Multiple sequence alignment - TraesCS7D01G367600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G367600 chr7D 100.000 2851 0 0 1 2851 475725135 475727985 0.000000e+00 5265.0
1 TraesCS7D01G367600 chr7D 90.476 63 6 0 2345 2407 6744967 6744905 1.820000e-12 84.2
2 TraesCS7D01G367600 chr7D 96.000 50 1 1 2358 2407 577847792 577847840 2.350000e-11 80.5
3 TraesCS7D01G367600 chr7B 93.942 2179 66 31 1 2153 499870735 499872873 0.000000e+00 3232.0
4 TraesCS7D01G367600 chr7B 90.000 50 4 1 2358 2407 641326192 641326240 2.370000e-06 63.9
5 TraesCS7D01G367600 chr7A 89.177 2199 121 57 1 2153 520336610 520334483 0.000000e+00 2634.0
6 TraesCS7D01G367600 chr7A 82.927 205 11 11 1959 2153 520315820 520315630 2.270000e-36 163.0
7 TraesCS7D01G367600 chr5B 79.045 377 47 20 2484 2838 22759692 22759326 2.210000e-56 230.0
8 TraesCS7D01G367600 chr5B 89.655 58 6 0 2350 2407 185218510 185218453 1.100000e-09 75.0
9 TraesCS7D01G367600 chr6A 91.379 58 5 0 2350 2407 107509477 107509420 2.350000e-11 80.5
10 TraesCS7D01G367600 chr2A 91.489 47 4 0 2355 2401 764701081 764701127 6.590000e-07 65.8
11 TraesCS7D01G367600 chr5D 86.667 60 4 3 2346 2403 449506580 449506523 2.370000e-06 63.9
12 TraesCS7D01G367600 chr5D 92.308 39 1 1 2365 2403 449506500 449506464 1.000000e-03 54.7
13 TraesCS7D01G367600 chr3B 100.000 32 0 0 2370 2401 736323880 736323849 3.070000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G367600 chr7D 475725135 475727985 2850 False 5265 5265 100.000 1 2851 1 chr7D.!!$F1 2850
1 TraesCS7D01G367600 chr7B 499870735 499872873 2138 False 3232 3232 93.942 1 2153 1 chr7B.!!$F1 2152
2 TraesCS7D01G367600 chr7A 520334483 520336610 2127 True 2634 2634 89.177 1 2153 1 chr7A.!!$R2 2152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 802 0.250038 GCTAAGAGATCGCCATGGCA 60.25 55.0 34.93 22.41 42.06 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2306 2382 0.029834 GCCTAGGTTGATGCGCAATG 59.97 55.0 17.11 0.0 39.03 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 93 6.019479 CAGTGATCAAATCGAACTAAGTAGGC 60.019 42.308 0.00 0.00 0.00 3.93
93 95 3.777478 TCAAATCGAACTAAGTAGGCCG 58.223 45.455 0.00 0.00 0.00 6.13
378 387 2.167662 AGGACCAAAACATTAAGGGCG 58.832 47.619 0.00 0.00 0.00 6.13
432 441 3.214328 AGCGCCGAATCCAATTTAATCT 58.786 40.909 2.29 0.00 0.00 2.40
526 536 1.045407 AGACTAACCTGCACCGAACA 58.955 50.000 0.00 0.00 0.00 3.18
591 602 5.163301 GGCAACTAGAGTATCAATCCCTCAA 60.163 44.000 0.00 0.00 37.82 3.02
592 603 6.349300 GCAACTAGAGTATCAATCCCTCAAA 58.651 40.000 0.00 0.00 37.82 2.69
769 800 0.683973 AGGCTAAGAGATCGCCATGG 59.316 55.000 7.63 7.63 46.14 3.66
770 801 0.952984 GGCTAAGAGATCGCCATGGC 60.953 60.000 27.67 27.67 43.25 4.40
771 802 0.250038 GCTAAGAGATCGCCATGGCA 60.250 55.000 34.93 22.41 42.06 4.92
813 852 3.067480 GCATTGATGGCGGGTGGTG 62.067 63.158 0.00 0.00 0.00 4.17
943 989 0.400594 AAGGCACCCACTCAAGTACC 59.599 55.000 0.00 0.00 0.00 3.34
948 994 1.691976 CACCCACTCAAGTACCACTGA 59.308 52.381 0.00 0.00 0.00 3.41
959 1005 0.392706 TACCACTGACACTGCCACAG 59.607 55.000 0.00 0.00 37.52 3.66
981 1027 4.525100 AGTCCTCTTTGTCTCTACCACTTC 59.475 45.833 0.00 0.00 0.00 3.01
998 1044 2.229302 ACTTCGAGGAGTTCTTCGGAAG 59.771 50.000 11.54 11.54 44.21 3.46
1166 1212 8.327941 ACCTTGTTGCATATATAATACTGCTG 57.672 34.615 7.39 0.00 35.66 4.41
1187 1233 2.420022 GCCACGTACTTTTGCTGATCAT 59.580 45.455 0.00 0.00 0.00 2.45
1197 1243 2.541120 GCTGATCATGAGGCACGCC 61.541 63.158 0.09 0.00 0.00 5.68
1412 1461 0.321298 TCCTGCGAGTAAGGCAAACC 60.321 55.000 0.00 0.00 40.39 3.27
1505 1568 5.330455 TCTAACTGTAACTCTGCATCTGG 57.670 43.478 0.00 0.00 0.00 3.86
1592 1655 3.767268 ATCCTGGGCTCCCTCGGA 61.767 66.667 15.47 15.47 39.41 4.55
1605 1668 2.203640 TCGGAGAGGTGTGCCACT 60.204 61.111 0.00 0.00 38.43 4.00
1852 1915 0.256752 TACGCCTGCCACTACTAGGA 59.743 55.000 0.00 0.00 33.33 2.94
1853 1916 1.038130 ACGCCTGCCACTACTAGGAG 61.038 60.000 0.00 0.00 37.41 3.69
1854 1917 1.739338 CGCCTGCCACTACTAGGAGG 61.739 65.000 6.98 0.00 33.33 4.30
1859 1922 1.623163 GCCACTACTAGGAGGCTAGG 58.377 60.000 6.98 3.90 43.70 3.02
1860 1923 1.623163 CCACTACTAGGAGGCTAGGC 58.377 60.000 8.55 8.55 0.00 3.93
1861 1924 1.146152 CCACTACTAGGAGGCTAGGCT 59.854 57.143 20.36 20.36 0.00 4.58
1862 1925 2.375845 CCACTACTAGGAGGCTAGGCTA 59.624 54.545 20.27 2.60 0.00 3.93
1863 1926 3.414269 CACTACTAGGAGGCTAGGCTAC 58.586 54.545 20.87 20.87 0.00 3.58
1864 1927 2.376181 ACTACTAGGAGGCTAGGCTACC 59.624 54.545 24.36 21.93 0.00 3.18
1865 1928 0.110869 ACTAGGAGGCTAGGCTACCG 59.889 60.000 24.36 17.72 0.00 4.02
1866 1929 0.609681 CTAGGAGGCTAGGCTACCGG 60.610 65.000 24.36 13.63 0.00 5.28
1867 1930 2.710237 TAGGAGGCTAGGCTACCGGC 62.710 65.000 24.36 9.07 40.90 6.13
1995 2070 3.108144 CGCTATGCCTTTATGTGTTTGC 58.892 45.455 0.00 0.00 0.00 3.68
2029 2104 4.152644 CATGCCATGCCGTCTCAT 57.847 55.556 0.00 0.00 0.00 2.90
2030 2105 3.310727 CATGCCATGCCGTCTCATA 57.689 52.632 0.00 0.00 0.00 2.15
2072 2147 5.458041 TGCTTTGCTTGCTTTTCTTATCT 57.542 34.783 0.00 0.00 0.00 1.98
2121 2197 9.436957 TTGATTGAGGAGTTATTAGTGAAAGAC 57.563 33.333 0.00 0.00 0.00 3.01
2138 2214 5.406477 TGAAAGACATAGTATGCATGATCGC 59.594 40.000 10.16 0.00 0.00 4.58
2153 2229 3.585862 TGATCGCTACCTTTGTTCAGTC 58.414 45.455 0.00 0.00 0.00 3.51
2154 2230 3.258372 TGATCGCTACCTTTGTTCAGTCT 59.742 43.478 0.00 0.00 0.00 3.24
2155 2231 3.746045 TCGCTACCTTTGTTCAGTCTT 57.254 42.857 0.00 0.00 0.00 3.01
2156 2232 4.067972 TCGCTACCTTTGTTCAGTCTTT 57.932 40.909 0.00 0.00 0.00 2.52
2157 2233 3.807622 TCGCTACCTTTGTTCAGTCTTTG 59.192 43.478 0.00 0.00 0.00 2.77
2158 2234 3.560068 CGCTACCTTTGTTCAGTCTTTGT 59.440 43.478 0.00 0.00 0.00 2.83
2159 2235 4.035208 CGCTACCTTTGTTCAGTCTTTGTT 59.965 41.667 0.00 0.00 0.00 2.83
2160 2236 5.448632 CGCTACCTTTGTTCAGTCTTTGTTT 60.449 40.000 0.00 0.00 0.00 2.83
2161 2237 6.330278 GCTACCTTTGTTCAGTCTTTGTTTT 58.670 36.000 0.00 0.00 0.00 2.43
2162 2238 6.811665 GCTACCTTTGTTCAGTCTTTGTTTTT 59.188 34.615 0.00 0.00 0.00 1.94
2182 2258 3.658757 TTTTTCTTGCGGGGATCTTTG 57.341 42.857 0.00 0.00 0.00 2.77
2183 2259 2.286365 TTTCTTGCGGGGATCTTTGT 57.714 45.000 0.00 0.00 0.00 2.83
2184 2260 2.286365 TTCTTGCGGGGATCTTTGTT 57.714 45.000 0.00 0.00 0.00 2.83
2185 2261 1.821216 TCTTGCGGGGATCTTTGTTC 58.179 50.000 0.00 0.00 0.00 3.18
2186 2262 1.073125 TCTTGCGGGGATCTTTGTTCA 59.927 47.619 0.00 0.00 0.00 3.18
2187 2263 1.470098 CTTGCGGGGATCTTTGTTCAG 59.530 52.381 0.00 0.00 0.00 3.02
2188 2264 0.400213 TGCGGGGATCTTTGTTCAGT 59.600 50.000 0.00 0.00 0.00 3.41
2189 2265 1.626321 TGCGGGGATCTTTGTTCAGTA 59.374 47.619 0.00 0.00 0.00 2.74
2190 2266 2.007608 GCGGGGATCTTTGTTCAGTAC 58.992 52.381 0.00 0.00 0.00 2.73
2191 2267 2.354805 GCGGGGATCTTTGTTCAGTACT 60.355 50.000 0.00 0.00 0.00 2.73
2192 2268 3.868754 GCGGGGATCTTTGTTCAGTACTT 60.869 47.826 0.00 0.00 0.00 2.24
