AutoCloner

Multiple sequence alignment - TraesCS7D01G351800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G351800	chr7D	100.000	3699	0	0	1	3699	452712981	452709283	0.000000e+00	6831
1	TraesCS7D01G351800	chr7B	94.232	2722	105	14	3	2705	475666305	475663617	0.000000e+00	4109
2	TraesCS7D01G351800	chr7A	95.409	2113	94	2	593	2703	545069630	545067519	0.000000e+00	3362
3	TraesCS7D01G351800	chr7A	90.000	590	33	10	1	571	545070193	545069611	0.000000e+00	739
4	TraesCS7D01G351800	chr7A	94.203	138	7	1	3562	3699	580841179	580841043	3.740000e-50	209
5	TraesCS7D01G351800	chr3D	97.731	617	13	1	2739	3355	139669732	139670347	0.000000e+00	1061
6	TraesCS7D01G351800	chr3D	97.407	617	15	1	2739	3355	139662125	139662740	0.000000e+00	1050
7	TraesCS7D01G351800	chr3D	96.350	137	5	0	3562	3698	247022829	247022693	3.720000e-55	226
8	TraesCS7D01G351800	chr5D	92.196	756	47	10	2950	3699	384272058	384272807	0.000000e+00	1059
9	TraesCS7D01G351800	chr5D	92.063	756	49	9	2950	3699	384280016	384280766	0.000000e+00	1053
10	TraesCS7D01G351800	chr5D	96.921	617	18	1	2739	3355	140536775	140537390	0.000000e+00	1033
11	TraesCS7D01G351800	chr2D	96.921	617	18	1	2739	3355	429986271	429986886	0.000000e+00	1033
12	TraesCS7D01G351800	chr2D	97.362	417	10	1	2739	3155	429993884	429994299	0.000000e+00	708
13	TraesCS7D01G351800	chr2D	96.753	308	9	1	3282	3589	347621528	347621222	2.550000e-141	512
14	TraesCS7D01G351800	chr2D	96.078	306	11	1	3284	3589	347628946	347628642	7.130000e-137	497
15	TraesCS7D01G351800	chr1D	94.907	589	27	3	2739	3325	345010968	345011555	0.000000e+00	918
16	TraesCS7D01G351800	chr6D	90.853	645	48	9	2950	3589	65883472	65884110	0.000000e+00	854
17	TraesCS7D01G351800	chr6D	90.543	645	50	9	2950	3589	65890973	65891611	0.000000e+00	843
18	TraesCS7D01G351800	chr6D	97.101	138	4	0	3562	3699	151918700	151918837	2.220000e-57	233
19	TraesCS7D01G351800	chr6D	96.377	138	4	1	3562	3699	151910832	151910968	3.720000e-55	226
20	TraesCS7D01G351800	chr4D	95.949	469	13	3	2889	3355	269283745	269284209	0.000000e+00	756
21	TraesCS7D01G351800	chr4D	96.536	433	14	1	2739	3171	385346862	385347293	0.000000e+00	715
22	TraesCS7D01G351800	chr4D	92.241	464	28	6	2738	3201	385340582	385341037	0.000000e+00	651
23	TraesCS7D01G351800	chr4D	95.779	308	12	1	3282	3589	244957187	244956881	2.570000e-136	496
24	TraesCS7D01G351800	chr4D	93.137	306	19	2	3285	3589	244949671	244949367	7.290000e-122	448
25	TraesCS7D01G351800	chr4D	95.620	137	4	1	3562	3698	232897657	232897523	6.220000e-53	219
