Multiple sequence alignment - TraesCS7D01G367400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G367400 chr7D 100.000 3121 0 0 1 3121 475185254 475188374 0.000000e+00 5764
1 TraesCS7D01G367400 chr7B 91.725 3154 180 35 1 3121 498969084 498972189 0.000000e+00 4303
2 TraesCS7D01G367400 chr7A 92.240 1134 60 10 1 1123 520833358 520832242 0.000000e+00 1581
3 TraesCS7D01G367400 chr7A 78.635 1231 193 38 1292 2486 520799507 520798311 0.000000e+00 752
4 TraesCS7D01G367400 chr3B 96.528 144 5 0 1782 1925 32496040 32495897 4.020000e-59 239
5 TraesCS7D01G367400 chr3B 96.528 144 5 0 1782 1925 32564914 32564771 4.020000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G367400 chr7D 475185254 475188374 3120 False 5764 5764 100.000 1 3121 1 chr7D.!!$F1 3120
1 TraesCS7D01G367400 chr7B 498969084 498972189 3105 False 4303 4303 91.725 1 3121 1 chr7B.!!$F1 3120
2 TraesCS7D01G367400 chr7A 520832242 520833358 1116 True 1581 1581 92.240 1 1123 1 chr7A.!!$R2 1122
3 TraesCS7D01G367400 chr7A 520798311 520799507 1196 True 752 752 78.635 1292 2486 1 chr7A.!!$R1 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 919 2.753966 CGCGTTTCTGGCATGGGAG 61.754 63.158 0.00 0.00 0.0 4.30 F
1418 1449 0.108472 TCGATGGCTCAGCTGTTCAG 60.108 55.000 14.67 4.97 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 1786 0.108019 ACTTGTTCACCTTCCCGACC 59.892 55.000 0.0 0.0 0.0 4.79 R
2500 2567 2.076803 GGAGGTAATCCCGCCCCTT 61.077 63.158 0.0 0.0 47.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 145 2.815211 CGACCTGCATGTCCACCG 60.815 66.667 15.40 1.96 31.35 4.94
156 161 2.870161 CGCGTCGTTCTCCTCGTG 60.870 66.667 0.00 0.00 0.00 4.35
911 919 2.753966 CGCGTTTCTGGCATGGGAG 61.754 63.158 0.00 0.00 0.00 4.30
912 920 3.056313 GCGTTTCTGGCATGGGAGC 62.056 63.158 0.00 0.00 0.00 4.70
1015 1023 1.746517 GCGATGAGGATTACGGGGT 59.253 57.895 0.00 0.00 0.00 4.95
1055 1066 0.546267 AGGAAAGAGGAGGCAGCTCA 60.546 55.000 0.00 0.00 0.00 4.26
1088 1099 0.400213 TCGGTTCAATCTTGGGTGCT 59.600 50.000 0.00 0.00 0.00 4.40
1090 1101 1.200020 CGGTTCAATCTTGGGTGCTTC 59.800 52.381 0.00 0.00 0.00 3.86
1091 1102 1.546029 GGTTCAATCTTGGGTGCTTCC 59.454 52.381 0.00 0.00 0.00 3.46
1123 1135 4.177026 CAGGAGTACAGACCAATTCTTCG 58.823 47.826 0.00 0.00 28.96 3.79
1124 1136 3.833070 AGGAGTACAGACCAATTCTTCGT 59.167 43.478 0.00 0.00 28.96 3.85
1125 1137 4.082136 AGGAGTACAGACCAATTCTTCGTC 60.082 45.833 0.00 0.00 28.96 4.20
1126 1138 4.082136 GGAGTACAGACCAATTCTTCGTCT 60.082 45.833 0.00 0.00 37.34 4.18