2193 2269 3.933332 CGGGGATCTTTGTTCAGTACTTC 59.067 47.826 0.00 0.00 0.00 3.01
2194 2270 4.562757 CGGGGATCTTTGTTCAGTACTTCA 60.563 45.833 0.00 0.00 0.00 3.02
2195 2271 4.938226 GGGGATCTTTGTTCAGTACTTCAG 59.062 45.833 0.00 0.00 0.00 3.02
2196 2272 5.513267 GGGGATCTTTGTTCAGTACTTCAGT 60.513 44.000 0.00 0.00 0.00 3.41
2197 2273 5.998363 GGGATCTTTGTTCAGTACTTCAGTT 59.002 40.000 0.00 0.00 0.00 3.16
2198 2274 7.159372 GGGATCTTTGTTCAGTACTTCAGTTA 58.841 38.462 0.00 0.00 0.00 2.24
2199 2275 7.824779 GGGATCTTTGTTCAGTACTTCAGTTAT 59.175 37.037 0.00 0.00 0.00 1.89
2200 2276 9.871238 GGATCTTTGTTCAGTACTTCAGTTATA 57.129 33.333 0.00 0.00 0.00 0.98
2209 2285 8.738199 TCAGTACTTCAGTTATAAAAGACACG 57.262 34.615 0.00 0.00 0.00 4.49
2210 2286 8.570488 TCAGTACTTCAGTTATAAAAGACACGA 58.430 33.333 0.00 1.75 0.00 4.35
2211 2287 9.188588 CAGTACTTCAGTTATAAAAGACACGAA 57.811 33.333 0.00 0.00 0.00 3.85
2212 2288 9.754382 AGTACTTCAGTTATAAAAGACACGAAA 57.246 29.630 3.02 0.00 0.00 3.46
2215 2291 9.321562 ACTTCAGTTATAAAAGACACGAAAAGA 57.678 29.630 3.02 0.00 0.00 2.52
2218 2294 9.706691 TCAGTTATAAAAGACACGAAAAGATCT 57.293 29.630 0.00 0.00 0.00 2.75
2226 2302 8.608844 AAAGACACGAAAAGATCTTATTGACT 57.391 30.769 8.75 6.55 31.77 3.41
2227 2303 9.706691 AAAGACACGAAAAGATCTTATTGACTA 57.293 29.630 8.75 0.00 31.77 2.59
2228 2304 8.918961 AGACACGAAAAGATCTTATTGACTAG 57.081 34.615 8.75 0.00 0.00 2.57
2229 2305 7.976734 AGACACGAAAAGATCTTATTGACTAGG 59.023 37.037 8.75 0.00 0.00 3.02
2230 2306 7.837863 ACACGAAAAGATCTTATTGACTAGGA 58.162 34.615 8.75 0.00 0.00 2.94
2231 2307 8.311836 ACACGAAAAGATCTTATTGACTAGGAA 58.688 33.333 8.75 0.00 0.00 3.36
2232 2308 8.812329 CACGAAAAGATCTTATTGACTAGGAAG 58.188 37.037 8.75 0.00 0.00 3.46
2233 2309 8.532819 ACGAAAAGATCTTATTGACTAGGAAGT 58.467 33.333 8.75 0.00 39.21 3.01
2234 2310 8.812329 CGAAAAGATCTTATTGACTAGGAAGTG 58.188 37.037 8.75 0.00 35.56 3.16
2235 2311 9.660180 GAAAAGATCTTATTGACTAGGAAGTGT 57.340 33.333 8.75 0.00 35.56 3.55
2236 2312 9.660180 AAAAGATCTTATTGACTAGGAAGTGTC 57.340 33.333 8.75 0.00 35.56 3.67
2237 2313 7.354751 AGATCTTATTGACTAGGAAGTGTCC 57.645 40.000 0.00 0.00 45.35 4.02
2251 2327 6.038997 GGAAGTGTCCAAGTAAGACTATGT 57.961 41.667 0.00 0.00 44.26 2.29
2252 2328 7.166691 GGAAGTGTCCAAGTAAGACTATGTA 57.833 40.000 0.00 0.00 44.26 2.29
2253 2329 7.034397 GGAAGTGTCCAAGTAAGACTATGTAC 58.966 42.308 0.00 0.00 44.26 2.90
2254 2330 6.527057 AGTGTCCAAGTAAGACTATGTACC 57.473 41.667 0.00 0.00 35.21 3.34
2255 2331 5.421374 AGTGTCCAAGTAAGACTATGTACCC 59.579 44.000 0.00 0.00 35.21 3.69
2256 2332 5.186409 GTGTCCAAGTAAGACTATGTACCCA 59.814 44.000 0.00 0.00 35.21 4.51
2257 2333 5.962031 TGTCCAAGTAAGACTATGTACCCAT 59.038 40.000 0.00 0.00 35.21 4.00
2258 2334 6.127168 TGTCCAAGTAAGACTATGTACCCATG 60.127 42.308 0.00 0.00 35.21 3.66
2259 2335 5.057149 CCAAGTAAGACTATGTACCCATGC 58.943 45.833 0.00 0.00 32.29 4.06
2260 2336 5.396324 CCAAGTAAGACTATGTACCCATGCA 60.396 44.000 0.00 0.00 32.29 3.96
2261 2337 6.291377 CAAGTAAGACTATGTACCCATGCAT 58.709 40.000 0.00 0.00 35.12 3.96
2262 2338 6.102897 AGTAAGACTATGTACCCATGCATC 57.897 41.667 0.00 0.00 32.77 3.91
2263 2339 5.602561 AGTAAGACTATGTACCCATGCATCA 59.397 40.000 0.00 0.00 32.77 3.07
2264 2340 4.342862 AGACTATGTACCCATGCATCAC 57.657 45.455 0.00 0.00 32.77 3.06
2265 2341 3.711190 AGACTATGTACCCATGCATCACA 59.289 43.478 0.00 0.00 32.77 3.58
2266 2342 4.164030 AGACTATGTACCCATGCATCACAA 59.836 41.667 0.00 0.00 32.77 3.33
2267 2343 4.454678 ACTATGTACCCATGCATCACAAG 58.545 43.478 0.00 2.97 32.77 3.16
2268 2344 3.650281 ATGTACCCATGCATCACAAGA 57.350 42.857 0.00 0.00 0.00 3.02
2269 2345 3.650281 TGTACCCATGCATCACAAGAT 57.350 42.857 0.00 0.00 33.87 2.40
2270 2346 3.544684 TGTACCCATGCATCACAAGATC 58.455 45.455 0.00 0.00 30.20 2.75
2271 2347 2.812836 ACCCATGCATCACAAGATCA 57.187 45.000 0.00 0.00 30.20 2.92
2272 2348 3.308035 ACCCATGCATCACAAGATCAT 57.692 42.857 0.00 0.00 30.20 2.45
2273 2349 3.638860 ACCCATGCATCACAAGATCATT 58.361 40.909 0.00 0.00 30.20 2.57
2274 2350 4.028131 ACCCATGCATCACAAGATCATTT 58.972 39.130 0.00 0.00 30.20 2.32
2275 2351 4.142026 ACCCATGCATCACAAGATCATTTG 60.142 41.667 0.00 0.00 30.20 2.32
2276 2352 4.098807 CCCATGCATCACAAGATCATTTGA 59.901 41.667 0.00 0.00 30.20 2.69
2277 2353 5.221441 CCCATGCATCACAAGATCATTTGAT 60.221 40.000 0.00 0.00 37.51 2.57
2288 2364 4.660789 GATCATTTGATCTTGGGTTGGG 57.339 45.455 12.30 0.00 45.60 4.12
2289 2365 3.541242 TCATTTGATCTTGGGTTGGGT 57.459 42.857 0.00 0.00 0.00 4.51
2290 2366 3.164268 TCATTTGATCTTGGGTTGGGTG 58.836 45.455 0.00 0.00 0.00 4.61
2291 2367 2.008242 TTTGATCTTGGGTTGGGTGG 57.992 50.000 0.00 0.00 0.00 4.61
2292 2368 0.541764 TTGATCTTGGGTTGGGTGGC 60.542 55.000 0.00 0.00 0.00 5.01
2293 2369 2.035626 ATCTTGGGTTGGGTGGCG 59.964 61.111 0.00 0.00 0.00 5.69
2294 2370 4.966787 TCTTGGGTTGGGTGGCGC 62.967 66.667 0.00 0.00 0.00 6.53
2295 2371 4.974721 CTTGGGTTGGGTGGCGCT 62.975 66.667 7.64 0.00 0.00 5.92
2296 2372 3.561120 CTTGGGTTGGGTGGCGCTA 62.561 63.158 7.64 0.00 0.00 4.26
2297 2373 2.837031 CTTGGGTTGGGTGGCGCTAT 62.837 60.000 7.64 0.00 0.00 2.97
2298 2374 2.516225 GGGTTGGGTGGCGCTATC 60.516 66.667 7.64 0.00 0.00 2.08
2299 2375 2.895372 GGTTGGGTGGCGCTATCG 60.895 66.667 7.64 0.00 39.07 2.92
2300 2376 2.125269 GTTGGGTGGCGCTATCGT 60.125 61.111 7.64 0.00 38.14 3.73
2301 2377 1.743995 GTTGGGTGGCGCTATCGTT 60.744 57.895 7.64 0.00 38.14 3.85
2302 2378 1.743623 TTGGGTGGCGCTATCGTTG 60.744 57.895 7.64 0.00 38.14 4.10
2303 2379 2.125269 GGGTGGCGCTATCGTTGT 60.125 61.111 7.64 0.00 38.14 3.32
2304 2380 2.461110 GGGTGGCGCTATCGTTGTG 61.461 63.158 7.64 0.00 38.14 3.33
2305 2381 1.740296 GGTGGCGCTATCGTTGTGT 60.740 57.895 7.64 0.00 38.14 3.72
2306 2382 1.693083 GGTGGCGCTATCGTTGTGTC 61.693 60.000 7.64 0.00 38.14 3.67
2307 2383 1.011968 GTGGCGCTATCGTTGTGTCA 61.012 55.000 7.64 0.00 38.14 3.58
2308 2384 0.108377 TGGCGCTATCGTTGTGTCAT 60.108 50.000 7.64 0.00 38.14 3.06
2309 2385 1.006832 GGCGCTATCGTTGTGTCATT 58.993 50.000 7.64 0.00 38.14 2.57
2310 2386 1.267532 GGCGCTATCGTTGTGTCATTG 60.268 52.381 7.64 0.00 38.14 2.82
2311 2387 1.852077 GCGCTATCGTTGTGTCATTGC 60.852 52.381 0.00 0.00 38.14 3.56
2312 2388 1.589731 CGCTATCGTTGTGTCATTGCG 60.590 52.381 0.00 0.00 35.92 4.85
2313 2389 1.852077 GCTATCGTTGTGTCATTGCGC 60.852 52.381 0.00 0.00 0.00 6.09
2314 2390 1.393196 CTATCGTTGTGTCATTGCGCA 59.607 47.619 5.66 5.66 0.00 6.09
2315 2391 0.804364 ATCGTTGTGTCATTGCGCAT 59.196 45.000 12.75 0.00 0.00 4.73
2316 2392 0.165727 TCGTTGTGTCATTGCGCATC 59.834 50.000 12.75 3.01 0.00 3.91
2317 2393 0.110283 CGTTGTGTCATTGCGCATCA 60.110 50.000 12.75 5.93 0.00 3.07
2318 2394 1.662592 CGTTGTGTCATTGCGCATCAA 60.663 47.619 12.75 7.66 39.32 2.57
2319 2395 1.715519 GTTGTGTCATTGCGCATCAAC 59.284 47.619 12.75 15.37 37.53 3.18
