325 19 1 2471 2795 578548509 578548832 3.240000e-134 488
14 TraesCS7D01G368400 chr2B 92.945 326 23 0 2470 2795 645488084 645488409 2.520000e-130 475
15 TraesCS7D01G368400 chr5A 92.661 327 24 0 2469 2795 631725016 631725342 3.260000e-129 472
16 TraesCS7D01G368400 chr1A 92.025 326 24 2 2470 2795 552837402 552837079 9.120000e-125 457


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G368400 chr7D 477200092 477202886 2794 False 5162.000000 5162 100.000 1 2795 1 chr7D.!!$F1 2794
1 TraesCS7D01G368400 chr7B 501678157 501680705 2548 False 1577.000000 2189 93.423 1 2201 2 chr7B.!!$F2 2200
2 TraesCS7D01G368400 chr7A 518747674 518749382 1708 True 652.666667 1517 88.869 743 2464 3 chr7A.!!$R1 1721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 1001 0.036105 ATCGCCTGCACAGAATGACA 60.036 50.0 0.0 0.0 39.69 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2388 0.110486 AGCCTGTCAACCGGTTCAAT 59.89 50.0 19.24 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.907885 AGCACTTTCTTCTCTTTGTTCTTTATT 58.092 29.630 0.00 0.00 0.00 1.40
38 39 9.175060 GCACTTTCTTCTCTTTGTTCTTTATTC 57.825 33.333 0.00 0.00 0.00 1.75
91 94 8.993404 AATAACCCTCTACTTTAGACGTCTAT 57.007 34.615 25.17 13.61 0.00 1.98
96 99 6.650390 CCCTCTACTTTAGACGTCTATCTACC 59.350 46.154 25.17 0.00 30.75 3.18
105 108 4.691685 AGACGTCTATCTACCTAGCATTCG 59.308 45.833 18.46 0.00 0.00 3.34
214 218 7.701078 TCCTGATAAGAGTCTTCGTTATTTTCG 59.299 37.037 9.12 0.00 0.00 3.46
215 219 7.218145 TGATAAGAGTCTTCGTTATTTTCGC 57.782 36.000 9.12 0.00 0.00 4.70
217 221 4.905412 AGAGTCTTCGTTATTTTCGCAC 57.095 40.909 0.00 0.00 0.00 5.34
220 224 4.957971 AGTCTTCGTTATTTTCGCACATG 58.042 39.130 0.00 0.00 0.00 3.21
231 239 1.184431 TCGCACATGCATCCCAAAAT 58.816 45.000 0.00 0.00 42.21 1.82
248 256 0.524862 AATCACGTACTCGGCGAACT 59.475 50.000 12.13 0.95 41.85 3.01
252 260 2.285220 TCACGTACTCGGCGAACTATAC 59.715 50.000 12.13 10.21 41.85 1.47
300 308 2.358247 CCAGTTTGGACGGGTCGG 60.358 66.667 0.00 0.00 40.96 4.79
305 313 0.814812 GTTTGGACGGGTCGGTTTCA 60.815 55.000 0.00 0.00 0.00 2.69
344 352 6.598064 GGCCAACTGTTAGTTATACTCAATGT 59.402 38.462 0.00 0.00 36.03 2.71
375 383 0.589229 CTGTCTCGTACCGTGCGATC 60.589 60.000 12.25 9.23 37.74 3.69
448 456 0.679505 CCTCGACCAAGTCACCTCAA 59.320 55.000 0.00 0.00 32.09 3.02
477 485 0.038166 AACGACATGGATGGCTTGGT 59.962 50.000 0.00 0.00 32.20 3.67
478 486 0.038166 ACGACATGGATGGCTTGGTT 59.962 50.000 0.00 0.00 32.20 3.67
506 514 2.607635 TCGCGTCTCATCCATTTTTAGC 59.392 45.455 5.77 0.00 0.00 3.09
509 517 3.790123 GCGTCTCATCCATTTTTAGCTGC 60.790 47.826 0.00 0.00 0.00 5.25
512 520 1.405105 TCATCCATTTTTAGCTGCCGC 59.595 47.619 0.00 0.00 0.00 6.53
515 523 1.472480 TCCATTTTTAGCTGCCGCTTC 59.528 47.619 8.28 0.00 46.47 3.86
517 525 0.179163 ATTTTTAGCTGCCGCTTCGC 60.179 50.000 8.28 0.00 46.47 4.70
566 574 2.462889 CACAAATGCACCATAATCGGC 58.537 47.619 0.00 0.00 0.00 5.54
627 635 6.878923 CCTGATGTAATGTGTCCTCTTTTACA 59.121 38.462 0.00 0.00 0.00 2.41
628 636 7.554118 CCTGATGTAATGTGTCCTCTTTTACAT 59.446 37.037 6.37 6.37 35.43 2.29
631 639 6.774673 TGTAATGTGTCCTCTTTTACATGGA 58.225 36.000 0.00 0.00 34.28 3.41
632 640 7.227873 TGTAATGTGTCCTCTTTTACATGGAA 58.772 34.615 0.00 0.00 34.28 3.53
636 644 3.913799 TGTCCTCTTTTACATGGAAGGGA 59.086 43.478 0.00 5.09 0.00 4.20
637 645 4.352595 TGTCCTCTTTTACATGGAAGGGAA 59.647 41.667 0.00 0.00 29.84 3.97
638 646 5.163034 TGTCCTCTTTTACATGGAAGGGAAA 60.163 40.000 0.00 0.98 29.84 3.13
639 647 5.952347 GTCCTCTTTTACATGGAAGGGAAAT 59.048 40.000 0.00 0.00 29.84 2.17
640 648 6.437477 GTCCTCTTTTACATGGAAGGGAAATT 59.563 38.462 0.00 0.00 29.84 1.82
641 649 6.437162 TCCTCTTTTACATGGAAGGGAAATTG 59.563 38.462 0.00 0.00 0.00 2.32
642 650 6.211384 CCTCTTTTACATGGAAGGGAAATTGT 59.789 38.462 0.00 0.00 0.00 2.71
643 651 6.991938 TCTTTTACATGGAAGGGAAATTGTG 58.008 36.000 0.00 0.00 0.00 3.33
644 652 6.553100 TCTTTTACATGGAAGGGAAATTGTGT 59.447 34.615 0.00 0.00 0.00 3.72
659 983 6.183360 GGAAATTGTGTAGATAGCAACTGCAT 60.183 38.462 4.22 0.00 45.16 3.96
662 986 2.219674 GTGTAGATAGCAACTGCATCGC 59.780 50.000 4.22 0.00 45.16 4.58
663 987 1.795286 GTAGATAGCAACTGCATCGCC 59.205 52.381 4.22 0.00 45.16 5.54
676 1000 0.376152 CATCGCCTGCACAGAATGAC 59.624 55.000 0.00 0.00 39.69 3.06
677 1001 0.036105 ATCGCCTGCACAGAATGACA 60.036 50.000 0.00 0.00 39.69 3.58
678 1002 0.950555 TCGCCTGCACAGAATGACAC 60.951 55.000 0.00 0.00 39.69 3.67
686 1010 0.731514 ACAGAATGACACGTACGCCG 60.732 55.000 16.72 9.60 39.69 6.46
709 1033 0.802994 CCAGCGTACGAAATACCGCA 60.803 55.000 21.65 0.00 36.43 5.69
726 1050 1.373570 GCAGAGAATTTCCGACCAGG 58.626 55.000 0.00 0.00 42.97 4.45
849 1187 0.309302 TGCACCGTGTAATTGCACAC 59.691 50.000 23.74 13.32 41.29 3.82
889 1234 2.477176 CGCTCGGCTCTGCTAGACT 61.477 63.158 0.00 0.00 0.00 3.24
890 1235 1.160946 CGCTCGGCTCTGCTAGACTA 61.161 60.000 0.00 0.00 0.00 2.59
891 1236 0.591170 GCTCGGCTCTGCTAGACTAG 59.409 60.000 5.03 5.03 0.00 2.57
893 1238 1.871039 CTCGGCTCTGCTAGACTAGAC 59.129 57.143 13.91 5.46 0.00 2.59
894 1239 0.584396 CGGCTCTGCTAGACTAGACG 59.416 60.000 13.91 0.00 33.59 4.18
925 1270 5.407502 GTTTTGCATATAAAAACCTCGCCT 58.592 37.500 12.02 0.00 40.19 5.52
1083 1443 3.934391 CTGGTTCCACCGCCTCGTC 62.934 68.421 0.00 0.00 42.58 4.20
1659 2019 1.139095 GAGGAGGCCGTACTTGTCG 59.861 63.158 0.00 0.00 0.00 4.35
1681 2041 2.045242 CGTGGGAGGACGAGGAGA 60.045 66.667 0.00 0.00 42.10 3.71
1897 2266 1.540707 TGCATGCGCATCTTTTCAAGA 59.459 42.857 22.51 0.00 45.36 3.02
1902 2271 5.116680 GCATGCGCATCTTTTCAAGATATTC 59.883 40.000 22.51 0.00 46.20 1.75
1913 2282 4.000331 TCAAGATATTCTAGCAGCAGCC 58.000 45.455 0.00 0.00 43.56 4.85
1935 2304 3.302555 TGCGTTAGTTTAGTCACGACAG 58.697 45.455 0.00 0.00 34.49 3.51
1952 2321 7.760750 CACGACAGTGTAAAATGTATTCAAC 57.239 36.000 0.00 0.00 43.15 3.18
1982 2351 9.773328 CAAATTCACGAACATGTAACTGAATAT 57.227 29.630 18.22 10.42 30.10 1.28
2003 2372 1.068127 AGGCTCTTGCAAGCAACAAAG 59.932 47.619 21.99 13.31 44.35 2.77
2019 2388 7.725251 AGCAACAAAGAGGAAATGTGAAAATA 58.275 30.769 0.00 0.00 0.00 1.40
2028 2412 6.630071 AGGAAATGTGAAAATATTGAACCGG 58.370 36.000 0.00 0.00 0.00 5.28