26	TraesCS7D01G351800	chr2B	90.254	236	22	1	3354	3589	609339421	609339187	1.290000e-79	307
27	TraesCS7D01G351800	chr3A	94.928	138	6	1	3562	3699	365090619	365090483	8.050000e-52	215
28	TraesCS7D01G351800	chr6A	94.203	138	6	2	3562	3699	177001919	177002054	3.740000e-50	209

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G351800	chr7D	452709283	452712981	3698	True	6831.0	6831	100.0000	1	3699	1	chr7D.!!$R1	3698
1	TraesCS7D01G351800	chr7B	475663617	475666305	2688	True	4109.0	4109	94.2320	3	2705	1	chr7B.!!$R1	2702
2	TraesCS7D01G351800	chr7A	545067519	545070193	2674	True	2050.5	3362	92.7045	1	2703	2	chr7A.!!$R2	2702
3	TraesCS7D01G351800	chr3D	139669732	139670347	615	False	1061.0	1061	97.7310	2739	3355	1	chr3D.!!$F2	616
4	TraesCS7D01G351800	chr3D	139662125	139662740	615	False	1050.0	1050	97.4070	2739	3355	1	chr3D.!!$F1	616
5	TraesCS7D01G351800	chr5D	384272058	384272807	749	False	1059.0	1059	92.1960	2950	3699	1	chr5D.!!$F2	749
6	TraesCS7D01G351800	chr5D	384280016	384280766	750	False	1053.0	1053	92.0630	2950	3699	1	chr5D.!!$F3	749
7	TraesCS7D01G351800	chr5D	140536775	140537390	615	False	1033.0	1033	96.9210	2739	3355	1	chr5D.!!$F1	616
8	TraesCS7D01G351800	chr2D	429986271	429986886	615	False	1033.0	1033	96.9210	2739	3355	1	chr2D.!!$F1	616
9	TraesCS7D01G351800	chr1D	345010968	345011555	587	False	918.0	918	94.9070	2739	3325	1	chr1D.!!$F1	586
10	TraesCS7D01G351800	chr6D	65883472	65884110	638	False	854.0	854	90.8530	2950	3589	1	chr6D.!!$F1	639
11	TraesCS7D01G351800	chr6D	65890973	65891611	638	False	843.0	843	90.5430	2950	3589	1	chr6D.!!$F2	639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
164	183	1.409064	TGCCAGATCATAGGTGTCGAC	59.591	52.381	9.11	9.11	0.0	4.20	F
1174	1203	0.316204	CTTCACCTACCCGTTCGTGT	59.684	55.000	0.00	0.00	0.0	4.49	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1677	1706	0.465460	GTCCGGCAAAGGCATATCCA	60.465	55.0	0.0	0.0	43.71	3.41	R
2714	2743	0.032678	CGAACTGACTCACCACAGCT	59.967	55.0	0.0	0.0	37.61	4.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	1.963172	AACAAGAAAGGTGTCGTCCC	58.037	50.000	0.00	0.00	0.00	4.46
84	88	6.284459	GTCCCTGATGAACTAATGTCCTAAG	58.716	44.000	0.00	0.00	0.00	2.18
108	112	5.078411	ACGAGCTGATCAACTACTGAAAT	57.922	39.130	0.00	0.00	37.67	2.17
109	113	4.867047	ACGAGCTGATCAACTACTGAAATG	59.133	41.667	0.00	0.00	37.67	2.32
110	114	4.867047	CGAGCTGATCAACTACTGAAATGT	59.133	41.667	0.00	0.00	37.67	2.71
111	115	5.220359	CGAGCTGATCAACTACTGAAATGTG	60.220	44.000	0.00	0.00	37.67	3.21