2320 2396 0.240678 TGTGTCATTGCGCATCAACC 59.759 50.000 12.75 4.74 37.53 3.77
2321 2397 0.523072 GTGTCATTGCGCATCAACCT 59.477 50.000 12.75 0.00 37.53 3.50
2322 2398 1.737236 GTGTCATTGCGCATCAACCTA 59.263 47.619 12.75 0.00 37.53 3.08
2323 2399 2.009051 TGTCATTGCGCATCAACCTAG 58.991 47.619 12.75 0.00 37.53 3.02
2324 2400 1.331756 GTCATTGCGCATCAACCTAGG 59.668 52.381 12.75 7.41 37.53 3.02
2325 2401 0.029834 CATTGCGCATCAACCTAGGC 59.970 55.000 12.75 0.00 37.53 3.93
2326 2402 1.103398 ATTGCGCATCAACCTAGGCC 61.103 55.000 12.75 0.00 37.53 5.19
2327 2403 2.124736 GCGCATCAACCTAGGCCA 60.125 61.111 9.30 0.00 0.00 5.36
2328 2404 1.748879 GCGCATCAACCTAGGCCAA 60.749 57.895 9.30 0.00 0.00 4.52
2329 2405 1.103398 GCGCATCAACCTAGGCCAAT 61.103 55.000 9.30 0.00 0.00 3.16
2330 2406 1.813862 GCGCATCAACCTAGGCCAATA 60.814 52.381 9.30 0.00 0.00 1.90
2331 2407 2.783135 CGCATCAACCTAGGCCAATAT 58.217 47.619 9.30 0.00 0.00 1.28
2332 2408 3.149196 CGCATCAACCTAGGCCAATATT 58.851 45.455 9.30 0.00 0.00 1.28
2333 2409 3.189287 CGCATCAACCTAGGCCAATATTC 59.811 47.826 9.30 0.00 0.00 1.75
2334 2410 3.507622 GCATCAACCTAGGCCAATATTCC 59.492 47.826 9.30 0.00 0.00 3.01
2335 2411 4.728772 CATCAACCTAGGCCAATATTCCA 58.271 43.478 9.30 0.00 0.00 3.53
2336 2412 4.164843 TCAACCTAGGCCAATATTCCAC 57.835 45.455 9.30 0.00 0.00 4.02
2337 2413 3.117663 TCAACCTAGGCCAATATTCCACC 60.118 47.826 9.30 0.00 0.00 4.61
2338 2414 2.789219 ACCTAGGCCAATATTCCACCT 58.211 47.619 9.30 5.89 34.42 4.00
2339 2415 3.131252 ACCTAGGCCAATATTCCACCTT 58.869 45.455 9.30 0.00 31.79 3.50
2340 2416 3.531814 ACCTAGGCCAATATTCCACCTTT 59.468 43.478 9.30 0.00 31.79 3.11
2341 2417 4.145052 CCTAGGCCAATATTCCACCTTTC 58.855 47.826 5.01 0.00 31.79 2.62
2342 2418 3.032265 AGGCCAATATTCCACCTTTCC 57.968 47.619 5.01 0.00 0.00 3.13
2343 2419 2.587307 AGGCCAATATTCCACCTTTCCT 59.413 45.455 5.01 0.00 0.00 3.36
2344 2420 2.695147 GGCCAATATTCCACCTTTCCTG 59.305 50.000 0.00 0.00 0.00 3.86
2345 2421 2.695147 GCCAATATTCCACCTTTCCTGG 59.305 50.000 0.00 0.00 0.00 4.45
2346 2422 3.881713 GCCAATATTCCACCTTTCCTGGT 60.882 47.826 0.00 0.00 41.77 4.00
2347 2423 4.630184 GCCAATATTCCACCTTTCCTGGTA 60.630 45.833 0.00 0.00 38.45 3.25
2348 2424 5.705400 CCAATATTCCACCTTTCCTGGTAT 58.295 41.667 0.00 0.00 38.45 2.73
2349 2425 6.136155 CCAATATTCCACCTTTCCTGGTATT 58.864 40.000 0.00 0.00 38.45 1.89
2350 2426 6.265422 CCAATATTCCACCTTTCCTGGTATTC 59.735 42.308 0.00 0.00 38.45 1.75
2351 2427 3.732048 TTCCACCTTTCCTGGTATTCC 57.268 47.619 0.00 0.00 38.45 3.01
2352 2428 2.638325 TCCACCTTTCCTGGTATTCCA 58.362 47.619 0.00 0.00 38.45 3.53
2353 2429 3.197983 TCCACCTTTCCTGGTATTCCAT 58.802 45.455 0.00 0.00 43.43 3.41
2354 2430 3.202151 TCCACCTTTCCTGGTATTCCATC 59.798 47.826 0.00 0.00 43.43 3.51
2355 2431 3.555966 CACCTTTCCTGGTATTCCATCC 58.444 50.000 0.00 0.00 43.43 3.51
2356 2432 2.172717 ACCTTTCCTGGTATTCCATCCG 59.827 50.000 0.00 0.00 43.43 4.18
2357 2433 2.172717 CCTTTCCTGGTATTCCATCCGT 59.827 50.000 0.00 0.00 43.43 4.69
2358 2434 3.389983 CCTTTCCTGGTATTCCATCCGTA 59.610 47.826 0.00 0.00 43.43 4.02
2359 2435 4.141574 CCTTTCCTGGTATTCCATCCGTAA 60.142 45.833 0.00 0.00 43.43 3.18
2360 2436 5.433526 CTTTCCTGGTATTCCATCCGTAAA 58.566 41.667 0.00 0.00 43.43 2.01
2361 2437 4.682778 TCCTGGTATTCCATCCGTAAAG 57.317 45.455 0.00 0.00 43.43 1.85
2362 2438 4.291792 TCCTGGTATTCCATCCGTAAAGA 58.708 43.478 0.00 0.00 43.43 2.52
2363 2439 4.717778 TCCTGGTATTCCATCCGTAAAGAA 59.282 41.667 0.00 0.00 43.43 2.52
2364 2440 5.190132 TCCTGGTATTCCATCCGTAAAGAAA 59.810 40.000 0.00 0.00 43.43 2.52
2365 2441 6.062095 CCTGGTATTCCATCCGTAAAGAAAT 58.938 40.000 0.00 0.00 43.43 2.17
2366 2442 7.071447 TCCTGGTATTCCATCCGTAAAGAAATA 59.929 37.037 0.00 0.00 43.43 1.40
2367 2443 7.717875 CCTGGTATTCCATCCGTAAAGAAATAA 59.282 37.037 0.00 0.00 43.43 1.40
2368 2444 8.671384 TGGTATTCCATCCGTAAAGAAATAAG 57.329 34.615 0.00 0.00 39.03 1.73
2369 2445 8.487848 TGGTATTCCATCCGTAAAGAAATAAGA 58.512 33.333 0.00 0.00 39.03 2.10
2370 2446 8.989980 GGTATTCCATCCGTAAAGAAATAAGAG 58.010 37.037 0.00 0.00 0.00 2.85
2371 2447 9.760077 GTATTCCATCCGTAAAGAAATAAGAGA 57.240 33.333 0.00 0.00 0.00 3.10
2373 2449 8.888579 TTCCATCCGTAAAGAAATAAGAGATC 57.111 34.615 0.00 0.00 0.00 2.75
2374 2450 8.018537 TCCATCCGTAAAGAAATAAGAGATCA 57.981 34.615 0.00 0.00 0.00 2.92
2375 2451 8.651389 TCCATCCGTAAAGAAATAAGAGATCAT 58.349 33.333 0.00 0.00 0.00 2.45
2376 2452 9.277783 CCATCCGTAAAGAAATAAGAGATCATT 57.722 33.333 0.00 0.00 0.00 2.57
2417 2493 4.996788 TCTAAACGATCAAGGGAGTACC 57.003 45.455 0.00 0.00 40.67 3.34
2418 2494 5.302313 GATCTAAACGATCAAGGGAGTACCT 59.698 44.000 0.00 0.00 46.35 3.08
2419 2495 6.183360 GATCTAAACGATCAAGGGAGTACCTT 60.183 42.308 0.00 0.00 46.88 3.50
2420 2496 7.633116 GATCTAAACGATCAAGGGAGTACCTTT 60.633 40.741 2.95 0.00 46.64 3.11
2434 2510 8.859236 GGGAGTACCTTTTAGTTAAAACATCT 57.141 34.615 0.00 0.00 35.85 2.90
2435 2511 9.293404 GGGAGTACCTTTTAGTTAAAACATCTT 57.707 33.333 0.00 0.00 35.85 2.40
2480 2556 8.453238 TTTTCATTCTACTAGACTAGATCGCT 57.547 34.615 16.55 0.00 0.00 4.93
2481 2557 8.453238 TTTCATTCTACTAGACTAGATCGCTT 57.547 34.615 16.55 0.00 0.00 4.68
2482 2558 7.428282 TCATTCTACTAGACTAGATCGCTTG 57.572 40.000 16.55 6.62 0.00 4.01
2483 2559 6.428465 TCATTCTACTAGACTAGATCGCTTGG 59.572 42.308 16.55 0.00 0.00 3.61
2484 2560 4.643463 TCTACTAGACTAGATCGCTTGGG 58.357 47.826 16.55 0.00 0.00 4.12
2485 2561 2.588620 ACTAGACTAGATCGCTTGGGG 58.411 52.381 16.55 0.00 0.00 4.96
2486 2562 2.175069 ACTAGACTAGATCGCTTGGGGA 59.825 50.000 16.55 0.00 0.00 4.81
2487 2563 2.390225 AGACTAGATCGCTTGGGGAT 57.610 50.000 0.00 0.00 37.92 3.85
2488 2564 1.967066 AGACTAGATCGCTTGGGGATG 59.033 52.381 0.00 0.00 35.38 3.51
2489 2565 1.001406 GACTAGATCGCTTGGGGATGG 59.999 57.143 0.00 0.00 35.38 3.51
2490 2566 0.322975 CTAGATCGCTTGGGGATGGG 59.677 60.000 1.94 0.00 35.38 4.00
2491 2567 0.105194 TAGATCGCTTGGGGATGGGA 60.105 55.000 1.94 0.00 35.38 4.37
2492 2568 0.988145 AGATCGCTTGGGGATGGGAA 60.988 55.000 1.94 0.00 35.38 3.97
2493 2569 0.819666 GATCGCTTGGGGATGGGAAC 60.820 60.000 1.94 0.00 35.38 3.62
2494 2570 1.281925 ATCGCTTGGGGATGGGAACT 61.282 55.000 0.00 0.00 33.98 3.01
2495 2571 1.000896 CGCTTGGGGATGGGAACTT 60.001 57.895 0.00 0.00 0.00 2.66
2496 2572 1.315257 CGCTTGGGGATGGGAACTTG 61.315 60.000 0.00 0.00 0.00 3.16
2497 2573 0.972471 GCTTGGGGATGGGAACTTGG 60.972 60.000 0.00 0.00 0.00 3.61
2498 2574 0.409484 CTTGGGGATGGGAACTTGGT 59.591 55.000 0.00 0.00 0.00 3.67
2499 2575 0.114168 TTGGGGATGGGAACTTGGTG 59.886 55.000 0.00 0.00 0.00 4.17
2500 2576 1.682344 GGGGATGGGAACTTGGTGC 60.682 63.158 0.00 0.00 0.00 5.01
2501 2577 1.384191 GGGATGGGAACTTGGTGCT 59.616 57.895 0.00 0.00 0.00 4.40
2502 2578 0.681243 GGGATGGGAACTTGGTGCTC 60.681 60.000 0.00 0.00 0.00 4.26
2503 2579 0.329596 GGATGGGAACTTGGTGCTCT 59.670 55.000 0.00 0.00 0.00 4.09