2057 2441 6.262496 ACAGGCTGATCTGATATCATTGTTTG 59.738 38.462 23.66 1.30 38.11 2.93
2060 2444 5.099484 TGATCTGATATCATTGTTTGCGC 57.901 39.130 5.72 0.00 0.00 6.09
2125 2509 6.320672 AGAATTCTTGCATAATTCCCTGTGAG 59.679 38.462 22.13 0.30 41.99 3.51
2197 2583 1.928595 GCCGTTGATTTGTGGAAACCG 60.929 52.381 0.00 0.00 0.00 4.44
2198 2584 1.604755 CCGTTGATTTGTGGAAACCGA 59.395 47.619 0.00 0.00 0.00 4.69
2200 2586 2.350388 CGTTGATTTGTGGAAACCGAGG 60.350 50.000 0.00 0.00 0.00 4.63
2202 2588 3.216187 TGATTTGTGGAAACCGAGGAA 57.784 42.857 0.00 0.00 0.00 3.36
2203 2589 3.556999 TGATTTGTGGAAACCGAGGAAA 58.443 40.909 0.00 0.00 0.00 3.13
2204 2590 4.148838 TGATTTGTGGAAACCGAGGAAAT 58.851 39.130 0.00 0.00 0.00 2.17
2205 2591 5.317808 TGATTTGTGGAAACCGAGGAAATA 58.682 37.500 0.00 0.00 0.00 1.40
2219 2647 5.922544 CCGAGGAAATAAAATGATTCCATGC 59.077 40.000 6.55 0.00 44.08 4.06
2225 2653 3.814005 AAAATGATTCCATGCTGCCTC 57.186 42.857 0.00 0.00 32.36 4.70
2227 2655 0.178970 ATGATTCCATGCTGCCTCCC 60.179 55.000 0.00 0.00 0.00 4.30
2228 2656 1.228228 GATTCCATGCTGCCTCCCA 59.772 57.895 0.00 0.00 0.00 4.37
2229 2657 0.178970 GATTCCATGCTGCCTCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
2230 2658 0.469331 ATTCCATGCTGCCTCCCATG 60.469 55.000 0.00 0.00 38.78 3.66
2232 2660 2.277737 CATGCTGCCTCCCATGGT 59.722 61.111 11.73 0.00 36.16 3.55
2233 2661 1.380785 CATGCTGCCTCCCATGGTT 60.381 57.895 11.73 0.00 36.16 3.67
2234 2662 0.974010 CATGCTGCCTCCCATGGTTT 60.974 55.000 11.73 0.00 36.16 3.27
2235 2663 0.252375 ATGCTGCCTCCCATGGTTTT 60.252 50.000 11.73 0.00 0.00 2.43
2236 2664 1.186917 TGCTGCCTCCCATGGTTTTG 61.187 55.000 11.73 0.00 0.00 2.44
2237 2665 1.593265 CTGCCTCCCATGGTTTTGC 59.407 57.895 11.73 8.33 0.00 3.68
2238 2666 1.152376 TGCCTCCCATGGTTTTGCA 60.152 52.632 11.73 10.93 0.00 4.08
2239 2667 1.293179 GCCTCCCATGGTTTTGCAC 59.707 57.895 11.73 0.00 0.00 4.57
2240 2668 1.187567 GCCTCCCATGGTTTTGCACT 61.188 55.000 11.73 0.00 0.00 4.40
2241 2669 1.341080 CCTCCCATGGTTTTGCACTT 58.659 50.000 11.73 0.00 0.00 3.16
2242 2670 1.693606 CCTCCCATGGTTTTGCACTTT 59.306 47.619 11.73 0.00 0.00 2.66
2243 2671 2.104622 CCTCCCATGGTTTTGCACTTTT 59.895 45.455 11.73 0.00 0.00 2.27
2244 2672 3.392882 CTCCCATGGTTTTGCACTTTTC 58.607 45.455 11.73 0.00 0.00 2.29
2245 2673 2.768527 TCCCATGGTTTTGCACTTTTCA 59.231 40.909 11.73 0.00 0.00 2.69
2269 2697 2.977178 CCACAAGGCTCTCGCTCT 59.023 61.111 0.00 0.00 36.09 4.09
2270 2698 2.193532 CCACAAGGCTCTCGCTCTA 58.806 57.895 0.00 0.00 36.09 2.43
2273 2701 0.749649 ACAAGGCTCTCGCTCTATGG 59.250 55.000 0.00 0.00 36.09 2.74
2274 2702 1.035923 CAAGGCTCTCGCTCTATGGA 58.964 55.000 0.00 0.00 36.09 3.41
2333 2762 1.226859 CGTGCGGTCGATGGTATGT 60.227 57.895 0.00 0.00 0.00 2.29
2334 2763 0.029700 CGTGCGGTCGATGGTATGTA 59.970 55.000 0.00 0.00 0.00 2.29
2335 2764 1.335597 CGTGCGGTCGATGGTATGTAT 60.336 52.381 0.00 0.00 0.00 2.29
2336 2765 2.325761 GTGCGGTCGATGGTATGTATC 58.674 52.381 0.00 0.00 0.00 2.24
2337 2766 1.957877 TGCGGTCGATGGTATGTATCA 59.042 47.619 0.00 0.00 0.00 2.15
2342 2771 3.684788 GGTCGATGGTATGTATCATTGGC 59.315 47.826 0.00 0.00 33.09 4.52
2347 2776 4.916983 TGGTATGTATCATTGGCTTTGC 57.083 40.909 0.00 0.00 0.00 3.68
2349 2778 5.689835 TGGTATGTATCATTGGCTTTGCTA 58.310 37.500 0.00 0.00 0.00 3.49
2360 2789 8.592105 TCATTGGCTTTGCTAATTTATATTGC 57.408 30.769 0.00 0.00 37.63 3.56
2361 2790 7.381948 TCATTGGCTTTGCTAATTTATATTGCG 59.618 33.333 0.00 0.00 37.63 4.85
2362 2791 6.384258 TGGCTTTGCTAATTTATATTGCGA 57.616 33.333 0.00 0.00 0.00 5.10
2363 2792 6.437928 TGGCTTTGCTAATTTATATTGCGAG 58.562 36.000 0.00 0.00 0.00 5.03
2364 2793 6.039270 TGGCTTTGCTAATTTATATTGCGAGT 59.961 34.615 0.00 0.00 0.00 4.18
2365 2794 6.360681 GGCTTTGCTAATTTATATTGCGAGTG 59.639 38.462 0.00 0.00 0.00 3.51
2366 2795 6.360681 GCTTTGCTAATTTATATTGCGAGTGG 59.639 38.462 0.00 0.00 0.00 4.00
2382 2811 3.120199 CGAGTGGTTAGCACATTTTCCAG 60.120 47.826 17.00 0.00 0.00 3.86
2386 2815 3.181434 TGGTTAGCACATTTTCCAGGAGT 60.181 43.478 0.00 0.00 0.00 3.85
2400 2829 5.086104 TCCAGGAGTGCTAAAGTATTCAC 57.914 43.478 0.00 0.00 0.00 3.18
2409 2838 6.697892 AGTGCTAAAGTATTCACGAGATTAGC 59.302 38.462 14.42 14.42 42.36 3.09
2423 2852 0.790207 ATTAGCGCACGTGAACTGTG 59.210 50.000 22.23 0.00 40.32 3.66
2449 2878 2.743938 CACGCAGCGGATAGTAATTCT 58.256 47.619 21.15 0.00 0.00 2.40
2464 2894 5.491982 AGTAATTCTCTGTTGCTTGTAGGG 58.508 41.667 0.00 0.00 0.00 3.53
2465 2895 4.373156 AATTCTCTGTTGCTTGTAGGGT 57.627 40.909 0.00 0.00 0.00 4.34
2466 2896 3.857157 TTCTCTGTTGCTTGTAGGGTT 57.143 42.857 0.00 0.00 0.00 4.11
2467 2897 3.857157 TCTCTGTTGCTTGTAGGGTTT 57.143 42.857 0.00 0.00 0.00 3.27
2468 2898 4.164843 TCTCTGTTGCTTGTAGGGTTTT 57.835 40.909 0.00 0.00 0.00 2.43
2469 2899 4.532834 TCTCTGTTGCTTGTAGGGTTTTT 58.467 39.130 0.00 0.00 0.00 1.94
2495 2925 5.612725 TTTTTGAGGAATGAAGCCACTTT 57.387 34.783 0.00 0.00 0.00 2.66
2496 2926 6.723298 TTTTTGAGGAATGAAGCCACTTTA 57.277 33.333 0.00 0.00 0.00 1.85
2497 2927 6.916360 TTTTGAGGAATGAAGCCACTTTAT 57.084 33.333 0.00 0.00 0.00 1.40
2498 2928 6.916360 TTTGAGGAATGAAGCCACTTTATT 57.084 33.333 0.00 0.00 33.43 1.40
2499 2929 8.415950 TTTTGAGGAATGAAGCCACTTTATTA 57.584 30.769 0.00 0.00 31.43 0.98
2500 2930 8.415950 TTTGAGGAATGAAGCCACTTTATTAA 57.584 30.769 0.00 0.00 31.43 1.40
2501 2931 8.593945 TTGAGGAATGAAGCCACTTTATTAAT 57.406 30.769 0.00 0.00 31.43 1.40
2502 2932 8.225603 TGAGGAATGAAGCCACTTTATTAATC 57.774 34.615 0.00 1.42 31.43 1.75
2503 2933 7.833682 TGAGGAATGAAGCCACTTTATTAATCA 59.166 33.333 0.00 3.49 31.43 2.57
2504 2934 8.593945 AGGAATGAAGCCACTTTATTAATCAA 57.406 30.769 0.00 0.00 31.43 2.57
2505 2935 9.034800 AGGAATGAAGCCACTTTATTAATCAAA 57.965 29.630 0.00 0.00 31.43 2.69
2506 2936 9.822185 GGAATGAAGCCACTTTATTAATCAAAT 57.178 29.630 0.00 0.00 31.43 2.32
2509 2939 9.822185 ATGAAGCCACTTTATTAATCAAATTCC 57.178 29.630 0.00 0.00 0.00 3.01
2510 2940 8.811017 TGAAGCCACTTTATTAATCAAATTCCA 58.189 29.630 0.00 0.00 0.00 3.53
2511 2941 9.087424 GAAGCCACTTTATTAATCAAATTCCAC 57.913 33.333 0.00 0.00 0.00 4.02
