AutoCloner

Multiple sequence alignment - TraesCS7D01G354500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G354500	chr7D	100.000	3034	0	0	1	3034	458519956	458522989	0.000000e+00	5603.0
1	TraesCS7D01G354500	chr7B	96.519	1810	53	4	534	2342	480275707	480277507	0.000000e+00	2985.0
2	TraesCS7D01G354500	chr7B	93.446	534	28	4	1	532	480274325	480274853	0.000000e+00	785.0
3	TraesCS7D01G354500	chr7A	97.124	1391	39	1	660	2050	541455383	541453994	0.000000e+00	2346.0
4	TraesCS7D01G354500	chr7A	91.519	283	22	2	246	527	541464397	541464116	3.670000e-104	388.0
5	TraesCS7D01G354500	chr7A	85.556	270	15	10	2075	2342	541453735	541453488	8.340000e-66	261.0
6	TraesCS7D01G354500	chr3D	88.184	694	73	4	2342	3034	178403964	178404649	0.000000e+00	819.0
7	TraesCS7D01G354500	chr3D	88.029	685	69	7	2346	3029	586569485	586568813	0.000000e+00	798.0
8	TraesCS7D01G354500	chr5D	87.500	696	73	7	2345	3034	518754413	518755100	0.000000e+00	791.0
9	TraesCS7D01G354500	chr5D	85.489	696	91	7	2345	3034	328727136	328726445	0.000000e+00	717.0
10	TraesCS7D01G354500	chr5D	75.161	310	51	22	256	549	124357356	124357057	4.110000e-24	122.0
11	TraesCS7D01G354500	chr3B	87.139	692	79	4	2345	3034	267223800	267223117	0.000000e+00	776.0
12	TraesCS7D01G354500	chr5B	87.743	669	66	5	2338	3004	67328658	67328004	0.000000e+00	767.0
13	TraesCS7D01G354500	chr4D	85.960	698	86	9	2345	3034	465442204	465441511	0.000000e+00	736.0
14	TraesCS7D01G354500	chr3A	85.591	694	92	3	2342	3034	240393763	240394449	0.000000e+00	721.0
15	TraesCS7D01G354500	chr3A	85.968	677	85	6	2340	3011	735609552	735610223	0.000000e+00	715.0
16	TraesCS7D01G354500	chr6B	84.000	500	72	6	1543	2036	279033070	279032573	9.840000e-130	473.0
17	TraesCS7D01G354500	chr6D	84.551	479	66	6	1563	2035	156437598	156437122	4.580000e-128	468.0
18	TraesCS7D01G354500	chr6A	83.567	499	74	6	1543	2035	209842090	209841594	7.660000e-126	460.0
19	TraesCS7D01G354500	chr1B	80.606	165	29	3	369	531	444308399	444308236	1.140000e-24	124.0
20	TraesCS7D01G354500	chr1B	92.683	41	3	0	571	611	678408507	678408547	3.270000e-05	60.2
21	TraesCS7D01G354500	chr1B	92.683	41	3	0	571	611	678443044	678443004	3.270000e-05	60.2
22	TraesCS7D01G354500	chr1B	92.683	41	3	0	571	611	678737282	678737242	3.270000e-05	60.2
23	TraesCS7D01G354500	chr1B	92.683	41	3	0	571	611	678788645	678788605	3.270000e-05	60.2
24	TraesCS7D01G354500	chr1B	92.308	39	3	0	571	609	678604050	678604012	4.230000e-04	56.5