1127 1139 5.061920 AGTACAGACCAATTCTTCGTCTC 57.938 43.478 0.00 0.00 34.65 3.36
1129 1141 2.028020 ACAGACCAATTCTTCGTCTCCC 60.028 50.000 0.00 0.00 34.65 4.30
1131 1143 1.555533 GACCAATTCTTCGTCTCCCCT 59.444 52.381 0.00 0.00 0.00 4.79
1132 1144 1.555533 ACCAATTCTTCGTCTCCCCTC 59.444 52.381 0.00 0.00 0.00 4.30
1133 1145 1.555075 CCAATTCTTCGTCTCCCCTCA 59.445 52.381 0.00 0.00 0.00 3.86
1134 1146 2.027192 CCAATTCTTCGTCTCCCCTCAA 60.027 50.000 0.00 0.00 0.00 3.02
1184 1198 1.544246 GAAGCAACTAACCCGCCAAAT 59.456 47.619 0.00 0.00 0.00 2.32
1186 1200 2.797786 AGCAACTAACCCGCCAAATTA 58.202 42.857 0.00 0.00 0.00 1.40
1210 1224 1.227089 CGGATCGCTCTCCACTTGG 60.227 63.158 2.77 0.00 34.78 3.61
1214 1228 1.205893 GATCGCTCTCCACTTGGTCTT 59.794 52.381 0.00 0.00 36.34 3.01
1220 1234 1.340248 TCTCCACTTGGTCTTGACGTC 59.660 52.381 9.11 9.11 36.34 4.34
1221 1235 0.391597 TCCACTTGGTCTTGACGTCC 59.608 55.000 14.12 0.00 36.34 4.79
1252 1278 1.139058 TCCTGCCTATTCTTTCGCTCC 59.861 52.381 0.00 0.00 0.00 4.70
1256 1282 1.541452 GCCTATTCTTTCGCTCCTCCC 60.541 57.143 0.00 0.00 0.00 4.30
1262 1288 2.564553 CTTTCGCTCCTCCCCTCACG 62.565 65.000 0.00 0.00 0.00 4.35
1266 1292 2.765807 CTCCTCCCCTCACGCCAT 60.766 66.667 0.00 0.00 0.00 4.40
1267 1293 2.764128 TCCTCCCCTCACGCCATC 60.764 66.667 0.00 0.00 0.00 3.51
1268 1294 3.083349 CCTCCCCTCACGCCATCA 61.083 66.667 0.00 0.00 0.00 3.07
1269 1295 2.446848 CCTCCCCTCACGCCATCAT 61.447 63.158 0.00 0.00 0.00 2.45
1270 1296 1.227764 CTCCCCTCACGCCATCATG 60.228 63.158 0.00 0.00 0.00 3.07
1271 1297 2.903855 CCCCTCACGCCATCATGC 60.904 66.667 0.00 0.00 0.00 4.06
1272 1298 2.124612 CCCTCACGCCATCATGCA 60.125 61.111 0.00 0.00 0.00 3.96
1273 1299 2.475466 CCCTCACGCCATCATGCAC 61.475 63.158 0.00 0.00 0.00 4.57
1280 1306 0.816421 CGCCATCATGCACATCCTCA 60.816 55.000 0.00 0.00 0.00 3.86
1314 1341 2.065799 CTCCCCCTATAAACCATGGCT 58.934 52.381 13.04 0.00 0.00 4.75
1316 1343 1.780309 CCCCCTATAAACCATGGCTCA 59.220 52.381 13.04 0.00 0.00 4.26
1363 1393 3.121944 GCAAACAGTGTAGTGATCAGTCG 59.878 47.826 6.25 0.00 0.00 4.18
1373 1403 1.594862 GTGATCAGTCGCAAGCCATAC 59.405 52.381 0.00 0.00 34.96 2.39
1374 1404 1.221414 GATCAGTCGCAAGCCATACC 58.779 55.000 0.00 0.00 37.18 2.73
1384 1414 1.812571 CAAGCCATACCCAGTGTTCAC 59.187 52.381 0.00 0.00 0.00 3.18
1388 1419 3.329520 AGCCATACCCAGTGTTCACTAAA 59.670 43.478 5.11 0.00 0.00 1.85
1391 1422 5.185056 GCCATACCCAGTGTTCACTAAATTT 59.815 40.000 5.11 0.00 0.00 1.82
1397 1428 6.549364 ACCCAGTGTTCACTAAATTTTGATCA 59.451 34.615 6.63 3.55 0.00 2.92