2512 2942 8.133024 AGCCACTTTATTAATCAAATTCCACA 57.867 30.769 0.00 0.00 0.00 4.17
2513 2943 8.253113 AGCCACTTTATTAATCAAATTCCACAG 58.747 33.333 0.00 0.00 0.00 3.66
2514 2944 8.250332 GCCACTTTATTAATCAAATTCCACAGA 58.750 33.333 0.00 0.00 0.00 3.41
2530 2960 4.021102 CACAGAAGGTGGGATACAAACT 57.979 45.455 0.00 0.00 44.04 2.66
2531 2961 3.753272 CACAGAAGGTGGGATACAAACTG 59.247 47.826 0.00 0.00 44.04 3.16
2532 2962 3.244911 ACAGAAGGTGGGATACAAACTGG 60.245 47.826 0.00 0.00 39.74 4.00
2533 2963 3.009033 CAGAAGGTGGGATACAAACTGGA 59.991 47.826 0.00 0.00 39.74 3.86
2534 2964 3.852578 AGAAGGTGGGATACAAACTGGAT 59.147 43.478 0.00 0.00 39.74 3.41
2535 2965 3.933861 AGGTGGGATACAAACTGGATC 57.066 47.619 0.00 0.00 36.98 3.36
2536 2966 3.189606 AGGTGGGATACAAACTGGATCA 58.810 45.455 1.45 0.00 39.50 2.92
2537 2967 3.788142 AGGTGGGATACAAACTGGATCAT 59.212 43.478 1.45 0.00 39.50 2.45
2538 2968 3.885297 GGTGGGATACAAACTGGATCATG 59.115 47.826 1.45 0.00 39.50 3.07
2539 2969 4.526970 GTGGGATACAAACTGGATCATGT 58.473 43.478 1.45 0.00 39.50 3.21
2540 2970 4.336433 GTGGGATACAAACTGGATCATGTG 59.664 45.833 1.45 0.00 39.50 3.21
2541 2971 3.885297 GGGATACAAACTGGATCATGTGG 59.115 47.826 1.45 0.00 39.50 4.17
2542 2972 3.316308 GGATACAAACTGGATCATGTGGC 59.684 47.826 1.45 0.00 39.50 5.01
2543 2973 2.592102 ACAAACTGGATCATGTGGCT 57.408 45.000 0.00 0.00 0.00 4.75
2544 2974 2.165167 ACAAACTGGATCATGTGGCTG 58.835 47.619 0.00 0.00 0.00 4.85
2545 2975 1.475280 CAAACTGGATCATGTGGCTGG 59.525 52.381 0.00 0.00 0.00 4.85
2546 2976 0.682209 AACTGGATCATGTGGCTGGC 60.682 55.000 0.00 0.00 0.00 4.85
2547 2977 1.826921 CTGGATCATGTGGCTGGCC 60.827 63.158 4.43 4.43 0.00 5.36
2548 2978 2.276409 GGATCATGTGGCTGGCCA 59.724 61.111 10.55 10.55 45.02 5.36
2562 2992 4.557942 GCCAAGCCAAACATGACG 57.442 55.556 0.00 0.00 0.00 4.35
2563 2993 1.956043 GCCAAGCCAAACATGACGA 59.044 52.632 0.00 0.00 0.00 4.20
2564 2994 0.387239 GCCAAGCCAAACATGACGAC 60.387 55.000 0.00 0.00 0.00 4.34
2565 2995 0.240945 CCAAGCCAAACATGACGACC 59.759 55.000 0.00 0.00 0.00 4.79
2566 2996 0.240945 CAAGCCAAACATGACGACCC 59.759 55.000 0.00 0.00 0.00 4.46
2567 2997 1.234615 AAGCCAAACATGACGACCCG 61.235 55.000 0.00 0.00 0.00 5.28
2568 2998 2.686816 GCCAAACATGACGACCCGG 61.687 63.158 0.00 0.00 0.00 5.73
2569 2999 1.004320 CCAAACATGACGACCCGGA 60.004 57.895 0.73 0.00 0.00 5.14
2570 3000 1.019278 CCAAACATGACGACCCGGAG 61.019 60.000 0.73 0.00 0.00 4.63
2571 3001 1.375523 AAACATGACGACCCGGAGC 60.376 57.895 0.73 0.00 0.00 4.70
2572 3002 1.827399 AAACATGACGACCCGGAGCT 61.827 55.000 0.73 0.00 0.00 4.09
2573 3003 0.968901 AACATGACGACCCGGAGCTA 60.969 55.000 0.73 0.00 0.00 3.32
2574 3004 1.360551 CATGACGACCCGGAGCTAG 59.639 63.158 0.73 0.00 0.00 3.42
2575 3005 1.828660 ATGACGACCCGGAGCTAGG 60.829 63.158 0.73 0.85 0.00 3.02
2576 3006 2.439883 GACGACCCGGAGCTAGGT 60.440 66.667 0.73 2.28 39.75 3.08
2577 3007 2.036890 ACGACCCGGAGCTAGGTT 59.963 61.111 0.73 0.00 36.17 3.50
2578 3008 1.602327 GACGACCCGGAGCTAGGTTT 61.602 60.000 0.73 0.00 36.17 3.27
2579 3009 1.141234 CGACCCGGAGCTAGGTTTC 59.859 63.158 0.73 1.45 36.17 2.78
2580 3010 1.321074 CGACCCGGAGCTAGGTTTCT 61.321 60.000 0.73 0.00 36.17 2.52
2581 3011 1.772836 GACCCGGAGCTAGGTTTCTA 58.227 55.000 0.73 0.00 36.17 2.10
2582 3012 1.682323 GACCCGGAGCTAGGTTTCTAG 59.318 57.143 0.73 0.00 44.40 2.43
2607 3037 7.746526 CAAATTTTGCTAACCTATGAGCTTC 57.253 36.000 0.00 0.00 39.54 3.86
2608 3038 5.741388 ATTTTGCTAACCTATGAGCTTCG 57.259 39.130 0.00 0.00 39.54 3.79
2609 3039 4.465632 TTTGCTAACCTATGAGCTTCGA 57.534 40.909 0.00 0.00 39.54 3.71
2610 3040 3.438297 TGCTAACCTATGAGCTTCGAC 57.562 47.619 0.00 0.00 39.54 4.20
2611 3041 2.758423 TGCTAACCTATGAGCTTCGACA 59.242 45.455 0.00 0.00 39.54 4.35
2612 3042 3.384789 TGCTAACCTATGAGCTTCGACAT 59.615 43.478 0.00 0.00 39.54 3.06
2613 3043 4.141937 TGCTAACCTATGAGCTTCGACATT 60.142 41.667 0.00 0.00 39.54 2.71
2614 3044 5.068591 TGCTAACCTATGAGCTTCGACATTA 59.931 40.000 0.00 0.00 39.54 1.90
2615 3045 5.983720 GCTAACCTATGAGCTTCGACATTAA 59.016 40.000 0.00 0.00 35.73 1.40
2616 3046 6.074249 GCTAACCTATGAGCTTCGACATTAAC 60.074 42.308 0.00 0.00 35.73 2.01
2617 3047 5.339008 ACCTATGAGCTTCGACATTAACA 57.661 39.130 0.00 0.00 0.00 2.41
2618 3048 5.109903 ACCTATGAGCTTCGACATTAACAC 58.890 41.667 0.00 0.00 0.00 3.32
2619 3049 5.105310 ACCTATGAGCTTCGACATTAACACT 60.105 40.000 0.00 0.00 0.00 3.55
2620 3050 6.096423 ACCTATGAGCTTCGACATTAACACTA 59.904 38.462 0.00 0.00 0.00 2.74
2621 3051 6.418226 CCTATGAGCTTCGACATTAACACTAC 59.582 42.308 0.00 0.00 0.00 2.73
2622 3052 4.163552 TGAGCTTCGACATTAACACTACG 58.836 43.478 0.00 0.00 0.00 3.51
2623 3053 4.083164 TGAGCTTCGACATTAACACTACGA 60.083 41.667 0.00 0.00 0.00 3.43
2624 3054 4.164294 AGCTTCGACATTAACACTACGAC 58.836 43.478 0.00 0.00 0.00 4.34
2625 3055 4.082895 AGCTTCGACATTAACACTACGACT 60.083 41.667 0.00 0.00 0.00 4.18
2626 3056 4.620184 GCTTCGACATTAACACTACGACTT 59.380 41.667 0.00 0.00 0.00 3.01
2627 3057 5.118203 GCTTCGACATTAACACTACGACTTT 59.882 40.000 0.00 0.00 0.00 2.66
2628 3058 6.666918 GCTTCGACATTAACACTACGACTTTC 60.667 42.308 0.00 0.00 0.00 2.62
2629 3059 5.761003 TCGACATTAACACTACGACTTTCA 58.239 37.500 0.00 0.00 0.00 2.69
2630 3060 6.207928 TCGACATTAACACTACGACTTTCAA 58.792 36.000 0.00 0.00 0.00 2.69
2631 3061 6.696583 TCGACATTAACACTACGACTTTCAAA 59.303 34.615 0.00 0.00 0.00 2.69
2632 3062 7.222417 TCGACATTAACACTACGACTTTCAAAA 59.778 33.333 0.00 0.00 0.00 2.44
2633 3063 7.847078 CGACATTAACACTACGACTTTCAAAAA 59.153 33.333 0.00 0.00 0.00 1.94
2634 3064 9.659830 GACATTAACACTACGACTTTCAAAAAT 57.340 29.630 0.00 0.00 0.00 1.82
2664 3094 1.591768 AAAAAGGGGGCCGATCTAGA 58.408 50.000 0.00 0.00 0.00 2.43
2665 3095 1.821088 AAAAGGGGGCCGATCTAGAT 58.179 50.000 4.47 4.47 0.00 1.98
2666 3096 1.821088 AAAGGGGGCCGATCTAGATT 58.179 50.000 6.70 0.00 0.00 2.40
2667 3097 1.821088 AAGGGGGCCGATCTAGATTT 58.179 50.000 6.70 0.00 0.00 2.17
2668 3098 1.821088 AGGGGGCCGATCTAGATTTT 58.179 50.000 6.70 0.00 0.00 1.82
2669 3099 2.986050 AGGGGGCCGATCTAGATTTTA 58.014 47.619 6.70 0.00 0.00 1.52
2670 3100 3.532102 AGGGGGCCGATCTAGATTTTAT 58.468 45.455 6.70 0.00 0.00 1.40