25	TraesCS7D01G354500	chr4B	78.882	161	33	1	351	511	85634980	85635139	1.150000e-19	108.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G354500	chr7D	458519956	458522989	3033	False	5603.0	5603	100.0000	1	3034	1	chr7D.!!$F1	3033
1	TraesCS7D01G354500	chr7B	480274325	480277507	3182	False	1885.0	2985	94.9825	1	2342	2	chr7B.!!$F1	2341
2	TraesCS7D01G354500	chr7A	541453488	541455383	1895	True	1303.5	2346	91.3400	660	2342	2	chr7A.!!$R2	1682
3	TraesCS7D01G354500	chr3D	178403964	178404649	685	False	819.0	819	88.1840	2342	3034	1	chr3D.!!$F1	692
4	TraesCS7D01G354500	chr3D	586568813	586569485	672	True	798.0	798	88.0290	2346	3029	1	chr3D.!!$R1	683
5	TraesCS7D01G354500	chr5D	518754413	518755100	687	False	791.0	791	87.5000	2345	3034	1	chr5D.!!$F1	689
6	TraesCS7D01G354500	chr5D	328726445	328727136	691	True	717.0	717	85.4890	2345	3034	1	chr5D.!!$R2	689
7	TraesCS7D01G354500	chr3B	267223117	267223800	683	True	776.0	776	87.1390	2345	3034	1	chr3B.!!$R1	689
8	TraesCS7D01G354500	chr5B	67328004	67328658	654	True	767.0	767	87.7430	2338	3004	1	chr5B.!!$R1	666
9	TraesCS7D01G354500	chr4D	465441511	465442204	693	True	736.0	736	85.9600	2345	3034	1	chr4D.!!$R1	689
10	TraesCS7D01G354500	chr3A	240393763	240394449	686	False	721.0	721	85.5910	2342	3034	1	chr3A.!!$F1	692
11	TraesCS7D01G354500	chr3A	735609552	735610223	671	False	715.0	715	85.9680	2340	3011	1	chr3A.!!$F2	671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
125	126	0.233332	GCATCGCGAAAGTAGGCATC	59.767	55.0	15.24	0.00	0.00	3.91	F
1494	2350	0.580104	GGGCGTGAATATACGTGCAC	59.420	55.0	6.82	6.82	45.36	4.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1839	2695	0.817654	TGCCTCTCGATGTCGTTGAT	59.182	50.0	2.04	0.0	40.8	2.57	R
2524	3637	0.250597	AACTAGTTCCCCAACACGGC	60.251	55.0	1.12	0.0	34.6	5.68	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	0.320374	TGCTTGAGGGGAGTTGTACG	59.680	55.000	0.00	0.00	0.00	3.67
33	34	0.600057	GGGAGTTGTACGTCCGTCTT	59.400	55.000	0.00	0.00	33.13	3.01
35	36	1.058404	GAGTTGTACGTCCGTCTTGC	58.942	55.000	0.00	0.00	0.00	4.01
36	37	0.386476	AGTTGTACGTCCGTCTTGCA	59.614	50.000	0.00	0.00	0.00	4.08
39	40	2.126618	TACGTCCGTCTTGCAGCG	60.127	61.111	0.00	0.00	0.00	5.18
69	70	4.021368	ACACAAACGCTCATAGGAGTTAGT	60.021	41.667	6.23	1.71	43.37	2.24
76	77	3.816091	CTCATAGGAGTTAGTCGATGCG	58.184	50.000	0.00	0.00	36.36	4.73
91	92	1.128692	GATGCGTGTGTTTCCTGCTAC	59.871	52.381	0.00	0.00	0.00	3.58
123	124	3.794270	GCATCGCGAAAGTAGGCA	58.206	55.556	15.24	0.00	0.00	4.75