112	116	5.798132	AGCTGATCAACTACTGAAATGTGA	58.202	37.500	0.00	0.00	37.67	3.58
113	117	5.873712	AGCTGATCAACTACTGAAATGTGAG	59.126	40.000	0.00	0.00	37.67	3.51
114	118	5.871524	GCTGATCAACTACTGAAATGTGAGA	59.128	40.000	0.00	0.00	37.67	3.27
115	119	6.538021	GCTGATCAACTACTGAAATGTGAGAT	59.462	38.462	0.00	0.00	37.67	2.75
117	121	8.484641	TGATCAACTACTGAAATGTGAGATTC	57.515	34.615	0.00	0.00	37.67	2.52
119	123	9.160496	GATCAACTACTGAAATGTGAGATTCTT	57.840	33.333	0.00	0.00	37.67	2.52
146	165	4.503741	TTGTTGTCTCCTAAATTGCTGC	57.496	40.909	0.00	0.00	0.00	5.25
156	175	5.311265	TCCTAAATTGCTGCCAGATCATAG	58.689	41.667	0.00	0.00	0.00	2.23
164	183	1.409064	TGCCAGATCATAGGTGTCGAC	59.591	52.381	9.11	9.11	0.00	4.20
167	186	2.357952	CCAGATCATAGGTGTCGACGAA	59.642	50.000	11.62	0.00	0.00	3.85
273	292	2.342648	GCGACCTCCACCGTTTCT	59.657	61.111	0.00	0.00	0.00	2.52
468	487	2.045242	CCCTCGTCCCTCGTCAGA	60.045	66.667	0.00	0.00	40.80	3.27
541	565	3.680842	GGTACTCAACCTATGCCCG	57.319	57.895	0.00	0.00	45.75	6.13
576	603	4.199310	AGAAGCCAAGCTGCGATAATAAA	58.801	39.130	0.00	0.00	39.64	1.40
577	604	4.640201	AGAAGCCAAGCTGCGATAATAAAA	59.360	37.500	0.00	0.00	39.64	1.52
578	605	4.981806	AGCCAAGCTGCGATAATAAAAA	57.018	36.364	0.00	0.00	37.57	1.94
855	882	4.242586	TCCCTCCCACCACCACGA	62.243	66.667	0.00	0.00	0.00	4.35
1174	1203	0.316204	CTTCACCTACCCGTTCGTGT	59.684	55.000	0.00	0.00	0.00	4.49
1212	1241	2.050350	CAAGCTACCGGTCGAGGGA	61.050	63.158	12.40	0.00	35.02	4.20
1392	1421	2.176273	CAGGTGCTATGTCAGGCGC	61.176	63.158	0.00	0.00	38.12	6.53
1446	1475	0.326238	AGATGGAAAGGGGCGGTCTA	60.326	55.000	0.00	0.00	0.00	2.59
1449	1478	1.449070	GGAAAGGGGCGGTCTAACG	60.449	63.158	0.00	0.00	0.00	3.18
1632	1661	2.383527	GGCGGTGAAGCTGTTCGAG	61.384	63.158	0.00	0.00	35.17	4.04
1659	1688	2.893637	CCGTCGAGGAACATCATTTCT	58.106	47.619	6.70	0.00	45.00	2.52
1677	1706	7.907389	TCATTTCTTGGACTATACTTGTGTCT	58.093	34.615	0.00	0.00	0.00	3.41
1704	1733	1.966451	CTTTGCCGGACAGGTGGAC	60.966	63.158	5.05	0.00	43.70	4.02
1827	1856	2.984471	GTCGTTGTTTCGAGACATGCTA	59.016	45.455	9.87	0.00	40.52	3.49
1968	1997	0.592637	TTGATGCAGTTCTTGGCACG	59.407	50.000	0.00	0.00	43.75	5.34
2013	2042	1.204704	TGTGGGCATGTAGAGAAGTCG	59.795	52.381	0.00	0.00	0.00	4.18
2035	2064	2.095718	GTGGAGGTCTTTGAACGAATGC	60.096	50.000	0.00	0.00	0.00	3.56
2055	2084	0.900647	AAGGCAGAGACACTACGGCT	60.901	55.000	0.00	0.00	0.00	5.52
2132	2161	4.941263	CGAATTGTTTGAGGGTATGGAGAA	59.059	41.667	0.00	0.00	0.00	2.87