2671 3101 3.519913 AGGGGGCCGATCTAGATTTTATC 59.480 47.826 6.70 0.00 0.00 1.75
2672 3102 3.519913 GGGGGCCGATCTAGATTTTATCT 59.480 47.826 6.70 0.00 43.33 1.98
2673 3103 4.383226 GGGGGCCGATCTAGATTTTATCTC 60.383 50.000 6.70 0.00 40.76 2.75
2674 3104 4.223032 GGGGCCGATCTAGATTTTATCTCA 59.777 45.833 6.70 0.00 40.76 3.27
2675 3105 5.104735 GGGGCCGATCTAGATTTTATCTCAT 60.105 44.000 6.70 0.00 40.76 2.90
2676 3106 5.814705 GGGCCGATCTAGATTTTATCTCATG 59.185 44.000 6.70 0.00 40.76 3.07
2677 3107 6.351371 GGGCCGATCTAGATTTTATCTCATGA 60.351 42.308 6.70 0.00 40.76 3.07
2678 3108 7.099764 GGCCGATCTAGATTTTATCTCATGAA 58.900 38.462 6.70 0.00 40.76 2.57
2679 3109 7.768120 GGCCGATCTAGATTTTATCTCATGAAT 59.232 37.037 6.70 0.00 40.76 2.57
2680 3110 8.602328 GCCGATCTAGATTTTATCTCATGAATG 58.398 37.037 6.70 0.00 40.76 2.67
2681 3111 9.866798 CCGATCTAGATTTTATCTCATGAATGA 57.133 33.333 6.70 0.00 40.76 2.57
2688 3118 8.794553 AGATTTTATCTCATGAATGATTGCTCC 58.205 33.333 3.05 0.00 33.42 4.70
2689 3119 6.549912 TTTATCTCATGAATGATTGCTCCG 57.450 37.500 3.05 0.00 36.02 4.63
2690 3120 3.548745 TCTCATGAATGATTGCTCCGT 57.451 42.857 0.00 0.00 36.02 4.69
2691 3121 3.200483 TCTCATGAATGATTGCTCCGTG 58.800 45.455 0.00 0.00 36.02 4.94
2692 3122 2.289820 CTCATGAATGATTGCTCCGTGG 59.710 50.000 0.00 0.00 36.02 4.94
2693 3123 2.019249 CATGAATGATTGCTCCGTGGT 58.981 47.619 0.00 0.00 0.00 4.16
2694 3124 1.452110 TGAATGATTGCTCCGTGGTG 58.548 50.000 0.00 0.00 0.00 4.17
2695 3125 1.003003 TGAATGATTGCTCCGTGGTGA 59.997 47.619 0.00 0.00 0.00 4.02
2696 3126 1.398390 GAATGATTGCTCCGTGGTGAC 59.602 52.381 0.00 0.00 0.00 3.67
2697 3127 0.392998 ATGATTGCTCCGTGGTGACC 60.393 55.000 0.00 0.00 0.00 4.02
2698 3128 1.003839 GATTGCTCCGTGGTGACCA 60.004 57.895 0.00 0.00 0.00 4.02
2699 3129 0.392998 GATTGCTCCGTGGTGACCAT 60.393 55.000 7.94 0.00 35.28 3.55
2700 3130 0.038166 ATTGCTCCGTGGTGACCATT 59.962 50.000 7.94 0.00 35.28 3.16
2701 3131 0.888736 TTGCTCCGTGGTGACCATTG 60.889 55.000 7.94 3.43 35.28 2.82
2702 3132 2.690778 GCTCCGTGGTGACCATTGC 61.691 63.158 7.94 6.47 35.28 3.56
2703 3133 1.003355 CTCCGTGGTGACCATTGCT 60.003 57.895 7.94 0.00 35.28 3.91
2704 3134 1.300971 CTCCGTGGTGACCATTGCTG 61.301 60.000 7.94 0.00 35.28 4.41
2705 3135 2.562912 CGTGGTGACCATTGCTGC 59.437 61.111 7.94 0.00 35.28 5.25
2706 3136 2.964978 GTGGTGACCATTGCTGCC 59.035 61.111 7.94 0.00 35.28 4.85
2707 3137 2.283101 TGGTGACCATTGCTGCCC 60.283 61.111 0.00 0.00 0.00 5.36
2708 3138 2.036256 GGTGACCATTGCTGCCCT 59.964 61.111 0.00 0.00 0.00 5.19
2709 3139 1.607467 GGTGACCATTGCTGCCCTT 60.607 57.895 0.00 0.00 0.00 3.95
2710 3140 1.598701 GGTGACCATTGCTGCCCTTC 61.599 60.000 0.00 0.00 0.00 3.46
2711 3141 0.895100 GTGACCATTGCTGCCCTTCA 60.895 55.000 0.00 0.00 0.00 3.02
2712 3142 0.040058 TGACCATTGCTGCCCTTCAT 59.960 50.000 0.00 0.00 0.00 2.57
2713 3143 0.458669 GACCATTGCTGCCCTTCATG 59.541 55.000 0.00 0.00 0.00 3.07
2714 3144 0.040058 ACCATTGCTGCCCTTCATGA 59.960 50.000 0.00 0.00 0.00 3.07
2715 3145 1.342674 ACCATTGCTGCCCTTCATGAT 60.343 47.619 0.00 0.00 0.00 2.45
2716 3146 1.068588 CCATTGCTGCCCTTCATGATG 59.931 52.381 0.00 0.00 0.00 3.07
2717 3147 1.754803 CATTGCTGCCCTTCATGATGT 59.245 47.619 0.00 0.00 0.00 3.06
2718 3148 1.466856 TTGCTGCCCTTCATGATGTC 58.533 50.000 0.00 0.00 0.00 3.06
2719 3149 0.622136 TGCTGCCCTTCATGATGTCT 59.378 50.000 0.00 0.00 0.00 3.41
2720 3150 1.005097 TGCTGCCCTTCATGATGTCTT 59.995 47.619 0.00 0.00 0.00 3.01
2721 3151 1.674962 GCTGCCCTTCATGATGTCTTC 59.325 52.381 0.00 0.00 0.00 2.87
2722 3152 2.295885 CTGCCCTTCATGATGTCTTCC 58.704 52.381 0.00 0.00 0.00 3.46
2723 3153 1.634973 TGCCCTTCATGATGTCTTCCA 59.365 47.619 0.00 0.00 0.00 3.53
2724 3154 2.242965 TGCCCTTCATGATGTCTTCCAT 59.757 45.455 0.00 0.00 36.13 3.41
2734 3164 2.189594 TGTCTTCCATCACCTGCTTG 57.810 50.000 0.00 0.00 0.00 4.01
2735 3165 0.807496 GTCTTCCATCACCTGCTTGC 59.193 55.000 0.00 0.00 0.00 4.01
2736 3166 0.401356 TCTTCCATCACCTGCTTGCA 59.599 50.000 0.00 0.00 0.00 4.08
2737 3167 0.809385 CTTCCATCACCTGCTTGCAG 59.191 55.000 15.02 15.02 0.00 4.41
2738 3168 0.111061 TTCCATCACCTGCTTGCAGT 59.889 50.000 19.49 6.83 0.00 4.40
2739 3169 0.321919 TCCATCACCTGCTTGCAGTC 60.322 55.000 19.49 0.00 0.00 3.51
2740 3170 1.642037 CCATCACCTGCTTGCAGTCG 61.642 60.000 19.49 11.00 0.00 4.18
2741 3171 1.376424 ATCACCTGCTTGCAGTCGG 60.376 57.895 19.49 9.40 0.00 4.79
2742 3172 1.830587 ATCACCTGCTTGCAGTCGGA 61.831 55.000 19.49 13.94 0.00 4.55
2743 3173 1.597854 CACCTGCTTGCAGTCGGAA 60.598 57.895 19.49 0.00 0.00 4.30
2744 3174 1.302033 ACCTGCTTGCAGTCGGAAG 60.302 57.895 19.49 7.19 43.08 3.46
2745 3175 1.004560 CCTGCTTGCAGTCGGAAGA 60.005 57.895 19.49 0.00 42.87 2.87
2746 3176 1.018226 CCTGCTTGCAGTCGGAAGAG 61.018 60.000 19.49 0.20 42.87 2.85
2747 3177 0.037882 CTGCTTGCAGTCGGAAGAGA 60.038 55.000 13.89 0.00 42.87 3.10
2748 3178 0.610174 TGCTTGCAGTCGGAAGAGAT 59.390 50.000 0.00 0.00 42.87 2.75
2749 3179 1.005340 GCTTGCAGTCGGAAGAGATG 58.995 55.000 0.00 0.00 42.87 2.90
2750 3180 1.404717 GCTTGCAGTCGGAAGAGATGA 60.405 52.381 0.00 0.00 42.87 2.92
2751 3181 2.741228 GCTTGCAGTCGGAAGAGATGAT 60.741 50.000 0.00 0.00 42.87 2.45
2752 3182 2.591571 TGCAGTCGGAAGAGATGATG 57.408 50.000 0.00 0.00 43.49 3.07
2753 3183 2.102578 TGCAGTCGGAAGAGATGATGA 58.897 47.619 0.00 0.00 43.49 2.92
2754 3184 2.497273 TGCAGTCGGAAGAGATGATGAA 59.503 45.455 0.00 0.00 43.49 2.57
2755 3185 3.133542 TGCAGTCGGAAGAGATGATGAAT 59.866 43.478 0.00 0.00 43.49 2.57
2756 3186 3.740321 GCAGTCGGAAGAGATGATGAATC 59.260 47.826 0.00 0.00 43.49 2.52
2758 3188 5.599732 CAGTCGGAAGAGATGATGAATCTT 58.400 41.667 0.00 0.00 46.12 2.40
2759 3189 6.047870 CAGTCGGAAGAGATGATGAATCTTT 58.952 40.000 0.00 0.00 46.12 2.52
2760 3190 6.018913 CAGTCGGAAGAGATGATGAATCTTTG 60.019 42.308 0.00 0.00 46.12 2.77
2761 3191 5.236047 GTCGGAAGAGATGATGAATCTTTGG 59.764 44.000 0.00 0.00 46.12 3.28
2762 3192 5.129320 TCGGAAGAGATGATGAATCTTTGGA 59.871 40.000 0.00 0.00 46.12 3.53
2763 3193 5.466058 CGGAAGAGATGATGAATCTTTGGAG 59.534 44.000 0.00 0.00 46.12 3.86
2764 3194 6.590068 GGAAGAGATGATGAATCTTTGGAGA 58.410 40.000 0.00 0.00 46.12 3.71