124	125	2.311294	GCATCGCGAAAGTAGGCAT	58.689	52.632	15.24	0.00	0.00	4.40
125	126	0.233332	GCATCGCGAAAGTAGGCATC	59.767	55.000	15.24	0.00	0.00	3.91
126	127	1.570813	CATCGCGAAAGTAGGCATCA	58.429	50.000	15.24	0.00	0.00	3.07
144	145	1.138266	TCACCTAATAGTCGCAAGCCC	59.862	52.381	0.00	0.00	37.18	5.19
149	150	0.748005	AATAGTCGCAAGCCCGCATT	60.748	50.000	0.00	0.00	37.18	3.56
196	197	1.206849	CCAATTAGGCCGCCATTGTTT	59.793	47.619	13.15	0.00	0.00	2.83
238	239	4.080975	TCCATAGTCTGCATTGACATGACA	60.081	41.667	0.00	0.00	39.27	3.58
245	246	2.885894	TGCATTGACATGACACACACAT	59.114	40.909	0.00	0.00	31.07	3.21
271	272	3.417601	CCATCTGGCATGACGCAG	58.582	61.111	0.00	0.00	45.17	5.18
366	369	6.975196	TTTTGTCAATCTTGATTTCTCCCA	57.025	33.333	0.00	0.00	39.73	4.37
501	504	4.219507	TGTGAAGAAGTGCAAGGAAAACAA	59.780	37.500	0.00	0.00	0.00	2.83
502	505	5.105392	TGTGAAGAAGTGCAAGGAAAACAAT	60.105	36.000	0.00	0.00	0.00	2.71
509	512	4.160252	AGTGCAAGGAAAACAATGTGACTT	59.840	37.500	0.00	0.00	0.00	3.01
514	517	6.346838	GCAAGGAAAACAATGTGACTTTATGC	60.347	38.462	0.00	0.00	0.00	3.14
528	531	8.043113	TGTGACTTTATGCATCTAGATTTCTGT	58.957	33.333	0.19	0.00	0.00	3.41
557	1412	5.067273	ACTAATGGAAATTTGACCGTGTGA	58.933	37.500	0.00	0.00	0.00	3.58
561	1416	4.141287	TGGAAATTTGACCGTGTGAGAAT	58.859	39.130	0.00	0.00	0.00	2.40
565	1420	3.961477	TTTGACCGTGTGAGAATTGTG	57.039	42.857	0.00	0.00	0.00	3.33
600	1455	3.748048	CAGCGACAAGTAATATGGATGGG	59.252	47.826	0.00	0.00	0.00	4.00
602	1457	4.287067	AGCGACAAGTAATATGGATGGGAT	59.713	41.667	0.00	0.00	0.00	3.85
613	1468	2.845659	TGGATGGGATGGAGTACTTGT	58.154	47.619	0.00	0.00	0.00	3.16
614	1469	2.771943	TGGATGGGATGGAGTACTTGTC	59.228	50.000	0.00	0.00	0.00	3.18
619	1474	5.319043	TGGGATGGAGTACTTGTCTTTTT	57.681	39.130	0.00	0.00	0.00	1.94
620	1475	6.442541	TGGGATGGAGTACTTGTCTTTTTA	57.557	37.500	0.00	0.00	0.00	1.52
622	1477	6.271391	TGGGATGGAGTACTTGTCTTTTTAGA	59.729	38.462	0.00	0.00	0.00	2.10
623	1478	7.166167	GGGATGGAGTACTTGTCTTTTTAGAA	58.834	38.462	0.00	0.00	0.00	2.10
624	1479	7.664318	GGGATGGAGTACTTGTCTTTTTAGAAA	59.336	37.037	0.00	0.00	0.00	2.52
625	1480	9.063615	GGATGGAGTACTTGTCTTTTTAGAAAA	57.936	33.333	0.00	0.00	0.00	2.29
626	1481	9.880064	GATGGAGTACTTGTCTTTTTAGAAAAC	57.120	33.333	0.00	0.00	0.00	2.43
673	1528	7.259482	TCAAAATAAAATAAAAGCGACGCTG	57.741	32.000	25.24	6.36	39.62	5.18
1144	2000	1.599576	GAGGCTGTGAAGGAGGACC	59.400	63.158	0.00	0.00	0.00	4.46
1304	2160	2.217038	TCAAGGCCAAGCTCGAGGT	61.217	57.895	12.24	12.24	0.00	3.85