2504 2580 1.680249 GGATGGGAACTTGGTGCTCTC 60.680 57.143 0.00 0.00 0.00 3.20
2505 2581 0.036010 ATGGGAACTTGGTGCTCTCG 60.036 55.000 0.00 0.00 0.00 4.04
2506 2582 1.376037 GGGAACTTGGTGCTCTCGG 60.376 63.158 0.00 0.00 0.00 4.63
2507 2583 1.376037 GGAACTTGGTGCTCTCGGG 60.376 63.158 0.00 0.00 0.00 5.14
2508 2584 1.371558 GAACTTGGTGCTCTCGGGT 59.628 57.895 0.00 0.00 0.00 5.28
2509 2585 0.606604 GAACTTGGTGCTCTCGGGTA 59.393 55.000 0.00 0.00 0.00 3.69
2510 2586 0.320697 AACTTGGTGCTCTCGGGTAC 59.679 55.000 0.00 0.00 0.00 3.34
2523 2599 4.290023 GGTACCCTCGCACCCTAT 57.710 61.111 0.00 0.00 0.00 2.57
2524 2600 1.746517 GGTACCCTCGCACCCTATG 59.253 63.158 0.00 0.00 0.00 2.23
2525 2601 1.047034 GGTACCCTCGCACCCTATGT 61.047 60.000 0.00 0.00 0.00 2.29
2533 2609 3.995074 CACCCTATGTGCGCCAAA 58.005 55.556 4.18 0.00 38.34 3.28
2534 2610 2.262183 CACCCTATGTGCGCCAAAA 58.738 52.632 4.18 0.00 38.34 2.44
2535 2611 0.600557 CACCCTATGTGCGCCAAAAA 59.399 50.000 4.18 0.00 38.34 1.94
2589 2665 9.995003 TTTTTAAAGCAAACATGATCAGGTATT 57.005 25.926 14.25 7.65 0.00 1.89
2590 2666 8.984891 TTTAAAGCAAACATGATCAGGTATTG 57.015 30.769 14.25 18.61 0.00 1.90
2591 2667 6.594788 AAAGCAAACATGATCAGGTATTGT 57.405 33.333 23.44 12.74 0.00 2.71
2592 2668 5.571784 AGCAAACATGATCAGGTATTGTG 57.428 39.130 23.44 16.74 0.00 3.33
2593 2669 4.107622 GCAAACATGATCAGGTATTGTGC 58.892 43.478 23.44 20.50 0.00 4.57
2594 2670 4.142315 GCAAACATGATCAGGTATTGTGCT 60.142 41.667 23.44 5.42 0.00 4.40
2595 2671 5.575957 CAAACATGATCAGGTATTGTGCTC 58.424 41.667 14.25 0.00 0.00 4.26
2596 2672 3.813443 ACATGATCAGGTATTGTGCTCC 58.187 45.455 12.06 0.00 0.00 4.70
2597 2673 3.457380 ACATGATCAGGTATTGTGCTCCT 59.543 43.478 12.06 0.00 0.00 3.69
2598 2674 4.655649 ACATGATCAGGTATTGTGCTCCTA 59.344 41.667 12.06 0.00 0.00 2.94
2599 2675 5.309020 ACATGATCAGGTATTGTGCTCCTAT 59.691 40.000 12.06 0.00 0.00 2.57
2600 2676 5.894298 TGATCAGGTATTGTGCTCCTATT 57.106 39.130 0.00 0.00 0.00 1.73
2601 2677 6.994421 TGATCAGGTATTGTGCTCCTATTA 57.006 37.500 0.00 0.00 0.00 0.98
2602 2678 7.373617 TGATCAGGTATTGTGCTCCTATTAA 57.626 36.000 0.00 0.00 0.00 1.40
2603 2679 7.801104 TGATCAGGTATTGTGCTCCTATTAAA 58.199 34.615 0.00 0.00 0.00 1.52
2604 2680 8.439971 TGATCAGGTATTGTGCTCCTATTAAAT 58.560 33.333 0.00 0.00 0.00 1.40
2605 2681 8.627208 ATCAGGTATTGTGCTCCTATTAAATG 57.373 34.615 0.00 0.00 0.00 2.32
2606 2682 7.573710 TCAGGTATTGTGCTCCTATTAAATGT 58.426 34.615 0.00 0.00 0.00 2.71
2607 2683 8.052748 TCAGGTATTGTGCTCCTATTAAATGTT 58.947 33.333 0.00 0.00 0.00 2.71
2608 2684 8.686334 CAGGTATTGTGCTCCTATTAAATGTTT 58.314 33.333 0.00 0.00 0.00 2.83
2609 2685 8.686334 AGGTATTGTGCTCCTATTAAATGTTTG 58.314 33.333 0.00 0.00 0.00 2.93
2610 2686 7.920682 GGTATTGTGCTCCTATTAAATGTTTGG 59.079 37.037 0.00 0.00 0.00 3.28
2611 2687 7.716799 ATTGTGCTCCTATTAAATGTTTGGA 57.283 32.000 0.00 0.00 0.00 3.53
2612 2688 6.509418 TGTGCTCCTATTAAATGTTTGGAC 57.491 37.500 0.00 0.00 0.00 4.02
2613 2689 6.007076 TGTGCTCCTATTAAATGTTTGGACA 58.993 36.000 0.00 0.00 40.71 4.02
2614 2690 6.491745 TGTGCTCCTATTAAATGTTTGGACAA 59.508 34.615 0.00 0.00 39.66 3.18
2615 2691 7.029563 GTGCTCCTATTAAATGTTTGGACAAG 58.970 38.462 0.00 0.00 39.66 3.16
2616 2692 6.945435 TGCTCCTATTAAATGTTTGGACAAGA 59.055 34.615 0.00 0.00 39.66 3.02
2617 2693 7.450014 TGCTCCTATTAAATGTTTGGACAAGAA 59.550 33.333 0.00 0.00 39.66 2.52
2618 2694 8.303876 GCTCCTATTAAATGTTTGGACAAGAAA 58.696 33.333 0.00 0.00 39.66 2.52
2634 2710 9.753674 TGGACAAGAAATTATTCCTTATTGACT 57.246 29.630 0.00 0.00 36.12 3.41
2638 2714 9.722056 CAAGAAATTATTCCTTATTGACTTCGG 57.278 33.333 0.00 0.00 36.12 4.30
2639 2715 8.451908 AGAAATTATTCCTTATTGACTTCGGG 57.548 34.615 0.00 0.00 36.12 5.14
2640 2716 7.502561 AGAAATTATTCCTTATTGACTTCGGGG 59.497 37.037 0.00 0.00 36.12 5.73
2641 2717 5.703730 TTATTCCTTATTGACTTCGGGGT 57.296 39.130 0.00 0.00 0.00 4.95
2642 2718 6.811634 TTATTCCTTATTGACTTCGGGGTA 57.188 37.500 0.00 0.00 0.00 3.69
2643 2719 5.703730 ATTCCTTATTGACTTCGGGGTAA 57.296 39.130 0.00 0.00 0.00 2.85
2644 2720 5.502089 TTCCTTATTGACTTCGGGGTAAA 57.498 39.130 0.00 0.00 0.00 2.01
2645 2721 5.502089 TCCTTATTGACTTCGGGGTAAAA 57.498 39.130 0.00 0.00 0.00 1.52
2646 2722 5.878627 TCCTTATTGACTTCGGGGTAAAAA 58.121 37.500 0.00 0.00 0.00 1.94
2647 2723 6.486941 TCCTTATTGACTTCGGGGTAAAAAT 58.513 36.000 0.00 0.00 0.00 1.82
2648 2724 6.376018 TCCTTATTGACTTCGGGGTAAAAATG 59.624 38.462 0.00 0.00 0.00 2.32
2649 2725 6.376018 CCTTATTGACTTCGGGGTAAAAATGA 59.624 38.462 0.00 0.00 0.00 2.57
2650 2726 5.638596 ATTGACTTCGGGGTAAAAATGAC 57.361 39.130 0.00 0.00 0.00 3.06
2651 2727 4.088056 TGACTTCGGGGTAAAAATGACA 57.912 40.909 0.00 0.00 0.00 3.58
2652 2728 4.462133 TGACTTCGGGGTAAAAATGACAA 58.538 39.130 0.00 0.00 0.00 3.18
2653 2729 4.888239 TGACTTCGGGGTAAAAATGACAAA 59.112 37.500 0.00 0.00 0.00 2.83
2654 2730 5.536916 TGACTTCGGGGTAAAAATGACAAAT 59.463 36.000 0.00 0.00 0.00 2.32
2655 2731 6.041069 TGACTTCGGGGTAAAAATGACAAATT 59.959 34.615 0.00 0.00 0.00 1.82
2656 2732 6.822442 ACTTCGGGGTAAAAATGACAAATTT 58.178 32.000 0.00 0.00 0.00 1.82
2657 2733 7.953752 ACTTCGGGGTAAAAATGACAAATTTA 58.046 30.769 0.00 0.00 0.00 1.40
2658 2734 8.590204 ACTTCGGGGTAAAAATGACAAATTTAT 58.410 29.630 0.00 0.00 0.00 1.40
2659 2735 8.764524 TTCGGGGTAAAAATGACAAATTTATG 57.235 30.769 0.00 0.00 0.00 1.90
2660 2736 8.123639 TCGGGGTAAAAATGACAAATTTATGA 57.876 30.769 0.00 0.00 0.00 2.15
2661 2737 8.030106 TCGGGGTAAAAATGACAAATTTATGAC 58.970 33.333 0.00 0.00 0.00 3.06
2662 2738 7.815068 CGGGGTAAAAATGACAAATTTATGACA 59.185 33.333 0.00 0.00 0.00 3.58
2663 2739 9.495572 GGGGTAAAAATGACAAATTTATGACAA 57.504 29.630 0.00 0.00 0.00 3.18
2683 2759 8.975410 TGACAACAATATAGTGTGTACAGTAC 57.025 34.615 6.59 3.49 34.88 2.73
2684 2760 8.799367 TGACAACAATATAGTGTGTACAGTACT 58.201 33.333 6.59 14.93 34.88 2.73
2685 2761 9.635520 GACAACAATATAGTGTGTACAGTACTT 57.364 33.333 15.57 8.28 34.88 2.24
2686 2762 9.419297 ACAACAATATAGTGTGTACAGTACTTG 57.581 33.333 15.57 15.47 34.88 3.16
2687 2763 9.419297 CAACAATATAGTGTGTACAGTACTTGT 57.581 33.333 15.57 16.28 39.76 3.16
2695 2771 8.749026 AGTGTGTACAGTACTTGTATATAGCT 57.251 34.615 12.07 0.00 43.79 3.32
2696 2772 9.186837 AGTGTGTACAGTACTTGTATATAGCTT 57.813 33.333 12.07 0.00 43.79 3.74
2697 2773 9.798994 GTGTGTACAGTACTTGTATATAGCTTT 57.201 33.333 12.07 0.00 43.79 3.51
2723 2799 7.701539 TTTTTAATCTTTGAGCTAGGATGCA 57.298 32.000 0.00 0.00 34.99 3.96
2724 2800 7.701539 TTTTAATCTTTGAGCTAGGATGCAA 57.298 32.000 0.00 0.00 34.99 4.08
2725 2801 7.886629 TTTAATCTTTGAGCTAGGATGCAAT 57.113 32.000 0.00 0.00 34.99 3.56
2726 2802 5.769484 AATCTTTGAGCTAGGATGCAATG 57.231 39.130 0.00 0.00 34.99 2.82
2727 2803 4.492494 TCTTTGAGCTAGGATGCAATGA 57.508 40.909 0.00 0.00 34.99 2.57
2728 2804 4.847198 TCTTTGAGCTAGGATGCAATGAA 58.153 39.130 0.00 0.00 34.99 2.57