2765 3195 7.225725 GGAAGAGATGATGAATCTTTGGAGAT 58.774 38.462 0.00 0.00 46.12 2.75
2766 3196 7.173562 GGAAGAGATGATGAATCTTTGGAGATG 59.826 40.741 0.00 0.00 46.12 2.90
2767 3197 7.376335 AGAGATGATGAATCTTTGGAGATGA 57.624 36.000 0.00 0.00 46.12 2.92
2768 3198 7.803131 AGAGATGATGAATCTTTGGAGATGAA 58.197 34.615 0.00 0.00 46.12 2.57
2769 3199 7.934665 AGAGATGATGAATCTTTGGAGATGAAG 59.065 37.037 0.00 0.00 46.12 3.02
2770 3200 7.803131 AGATGATGAATCTTTGGAGATGAAGA 58.197 34.615 0.00 0.00 43.52 2.87
2771 3201 8.441572 AGATGATGAATCTTTGGAGATGAAGAT 58.558 33.333 0.00 0.00 43.52 2.40
2772 3202 8.624367 ATGATGAATCTTTGGAGATGAAGATC 57.376 34.615 0.00 0.00 41.78 2.75
2773 3203 7.803131 TGATGAATCTTTGGAGATGAAGATCT 58.197 34.615 0.00 0.00 41.78 2.75
2774 3204 8.272889 TGATGAATCTTTGGAGATGAAGATCTT 58.727 33.333 7.95 7.95 41.78 2.40
2775 3205 8.680039 ATGAATCTTTGGAGATGAAGATCTTC 57.320 34.615 25.68 25.68 41.78 2.87
2790 3220 7.533426 TGAAGATCTTCAGCAAGAAATAAAGC 58.467 34.615 30.05 3.32 43.90 3.51
2791 3221 7.392673 TGAAGATCTTCAGCAAGAAATAAAGCT 59.607 33.333 30.05 0.00 43.90 3.74
2792 3222 7.700022 AGATCTTCAGCAAGAAATAAAGCTT 57.300 32.000 0.00 0.00 42.14 3.74
2793 3223 7.760437 AGATCTTCAGCAAGAAATAAAGCTTC 58.240 34.615 0.00 0.00 42.14 3.86
2794 3224 6.259550 TCTTCAGCAAGAAATAAAGCTTCC 57.740 37.500 0.00 0.00 35.57 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.765915 AAGAACAAAGAGAAGAAAGTGCTT 57.234 33.333 0.00 0.00 0.00 3.91
37 38 6.913170 AGCTATGAGAAATTTCGCAAAAAGA 58.087 32.000 25.22 10.03 40.30 2.52
38 39 6.252228 GGAGCTATGAGAAATTTCGCAAAAAG 59.748 38.462 25.22 21.58 40.30 2.27
91 94 8.865420 ATCTATCTTAACGAATGCTAGGTAGA 57.135 34.615 0.00 0.00 34.19 2.59
122 125 5.104900 AGGGATGTTAAGTGCTCTTTATCGT 60.105 40.000 6.31 0.00 35.36 3.73
127 130 5.358160 GCATAAGGGATGTTAAGTGCTCTTT 59.642 40.000 6.31 0.00 37.90 2.52
130 133 4.455606 AGCATAAGGGATGTTAAGTGCTC 58.544 43.478 0.00 0.00 37.09 4.26
214 218 2.273557 GTGATTTTGGGATGCATGTGC 58.726 47.619 2.46 0.00 42.50 4.57
215 219 2.094597 ACGTGATTTTGGGATGCATGTG 60.095 45.455 2.46 0.00 0.00 3.21
217 221 2.945447 ACGTGATTTTGGGATGCATG 57.055 45.000 2.46 0.00 0.00 4.06
220 224 2.030457 CGAGTACGTGATTTTGGGATGC 59.970 50.000 0.00 0.00 34.56 3.91
231 239 1.372582 ATAGTTCGCCGAGTACGTGA 58.627 50.000 0.00 0.00 37.88 4.35
257 265 1.667236 TCCATCGGAACATGCATCAC 58.333 50.000 0.00 0.00 0.00 3.06
258 266 2.105306 AGATCCATCGGAACATGCATCA 59.895 45.455 0.00 0.00 34.34 3.07
300 308 3.119352 GGCCCATTCTTGTCATCTGAAAC 60.119 47.826 0.00 0.00 0.00 2.78
305 313 2.042162 AGTTGGCCCATTCTTGTCATCT 59.958 45.455 0.00 0.00 0.00 2.90
344 352 4.664267 AGACAGGCCCCAGCTCCA 62.664 66.667 0.00 0.00 39.73 3.86
375 383 0.321671 ACTCGTCCATGTTCCCTGTG 59.678 55.000 0.00 0.00 0.00 3.66
448 456 5.240891 CCATCCATGTCGTTTAGCAGATAT 58.759 41.667 0.00 0.00 0.00 1.63
477 485 0.523546 GATGAGACGCGAGCTCGAAA 60.524 55.000 38.74 16.49 43.02 3.46
478 486 1.062685 GATGAGACGCGAGCTCGAA 59.937 57.895 38.74 16.14 43.02 3.71
512 520 1.363744 GATCCACAGGTGAAGCGAAG 58.636 55.000 0.00 0.00 0.00 3.79
515 523 1.811266 CGGATCCACAGGTGAAGCG 60.811 63.158 13.41 0.00 0.00 4.68
517 525 0.458543 CGACGGATCCACAGGTGAAG 60.459 60.000 13.41 0.00 0.00 3.02
566 574 4.159879 ACTCCCTAACAATAGAGAACACGG 59.840 45.833 0.00 0.00 0.00 4.94
627 635 6.064717 GCTATCTACACAATTTCCCTTCCAT 58.935 40.000 0.00 0.00 0.00 3.41
628 636 5.045213 TGCTATCTACACAATTTCCCTTCCA 60.045 40.000 0.00 0.00 0.00 3.53
631 639 6.375455 CAGTTGCTATCTACACAATTTCCCTT 59.625 38.462 0.00 0.00 0.00 3.95
632 640 5.882557 CAGTTGCTATCTACACAATTTCCCT 59.117 40.000 0.00 0.00 0.00 4.20
636 644 6.457392 CGATGCAGTTGCTATCTACACAATTT 60.457 38.462 5.62 0.00 42.66 1.82
637 645 5.007039 CGATGCAGTTGCTATCTACACAATT 59.993 40.000 5.62 0.00 42.66 2.32
638 646 4.509230 CGATGCAGTTGCTATCTACACAAT 59.491 41.667 5.62 0.00 42.66 2.71
639 647 3.865164 CGATGCAGTTGCTATCTACACAA 59.135 43.478 5.62 0.00 42.66 3.33
640 648 3.447742 CGATGCAGTTGCTATCTACACA 58.552 45.455 5.62 0.00 42.66 3.72
641 649 2.219674 GCGATGCAGTTGCTATCTACAC 59.780 50.000 5.62 0.00 42.66 2.90
642 650 2.473816 GCGATGCAGTTGCTATCTACA 58.526 47.619 5.62 0.00 42.66 2.74
643 651 1.795286 GGCGATGCAGTTGCTATCTAC 59.205 52.381 5.62 3.02 42.66 2.59
644 652 1.688735 AGGCGATGCAGTTGCTATCTA 59.311 47.619 5.62 0.00 42.66 1.98
659 983 0.950555 GTGTCATTCTGTGCAGGCGA 60.951 55.000 0.00 0.00 0.00 5.54
662 986 1.726791 GTACGTGTCATTCTGTGCAGG 59.273 52.381 0.00 0.00 0.00 4.85
663 987 1.386748 CGTACGTGTCATTCTGTGCAG 59.613 52.381 7.22 0.00 0.00 4.41
666 990 0.713883 GGCGTACGTGTCATTCTGTG 59.286 55.000 17.90 0.00 0.00 3.66
667 991 0.731514 CGGCGTACGTGTCATTCTGT 60.732 55.000 17.90 0.00 37.93 3.41
668 992 1.410737 CCGGCGTACGTGTCATTCTG 61.411 60.000 17.90 2.92 42.24 3.02
669 993 1.153901 CCGGCGTACGTGTCATTCT 60.154 57.895 17.90 0.00 42.24 2.40
671 995 2.812178 GCCGGCGTACGTGTCATT 60.812 61.111 12.58 0.00 42.24 2.57
686 1010 0.648958 GTATTTCGTACGCTGGTGCC 59.351 55.000 11.24 0.00 35.36 5.01
693 1017 0.844503 CTCTGCGGTATTTCGTACGC 59.155 55.000 11.24 0.00 33.94 4.42
698 1022 3.302480 CGGAAATTCTCTGCGGTATTTCG 60.302 47.826 16.67 11.79 37.69 3.46
709 1033 0.108138 CGCCTGGTCGGAAATTCTCT 60.108 55.000 0.00 0.00 33.16 3.10
741 1065 3.929389 GACGATCTCGGCTGATGC 58.071 61.111 0.00 0.00 45.57 3.91
749 1073 1.922903 GCATGTGCTGACGATCTCG 59.077 57.895 0.00 0.00 40.89 4.04
776 1105 2.355756 GACTACTTGGCCGTCACGTATA 59.644 50.000 0.00 0.00 31.10 1.47
880 1225 0.466555 AGCCCCGTCTAGTCTAGCAG 60.467 60.000 1.60 0.00 0.00 4.24
889 1234 1.669760 CAAAACGCAGCCCCGTCTA 60.670 57.895 0.00 0.00 41.16 2.59
890 1235 2.978010 CAAAACGCAGCCCCGTCT 60.978 61.111 0.00 0.00 41.16 4.18
891 1236 4.700365 GCAAAACGCAGCCCCGTC 62.700 66.667 0.00 0.00 41.16 4.79
1083 1443 1.677637 GAGGGGAGTAGGCGTTGAGG 61.678 65.000 0.00 0.00 0.00 3.86
1897 2266 2.181954 GCAGGCTGCTGCTAGAATAT 57.818 50.000 31.37 0.00 46.04 1.28
1913 2282 3.302555 TGTCGTGACTAAACTAACGCAG 58.697 45.455 1.23 0.00 36.04 5.18
1952 2321 6.084939 CAGTTACATGTTCGTGAATTTGAACG 59.915 38.462 2.30 8.20 45.75 3.95
1982 2351 1.979855 TTGTTGCTTGCAAGAGCCTA 58.020 45.000 30.39 9.78 42.01 3.93