2521	2550	2.037772	GCAAGTCGATGGGAGGATGTAT	59.962	50.000	0.00	0.00	0.00	2.29
2611	2640	3.303351	AGGGATACTGAAAATGGCAGG	57.697	47.619	0.00	0.00	37.69	4.85
2705	2734	5.425630	TGTGATCCATTGATCTGAGTTCAG	58.574	41.667	8.16	2.69	46.34	3.02
2719	2748	6.981762	CTGAGTTCAGATCAATTTAGCTGT	57.018	37.500	4.91	0.00	46.59	4.40
2720	2749	6.732531	TGAGTTCAGATCAATTTAGCTGTG	57.267	37.500	4.91	0.00	34.50	3.66
2721	2750	5.645067	TGAGTTCAGATCAATTTAGCTGTGG	59.355	40.000	4.91	0.00	34.50	4.17
2722	2751	5.564550	AGTTCAGATCAATTTAGCTGTGGT	58.435	37.500	4.91	0.00	34.50	4.16
2723	2752	5.413833	AGTTCAGATCAATTTAGCTGTGGTG	59.586	40.000	4.91	0.00	34.50	4.17
2724	2753	5.164620	TCAGATCAATTTAGCTGTGGTGA	57.835	39.130	4.91	0.00	34.50	4.02
2725	2754	5.181009	TCAGATCAATTTAGCTGTGGTGAG	58.819	41.667	4.91	0.00	34.50	3.51
2726	2755	4.940046	CAGATCAATTTAGCTGTGGTGAGT	59.060	41.667	0.00	0.00	0.00	3.41
2727	2756	5.064452	CAGATCAATTTAGCTGTGGTGAGTC	59.936	44.000	0.00	0.00	0.00	3.36
2728	2757	4.350368	TCAATTTAGCTGTGGTGAGTCA	57.650	40.909	0.00	0.00	0.00	3.41
2729	2758	4.318332	TCAATTTAGCTGTGGTGAGTCAG	58.682	43.478	0.00	0.00	35.12	3.51
2730	2759	4.067896	CAATTTAGCTGTGGTGAGTCAGT	58.932	43.478	0.00	0.00	34.57	3.41
2731	2760	3.838244	TTTAGCTGTGGTGAGTCAGTT	57.162	42.857	0.00	0.00	34.57	3.16
2732	2761	3.386768	TTAGCTGTGGTGAGTCAGTTC	57.613	47.619	0.00	0.00	34.57	3.01
2733	2762	0.032678	AGCTGTGGTGAGTCAGTTCG	59.967	55.000	0.00	0.00	34.57	3.95
2734	2763	0.249489	GCTGTGGTGAGTCAGTTCGT	60.249	55.000	0.00	0.00	34.57	3.85
2735	2764	1.806623	GCTGTGGTGAGTCAGTTCGTT	60.807	52.381	0.00	0.00	34.57	3.85
2736	2765	2.545113	GCTGTGGTGAGTCAGTTCGTTA	60.545	50.000	0.00	0.00	34.57	3.18
2737	2766	3.713288	CTGTGGTGAGTCAGTTCGTTAA	58.287	45.455	0.00	0.00	0.00	2.01
3456	3492	0.179073	CTTCCATCGATCCAAGCCGT	60.179	55.000	0.00	0.00	0.00	5.68

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	1.129058	AGGGACGACACCTTTCTTGT	58.871	50.000	0.00	0.00	33.64	3.16
47	48	1.070134	TCAGGGACGACACCTTTCTTG	59.930	52.381	0.00	0.00	35.78	3.02
49	50	1.276421	CATCAGGGACGACACCTTTCT	59.724	52.381	0.00	0.00	35.78	2.52
50	51	1.275291	TCATCAGGGACGACACCTTTC	59.725	52.381	0.00	0.00	35.78	2.62
53	54	0.608640	GTTCATCAGGGACGACACCT	59.391	55.000	0.00	0.00	39.43	4.00
64	65	7.258441	TCGTTCTTAGGACATTAGTTCATCAG	58.742	38.462	0.00	0.00	0.00	2.90
84	88	4.098055	TCAGTAGTTGATCAGCTCGTTC	57.902	45.455	16.01	5.75	0.00	3.95
108	112	8.908786	AGACAACAAAGAATAAGAATCTCACA	57.091	30.769	0.00	0.00	0.00	3.58