2729 2805 5.255687 TCTTTGAGCTAGGATGCAATGAAA 58.744 37.500 0.00 0.00 34.99 2.69
2730 2806 5.356190 TCTTTGAGCTAGGATGCAATGAAAG 59.644 40.000 0.00 0.00 34.99 2.62
2731 2807 4.226427 TGAGCTAGGATGCAATGAAAGT 57.774 40.909 0.00 0.00 34.99 2.66
2732 2808 4.194640 TGAGCTAGGATGCAATGAAAGTC 58.805 43.478 0.00 0.00 34.99 3.01
2733 2809 4.194640 GAGCTAGGATGCAATGAAAGTCA 58.805 43.478 0.00 0.00 34.99 3.41
2734 2810 4.789807 AGCTAGGATGCAATGAAAGTCAT 58.210 39.130 0.00 0.00 39.09 3.06
2736 2812 5.298777 AGCTAGGATGCAATGAAAGTCATTC 59.701 40.000 0.47 0.00 43.03 2.67
2737 2813 5.298777 GCTAGGATGCAATGAAAGTCATTCT 59.701 40.000 0.47 0.00 43.03 2.40
2738 2814 5.831702 AGGATGCAATGAAAGTCATTCTC 57.168 39.130 0.47 0.01 43.03 2.87
2739 2815 5.507637 AGGATGCAATGAAAGTCATTCTCT 58.492 37.500 0.47 0.00 43.03 3.10
2740 2816 5.357314 AGGATGCAATGAAAGTCATTCTCTG 59.643 40.000 0.47 0.00 43.03 3.35
2741 2817 5.356190 GGATGCAATGAAAGTCATTCTCTGA 59.644 40.000 0.47 0.00 43.03 3.27
2760 2836 8.882415 TCTCTGACAAAAGTTTTTATACGAGT 57.118 30.769 0.00 0.00 0.00 4.18
2761 2837 9.970395 TCTCTGACAAAAGTTTTTATACGAGTA 57.030 29.630 0.00 0.00 0.00 2.59
2763 2839 9.531942 TCTGACAAAAGTTTTTATACGAGTACA 57.468 29.630 0.00 0.00 0.00 2.90
2848 2924 5.703978 TTTTTGCATATATATGGTGCGCT 57.296 34.783 21.50 0.00 41.61 5.92
2849 2925 4.683501 TTTGCATATATATGGTGCGCTG 57.316 40.909 21.50 0.00 41.61 5.18
2850 2926 2.631267 TGCATATATATGGTGCGCTGG 58.369 47.619 21.50 0.00 41.61 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 93 4.154737 TGCAGTGAAAAGATTCATCTTCGG 59.845 41.667 2.47 0.00 46.67 4.30
93 95 7.485277 CAGATTGCAGTGAAAAGATTCATCTTC 59.515 37.037 2.47 0.00 46.67 2.87
126 128 6.867662 ATCAATTTCTCTCGTGTTTTCTGT 57.132 33.333 0.00 0.00 0.00 3.41
211 219 9.970395 GATGGATTGCATGATCTACAAAATTAA 57.030 29.630 0.00 0.00 0.00 1.40
221 229 8.577296 CAGAAATTAAGATGGATTGCATGATCT 58.423 33.333 0.00 0.00 0.00 2.75
378 387 0.947244 CCCGCTATTTCATGGAGTGC 59.053 55.000 0.00 0.00 0.00 4.40
432 441 2.109387 CGGGTGTCGTTCCAACCA 59.891 61.111 7.22 0.00 42.70 3.67
602 613 6.744112 ACTCAAGTATGATAGCTGCTAGTTC 58.256 40.000 15.41 9.19 34.37 3.01
769 800 0.179702 TCATCCATCCAGCTCAGTGC 59.820 55.000 0.00 0.00 43.29 4.40
770 801 2.286872 GTTCATCCATCCAGCTCAGTG 58.713 52.381 0.00 0.00 0.00 3.66
771 802 1.211457 GGTTCATCCATCCAGCTCAGT 59.789 52.381 0.00 0.00 35.97 3.41
813 852 1.732417 CGGGTCGAGGGTAGTTAGCC 61.732 65.000 0.00 0.00 44.02 3.93
913 953 0.467290 GGGTGCCTTTGGACACTGAA 60.467 55.000 9.63 0.00 36.99 3.02
943 989 0.882042 GGACTGTGGCAGTGTCAGTG 60.882 60.000 12.56 3.06 45.44 3.66
948 994 0.839946 AAAGAGGACTGTGGCAGTGT 59.160 50.000 6.50 0.00 45.44 3.55
959 1005 4.616373 CGAAGTGGTAGAGACAAAGAGGAC 60.616 50.000 0.00 0.00 0.00 3.85
981 1027 1.174783 TCCTTCCGAAGAACTCCTCG 58.825 55.000 9.87 0.00 0.00 4.63
1163 1209 0.385974 CAGCAAAAGTACGTGGCAGC 60.386 55.000 0.00 0.00 0.00 5.25
1166 1212 1.804151 TGATCAGCAAAAGTACGTGGC 59.196 47.619 0.00 0.00 0.00 5.01
1187 1233 2.183300 GATACACGGCGTGCCTCA 59.817 61.111 37.21 21.21 36.98 3.86
1197 1243 4.016113 TGTTGAGATCGACAGATACACG 57.984 45.455 0.00 0.00 37.19 4.49
1361 1410 4.612412 GGGTCGACGGTGTTGGCA 62.612 66.667 9.92 0.00 0.00 4.92
1412 1461 4.753233 AGCAGATTATTATCTAGCGGCAG 58.247 43.478 1.45 0.00 39.11 4.85
1474 1528 6.647067 GCAGAGTTACAGTTAGAACAGATTGT 59.353 38.462 0.00 0.00 0.00 2.71
1476 1530 6.759272 TGCAGAGTTACAGTTAGAACAGATT 58.241 36.000 0.00 0.00 0.00 2.40
1478 1532 5.784578 TGCAGAGTTACAGTTAGAACAGA 57.215 39.130 0.00 0.00 0.00 3.41
1479 1533 6.309980 CAGATGCAGAGTTACAGTTAGAACAG 59.690 42.308 0.00 0.00 0.00 3.16
1480 1534 6.159293 CAGATGCAGAGTTACAGTTAGAACA 58.841 40.000 0.00 0.00 0.00 3.18
1481 1535 5.578727 CCAGATGCAGAGTTACAGTTAGAAC 59.421 44.000 0.00 0.00 0.00 3.01
1482 1536 5.480422 TCCAGATGCAGAGTTACAGTTAGAA 59.520 40.000 0.00 0.00 0.00 2.10
1484 1538 5.105752 GTCCAGATGCAGAGTTACAGTTAG 58.894 45.833 0.00 0.00 0.00 2.34
1485 1539 4.380550 CGTCCAGATGCAGAGTTACAGTTA 60.381 45.833 0.00 0.00 0.00 2.24
1486 1540 3.615110 CGTCCAGATGCAGAGTTACAGTT 60.615 47.826 0.00 0.00 0.00 3.16
1488 1542 2.094494 ACGTCCAGATGCAGAGTTACAG 60.094 50.000 0.00 0.00 0.00 2.74
1505 1568 2.733218 TAGCTGCGCACACACGTC 60.733 61.111 5.66 0.00 34.88 4.34
1605 1668 0.615331 ATCTTGCTGCCGAAGAAGGA 59.385 50.000 6.52 0.00 33.22 3.36
1885 1948 2.199236 CTTATTTAGCCACCGACGACC 58.801 52.381 0.00 0.00 0.00 4.79
1979 2054 2.547642 GGCAAGCAAACACATAAAGGCA 60.548 45.455 0.00 0.00 0.00 4.75
1995 2070 2.190161 CATGCATCATCAAACGGCAAG 58.810 47.619 0.00 0.00 38.08 4.01
2072 2147 9.004717 TCAAATTATTCTTACATCACCAACGAA 57.995 29.630 0.00 0.00 0.00 3.85
2121 2197 5.003692 AGGTAGCGATCATGCATACTATG 57.996 43.478 0.00 0.00 37.31 2.23
2162 2238 2.962421 ACAAAGATCCCCGCAAGAAAAA 59.038 40.909 0.00 0.00 43.02 1.94
2163 2239 2.593026 ACAAAGATCCCCGCAAGAAAA 58.407 42.857 0.00 0.00 43.02 2.29
2164 2240 2.286365 ACAAAGATCCCCGCAAGAAA 57.714 45.000 0.00 0.00 43.02 2.52
2165 2241 2.159382 GAACAAAGATCCCCGCAAGAA 58.841 47.619 0.00 0.00 43.02 2.52
2166 2242 1.073125 TGAACAAAGATCCCCGCAAGA 59.927 47.619 0.00 0.00 43.02 3.02
2167 2243 1.470098 CTGAACAAAGATCCCCGCAAG 59.530 52.381 0.00 0.00 0.00 4.01
2168 2244 1.202879 ACTGAACAAAGATCCCCGCAA 60.203 47.619 0.00 0.00 0.00 4.85
2169 2245 0.400213 ACTGAACAAAGATCCCCGCA 59.600 50.000 0.00 0.00 0.00 5.69
2170 2246 2.007608 GTACTGAACAAAGATCCCCGC 58.992 52.381 0.00 0.00 0.00 6.13
2171 2247 3.611766 AGTACTGAACAAAGATCCCCG 57.388 47.619 0.00 0.00 0.00 5.73
2172 2248 4.906618 TGAAGTACTGAACAAAGATCCCC 58.093 43.478 0.00 0.00 0.00 4.81
2173 2249 5.552178 ACTGAAGTACTGAACAAAGATCCC 58.448 41.667 0.00 0.00 0.00 3.85
2174 2250 8.779354 ATAACTGAAGTACTGAACAAAGATCC 57.221 34.615 0.00 0.00 0.00 3.36
2183 2259 9.188588 CGTGTCTTTTATAACTGAAGTACTGAA 57.811 33.333 0.00 0.00 0.00 3.02
2184 2260 8.570488 TCGTGTCTTTTATAACTGAAGTACTGA 58.430 33.333 0.00 0.00 0.00 3.41
2185 2261 8.738199 TCGTGTCTTTTATAACTGAAGTACTG 57.262 34.615 0.00 0.00 0.00 2.74
2186 2262 9.754382 TTTCGTGTCTTTTATAACTGAAGTACT 57.246 29.630 0.00 0.00 0.00 2.73
2189 2265 9.321562 TCTTTTCGTGTCTTTTATAACTGAAGT 57.678 29.630 0.00 0.00 0.00 3.01
2192 2268 9.706691 AGATCTTTTCGTGTCTTTTATAACTGA 57.293 29.630 0.00 0.00 0.00 3.41
2200 2276 9.057089 AGTCAATAAGATCTTTTCGTGTCTTTT 57.943 29.630 14.36 0.00 33.36 2.27
2201 2277 8.608844 AGTCAATAAGATCTTTTCGTGTCTTT 57.391 30.769 14.36 0.00 33.36 2.52
2202 2278 9.360093 CTAGTCAATAAGATCTTTTCGTGTCTT 57.640 33.333 14.36 0.00 35.32 3.01
2203 2279 7.976734 CCTAGTCAATAAGATCTTTTCGTGTCT 59.023 37.037 14.36 11.40 0.00 3.41
2204 2280 7.974501 TCCTAGTCAATAAGATCTTTTCGTGTC 59.025 37.037 14.36 5.17 0.00 3.67
2205 2281 7.837863 TCCTAGTCAATAAGATCTTTTCGTGT 58.162 34.615 14.36 0.00 0.00 4.49
2206 2282 8.703604 TTCCTAGTCAATAAGATCTTTTCGTG 57.296 34.615 14.36 7.10 0.00 4.35