2003 2372 6.751888 CCGGTTCAATATTTTCACATTTCCTC 59.248 38.462 0.00 0.00 0.00 3.71
2019 2388 0.110486 AGCCTGTCAACCGGTTCAAT 59.890 50.000 19.24 0.00 0.00 2.57
2024 2408 1.194781 AGATCAGCCTGTCAACCGGT 61.195 55.000 0.00 0.00 0.00 5.28
2028 2412 4.953667 TGATATCAGATCAGCCTGTCAAC 58.046 43.478 0.00 0.00 35.71 3.18
2057 2441 2.770587 CTTTCTTGGCACTGACGCGC 62.771 60.000 5.73 0.00 0.00 6.86
2060 2444 0.877071 ATGCTTTCTTGGCACTGACG 59.123 50.000 0.00 0.00 42.69 4.35
2197 2583 6.423001 GCAGCATGGAATCATTTTATTTCCTC 59.577 38.462 0.00 0.00 39.72 3.71
2198 2584 6.285990 GCAGCATGGAATCATTTTATTTCCT 58.714 36.000 0.00 0.00 39.72 3.36
2200 2586 6.285990 AGGCAGCATGGAATCATTTTATTTC 58.714 36.000 0.00 0.00 35.86 2.17
2202 2588 5.221581 GGAGGCAGCATGGAATCATTTTATT 60.222 40.000 0.00 0.00 35.86 1.40
2203 2589 4.282703 GGAGGCAGCATGGAATCATTTTAT 59.717 41.667 0.00 0.00 35.86 1.40
2204 2590 3.638160 GGAGGCAGCATGGAATCATTTTA 59.362 43.478 0.00 0.00 35.86 1.52
2205 2591 2.433239 GGAGGCAGCATGGAATCATTTT 59.567 45.455 0.00 0.00 35.86 1.82
2219 2647 1.186917 TGCAAAACCATGGGAGGCAG 61.187 55.000 18.09 1.70 0.00 4.85
2225 2653 2.871633 GTGAAAAGTGCAAAACCATGGG 59.128 45.455 18.09 0.00 0.00 4.00
2227 2655 4.211794 GGATGTGAAAAGTGCAAAACCATG 59.788 41.667 0.00 0.00 0.00 3.66
2228 2656 4.379652 GGATGTGAAAAGTGCAAAACCAT 58.620 39.130 0.00 0.00 0.00 3.55
2229 2657 3.736433 CGGATGTGAAAAGTGCAAAACCA 60.736 43.478 0.00 0.00 0.00 3.67
2230 2658 2.794350 CGGATGTGAAAAGTGCAAAACC 59.206 45.455 0.00 0.00 0.00 3.27
2231 2659 2.218530 GCGGATGTGAAAAGTGCAAAAC 59.781 45.455 0.00 0.00 0.00 2.43
2232 2660 2.468831 GCGGATGTGAAAAGTGCAAAA 58.531 42.857 0.00 0.00 0.00 2.44
2233 2661 1.269517 GGCGGATGTGAAAAGTGCAAA 60.270 47.619 0.00 0.00 0.00 3.68
2234 2662 0.313672 GGCGGATGTGAAAAGTGCAA 59.686 50.000 0.00 0.00 0.00 4.08
2235 2663 0.821301 TGGCGGATGTGAAAAGTGCA 60.821 50.000 0.00 0.00 0.00 4.57
2236 2664 0.387239 GTGGCGGATGTGAAAAGTGC 60.387 55.000 0.00 0.00 0.00 4.40
2237 2665 0.950836 TGTGGCGGATGTGAAAAGTG 59.049 50.000 0.00 0.00 0.00 3.16
2238 2666 1.608590 CTTGTGGCGGATGTGAAAAGT 59.391 47.619 0.00 0.00 0.00 2.66
2239 2667 1.068333 CCTTGTGGCGGATGTGAAAAG 60.068 52.381 0.00 0.00 0.00 2.27
2240 2668 0.958091 CCTTGTGGCGGATGTGAAAA 59.042 50.000 0.00 0.00 0.00 2.29
2241 2669 2.639970 CCTTGTGGCGGATGTGAAA 58.360 52.632 0.00 0.00 0.00 2.69
2242 2670 4.395519 CCTTGTGGCGGATGTGAA 57.604 55.556 0.00 0.00 0.00 3.18
2292 2721 3.119424 TCGTCACGTGATTAACCTGCATA 60.119 43.478 23.12 0.00 0.00 3.14
2321 2750 4.569943 AGCCAATGATACATACCATCGAC 58.430 43.478 0.00 0.00 0.00 4.20
2322 2751 4.890158 AGCCAATGATACATACCATCGA 57.110 40.909 0.00 0.00 0.00 3.59
2334 2763 9.211485 GCAATATAAATTAGCAAAGCCAATGAT 57.789 29.630 0.00 0.00 0.00 2.45
2335 2764 7.381948 CGCAATATAAATTAGCAAAGCCAATGA 59.618 33.333 0.00 0.00 0.00 2.57
2336 2765 7.381948 TCGCAATATAAATTAGCAAAGCCAATG 59.618 33.333 0.00 0.00 0.00 2.82
2337 2766 7.432869 TCGCAATATAAATTAGCAAAGCCAAT 58.567 30.769 0.00 0.00 0.00 3.16
2342 2771 7.417612 ACCACTCGCAATATAAATTAGCAAAG 58.582 34.615 0.00 0.00 0.00 2.77
2347 2776 8.009974 GTGCTAACCACTCGCAATATAAATTAG 58.990 37.037 0.00 0.00 41.35 1.73
2349 2778 6.317642 TGTGCTAACCACTCGCAATATAAATT 59.682 34.615 0.00 0.00 44.92 1.82
2354 2783 3.260475 TGTGCTAACCACTCGCAATAT 57.740 42.857 0.00 0.00 44.92 1.28
2356 2785 2.113860 ATGTGCTAACCACTCGCAAT 57.886 45.000 0.00 0.00 44.92 3.56
2357 2786 1.890876 AATGTGCTAACCACTCGCAA 58.109 45.000 0.00 0.00 44.92 4.85
2358 2787 1.890876 AAATGTGCTAACCACTCGCA 58.109 45.000 0.00 0.00 44.92 5.10
2359 2788 2.414161 GGAAAATGTGCTAACCACTCGC 60.414 50.000 0.00 0.00 44.92 5.03
2360 2789 2.811431 TGGAAAATGTGCTAACCACTCG 59.189 45.455 0.00 0.00 44.92 4.18
2361 2790 3.191371 CCTGGAAAATGTGCTAACCACTC 59.809 47.826 0.00 0.00 44.92 3.51
2362 2791 3.157087 CCTGGAAAATGTGCTAACCACT 58.843 45.455 0.00 0.00 44.92 4.00
2363 2792 3.153919 TCCTGGAAAATGTGCTAACCAC 58.846 45.455 0.00 0.00 44.90 4.16
2364 2793 3.181434 ACTCCTGGAAAATGTGCTAACCA 60.181 43.478 0.00 0.00 0.00 3.67
2365 2794 3.191371 CACTCCTGGAAAATGTGCTAACC 59.809 47.826 0.00 0.00 0.00 2.85
2366 2795 4.425577 CACTCCTGGAAAATGTGCTAAC 57.574 45.455 0.00 0.00 0.00 2.34
2382 2811 4.995124 TCTCGTGAATACTTTAGCACTCC 58.005 43.478 0.00 0.00 0.00 3.85
2386 2815 5.685954 CGCTAATCTCGTGAATACTTTAGCA 59.314 40.000 20.76 0.00 39.81 3.49
2400 2829 0.294887 GTTCACGTGCGCTAATCTCG 59.705 55.000 11.67 6.55 0.00 4.04
2424 2853 2.652079 CTATCCGCTGCGTGCATCG 61.652 63.158 21.59 10.81 43.06 3.84
2435 2864 4.372656 AGCAACAGAGAATTACTATCCGC 58.627 43.478 0.00 0.00 0.00 5.54
2473 2903 5.612725 AAAGTGGCTTCATTCCTCAAAAA 57.387 34.783 0.00 0.00 0.00 1.94
2474 2904 6.916360 ATAAAGTGGCTTCATTCCTCAAAA 57.084 33.333 0.00 0.00 0.00 2.44
2475 2905 6.916360 AATAAAGTGGCTTCATTCCTCAAA 57.084 33.333 0.00 0.00 0.00 2.69
2476 2906 8.593945 ATTAATAAAGTGGCTTCATTCCTCAA 57.406 30.769 0.00 0.00 0.00 3.02
2477 2907 7.833682 TGATTAATAAAGTGGCTTCATTCCTCA 59.166 33.333 0.00 0.00 0.00 3.86
2478 2908 8.225603 TGATTAATAAAGTGGCTTCATTCCTC 57.774 34.615 0.00 0.00 0.00 3.71
2479 2909 8.593945 TTGATTAATAAAGTGGCTTCATTCCT 57.406 30.769 0.00 0.00 0.00 3.36
2480 2910 9.822185 ATTTGATTAATAAAGTGGCTTCATTCC 57.178 29.630 0.00 0.00 0.00 3.01
2483 2913 9.822185 GGAATTTGATTAATAAAGTGGCTTCAT 57.178 29.630 0.00 0.00 0.00 2.57
2484 2914 8.811017 TGGAATTTGATTAATAAAGTGGCTTCA 58.189 29.630 0.00 0.00 0.00 3.02
2485 2915 9.087424 GTGGAATTTGATTAATAAAGTGGCTTC 57.913 33.333 0.00 0.00 0.00 3.86
2486 2916 8.592809 TGTGGAATTTGATTAATAAAGTGGCTT 58.407 29.630 0.00 0.00 0.00 4.35
2487 2917 8.133024 TGTGGAATTTGATTAATAAAGTGGCT 57.867 30.769 0.00 0.00 0.00 4.75
2488 2918 8.250332 TCTGTGGAATTTGATTAATAAAGTGGC 58.750 33.333 0.00 0.00 0.00 5.01
2509 2939 3.753272 CAGTTTGTATCCCACCTTCTGTG 59.247 47.826 0.00 0.00 45.01 3.66
2510 2940 3.244911 CCAGTTTGTATCCCACCTTCTGT 60.245 47.826 0.00 0.00 0.00 3.41
2511 2941 3.009033 TCCAGTTTGTATCCCACCTTCTG 59.991 47.826 0.00 0.00 0.00 3.02
2512 2942 3.256704 TCCAGTTTGTATCCCACCTTCT 58.743 45.455 0.00 0.00 0.00 2.85
2513 2943 3.713826 TCCAGTTTGTATCCCACCTTC 57.286 47.619 0.00 0.00 0.00 3.46