109	113	8.447053	GGAGACAACAAAGAATAAGAATCTCAC	58.553	37.037	0.00	0.00	32.34	3.51
110	114	8.378565	AGGAGACAACAAAGAATAAGAATCTCA	58.621	33.333	0.00	0.00	32.34	3.27
111	115	8.785329	AGGAGACAACAAAGAATAAGAATCTC	57.215	34.615	0.00	0.00	0.00	2.75
117	121	9.346725	GCAATTTAGGAGACAACAAAGAATAAG	57.653	33.333	0.00	0.00	0.00	1.73
119	123	8.514594	CAGCAATTTAGGAGACAACAAAGAATA	58.485	33.333	0.00	0.00	0.00	1.75
131	150	3.200605	TGATCTGGCAGCAATTTAGGAGA	59.799	43.478	10.34	0.00	0.00	3.71
146	165	1.947456	TCGTCGACACCTATGATCTGG	59.053	52.381	17.16	0.00	0.00	3.86
156	175	4.209703	TGAGTTACAAATTTCGTCGACACC	59.790	41.667	17.16	0.00	0.00	4.16
164	183	4.452455	AGCTCAGGTGAGTTACAAATTTCG	59.548	41.667	8.74	0.00	43.85	3.46
167	186	5.376625	TCAAGCTCAGGTGAGTTACAAATT	58.623	37.500	8.74	0.00	43.85	1.82
210	229	1.136774	CTGCACTTCGTCGATCCGA	59.863	57.895	0.00	0.00	34.52	4.55
326	345	4.668118	TTTCGGACACGGACGGCC	62.668	66.667	0.00	0.00	41.39	6.13
450	469	3.827898	CTGACGAGGGACGAGGGC	61.828	72.222	0.00	0.00	45.77	5.19
541	565	3.177997	TGGCTTCTTTGTTTTCCTTGC	57.822	42.857	0.00	0.00	0.00	4.01
576	603	6.070251	TGGCTTCTTCCTTTTCTTTTCCTTTT	60.070	34.615	0.00	0.00	0.00	2.27
577	604	5.425217	TGGCTTCTTCCTTTTCTTTTCCTTT	59.575	36.000	0.00	0.00	0.00	3.11
578	605	4.962362	TGGCTTCTTCCTTTTCTTTTCCTT	59.038	37.500	0.00	0.00	0.00	3.36
579	606	4.546674	TGGCTTCTTCCTTTTCTTTTCCT	58.453	39.130	0.00	0.00	0.00	3.36
580	607	4.937201	TGGCTTCTTCCTTTTCTTTTCC	57.063	40.909	0.00	0.00	0.00	3.13
581	608	4.747108	GCTTGGCTTCTTCCTTTTCTTTTC	59.253	41.667	0.00	0.00	0.00	2.29
582	609	4.406972	AGCTTGGCTTCTTCCTTTTCTTTT	59.593	37.500	0.00	0.00	33.89	2.27
583	610	3.963374	AGCTTGGCTTCTTCCTTTTCTTT	59.037	39.130	0.00	0.00	33.89	2.52
584	611	3.570540	AGCTTGGCTTCTTCCTTTTCTT	58.429	40.909	0.00	0.00	33.89	2.52
585	612	3.235750	AGCTTGGCTTCTTCCTTTTCT	57.764	42.857	0.00	0.00	33.89	2.52
586	613	3.646946	CAAGCTTGGCTTCTTCCTTTTC	58.353	45.455	19.14	0.00	46.77	2.29
587	614	2.224137	GCAAGCTTGGCTTCTTCCTTTT	60.224	45.455	27.10	0.00	46.77	2.27
588	615	1.342496	GCAAGCTTGGCTTCTTCCTTT	59.658	47.619	27.10	0.00	46.77	3.11
591	618	1.211190	CGCAAGCTTGGCTTCTTCC	59.789	57.895	27.10	7.42	46.77	3.46
872	899	1.646189	GAGAAACGATGGCTCCTGAC	58.354	55.000	0.00	0.00	0.00	3.51
1102	1131	0.736636	TAGTAGACCGCCATGACACG	59.263	55.000	0.00	0.00	0.00	4.49
1103	1132	1.533338	CGTAGTAGACCGCCATGACAC	60.533	57.143	0.00	0.00	0.00	3.67
1174	1203	4.424711	GGCACCGATGGCCCTGAA	62.425	66.667	0.00	0.00	45.87	3.02
1392	1421	2.556287	GCTTCTGTGTTTCGGCCG	59.444	61.111	22.12	22.12	0.00	6.13