2207 2283 8.532819 ACTTCCTAGTCAATAAGATCTTTTCGT 58.467 33.333 14.36 0.00 0.00 3.85
2208 2284 8.812329 CACTTCCTAGTCAATAAGATCTTTTCG 58.188 37.037 14.36 2.41 30.26 3.46
2209 2285 9.660180 ACACTTCCTAGTCAATAAGATCTTTTC 57.340 33.333 14.36 0.68 30.26 2.29
2210 2286 9.660180 GACACTTCCTAGTCAATAAGATCTTTT 57.340 33.333 14.36 2.41 34.93 2.27
2211 2287 8.261522 GGACACTTCCTAGTCAATAAGATCTTT 58.738 37.037 14.36 0.00 39.13 2.52
2212 2288 7.400339 TGGACACTTCCTAGTCAATAAGATCTT 59.600 37.037 13.56 13.56 43.31 2.40
2213 2289 6.897966 TGGACACTTCCTAGTCAATAAGATCT 59.102 38.462 0.00 0.00 43.31 2.75
2214 2290 7.113658 TGGACACTTCCTAGTCAATAAGATC 57.886 40.000 0.00 0.00 43.31 2.75
2215 2291 7.496346 TTGGACACTTCCTAGTCAATAAGAT 57.504 36.000 0.00 0.00 43.31 2.40
2216 2292 6.928348 TTGGACACTTCCTAGTCAATAAGA 57.072 37.500 0.00 0.00 43.31 2.10
2225 2301 5.986501 AGTCTTACTTGGACACTTCCTAG 57.013 43.478 1.19 1.19 46.92 3.02
2226 2302 6.952358 ACATAGTCTTACTTGGACACTTCCTA 59.048 38.462 0.00 0.00 43.31 2.94
2227 2303 5.780793 ACATAGTCTTACTTGGACACTTCCT 59.219 40.000 0.00 0.00 43.31 3.36
2228 2304 6.038997 ACATAGTCTTACTTGGACACTTCC 57.961 41.667 0.00 0.00 43.19 3.46
2229 2305 7.034397 GGTACATAGTCTTACTTGGACACTTC 58.966 42.308 0.00 0.00 36.29 3.01
2230 2306 6.070938 GGGTACATAGTCTTACTTGGACACTT 60.071 42.308 0.00 0.00 36.29 3.16
2231 2307 5.421374 GGGTACATAGTCTTACTTGGACACT 59.579 44.000 0.00 0.00 36.29 3.55
2232 2308 5.186409 TGGGTACATAGTCTTACTTGGACAC 59.814 44.000 0.00 0.00 36.29 3.67
2233 2309 5.335261 TGGGTACATAGTCTTACTTGGACA 58.665 41.667 0.00 0.00 36.29 4.02
2234 2310 5.927281 TGGGTACATAGTCTTACTTGGAC 57.073 43.478 0.00 0.00 0.00 4.02
2235 2311 5.163343 GCATGGGTACATAGTCTTACTTGGA 60.163 44.000 0.00 0.00 34.99 3.53
2236 2312 5.057149 GCATGGGTACATAGTCTTACTTGG 58.943 45.833 0.00 0.00 34.99 3.61
2237 2313 5.670485 TGCATGGGTACATAGTCTTACTTG 58.330 41.667 0.00 0.00 34.99 3.16
2238 2314 5.950544 TGCATGGGTACATAGTCTTACTT 57.049 39.130 0.00 0.00 34.99 2.24
2239 2315 5.602561 TGATGCATGGGTACATAGTCTTACT 59.397 40.000 2.46 0.00 34.99 2.24
2240 2316 5.696724 GTGATGCATGGGTACATAGTCTTAC 59.303 44.000 2.46 0.00 34.99 2.34
2241 2317 5.365314 TGTGATGCATGGGTACATAGTCTTA 59.635 40.000 2.46 0.00 34.99 2.10
2242 2318 4.164030 TGTGATGCATGGGTACATAGTCTT 59.836 41.667 2.46 0.00 34.99 3.01
2243 2319 3.711190 TGTGATGCATGGGTACATAGTCT 59.289 43.478 2.46 0.00 34.99 3.24
2244 2320 4.071961 TGTGATGCATGGGTACATAGTC 57.928 45.455 2.46 0.00 34.99 2.59
2245 2321 4.164030 TCTTGTGATGCATGGGTACATAGT 59.836 41.667 2.46 0.00 34.99 2.12
2246 2322 4.707105 TCTTGTGATGCATGGGTACATAG 58.293 43.478 2.46 5.24 34.99 2.23
2247 2323 4.769345 TCTTGTGATGCATGGGTACATA 57.231 40.909 2.46 0.00 34.99 2.29
2248 2324 3.650281 TCTTGTGATGCATGGGTACAT 57.350 42.857 2.46 0.00 37.99 2.29
2249 2325 3.054508 TGATCTTGTGATGCATGGGTACA 60.055 43.478 2.46 0.95 32.19 2.90
2250 2326 3.544684 TGATCTTGTGATGCATGGGTAC 58.455 45.455 2.46 0.00 32.19 3.34
2251 2327 3.929955 TGATCTTGTGATGCATGGGTA 57.070 42.857 2.46 0.00 32.19 3.69
2252 2328 2.812836 TGATCTTGTGATGCATGGGT 57.187 45.000 2.46 0.00 32.19 4.51
2253 2329 4.098807 TCAAATGATCTTGTGATGCATGGG 59.901 41.667 2.46 0.00 32.19 4.00
2254 2330 5.257082 TCAAATGATCTTGTGATGCATGG 57.743 39.130 2.46 0.00 32.19 3.66
2255 2331 6.993175 GATCAAATGATCTTGTGATGCATG 57.007 37.500 16.85 0.00 45.60 4.06
2268 2344 3.770933 CACCCAACCCAAGATCAAATGAT 59.229 43.478 0.00 0.00 37.51 2.45
2269 2345 3.164268 CACCCAACCCAAGATCAAATGA 58.836 45.455 0.00 0.00 0.00 2.57
2270 2346 2.234414 CCACCCAACCCAAGATCAAATG 59.766 50.000 0.00 0.00 0.00 2.32
2271 2347 2.539302 CCACCCAACCCAAGATCAAAT 58.461 47.619 0.00 0.00 0.00 2.32
2272 2348 2.008242 CCACCCAACCCAAGATCAAA 57.992 50.000 0.00 0.00 0.00 2.69
2273 2349 0.541764 GCCACCCAACCCAAGATCAA 60.542 55.000 0.00 0.00 0.00 2.57
2274 2350 1.076549 GCCACCCAACCCAAGATCA 59.923 57.895 0.00 0.00 0.00 2.92
2275 2351 2.046285 CGCCACCCAACCCAAGATC 61.046 63.158 0.00 0.00 0.00 2.75
2276 2352 2.035626 CGCCACCCAACCCAAGAT 59.964 61.111 0.00 0.00 0.00 2.40
2277 2353 4.966787 GCGCCACCCAACCCAAGA 62.967 66.667 0.00 0.00 0.00 3.02
2278 2354 2.837031 ATAGCGCCACCCAACCCAAG 62.837 60.000 2.29 0.00 0.00 3.61
2279 2355 2.830186 GATAGCGCCACCCAACCCAA 62.830 60.000 2.29 0.00 0.00 4.12
2280 2356 3.334891 ATAGCGCCACCCAACCCA 61.335 61.111 2.29 0.00 0.00 4.51
2281 2357 2.516225 GATAGCGCCACCCAACCC 60.516 66.667 2.29 0.00 0.00 4.11
2282 2358 2.895372 CGATAGCGCCACCCAACC 60.895 66.667 2.29 0.00 0.00 3.77
2283 2359 1.743995 AACGATAGCGCCACCCAAC 60.744 57.895 2.29 0.00 42.48 3.77
2284 2360 1.743623 CAACGATAGCGCCACCCAA 60.744 57.895 2.29 0.00 42.48 4.12
2285 2361 2.125310 CAACGATAGCGCCACCCA 60.125 61.111 2.29 0.00 42.48 4.51
2286 2362 2.125269 ACAACGATAGCGCCACCC 60.125 61.111 2.29 0.00 42.48 4.61
2287 2363 1.693083 GACACAACGATAGCGCCACC 61.693 60.000 2.29 0.00 42.48 4.61
2288 2364 1.011968 TGACACAACGATAGCGCCAC 61.012 55.000 2.29 0.00 42.48 5.01
2289 2365 0.108377 ATGACACAACGATAGCGCCA 60.108 50.000 2.29 0.00 42.48 5.69
2290 2366 1.006832 AATGACACAACGATAGCGCC 58.993 50.000 2.29 0.00 42.48 6.53
2291 2367 1.852077 GCAATGACACAACGATAGCGC 60.852 52.381 0.00 0.00 42.48 5.92
2292 2368 1.589731 CGCAATGACACAACGATAGCG 60.590 52.381 0.00 0.00 44.79 4.26
2293 2369 1.852077 GCGCAATGACACAACGATAGC 60.852 52.381 0.30 0.00 42.67 2.97
2294 2370 1.393196 TGCGCAATGACACAACGATAG 59.607 47.619 8.16 0.00 46.19 2.08
2295 2371 1.433534 TGCGCAATGACACAACGATA 58.566 45.000 8.16 0.00 0.00 2.92
2296 2372 0.804364 ATGCGCAATGACACAACGAT 59.196 45.000 17.11 0.00 0.00 3.73
2297 2373 0.165727 GATGCGCAATGACACAACGA 59.834 50.000 17.11 0.00 0.00 3.85
2298 2374 0.110283 TGATGCGCAATGACACAACG 60.110 50.000 17.11 0.00 0.00 4.10
2299 2375 1.715519 GTTGATGCGCAATGACACAAC 59.284 47.619 17.11 18.54 39.03 3.32
2300 2376 1.335780 GGTTGATGCGCAATGACACAA 60.336 47.619 17.11 11.34 39.03 3.33
2301 2377 0.240678 GGTTGATGCGCAATGACACA 59.759 50.000 17.11 5.42 39.03 3.72
2302 2378 0.523072 AGGTTGATGCGCAATGACAC 59.477 50.000 17.11 7.11 39.03 3.67
2303 2379 2.009051 CTAGGTTGATGCGCAATGACA 58.991 47.619 17.11 10.08 39.03 3.58
2304 2380 1.331756 CCTAGGTTGATGCGCAATGAC 59.668 52.381 17.11 13.05 39.03 3.06
2305 2381 1.667236 CCTAGGTTGATGCGCAATGA 58.333 50.000 17.11 0.00 39.03 2.57
2306 2382 0.029834 GCCTAGGTTGATGCGCAATG 59.970 55.000 17.11 0.00 39.03 2.82
2307 2383 1.103398 GGCCTAGGTTGATGCGCAAT 61.103 55.000 17.11 2.42 39.03 3.56
2308 2384 1.748879 GGCCTAGGTTGATGCGCAA 60.749 57.895 17.11 0.00 0.00 4.85
2309 2385 2.124736 GGCCTAGGTTGATGCGCA 60.125 61.111 14.96 14.96 0.00 6.09
2310 2386 1.103398 ATTGGCCTAGGTTGATGCGC 61.103 55.000 11.31 0.00 0.00 6.09
2311 2387 2.254546 TATTGGCCTAGGTTGATGCG 57.745 50.000 11.31 0.00 0.00 4.73
2312 2388 3.507622 GGAATATTGGCCTAGGTTGATGC 59.492 47.826 11.31 0.00 0.00 3.91