2514 2944 3.591527 TGATCCAGTTTGTATCCCACCTT 59.408 43.478 0.00 0.00 0.00 3.50
2515 2945 3.189606 TGATCCAGTTTGTATCCCACCT 58.810 45.455 0.00 0.00 0.00 4.00
2516 2946 3.644966 TGATCCAGTTTGTATCCCACC 57.355 47.619 0.00 0.00 0.00 4.61
2517 2947 4.336433 CACATGATCCAGTTTGTATCCCAC 59.664 45.833 0.00 0.00 0.00 4.61
2518 2948 4.525996 CACATGATCCAGTTTGTATCCCA 58.474 43.478 0.00 0.00 0.00 4.37
2519 2949 3.885297 CCACATGATCCAGTTTGTATCCC 59.115 47.826 0.00 0.00 0.00 3.85
2520 2950 3.316308 GCCACATGATCCAGTTTGTATCC 59.684 47.826 0.00 0.00 0.00 2.59
2521 2951 4.036027 CAGCCACATGATCCAGTTTGTATC 59.964 45.833 0.00 0.00 0.00 2.24
2522 2952 3.949754 CAGCCACATGATCCAGTTTGTAT 59.050 43.478 0.00 0.00 0.00 2.29
2523 2953 3.346315 CAGCCACATGATCCAGTTTGTA 58.654 45.455 0.00 0.00 0.00 2.41
2524 2954 2.165167 CAGCCACATGATCCAGTTTGT 58.835 47.619 0.00 0.00 0.00 2.83
2525 2955 1.475280 CCAGCCACATGATCCAGTTTG 59.525 52.381 0.00 0.00 0.00 2.93
2526 2956 1.843368 CCAGCCACATGATCCAGTTT 58.157 50.000 0.00 0.00 0.00 2.66
2527 2957 0.682209 GCCAGCCACATGATCCAGTT 60.682 55.000 0.00 0.00 0.00 3.16
2528 2958 1.077212 GCCAGCCACATGATCCAGT 60.077 57.895 0.00 0.00 0.00 4.00
2529 2959 1.826921 GGCCAGCCACATGATCCAG 60.827 63.158 3.12 0.00 35.81 3.86
2530 2960 2.276409 GGCCAGCCACATGATCCA 59.724 61.111 3.12 0.00 35.81 3.41
2531 2961 2.276409 TGGCCAGCCACATGATCC 59.724 61.111 7.43 0.00 41.89 3.36
2545 2975 0.387239 GTCGTCATGTTTGGCTTGGC 60.387 55.000 0.00 0.00 0.00 4.52
2546 2976 0.240945 GGTCGTCATGTTTGGCTTGG 59.759 55.000 0.00 0.00 0.00 3.61
2547 2977 0.240945 GGGTCGTCATGTTTGGCTTG 59.759 55.000 0.00 0.00 0.00 4.01
2548 2978 1.234615 CGGGTCGTCATGTTTGGCTT 61.235 55.000 0.00 0.00 0.00 4.35
2549 2979 1.671054 CGGGTCGTCATGTTTGGCT 60.671 57.895 0.00 0.00 0.00 4.75
2550 2980 2.686816 CCGGGTCGTCATGTTTGGC 61.687 63.158 0.00 0.00 0.00 4.52
2551 2981 1.004320 TCCGGGTCGTCATGTTTGG 60.004 57.895 0.00 0.00 0.00 3.28
2552 2982 1.635663 GCTCCGGGTCGTCATGTTTG 61.636 60.000 0.00 0.00 0.00 2.93
2553 2983 1.375523 GCTCCGGGTCGTCATGTTT 60.376 57.895 0.00 0.00 0.00 2.83
2554 2984 0.968901 TAGCTCCGGGTCGTCATGTT 60.969 55.000 0.00 0.00 0.00 2.71
2555 2985 1.379443 TAGCTCCGGGTCGTCATGT 60.379 57.895 0.00 0.00 0.00 3.21
2556 2986 1.360551 CTAGCTCCGGGTCGTCATG 59.639 63.158 0.00 0.00 0.00 3.07
2557 2987 1.828660 CCTAGCTCCGGGTCGTCAT 60.829 63.158 0.00 0.00 0.00 3.06
2558 2988 2.439701 CCTAGCTCCGGGTCGTCA 60.440 66.667 0.00 0.00 0.00 4.35
2559 2989 1.602327 AAACCTAGCTCCGGGTCGTC 61.602 60.000 0.00 0.00 34.35 4.20
2560 2990 1.602327 GAAACCTAGCTCCGGGTCGT 61.602 60.000 0.00 0.00 34.35 4.34
2561 2991 1.141234 GAAACCTAGCTCCGGGTCG 59.859 63.158 0.00 0.00 34.35 4.79
2562 2992 1.682323 CTAGAAACCTAGCTCCGGGTC 59.318 57.143 0.00 0.00 34.35 4.46
2563 2993 1.777941 CTAGAAACCTAGCTCCGGGT 58.222 55.000 0.00 3.85 37.44 5.28
2582 3012 6.254373 GAAGCTCATAGGTTAGCAAAATTTGC 59.746 38.462 21.86 21.86 45.62 3.68
2583 3013 6.470235 CGAAGCTCATAGGTTAGCAAAATTTG 59.530 38.462 0.57 0.57 41.32 2.32
2584 3014 6.374333 TCGAAGCTCATAGGTTAGCAAAATTT 59.626 34.615 0.00 0.00 41.32 1.82
2585 3015 5.880332 TCGAAGCTCATAGGTTAGCAAAATT 59.120 36.000 0.00 0.00 41.32 1.82
2586 3016 5.294552 GTCGAAGCTCATAGGTTAGCAAAAT 59.705 40.000 0.00 0.00 41.32 1.82
2587 3017 4.630069 GTCGAAGCTCATAGGTTAGCAAAA 59.370 41.667 0.00 0.00 41.32 2.44
2588 3018 4.181578 GTCGAAGCTCATAGGTTAGCAAA 58.818 43.478 0.00 0.00 41.32 3.68
2589 3019 3.194755 TGTCGAAGCTCATAGGTTAGCAA 59.805 43.478 0.00 0.00 41.32 3.91
2590 3020 2.758423 TGTCGAAGCTCATAGGTTAGCA 59.242 45.455 0.00 0.00 41.32 3.49
2591 3021 3.438297 TGTCGAAGCTCATAGGTTAGC 57.562 47.619 0.00 0.00 35.86 3.09
2592 3022 6.978659 TGTTAATGTCGAAGCTCATAGGTTAG 59.021 38.462 0.00 0.00 35.86 2.34
2593 3023 6.755141 GTGTTAATGTCGAAGCTCATAGGTTA 59.245 38.462 0.00 0.00 35.86 2.85
2594 3024 5.581085 GTGTTAATGTCGAAGCTCATAGGTT 59.419 40.000 0.00 0.00 38.85 3.50
2595 3025 5.105310 AGTGTTAATGTCGAAGCTCATAGGT 60.105 40.000 0.00 0.00 0.00 3.08
2596 3026 5.352284 AGTGTTAATGTCGAAGCTCATAGG 58.648 41.667 0.00 0.00 0.00 2.57
2597 3027 6.140895 CGTAGTGTTAATGTCGAAGCTCATAG 59.859 42.308 0.00 0.00 0.00 2.23
2598 3028 5.969435 CGTAGTGTTAATGTCGAAGCTCATA 59.031 40.000 0.00 0.00 0.00 2.15
2599 3029 4.798907 CGTAGTGTTAATGTCGAAGCTCAT 59.201 41.667 0.00 0.00 0.00 2.90
2600 3030 4.083164 TCGTAGTGTTAATGTCGAAGCTCA 60.083 41.667 0.00 0.00 0.00 4.26
2601 3031 4.262510 GTCGTAGTGTTAATGTCGAAGCTC 59.737 45.833 0.00 0.00 0.00 4.09
2602 3032 4.082895 AGTCGTAGTGTTAATGTCGAAGCT 60.083 41.667 0.00 0.00 0.00 3.74
2603 3033 4.164294 AGTCGTAGTGTTAATGTCGAAGC 58.836 43.478 0.00 0.00 0.00 3.86
2604 3034 6.361481 TGAAAGTCGTAGTGTTAATGTCGAAG 59.639 38.462 0.00 0.00 0.00 3.79
2605 3035 6.207928 TGAAAGTCGTAGTGTTAATGTCGAA 58.792 36.000 0.00 0.00 0.00 3.71
2606 3036 5.761003 TGAAAGTCGTAGTGTTAATGTCGA 58.239 37.500 0.00 0.00 0.00 4.20
2607 3037 6.442487 TTGAAAGTCGTAGTGTTAATGTCG 57.558 37.500 0.00 0.00 0.00 4.35
2608 3038 9.659830 ATTTTTGAAAGTCGTAGTGTTAATGTC 57.340 29.630 0.00 0.00 0.00 3.06
2645 3075 1.591768 TCTAGATCGGCCCCCTTTTT 58.408 50.000 0.00 0.00 0.00 1.94
2646 3076 1.821088 ATCTAGATCGGCCCCCTTTT 58.179 50.000 0.00 0.00 0.00 2.27
2647 3077 1.821088 AATCTAGATCGGCCCCCTTT 58.179 50.000 5.51 0.00 0.00 3.11
2648 3078 1.821088 AAATCTAGATCGGCCCCCTT 58.179 50.000 5.51 0.00 0.00 3.95
2649 3079 1.821088 AAAATCTAGATCGGCCCCCT 58.179 50.000 5.51 0.00 0.00 4.79
2650 3080 3.519913 AGATAAAATCTAGATCGGCCCCC 59.480 47.826 5.51 0.00 38.00 5.40
2651 3081 4.223032 TGAGATAAAATCTAGATCGGCCCC 59.777 45.833 5.51 0.00 40.38 5.80
2652 3082 5.407407 TGAGATAAAATCTAGATCGGCCC 57.593 43.478 5.51 0.00 40.38 5.80
2653 3083 6.634805 TCATGAGATAAAATCTAGATCGGCC 58.365 40.000 5.51 0.00 40.38 6.13
2654 3084 8.602328 CATTCATGAGATAAAATCTAGATCGGC 58.398 37.037 5.51 0.00 40.38 5.54
2655 3085 9.866798 TCATTCATGAGATAAAATCTAGATCGG 57.133 33.333 5.51 0.00 40.38 4.18
2662 3092 8.794553 GGAGCAATCATTCATGAGATAAAATCT 58.205 33.333 0.00 0.00 43.70 2.40
2663 3093 7.749570 CGGAGCAATCATTCATGAGATAAAATC 59.250 37.037 0.00 0.00 40.64 2.17