1414 1445 0.538584 TCAATCGATGGCTCAGCTGT 59.461 50.000 14.67 0.00 0.00 4.40
1418 1449 0.108472 TCGATGGCTCAGCTGTTCAG 60.108 55.000 14.67 4.97 0.00 3.02
1429 1460 2.157279 CAGCTGTTCAGCTTCTTCTTCG 59.843 50.000 22.40 7.23 43.52 3.79
1431 1462 3.005897 AGCTGTTCAGCTTCTTCTTCGTA 59.994 43.478 19.80 0.00 43.52 3.43
1438 1469 5.001874 TCAGCTTCTTCTTCGTACTACTCA 58.998 41.667 0.00 0.00 0.00 3.41
1441 1472 4.965158 GCTTCTTCTTCGTACTACTCATCG 59.035 45.833 0.00 0.00 0.00 3.84
1500 1531 4.367023 CTCGTTCCGCCGGTTCCA 62.367 66.667 1.63 0.00 0.00 3.53
1503 1534 2.329614 CGTTCCGCCGGTTCCAATT 61.330 57.895 1.63 0.00 0.00 2.32
1524 1555 2.019984 GGTAAGAGGTACATCGTCGGT 58.980 52.381 0.00 0.00 36.24 4.69
1527 1566 1.226888 GAGGTACATCGTCGGTGGC 60.227 63.158 10.81 2.14 0.00 5.01
1589 1628 0.911769 TACATCAAGTGGGCCTCCAG 59.088 55.000 4.53 0.00 45.05 3.86
1602 1641 2.165998 GCCTCCAGCATTCAGTTCTTT 58.834 47.619 0.00 0.00 42.97 2.52
1614 1653 3.223435 TCAGTTCTTTGTCGAGGACTCT 58.777 45.455 0.00 0.00 33.08 3.24
1637 1676 5.873146 ATTGGTAAGGAGGACTAACTAGC 57.127 43.478 0.00 0.00 0.00 3.42
1690 1731 7.114953 TGCGTGCATTTTGTTTTTATTAATCGA 59.885 29.630 0.00 0.00 0.00 3.59
1745 1786 5.573282 AGAATTCATGTACAAGAACGACTCG 59.427 40.000 15.23 0.00 0.00 4.18
1925 1966 0.955428 TCATGCTCAACGTCAAGGCC 60.955 55.000 0.00 0.00 0.00 5.19
1927 1968 2.032681 GCTCAACGTCAAGGCCCT 59.967 61.111 0.00 0.00 0.00 5.19
1976 2018 3.649652 AAGCCCTCCTAGCCCTGCT 62.650 63.158 0.00 0.00 43.41 4.24
1977 2019 3.555324 GCCCTCCTAGCCCTGCTC 61.555 72.222 0.00 0.00 40.44 4.26
2082 2128 3.153919 GCCTTGATGTTGGTGGTTTCTA 58.846 45.455 0.00 0.00 0.00 2.10
2125 2171 2.885676 CGATTCGGGCCTGAATGCG 61.886 63.158 38.70 32.68 38.65 4.73
2179 2225 7.609146 TGTAGGTCGTCTAGTTCAGATTCTTTA 59.391 37.037 0.00 0.00 35.17 1.85
2222 2268 0.870393 GATCGAGCCGTACGGTATGA 59.130 55.000 33.34 26.41 37.65 2.15
2322 2370 7.882791 TGCTCCAGAGTAAAAGAAATTACATCA 59.117 33.333 0.00 0.00 38.07 3.07
2323 2371 8.394121 GCTCCAGAGTAAAAGAAATTACATCAG 58.606 37.037 0.00 0.00 38.07 2.90
2361 2422 9.742144 AATACGGTGTAGATAGTCTCTGATTAT 57.258 33.333 0.00 0.00 35.28 1.28
2411 2472 4.589908 AGAAGACGGCCAAACAAGATTAT 58.410 39.130 2.24 0.00 0.00 1.28
2420 2481 7.554835 ACGGCCAAACAAGATTATCAAAGTATA 59.445 33.333 2.24 0.00 0.00 1.47
2452 2519 2.097680 AAAAATCATTGCGCCAAGGG 57.902 45.000 4.18 0.00 0.00 3.95
2500 2567 4.640771 AACAATTGAGGAGGTCTTAGCA 57.359 40.909 13.59 0.00 0.00 3.49
2502 2569 4.583871 ACAATTGAGGAGGTCTTAGCAAG 58.416 43.478 13.59 0.00 0.00 4.01