2313 2389 4.520492 GTGGAATATTGGCCTAGGTTGATG 59.480 45.833 11.31 0.00 0.00 3.07
2314 2390 4.447762 GGTGGAATATTGGCCTAGGTTGAT 60.448 45.833 11.31 4.51 0.00 2.57
2315 2391 3.117663 GGTGGAATATTGGCCTAGGTTGA 60.118 47.826 11.31 0.00 0.00 3.18
2316 2392 3.117512 AGGTGGAATATTGGCCTAGGTTG 60.118 47.826 11.31 0.00 0.00 3.77
2317 2393 3.131252 AGGTGGAATATTGGCCTAGGTT 58.869 45.455 11.31 0.00 0.00 3.50
2318 2394 2.789219 AGGTGGAATATTGGCCTAGGT 58.211 47.619 11.31 0.00 0.00 3.08
2319 2395 3.884037 AAGGTGGAATATTGGCCTAGG 57.116 47.619 3.67 3.67 0.00 3.02
2320 2396 4.141158 AGGAAAGGTGGAATATTGGCCTAG 60.141 45.833 3.32 0.00 0.00 3.02
2321 2397 3.791545 AGGAAAGGTGGAATATTGGCCTA 59.208 43.478 3.32 0.00 0.00 3.93
2322 2398 2.587307 AGGAAAGGTGGAATATTGGCCT 59.413 45.455 3.32 0.00 0.00 5.19
2323 2399 2.695147 CAGGAAAGGTGGAATATTGGCC 59.305 50.000 0.00 0.00 0.00 5.36
2324 2400 2.695147 CCAGGAAAGGTGGAATATTGGC 59.305 50.000 0.00 0.00 37.23 4.52
2325 2401 3.981212 ACCAGGAAAGGTGGAATATTGG 58.019 45.455 0.00 0.00 41.30 3.16
2326 2402 6.265422 GGAATACCAGGAAAGGTGGAATATTG 59.735 42.308 0.00 0.00 43.14 1.90
2327 2403 6.068498 TGGAATACCAGGAAAGGTGGAATATT 60.068 38.462 0.00 0.00 43.14 1.28
2328 2404 5.435041 TGGAATACCAGGAAAGGTGGAATAT 59.565 40.000 0.00 0.00 43.14 1.28
2329 2405 4.791334 TGGAATACCAGGAAAGGTGGAATA 59.209 41.667 0.00 0.00 43.14 1.75
2330 2406 3.596046 TGGAATACCAGGAAAGGTGGAAT 59.404 43.478 0.00 0.00 43.14 3.01
2331 2407 2.990284 TGGAATACCAGGAAAGGTGGAA 59.010 45.455 0.00 0.00 43.14 3.53
2332 2408 2.638325 TGGAATACCAGGAAAGGTGGA 58.362 47.619 0.00 0.00 43.14 4.02
2344 2420 8.897872 TCTTATTTCTTTACGGATGGAATACC 57.102 34.615 0.00 0.00 0.00 2.73
2345 2421 9.760077 TCTCTTATTTCTTTACGGATGGAATAC 57.240 33.333 0.00 0.00 0.00 1.89
2347 2423 9.495572 GATCTCTTATTTCTTTACGGATGGAAT 57.504 33.333 0.00 0.00 0.00 3.01
2348 2424 8.482943 TGATCTCTTATTTCTTTACGGATGGAA 58.517 33.333 0.00 0.00 0.00 3.53
2349 2425 8.018537 TGATCTCTTATTTCTTTACGGATGGA 57.981 34.615 0.00 0.00 0.00 3.41
2350 2426 8.839310 ATGATCTCTTATTTCTTTACGGATGG 57.161 34.615 0.00 0.00 0.00 3.51
2394 2470 5.302313 AGGTACTCCCTTGATCGTTTAGATC 59.698 44.000 1.49 1.49 42.73 2.75
2395 2471 5.209659 AGGTACTCCCTTGATCGTTTAGAT 58.790 41.667 0.00 0.00 42.73 1.98
2396 2472 4.607239 AGGTACTCCCTTGATCGTTTAGA 58.393 43.478 0.00 0.00 42.73 2.10
2409 2485 8.859236 AGATGTTTTAACTAAAAGGTACTCCC 57.141 34.615 0.00 0.00 38.49 4.30
2454 2530 9.073475 AGCGATCTAGTCTAGTAGAATGAAAAT 57.927 33.333 10.34 0.00 32.72 1.82
2455 2531 8.453238 AGCGATCTAGTCTAGTAGAATGAAAA 57.547 34.615 10.34 0.00 32.72 2.29
2456 2532 8.346300 CAAGCGATCTAGTCTAGTAGAATGAAA 58.654 37.037 10.34 0.00 32.72 2.69
2457 2533 7.041030 CCAAGCGATCTAGTCTAGTAGAATGAA 60.041 40.741 10.34 0.00 32.72 2.57
2458 2534 6.428465 CCAAGCGATCTAGTCTAGTAGAATGA 59.572 42.308 10.34 6.35 32.72 2.57
2459 2535 6.348950 CCCAAGCGATCTAGTCTAGTAGAATG 60.349 46.154 10.34 1.29 32.72 2.67
2460 2536 5.708230 CCCAAGCGATCTAGTCTAGTAGAAT 59.292 44.000 5.33 5.33 32.72 2.40
2461 2537 5.064558 CCCAAGCGATCTAGTCTAGTAGAA 58.935 45.833 0.17 0.00 32.72 2.10
2462 2538 4.505215 CCCCAAGCGATCTAGTCTAGTAGA 60.505 50.000 6.77 0.00 33.52 2.59
2463 2539 3.754323 CCCCAAGCGATCTAGTCTAGTAG 59.246 52.174 6.77 0.00 0.00 2.57
2464 2540 3.393609 TCCCCAAGCGATCTAGTCTAGTA 59.606 47.826 6.77 0.00 0.00 1.82
2465 2541 2.175069 TCCCCAAGCGATCTAGTCTAGT 59.825 50.000 6.77 0.00 0.00 2.57
2466 2542 2.865079 TCCCCAAGCGATCTAGTCTAG 58.135 52.381 0.00 0.00 0.00 2.43
2467 2543 3.157881 CATCCCCAAGCGATCTAGTCTA 58.842 50.000 0.00 0.00 0.00 2.59
2468 2544 1.967066 CATCCCCAAGCGATCTAGTCT 59.033 52.381 0.00 0.00 0.00 3.24
2469 2545 1.001406 CCATCCCCAAGCGATCTAGTC 59.999 57.143 0.00 0.00 0.00 2.59
2470 2546 1.051812 CCATCCCCAAGCGATCTAGT 58.948 55.000 0.00 0.00 0.00 2.57
2471 2547 0.322975 CCCATCCCCAAGCGATCTAG 59.677 60.000 0.00 0.00 0.00 2.43
2472 2548 0.105194 TCCCATCCCCAAGCGATCTA 60.105 55.000 0.00 0.00 0.00 1.98
2473 2549 0.988145 TTCCCATCCCCAAGCGATCT 60.988 55.000 0.00 0.00 0.00 2.75
2474 2550 0.819666 GTTCCCATCCCCAAGCGATC 60.820 60.000 0.00 0.00 0.00 3.69
2475 2551 1.227383 GTTCCCATCCCCAAGCGAT 59.773 57.895 0.00 0.00 0.00 4.58
2476 2552 1.497309 AAGTTCCCATCCCCAAGCGA 61.497 55.000 0.00 0.00 0.00 4.93
2477 2553 1.000896 AAGTTCCCATCCCCAAGCG 60.001 57.895 0.00 0.00 0.00 4.68
2478 2554 0.972471 CCAAGTTCCCATCCCCAAGC 60.972 60.000 0.00 0.00 0.00 4.01
2479 2555 0.409484 ACCAAGTTCCCATCCCCAAG 59.591 55.000 0.00 0.00 0.00 3.61
2480 2556 0.114168 CACCAAGTTCCCATCCCCAA 59.886 55.000 0.00 0.00 0.00 4.12
2481 2557 1.773635 CACCAAGTTCCCATCCCCA 59.226 57.895 0.00 0.00 0.00 4.96
2482 2558 1.682344 GCACCAAGTTCCCATCCCC 60.682 63.158 0.00 0.00 0.00 4.81
2483 2559 0.681243 GAGCACCAAGTTCCCATCCC 60.681 60.000 0.00 0.00 0.00 3.85
2484 2560 0.329596 AGAGCACCAAGTTCCCATCC 59.670 55.000 0.00 0.00 0.00 3.51
2485 2561 1.743996 GAGAGCACCAAGTTCCCATC 58.256 55.000 0.00 0.00 0.00 3.51
2486 2562 0.036010 CGAGAGCACCAAGTTCCCAT 60.036 55.000 0.00 0.00 0.00 4.00
2487 2563 1.371183 CGAGAGCACCAAGTTCCCA 59.629 57.895 0.00 0.00 0.00 4.37
2488 2564 1.376037 CCGAGAGCACCAAGTTCCC 60.376 63.158 0.00 0.00 0.00 3.97
2489 2565 1.376037 CCCGAGAGCACCAAGTTCC 60.376 63.158 0.00 0.00 0.00 3.62
2490 2566 0.606604 TACCCGAGAGCACCAAGTTC 59.393 55.000 0.00 0.00 0.00 3.01
2491 2567 0.320697 GTACCCGAGAGCACCAAGTT 59.679 55.000 0.00 0.00 0.00 2.66
2492 2568 1.542187 GGTACCCGAGAGCACCAAGT 61.542 60.000 0.00 0.00 0.00 3.16
2493 2569 1.218316 GGTACCCGAGAGCACCAAG 59.782 63.158 0.00 0.00 0.00 3.61
2494 2570 3.384348 GGTACCCGAGAGCACCAA 58.616 61.111 0.00 0.00 0.00 3.67
2506 2582 3.238931 CACATAGGGTGCGAGGGTACC 62.239 61.905 2.17 2.17 46.32 3.34
2507 2583 0.104304 CACATAGGGTGCGAGGGTAC 59.896 60.000 0.00 0.00 41.36 3.34
2508 2584 2.511818 CACATAGGGTGCGAGGGTA 58.488 57.895 0.00 0.00 41.36 3.69
2509 2585 3.309582 CACATAGGGTGCGAGGGT 58.690 61.111 0.00 0.00 41.36 4.34
2517 2593 3.043998 TTTTTGGCGCACATAGGGT 57.956 47.368 10.83 0.00 0.00 4.34
2563 2639 9.995003 AATACCTGATCATGTTTGCTTTAAAAA 57.005 25.926 9.01 0.00 0.00 1.94
2564 2640 9.421806 CAATACCTGATCATGTTTGCTTTAAAA 57.578 29.630 9.01 0.00 0.00 1.52
2565 2641 8.584157 ACAATACCTGATCATGTTTGCTTTAAA 58.416 29.630 9.01 0.00 0.00 1.52
2566 2642 8.028354 CACAATACCTGATCATGTTTGCTTTAA 58.972 33.333 9.01 0.00 0.00 1.52
2567 2643 7.537715 CACAATACCTGATCATGTTTGCTTTA 58.462 34.615 9.01 0.00 0.00 1.85
2568 2644 6.392354 CACAATACCTGATCATGTTTGCTTT 58.608 36.000 9.01 0.00 0.00 3.51
2569 2645 5.622914 GCACAATACCTGATCATGTTTGCTT 60.623 40.000 9.01 0.00 0.00 3.91
2570 2646 4.142315 GCACAATACCTGATCATGTTTGCT 60.142 41.667 9.01 3.48 0.00 3.91
2571 2647 4.107622 GCACAATACCTGATCATGTTTGC 58.892 43.478 9.01 9.22 0.00 3.68
2572 2648 5.449588 GGAGCACAATACCTGATCATGTTTG 60.450 44.000 9.01 13.93 0.00 2.93