2664 3094 7.230108 ACGGAGCAATCATTCATGAGATAAAAT 59.770 33.333 0.00 0.00 40.64 1.82
2665 3095 6.543465 ACGGAGCAATCATTCATGAGATAAAA 59.457 34.615 0.00 0.00 40.64 1.52
2666 3096 6.017687 CACGGAGCAATCATTCATGAGATAAA 60.018 38.462 0.00 0.00 40.64 1.40
2667 3097 5.467735 CACGGAGCAATCATTCATGAGATAA 59.532 40.000 0.00 0.00 40.64 1.75
2668 3098 4.992951 CACGGAGCAATCATTCATGAGATA 59.007 41.667 0.00 0.00 40.64 1.98
2669 3099 3.813724 CACGGAGCAATCATTCATGAGAT 59.186 43.478 0.00 0.00 40.64 2.75
2670 3100 3.200483 CACGGAGCAATCATTCATGAGA 58.800 45.455 0.00 0.00 40.64 3.27
2671 3101 2.289820 CCACGGAGCAATCATTCATGAG 59.710 50.000 0.00 0.00 40.64 2.90
2672 3102 2.291365 CCACGGAGCAATCATTCATGA 58.709 47.619 0.00 0.00 41.70 3.07
2673 3103 2.019249 ACCACGGAGCAATCATTCATG 58.981 47.619 0.00 0.00 0.00 3.07
2674 3104 2.019249 CACCACGGAGCAATCATTCAT 58.981 47.619 0.00 0.00 0.00 2.57
2675 3105 1.003003 TCACCACGGAGCAATCATTCA 59.997 47.619 0.00 0.00 0.00 2.57
2676 3106 1.398390 GTCACCACGGAGCAATCATTC 59.602 52.381 0.00 0.00 0.00 2.67
2677 3107 1.453155 GTCACCACGGAGCAATCATT 58.547 50.000 0.00 0.00 0.00 2.57
2678 3108 0.392998 GGTCACCACGGAGCAATCAT 60.393 55.000 0.00 0.00 35.43 2.45
2679 3109 1.003839 GGTCACCACGGAGCAATCA 60.004 57.895 0.00 0.00 35.43 2.57
2680 3110 0.392998 ATGGTCACCACGGAGCAATC 60.393 55.000 0.00 0.00 46.98 2.67
2681 3111 0.038166 AATGGTCACCACGGAGCAAT 59.962 50.000 0.00 0.00 46.98 3.56
2682 3112 0.888736 CAATGGTCACCACGGAGCAA 60.889 55.000 0.00 0.00 46.98 3.91
2684 3114 2.690778 GCAATGGTCACCACGGAGC 61.691 63.158 0.00 0.00 35.80 4.70
2685 3115 1.003355 AGCAATGGTCACCACGGAG 60.003 57.895 0.00 0.00 35.80 4.63
2686 3116 1.302431 CAGCAATGGTCACCACGGA 60.302 57.895 0.00 0.00 35.80 4.69
2687 3117 2.981560 GCAGCAATGGTCACCACGG 61.982 63.158 0.00 0.00 35.80 4.94
2688 3118 2.562912 GCAGCAATGGTCACCACG 59.437 61.111 0.00 0.00 35.80 4.94
2689 3119 2.639327 GGGCAGCAATGGTCACCAC 61.639 63.158 0.00 0.00 35.80 4.16
2690 3120 2.283101 GGGCAGCAATGGTCACCA 60.283 61.111 0.00 0.00 38.19 4.17
2691 3121 1.598701 GAAGGGCAGCAATGGTCACC 61.599 60.000 0.00 0.00 0.00 4.02
2692 3122 0.895100 TGAAGGGCAGCAATGGTCAC 60.895 55.000 0.00 0.00 0.00 3.67
2693 3123 0.040058 ATGAAGGGCAGCAATGGTCA 59.960 50.000 0.00 0.00 0.00 4.02
2694 3124 0.458669 CATGAAGGGCAGCAATGGTC 59.541 55.000 0.00 0.00 0.00 4.02
2695 3125 0.040058 TCATGAAGGGCAGCAATGGT 59.960 50.000 0.00 0.00 0.00 3.55
2696 3126 1.068588 CATCATGAAGGGCAGCAATGG 59.931 52.381 0.00 0.00 0.00 3.16
2697 3127 1.754803 ACATCATGAAGGGCAGCAATG 59.245 47.619 0.00 0.00 0.00 2.82
2698 3128 2.029623 GACATCATGAAGGGCAGCAAT 58.970 47.619 0.00 0.00 0.00 3.56
2699 3129 1.005097 AGACATCATGAAGGGCAGCAA 59.995 47.619 0.00 0.00 0.00 3.91
2700 3130 0.622136 AGACATCATGAAGGGCAGCA 59.378 50.000 0.00 0.00 0.00 4.41
2701 3131 1.674962 GAAGACATCATGAAGGGCAGC 59.325 52.381 0.00 0.00 0.00 5.25
2702 3132 2.295885 GGAAGACATCATGAAGGGCAG 58.704 52.381 0.00 0.00 0.00 4.85
2703 3133 1.634973 TGGAAGACATCATGAAGGGCA 59.365 47.619 0.00 0.00 0.00 5.36
2704 3134 2.425143 TGGAAGACATCATGAAGGGC 57.575 50.000 0.00 0.00 0.00 5.19
2714 3144 2.719739 CAAGCAGGTGATGGAAGACAT 58.280 47.619 0.00 0.00 44.18 3.06
2715 3145 1.883638 GCAAGCAGGTGATGGAAGACA 60.884 52.381 0.00 0.00 0.00 3.41
2716 3146 0.807496 GCAAGCAGGTGATGGAAGAC 59.193 55.000 0.00 0.00 0.00 3.01
2717 3147 0.401356 TGCAAGCAGGTGATGGAAGA 59.599 50.000 0.00 0.00 0.00 2.87
2718 3148 0.809385 CTGCAAGCAGGTGATGGAAG 59.191 55.000 14.10 0.00 40.17 3.46
2719 3149 2.951269 CTGCAAGCAGGTGATGGAA 58.049 52.632 14.10 0.00 40.17 3.53
2720 3150 4.728409 CTGCAAGCAGGTGATGGA 57.272 55.556 14.10 0.00 40.17 3.41
2729 3159 0.610174 ATCTCTTCCGACTGCAAGCA 59.390 50.000 0.00 0.00 37.60 3.91
2730 3160 1.005340 CATCTCTTCCGACTGCAAGC 58.995 55.000 0.00 0.00 37.60 4.01
2731 3161 2.662006 TCATCTCTTCCGACTGCAAG 57.338 50.000 0.00 0.00 42.29 4.01
2732 3162 2.497273 TCATCATCTCTTCCGACTGCAA 59.503 45.455 0.00 0.00 0.00 4.08
2733 3163 2.102578 TCATCATCTCTTCCGACTGCA 58.897 47.619 0.00 0.00 0.00 4.41
2734 3164 2.879002 TCATCATCTCTTCCGACTGC 57.121 50.000 0.00 0.00 0.00 4.40
2735 3165 5.199024 AGATTCATCATCTCTTCCGACTG 57.801 43.478 0.00 0.00 37.79 3.51
2736 3166 5.867903 AAGATTCATCATCTCTTCCGACT 57.132 39.130 0.00 0.00 41.93 4.18
2737 3167 5.236047 CCAAAGATTCATCATCTCTTCCGAC 59.764 44.000 0.00 0.00 41.93 4.79
2738 3168 5.129320 TCCAAAGATTCATCATCTCTTCCGA 59.871 40.000 0.00 0.00 41.93 4.55
2739 3169 5.363101 TCCAAAGATTCATCATCTCTTCCG 58.637 41.667 0.00 0.00 41.93 4.30
2740 3170 6.590068 TCTCCAAAGATTCATCATCTCTTCC 58.410 40.000 0.00 0.00 41.93 3.46
2741 3171 7.932491 TCATCTCCAAAGATTCATCATCTCTTC 59.068 37.037 0.00 0.00 41.93 2.87
2742 3172 7.803131 TCATCTCCAAAGATTCATCATCTCTT 58.197 34.615 0.00 0.00 41.93 2.85
2743 3173 7.376335 TCATCTCCAAAGATTCATCATCTCT 57.624 36.000 0.00 0.00 41.93 3.10
2744 3174 7.932491 TCTTCATCTCCAAAGATTCATCATCTC 59.068 37.037 0.00 0.00 41.93 2.75
2745 3175 7.803131 TCTTCATCTCCAAAGATTCATCATCT 58.197 34.615 0.00 0.00 45.03 2.90
2746 3176 8.624367 ATCTTCATCTCCAAAGATTCATCATC 57.376 34.615 0.00 0.00 40.38 2.92
2747 3177 8.441572 AGATCTTCATCTCCAAAGATTCATCAT 58.558 33.333 0.00 0.00 41.20 2.45
2748 3178 7.803131 AGATCTTCATCTCCAAAGATTCATCA 58.197 34.615 0.00 0.00 41.20 3.07
2749 3179 8.680039 AAGATCTTCATCTCCAAAGATTCATC 57.320 34.615 0.88 0.00 41.20 2.92
2750 3180 8.272889 TGAAGATCTTCATCTCCAAAGATTCAT 58.727 33.333 30.05 0.00 43.90 2.57
2751 3181 7.627311 TGAAGATCTTCATCTCCAAAGATTCA 58.373 34.615 30.05 6.31 43.90 2.57
2765 3195 7.392673 AGCTTTATTTCTTGCTGAAGATCTTCA 59.607 33.333 31.10 31.10 46.27 3.02
2766 3196 7.760437 AGCTTTATTTCTTGCTGAAGATCTTC 58.240 34.615 25.68 25.68 38.05 2.87
2767 3197 7.700022 AGCTTTATTTCTTGCTGAAGATCTT 57.300 32.000 7.95 7.95 38.05 2.40
2768 3198 7.148103 GGAAGCTTTATTTCTTGCTGAAGATCT 60.148 37.037 0.00 0.00 38.05 2.75
2769 3199 6.971756 GGAAGCTTTATTTCTTGCTGAAGATC 59.028 38.462 0.00 0.00 38.05 2.75
2770 3200 6.861144 GGAAGCTTTATTTCTTGCTGAAGAT 58.139 36.000 0.00 0.00 38.05 2.40
2771 3201 6.259550 GGAAGCTTTATTTCTTGCTGAAGA 57.740 37.500 0.00 0.00 36.36 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.