1368	2224	2.442272	CCCGGGTCCTCTGTCGAT	60.442	66.667	14.18	0.00	0.00	3.59
1494	2350	0.580104	GGGCGTGAATATACGTGCAC	59.420	55.000	6.82	6.82	45.36	4.57
1513	2369	1.611977	ACGAATGACGAGAACCTGTGA	59.388	47.619	0.00	0.00	45.77	3.58
1802	2658	1.302832	CCTGCACCAGGTGTTCCTC	60.303	63.158	21.26	4.34	45.82	3.71
1856	2712	2.542618	CCAGATCAACGACATCGAGAGG	60.543	54.545	8.54	0.61	43.02	3.69
2091	3181	0.555769	TCCCCTGCTCCACACTTTTT	59.444	50.000	0.00	0.00	0.00	1.94
2128	3218	4.858692	CACACTGTCAAGGACTTTGTTTTG	59.141	41.667	0.00	0.00	38.01	2.44
2328	3419	2.810439	AATAGATCCAGACGAGCTGC	57.190	50.000	0.00	0.00	43.50	5.25
2334	3425	1.145598	CCAGACGAGCTGCCATGAT	59.854	57.895	0.00	0.00	43.50	2.45
2342	3433	4.925068	ACGAGCTGCCATGATTTAATTTC	58.075	39.130	0.00	0.00	0.00	2.17
2343	3434	4.641989	ACGAGCTGCCATGATTTAATTTCT	59.358	37.500	0.00	0.00	0.00	2.52
2396	3487	0.110056	CACATTGCTCACACGCCTTC	60.110	55.000	0.00	0.00	0.00	3.46
2412	3503	3.432186	CGCCTTCATCCACCTTGATTCTA	60.432	47.826	0.00	0.00	0.00	2.10
2417	3508	7.364144	GCCTTCATCCACCTTGATTCTATTTTT	60.364	37.037	0.00	0.00	0.00	1.94
2497	3603	1.468506	TTAGAGTGCTCGCCCACACA	61.469	55.000	7.79	0.00	39.30	3.72
2627	3741	1.529865	CGCTCGTACGGTGATAGATGA	59.470	52.381	16.52	0.00	0.00	2.92
2695	3809	6.488006	GGCAACTATGATTCATTGGTAGATGT	59.512	38.462	4.14	0.00	0.00	3.06
2704	3818	4.650734	TCATTGGTAGATGTCAACTGCAA	58.349	39.130	0.90	0.00	0.00	4.08
2734	3849	3.116079	AGTGGTAACCAGGTAAACACG	57.884	47.619	12.36	0.00	32.34	4.49
2747	3862	3.623960	GGTAAACACGCATGGCAACTATA	59.376	43.478	0.00	0.00	37.61	1.31
2817	3935	8.911918	AGGTAAACACACATGACAACTATTTA	57.088	30.769	0.00	0.00	0.00	1.40
2823	3941	9.897744	AACACACATGACAACTATTTATTTGAG	57.102	29.630	0.00	0.00	0.00	3.02
2850	3968	3.743911	TGTGGCAAGTAGTTAATCACACG	59.256	43.478	0.00	0.00	0.00	4.49
2976	4095	1.676006	CATCCCGGATGGCAACTAAAC	59.324	52.381	18.55	0.00	36.51	2.01
3012	4135	1.138883	CTAACGTAGCTGCGCCAGA	59.861	57.895	24.60	5.97	32.44	3.86
3014	4137	0.174845	TAACGTAGCTGCGCCAGAAT	59.825	50.000	24.60	0.00	32.44	2.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	1.008538	GTTTGTGTCTTGCCCGCTG	60.009	57.895	0.00	0.00	0.00	5.18
36	37	2.542907	CGTTTGTGTCTTGCCCGCT	61.543	57.895	0.00	0.00	0.00	5.52
39	40	1.282875	GAGCGTTTGTGTCTTGCCC	59.717	57.895	0.00	0.00	0.00	5.36
69	70	1.565156	GCAGGAAACACACGCATCGA	61.565	55.000	0.00	0.00	0.00	3.59
76	77	3.437049	GGAATCAGTAGCAGGAAACACAC	59.563	47.826	0.00	0.00	0.00	3.82