2593 2660 6.927381 GCCGTTAGCATATAGGTCTTTTTCTA 59.073 38.462 0.00 0.00 42.97 2.10
2595 2662 8.926710 CCGTTAGCATATAGGTCTTTTTCTATG 58.073 37.037 0.00 0.00 0.00 2.23
2786 2853 5.607477 AGAACAATATCCCGCGAGATAAAA 58.393 37.500 14.55 0.00 32.61 1.52
2915 2983 7.442364 CGATTCCACATATCTCAAAATAGGTGT 59.558 37.037 7.61 0.00 40.53 4.16
2916 2984 9.125026 GATTCCACATATCTCAAAATAGGTGTT 57.875 33.333 7.61 0.00 40.53 3.32
3007 3075 9.567848 AAAAAGTTCATGTGTAACTGTACAAAG 57.432 29.630 0.00 0.00 41.89 2.77
3009 3077 8.677148 AAGTTCATGTGTAACTGTACAAAGAT 57.323 30.769 0.00 0.00 41.89 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.732366 CGATTCATTCGGTCTCGTGAT 58.268 47.619 0.00 0.00 44.28 3.06
35 36 0.179134 GCTGTACAGAGGGTGTAGCG 60.179 60.000 27.08 0.00 42.56 4.26
41 42 5.763876 ATTTAAGAAGCTGTACAGAGGGT 57.236 39.130 27.08 7.37 0.00 4.34
89 94 4.711178 CGTGTGGCGGATAGAGGAACTC 62.711 59.091 0.00 0.00 46.72 3.01
140 145 3.173240 GCACGAGGAGAACGACGC 61.173 66.667 0.00 0.00 34.70 5.19
156 161 1.693083 GAACCTGTCGGCGTACATGC 61.693 60.000 6.85 0.00 0.00 4.06
890 898 2.753966 CCATGCCAGAAACGCGGAG 61.754 63.158 12.47 0.00 0.00 4.63
1015 1023 3.726517 GCGAGCTTTGCTTCCGCA 61.727 61.111 16.76 0.00 46.25 5.69
1055 1066 3.547746 TGAACCGAAAGTTAACTTGCCT 58.452 40.909 21.22 6.18 39.40 4.75
1096 1107 6.198639 AGAATTGGTCTGTACTCCTGTAGAT 58.801 40.000 0.00 0.00 34.29 1.98
1097 1108 5.580998 AGAATTGGTCTGTACTCCTGTAGA 58.419 41.667 0.00 0.00 34.29 2.59
1098 1109 5.923733 AGAATTGGTCTGTACTCCTGTAG 57.076 43.478 0.00 0.00 34.29 2.74
1099 1110 5.105877 CGAAGAATTGGTCTGTACTCCTGTA 60.106 44.000 0.00 0.00 36.40 2.74
1100 1111 4.322049 CGAAGAATTGGTCTGTACTCCTGT 60.322 45.833 0.00 0.00 36.40 4.00
1101 1112 4.177026 CGAAGAATTGGTCTGTACTCCTG 58.823 47.826 0.00 0.00 36.40 3.86
1134 1146 6.771267 ACCGAGACTTGGAAGATTTAGTTTTT 59.229 34.615 16.24 0.00 0.00 1.94
1138 1150 6.396450 GTTACCGAGACTTGGAAGATTTAGT 58.604 40.000 16.24 0.00 0.00 2.24
1139 1151 5.811100 GGTTACCGAGACTTGGAAGATTTAG 59.189 44.000 16.24 0.00 0.00 1.85
1140 1152 5.727434 GGTTACCGAGACTTGGAAGATTTA 58.273 41.667 16.24 0.00 0.00 1.40
1143 1155 3.889520 GGTTACCGAGACTTGGAAGAT 57.110 47.619 16.24 0.00 0.00 2.40
1172 1186 1.451067 CGGTGTAATTTGGCGGGTTA 58.549 50.000 0.00 0.00 0.00 2.85
1175 1189 2.487892 GCGGTGTAATTTGGCGGG 59.512 61.111 0.00 0.00 0.00 6.13
1199 1213 1.341531 ACGTCAAGACCAAGTGGAGAG 59.658 52.381 3.83 0.00 38.94 3.20
1210 1224 2.126031 GCGAGGGGACGTCAAGAC 60.126 66.667 18.91 4.08 44.35 3.01