2573 2649 4.641989 GGAGCACAATACCTGATCATGTTT 59.358 41.667 9.01 0.00 0.00 2.83
2574 2650 4.080129 AGGAGCACAATACCTGATCATGTT 60.080 41.667 9.01 0.00 32.39 2.71
2575 2651 3.457380 AGGAGCACAATACCTGATCATGT 59.543 43.478 8.74 8.74 32.39 3.21
2576 2652 4.082665 AGGAGCACAATACCTGATCATG 57.917 45.455 0.00 0.00 32.39 3.07
2577 2653 6.445451 AATAGGAGCACAATACCTGATCAT 57.555 37.500 0.00 0.00 35.52 2.45
2578 2654 5.894298 AATAGGAGCACAATACCTGATCA 57.106 39.130 0.00 0.00 35.52 2.92
2579 2655 8.725148 CATTTAATAGGAGCACAATACCTGATC 58.275 37.037 0.00 0.00 35.52 2.92
2580 2656 8.220559 ACATTTAATAGGAGCACAATACCTGAT 58.779 33.333 0.00 0.00 35.52 2.90
2581 2657 7.573710 ACATTTAATAGGAGCACAATACCTGA 58.426 34.615 0.00 0.00 35.52 3.86
2582 2658 7.807977 ACATTTAATAGGAGCACAATACCTG 57.192 36.000 0.00 0.00 35.52 4.00
2583 2659 8.686334 CAAACATTTAATAGGAGCACAATACCT 58.314 33.333 0.00 0.00 37.76 3.08
2584 2660 7.920682 CCAAACATTTAATAGGAGCACAATACC 59.079 37.037 0.00 0.00 0.00 2.73
2585 2661 8.682710 TCCAAACATTTAATAGGAGCACAATAC 58.317 33.333 0.00 0.00 0.00 1.89
2586 2662 8.682710 GTCCAAACATTTAATAGGAGCACAATA 58.317 33.333 0.00 0.00 0.00 1.90
2587 2663 7.178274 TGTCCAAACATTTAATAGGAGCACAAT 59.822 33.333 0.00 0.00 0.00 2.71
2588 2664 6.491745 TGTCCAAACATTTAATAGGAGCACAA 59.508 34.615 0.00 0.00 0.00 3.33
2589 2665 6.007076 TGTCCAAACATTTAATAGGAGCACA 58.993 36.000 0.00 0.00 0.00 4.57
2590 2666 6.509418 TGTCCAAACATTTAATAGGAGCAC 57.491 37.500 0.00 0.00 0.00 4.40
2591 2667 6.945435 TCTTGTCCAAACATTTAATAGGAGCA 59.055 34.615 0.00 0.00 34.73 4.26
2592 2668 7.391148 TCTTGTCCAAACATTTAATAGGAGC 57.609 36.000 0.00 0.00 34.73 4.70
2608 2684 9.753674 AGTCAATAAGGAATAATTTCTTGTCCA 57.246 29.630 0.00 0.00 32.16 4.02
2612 2688 9.722056 CCGAAGTCAATAAGGAATAATTTCTTG 57.278 33.333 0.00 0.00 32.16 3.02
2613 2689 8.903820 CCCGAAGTCAATAAGGAATAATTTCTT 58.096 33.333 0.00 0.00 32.16 2.52
2614 2690 7.502561 CCCCGAAGTCAATAAGGAATAATTTCT 59.497 37.037 0.00 0.00 32.16 2.52
2615 2691 7.284716 ACCCCGAAGTCAATAAGGAATAATTTC 59.715 37.037 0.00 0.00 0.00 2.17
2616 2692 7.123383 ACCCCGAAGTCAATAAGGAATAATTT 58.877 34.615 0.00 0.00 0.00 1.82
2617 2693 6.669631 ACCCCGAAGTCAATAAGGAATAATT 58.330 36.000 0.00 0.00 0.00 1.40
2618 2694 6.262056 ACCCCGAAGTCAATAAGGAATAAT 57.738 37.500 0.00 0.00 0.00 1.28
2619 2695 5.703730 ACCCCGAAGTCAATAAGGAATAA 57.296 39.130 0.00 0.00 0.00 1.40
2620 2696 6.811634 TTACCCCGAAGTCAATAAGGAATA 57.188 37.500 0.00 0.00 0.00 1.75
2621 2697 5.703730 TTACCCCGAAGTCAATAAGGAAT 57.296 39.130 0.00 0.00 0.00 3.01
2622 2698 5.502089 TTTACCCCGAAGTCAATAAGGAA 57.498 39.130 0.00 0.00 0.00 3.36
2623 2699 5.502089 TTTTACCCCGAAGTCAATAAGGA 57.498 39.130 0.00 0.00 0.00 3.36
2624 2700 6.376018 TCATTTTTACCCCGAAGTCAATAAGG 59.624 38.462 0.00 0.00 0.00 2.69
2625 2701 7.094549 TGTCATTTTTACCCCGAAGTCAATAAG 60.095 37.037 0.00 0.00 0.00 1.73
2626 2702 6.715718 TGTCATTTTTACCCCGAAGTCAATAA 59.284 34.615 0.00 0.00 0.00 1.40
2627 2703 6.239396 TGTCATTTTTACCCCGAAGTCAATA 58.761 36.000 0.00 0.00 0.00 1.90
2628 2704 5.074115 TGTCATTTTTACCCCGAAGTCAAT 58.926 37.500 0.00 0.00 0.00 2.57
2629 2705 4.462133 TGTCATTTTTACCCCGAAGTCAA 58.538 39.130 0.00 0.00 0.00 3.18
2630 2706 4.088056 TGTCATTTTTACCCCGAAGTCA 57.912 40.909 0.00 0.00 0.00 3.41
2631 2707 5.441709 TTTGTCATTTTTACCCCGAAGTC 57.558 39.130 0.00 0.00 0.00 3.01
2632 2708 6.413783 AATTTGTCATTTTTACCCCGAAGT 57.586 33.333 0.00 0.00 0.00 3.01
2633 2709 8.868916 CATAAATTTGTCATTTTTACCCCGAAG 58.131 33.333 0.00 0.00 0.00 3.79
2634 2710 8.585881 TCATAAATTTGTCATTTTTACCCCGAA 58.414 29.630 0.00 0.00 0.00 4.30
2635 2711 8.030106 GTCATAAATTTGTCATTTTTACCCCGA 58.970 33.333 0.00 0.00 0.00 5.14
2636 2712 7.815068 TGTCATAAATTTGTCATTTTTACCCCG 59.185 33.333 0.00 0.00 0.00 5.73
2637 2713 9.495572 TTGTCATAAATTTGTCATTTTTACCCC 57.504 29.630 0.00 0.00 0.00 4.95
2657 2733 9.582431 GTACTGTACACACTATATTGTTGTCAT 57.418 33.333 12.89 0.00 0.00 3.06
2658 2734 8.799367 AGTACTGTACACACTATATTGTTGTCA 58.201 33.333 19.27 0.00 0.00 3.58
2659 2735 9.635520 AAGTACTGTACACACTATATTGTTGTC 57.364 33.333 19.27 0.00 0.00 3.18
2660 2736 9.419297 CAAGTACTGTACACACTATATTGTTGT 57.581 33.333 19.27 8.95 0.00 3.32
2661 2737 9.419297 ACAAGTACTGTACACACTATATTGTTG 57.581 33.333 19.27 12.02 36.10 3.33
2669 2745 9.842775 AGCTATATACAAGTACTGTACACACTA 57.157 33.333 19.27 5.51 43.35 2.74
2670 2746 8.749026 AGCTATATACAAGTACTGTACACACT 57.251 34.615 19.27 0.00 43.35 3.55
2671 2747 9.798994 AAAGCTATATACAAGTACTGTACACAC 57.201 33.333 19.27 0.00 43.35 3.82
2699 2775 7.701539 TGCATCCTAGCTCAAAGATTAAAAA 57.298 32.000 0.00 0.00 34.99 1.94
2700 2776 7.701539 TTGCATCCTAGCTCAAAGATTAAAA 57.298 32.000 0.00 0.00 34.99 1.52
2701 2777 7.557358 TCATTGCATCCTAGCTCAAAGATTAAA 59.443 33.333 0.00 0.00 34.99 1.52
2702 2778 7.056006 TCATTGCATCCTAGCTCAAAGATTAA 58.944 34.615 0.00 0.00 34.99 1.40
2703 2779 6.594744 TCATTGCATCCTAGCTCAAAGATTA 58.405 36.000 0.00 0.00 34.99 1.75
2704 2780 5.443283 TCATTGCATCCTAGCTCAAAGATT 58.557 37.500 0.00 0.00 34.99 2.40
2705 2781 5.045012 TCATTGCATCCTAGCTCAAAGAT 57.955 39.130 0.00 0.00 34.99 2.40
2706 2782 4.492494 TCATTGCATCCTAGCTCAAAGA 57.508 40.909 0.00 0.00 34.99 2.52
2707 2783 5.125097 ACTTTCATTGCATCCTAGCTCAAAG 59.875 40.000 0.00 0.00 34.99 2.77
2708 2784 5.012239 ACTTTCATTGCATCCTAGCTCAAA 58.988 37.500 0.00 0.00 34.99 2.69
2709 2785 4.592942 ACTTTCATTGCATCCTAGCTCAA 58.407 39.130 0.00 0.00 34.99 3.02
2710 2786 4.194640 GACTTTCATTGCATCCTAGCTCA 58.805 43.478 0.00 0.00 34.99 4.26
2711 2787 4.194640 TGACTTTCATTGCATCCTAGCTC 58.805 43.478 0.00 0.00 34.99 4.09
2712 2788 4.226427 TGACTTTCATTGCATCCTAGCT 57.774 40.909 0.00 0.00 34.99 3.32
2713 2789 5.298777 AGAATGACTTTCATTGCATCCTAGC 59.701 40.000 6.14 0.00 46.20 3.42
2714 2790 6.766944 AGAGAATGACTTTCATTGCATCCTAG 59.233 38.462 6.14 0.00 46.20 3.02
2715 2791 6.541278 CAGAGAATGACTTTCATTGCATCCTA 59.459 38.462 6.14 0.00 46.20 2.94
2716 2792 5.357314 CAGAGAATGACTTTCATTGCATCCT 59.643 40.000 6.14 0.00 46.20 3.24
2717 2793 5.356190 TCAGAGAATGACTTTCATTGCATCC 59.644 40.000 6.14 0.00 46.20 3.51
2718 2794 6.432607 TCAGAGAATGACTTTCATTGCATC 57.567 37.500 6.14 2.67 46.20 3.91
2734 2810 9.321562 ACTCGTATAAAAACTTTTGTCAGAGAA 57.678 29.630 16.00 0.00 33.53 2.87
2735 2811 8.882415 ACTCGTATAAAAACTTTTGTCAGAGA 57.118 30.769 16.00 3.39 33.53 3.10
2737 2813 9.531942 TGTACTCGTATAAAAACTTTTGTCAGA 57.468 29.630 0.00 0.00 0.00 3.27
2826 2902 5.459768 CAGCGCACCATATATATGCAAAAA 58.540 37.500 16.08 0.00 39.39 1.94
2827 2903 4.082841 CCAGCGCACCATATATATGCAAAA 60.083 41.667 16.08 0.00 39.39 2.44
2828 2904 3.439825 CCAGCGCACCATATATATGCAAA 59.560 43.478 16.08 0.00 39.39 3.68
2829 2905 3.009026 CCAGCGCACCATATATATGCAA 58.991 45.455 16.08 0.00 39.39 4.08
2830 2906 2.631267 CCAGCGCACCATATATATGCA 58.369 47.619 16.08 0.00 39.39 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.