91	92	1.325640	CGATGCGACAGTTGGAATCAG	59.674	52.381	0.00	0.00	0.00	2.90
120	121	2.526304	TGCGACTATTAGGTGATGCC	57.474	50.000	0.00	0.00	37.58	4.40
122	123	2.802816	GGCTTGCGACTATTAGGTGATG	59.197	50.000	0.00	0.00	0.00	3.07
123	124	2.224305	GGGCTTGCGACTATTAGGTGAT	60.224	50.000	0.00	0.00	0.00	3.06
124	125	1.138266	GGGCTTGCGACTATTAGGTGA	59.862	52.381	0.00	0.00	0.00	4.02
125	126	1.583054	GGGCTTGCGACTATTAGGTG	58.417	55.000	0.00	0.00	0.00	4.00
126	127	0.104304	CGGGCTTGCGACTATTAGGT	59.896	55.000	0.00	0.00	0.00	3.08
144	145	2.736721	CGAATGATGGTACCCTAATGCG	59.263	50.000	10.07	4.86	0.00	4.73
149	150	1.338973	GCGACGAATGATGGTACCCTA	59.661	52.381	10.07	0.00	0.00	3.53
162	163	4.893601	TTGGTGGCACGCGACGAA	62.894	61.111	15.93	0.04	41.51	3.85
163	164	2.766875	TAATTGGTGGCACGCGACGA	62.767	55.000	15.93	0.00	41.51	4.20
196	197	0.988832	AGGGCGTGGAAAGGTAATCA	59.011	50.000	0.00	0.00	0.00	2.57
238	239	0.035152	ATGGCGGATGTGATGTGTGT	60.035	50.000	0.00	0.00	0.00	3.72
271	272	2.127758	CGTCGTTGAACGCTTGCC	60.128	61.111	13.62	0.00	42.21	4.52
290	291	1.164411	GATGGACGGAATTGCACACA	58.836	50.000	0.00	0.00	0.00	3.72
347	348	5.474876	ACAACTGGGAGAAATCAAGATTGAC	59.525	40.000	0.00	0.00	40.49	3.18
396	399	8.757164	ATCAATCGAAACAAAATTAAGGAACC	57.243	30.769	0.00	0.00	0.00	3.62
501	504	9.053840	CAGAAATCTAGATGCATAAAGTCACAT	57.946	33.333	5.86	0.00	0.00	3.21
502	505	8.043113	ACAGAAATCTAGATGCATAAAGTCACA	58.957	33.333	5.86	0.00	0.00	3.58
532	535	6.039941	TCACACGGTCAAATTTCCATTAGTTT	59.960	34.615	0.00	0.00	0.00	2.66
547	1402	2.900716	TCACAATTCTCACACGGTCA	57.099	45.000	0.00	0.00	0.00	4.02
551	1406	4.908736	AGTTGTTTCACAATTCTCACACG	58.091	39.130	0.00	0.00	40.59	4.49
553	1408	6.972328	GCTTTAGTTGTTTCACAATTCTCACA	59.028	34.615	0.00	0.00	40.59	3.58
557	1412	5.979517	GCTGCTTTAGTTGTTTCACAATTCT	59.020	36.000	0.00	0.00	40.59	2.40
561	1416	3.375610	TCGCTGCTTTAGTTGTTTCACAA	59.624	39.130	0.00	0.00	35.42	3.33
565	1420	3.602390	TGTCGCTGCTTTAGTTGTTTC	57.398	42.857	0.00	0.00	0.00	2.78
600	1455	9.880064	GTTTTCTAAAAAGACAAGTACTCCATC	57.120	33.333	0.00	0.00	0.00	3.51
602	1457	8.795842	TGTTTTCTAAAAAGACAAGTACTCCA	57.204	30.769	0.00	0.00	0.00	3.86
654	1509	5.539582	TGTCAGCGTCGCTTTTATTTTAT	57.460	34.783	19.06	0.00	36.40	1.40
666	1521	1.593006	ACTTCTTTGTTGTCAGCGTCG	59.407	47.619	0.00	0.00	0.00	5.12
673	1528	2.031683	CACCGGTGACTTCTTTGTTGTC	59.968	50.000	31.31	0.00	0.00	3.18
1144	2000	3.762674	GGGTCTCGAAGCCCTTTAG	57.237	57.895	14.76	0.00	41.63	1.85