1252 1278 1.227764 CATGATGGCGTGAGGGGAG 60.228 63.158 0.00 0.00 32.63 4.30
1256 1282 1.099295 ATGTGCATGATGGCGTGAGG 61.099 55.000 0.00 0.00 36.28 3.86
1262 1288 1.540267 GATGAGGATGTGCATGATGGC 59.460 52.381 0.00 0.00 0.00 4.40
1263 1289 3.141767 AGATGAGGATGTGCATGATGG 57.858 47.619 0.00 0.00 0.00 3.51
1264 1290 4.319549 CGAAAGATGAGGATGTGCATGATG 60.320 45.833 0.00 0.00 0.00 3.07
1265 1291 3.813724 CGAAAGATGAGGATGTGCATGAT 59.186 43.478 0.00 0.00 0.00 2.45
1266 1292 3.200483 CGAAAGATGAGGATGTGCATGA 58.800 45.455 0.00 0.00 0.00 3.07
1267 1293 2.941064 ACGAAAGATGAGGATGTGCATG 59.059 45.455 0.00 0.00 0.00 4.06
1268 1294 3.272574 ACGAAAGATGAGGATGTGCAT 57.727 42.857 0.00 0.00 0.00 3.96
1269 1295 2.768253 ACGAAAGATGAGGATGTGCA 57.232 45.000 0.00 0.00 0.00 4.57
1270 1296 3.786635 AGTACGAAAGATGAGGATGTGC 58.213 45.455 0.00 0.00 0.00 4.57
1271 1297 4.363999 GGAGTACGAAAGATGAGGATGTG 58.636 47.826 0.00 0.00 0.00 3.21
1272 1298 3.385111 GGGAGTACGAAAGATGAGGATGT 59.615 47.826 0.00 0.00 0.00 3.06
1273 1299 3.639094 AGGGAGTACGAAAGATGAGGATG 59.361 47.826 0.00 0.00 0.00 3.51
1280 1306 1.691801 GGGGGAGGGAGTACGAAAGAT 60.692 57.143 0.00 0.00 0.00 2.40
1314 1341 1.079612 CGTGGATGTGCAGAGCTGA 60.080 57.895 0.00 0.00 0.00 4.26
1316 1343 1.079543 GACGTGGATGTGCAGAGCT 60.080 57.895 0.00 0.00 0.00 4.09
1363 1393 0.811281 GAACACTGGGTATGGCTTGC 59.189 55.000 0.00 0.00 0.00 4.01
1373 1403 6.980593 TGATCAAAATTTAGTGAACACTGGG 58.019 36.000 16.37 0.58 42.52 4.45
1374 1404 9.132521 GATTGATCAAAATTTAGTGAACACTGG 57.867 33.333 13.09 0.00 42.52 4.00
1384 1414 7.420002 TGAGCCATCGATTGATCAAAATTTAG 58.580 34.615 14.34 2.09 30.49 1.85
1388 1419 4.261489 GCTGAGCCATCGATTGATCAAAAT 60.261 41.667 16.92 3.99 30.49 1.82
1391 1422 2.158856 AGCTGAGCCATCGATTGATCAA 60.159 45.455 16.92 11.26 30.49 2.57
1397 1428 1.065926 TGAACAGCTGAGCCATCGATT 60.066 47.619 23.35 0.00 0.00 3.34
1414 1445 5.472478 TGAGTAGTACGAAGAAGAAGCTGAA 59.528 40.000 0.00 0.00 0.00 3.02
1418 1449 4.965158 CGATGAGTAGTACGAAGAAGAAGC 59.035 45.833 0.00 0.00 0.00 3.86
1429 1460 1.482278 GCAGCAGCGATGAGTAGTAC 58.518 55.000 4.02 0.00 0.00 2.73
1431 1462 1.142748 GGCAGCAGCGATGAGTAGT 59.857 57.895 4.02 0.00 43.41 2.73
1438 1469 4.521062 GGACTCGGCAGCAGCGAT 62.521 66.667 0.00 0.00 43.41 4.58
1473 1504 2.112297 GGAACGAGCCCAACACCA 59.888 61.111 0.00 0.00 0.00 4.17
1497 1528 4.468510 ACGATGTACCTCTTACCAATTGGA 59.531 41.667 31.22 11.78 38.94 3.53
1500 1531 4.441079 CCGACGATGTACCTCTTACCAATT 60.441 45.833 0.00 0.00 0.00 2.32