1304	2160	3.701530	CGTTGTCGCGCTTGAGCA	61.702	61.111	5.56	0.00	42.21	4.26
1362	2218	2.126228	GTGCGGGTTCGATCGACA	60.126	61.111	19.26	9.41	39.00	4.35
1368	2224	2.915659	ACAGAGGTGCGGGTTCGA	60.916	61.111	0.00	0.00	39.00	3.71
1494	2350	1.986378	GTCACAGGTTCTCGTCATTCG	59.014	52.381	0.00	0.00	41.41	3.34
1839	2695	0.817654	TGCCTCTCGATGTCGTTGAT	59.182	50.000	2.04	0.00	40.80	2.57
2128	3218	0.317519	CACCGCTGGAAACGAAAACC	60.318	55.000	1.50	0.00	0.00	3.27
2334	3425	9.834628	GTGGACGTTATCATTTGAGAAATTAAA	57.165	29.630	0.00	0.00	0.00	1.52
2342	3433	4.245025	CGTGTGGACGTTATCATTTGAG	57.755	45.455	0.00	0.00	40.91	3.02
2382	3473	1.375908	GGATGAAGGCGTGTGAGCA	60.376	57.895	0.00	0.00	39.27	4.26
2396	3487	6.968904	CGTGAAAAATAGAATCAAGGTGGATG	59.031	38.462	0.00	0.00	0.00	3.51
2412	3503	7.119846	CAGACTCCTTTAGGATTCGTGAAAAAT	59.880	37.037	9.65	0.00	45.39	1.82
2417	3508	4.341487	TCAGACTCCTTTAGGATTCGTGA	58.659	43.478	9.65	10.42	45.39	4.35
2436	3542	3.448686	CCTACGTGGCACTTAGATTCAG	58.551	50.000	27.13	10.40	0.00	3.02
2437	3543	3.520290	CCTACGTGGCACTTAGATTCA	57.480	47.619	27.13	0.00	0.00	2.57
2472	3578	2.161486	GCGAGCACTCTAACGCCTG	61.161	63.158	0.00	0.00	44.27	4.85
2473	3579	2.182030	GCGAGCACTCTAACGCCT	59.818	61.111	0.00	0.00	44.27	5.52
2523	3636	1.740296	CTAGTTCCCCAACACGGCG	60.740	63.158	4.80	4.80	34.60	6.46
2524	3637	0.250597	AACTAGTTCCCCAACACGGC	60.251	55.000	1.12	0.00	34.60	5.68
2525	3638	1.804601	GAACTAGTTCCCCAACACGG	58.195	55.000	22.74	0.00	34.60	4.94
2642	3756	3.264104	GTTTACCTAGTTGCCGCATACA	58.736	45.455	0.00	0.00	0.00	2.29
2704	3818	3.071479	CTGGTTACCACTTACGTGCAAT	58.929	45.455	0.00	0.00	39.86	3.56
2709	3823	4.100808	TGTTTACCTGGTTACCACTTACGT	59.899	41.667	3.84	0.00	0.00	3.57
2714	3828	2.807837	GCGTGTTTACCTGGTTACCACT	60.808	50.000	3.84	0.00	0.00	4.00
2719	3833	2.428491	CCATGCGTGTTTACCTGGTTA	58.572	47.619	3.84	0.00	0.00	2.85
2734	3849	7.881142	TGTATGGTTAATTATAGTTGCCATGC	58.119	34.615	19.62	18.80	37.86	4.06
2747	3862	6.601613	ACCATCGTTGTCATGTATGGTTAATT	59.398	34.615	0.00	0.00	46.28	1.40
2817	3935	1.965643	ACTTGCCACATGTGCTCAAAT	59.034	42.857	20.81	12.81	0.00	2.32
2823	3941	4.155826	TGATTAACTACTTGCCACATGTGC	59.844	41.667	20.81	15.64	0.00	4.57
2850	3968	2.529151	CAATCAAACCATAGTTGCCGC	58.471	47.619	0.00	0.00	35.97	6.53
3012	4135	2.934886	AGCAAAAATGCCCACACATT	57.065	40.000	0.00	0.00	42.01	2.71
3014	4137	2.237393	GAAGCAAAAATGCCCACACA	57.763	45.000	0.00	0.00	34.90	3.72

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.