1503 1534 2.019249 CCGACGATGTACCTCTTACCA 58.981 52.381 0.00 0.00 0.00 3.25
1552 1591 7.437713 TGATGTACATGTCCTTATTCTCCTT 57.562 36.000 14.43 0.00 0.00 3.36
1560 1599 4.625324 GCCCACTTGATGTACATGTCCTTA 60.625 45.833 14.43 0.00 35.22 2.69
1589 1628 3.067106 TCCTCGACAAAGAACTGAATGC 58.933 45.455 0.00 0.00 0.00 3.56
1602 1641 3.952323 CCTTACCAATAGAGTCCTCGACA 59.048 47.826 0.00 0.00 34.60 4.35
1614 1653 6.437755 TGCTAGTTAGTCCTCCTTACCAATA 58.562 40.000 0.00 0.00 0.00 1.90
1648 1687 3.454375 CACGCAGGTAGATTAATCGGTT 58.546 45.455 9.78 0.00 0.00 4.44
1649 1688 2.802057 GCACGCAGGTAGATTAATCGGT 60.802 50.000 9.78 0.00 0.00 4.69
1650 1689 1.792949 GCACGCAGGTAGATTAATCGG 59.207 52.381 9.78 0.76 0.00 4.18
1651 1690 2.469826 TGCACGCAGGTAGATTAATCG 58.530 47.619 9.78 0.00 0.00 3.34
1710 1751 7.722795 TGTACATGAATTCTTCAGAAAACGA 57.277 32.000 7.05 0.00 43.98 3.85
1712 1753 9.950680 TTCTTGTACATGAATTCTTCAGAAAAC 57.049 29.630 17.62 0.00 43.98 2.43
1745 1786 0.108019 ACTTGTTCACCTTCCCGACC 59.892 55.000 0.00 0.00 0.00 4.79
2015 2060 2.461110 GGTGCCGCTGTCCATTACG 61.461 63.158 0.00 0.00 0.00 3.18
2038 2083 1.613317 CCCATGTGACGAGGCCACTA 61.613 60.000 5.01 0.00 35.66 2.74
2040 2085 2.436646 CCCATGTGACGAGGCCAC 60.437 66.667 5.01 0.00 35.23 5.01
2082 2128 2.288579 CCATCAATGCAAGTGTTGTGCT 60.289 45.455 0.00 0.00 42.69 4.40
2125 2171 1.154599 CGCATTGTGTCTCACGCAC 60.155 57.895 0.00 0.00 38.47 5.34
2179 2225 6.434028 TCTGCAACTAAGAAATTAACCATGCT 59.566 34.615 0.00 0.00 0.00 3.79
2199 2245 2.407616 CGTACGGCTCGATCTGCA 59.592 61.111 7.57 0.00 0.00 4.41
2222 2268 7.161404 TCAAACTGCACACATTCTCTAACTAT 58.839 34.615 0.00 0.00 0.00 2.12
2282 2328 4.592942 TCTGGAGCAAGCAATAATTGTCT 58.407 39.130 0.00 0.00 0.00 3.41
2361 2422 9.624697 GTGCATATAGAAACAAAATCAACTCAA 57.375 29.630 0.00 0.00 0.00 3.02
2482 2549 3.054065 CCCTTGCTAAGACCTCCTCAATT 60.054 47.826 0.00 0.00 0.00 2.32
2500 2567 2.076803 GGAGGTAATCCCGCCCCTT 61.077 63.158 0.00 0.00 47.00 3.95
2527 2594 6.037830 GCCAATTTTGCTTATGCTTCAATGAT 59.962 34.615 1.96 0.00 40.48 2.45
2528 2595 5.352016 GCCAATTTTGCTTATGCTTCAATGA 59.648 36.000 1.96 0.00 40.48 2.57
2529 2596 5.353123 AGCCAATTTTGCTTATGCTTCAATG 59.647 36.000 1.96 0.00 40.48 2.82
2530 2597 5.493809 AGCCAATTTTGCTTATGCTTCAAT 58.506 33.333 1.96 0.00 40.48 2.57
2570 2637 9.477484 ACATAGAAAAAGACCTATATGCTAACG 57.523 33.333 0.00 0.00 0.00 3.18
2889 2957 7.442364 ACACCTATTTTGAGATATGTGGAATCG 59.558 37.037 0.00 0.00 34.44 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.