1461	1490	2.943345	GAGTGCGGTCAACAGCGTG	61.943	63.158	1.00	0.00	45.59	5.34
1465	1494	2.310233	CGGTGAGTGCGGTCAACAG	61.310	63.158	4.23	0.00	33.34	3.16
1632	1661	1.153353	TGTTCCTCGACGGCATTTTC	58.847	50.000	0.00	0.00	0.00	2.29
1659	1688	7.686859	GCATATCCAGACACAAGTATAGTCCAA	60.687	40.741	0.00	0.00	32.82	3.53
1677	1706	0.465460	GTCCGGCAAAGGCATATCCA	60.465	55.000	0.00	0.00	43.71	3.41
1704	1733	3.190874	GTGGAAGAGTAATCTCGCCTTG	58.809	50.000	11.73	0.00	44.65	3.61
1827	1856	2.490903	GTCTGGCTCAACTTGATGCATT	59.509	45.455	0.00	0.00	0.00	3.56
1968	1997	2.095567	GGCATACATGTCGATCAATGCC	60.096	50.000	24.86	24.86	44.96	4.40
2013	2042	2.249844	TTCGTTCAAAGACCTCCACC	57.750	50.000	0.00	0.00	0.00	4.61
2035	2064	0.737715	GCCGTAGTGTCTCTGCCTTG	60.738	60.000	0.00	0.00	0.00	3.61
2123	2152	5.277047	GCTTAGCATTGCTTTTCTCCATAC	58.723	41.667	17.71	0.00	40.44	2.39
2132	2161	2.490903	CTGTCAGGCTTAGCATTGCTTT	59.509	45.455	17.71	0.00	40.44	3.51
2521	2550	4.225042	TGCCATCTTGCTCCTTACTCTTAA	59.775	41.667	0.00	0.00	0.00	1.85
2611	2640	1.466167	CACTAGATGTGCAAGTGCCAC	59.534	52.381	2.70	0.00	40.06	5.01
2705	2734	4.937620	TGACTCACCACAGCTAAATTGATC	59.062	41.667	0.00	0.00	0.00	2.92
2706	2735	4.910195	TGACTCACCACAGCTAAATTGAT	58.090	39.130	0.00	0.00	0.00	2.57
2707	2736	4.202357	ACTGACTCACCACAGCTAAATTGA	60.202	41.667	0.00	0.00	37.61	2.57
2708	2737	4.067896	ACTGACTCACCACAGCTAAATTG	58.932	43.478	0.00	0.00	37.61	2.32
2709	2738	4.357918	ACTGACTCACCACAGCTAAATT	57.642	40.909	0.00	0.00	37.61	1.82
2710	2739	4.319177	GAACTGACTCACCACAGCTAAAT	58.681	43.478	0.00	0.00	37.61	1.40
2711	2740	3.728845	GAACTGACTCACCACAGCTAAA	58.271	45.455	0.00	0.00	37.61	1.85
2712	2741	2.288213	CGAACTGACTCACCACAGCTAA	60.288	50.000	0.00	0.00	37.61	3.09
2713	2742	1.269723	CGAACTGACTCACCACAGCTA	59.730	52.381	0.00	0.00	37.61	3.32
2714	2743	0.032678	CGAACTGACTCACCACAGCT	59.967	55.000	0.00	0.00	37.61	4.24
2715	2744	0.249489	ACGAACTGACTCACCACAGC	60.249	55.000	0.00	0.00	37.61	4.40
2716	2745	2.225068	AACGAACTGACTCACCACAG	57.775	50.000	0.00	0.00	39.65	3.66
2717	2746	3.804786	TTAACGAACTGACTCACCACA	57.195	42.857	0.00	0.00	0.00	4.17
2718	2747	4.056050	ACATTAACGAACTGACTCACCAC	58.944	43.478	0.00	0.00	0.00	4.16
2719	2748	4.330944	ACATTAACGAACTGACTCACCA	57.669	40.909	0.00	0.00	0.00	4.17
2720	2749	6.149504	GTTACATTAACGAACTGACTCACC	57.850	41.667	0.00	0.00	0.00	4.02
2733	2762	2.421073	GGTCTTGGGGCGTTACATTAAC	59.579	50.000	0.00	0.00	35.37	2.01
2734	2763	2.713877	GGTCTTGGGGCGTTACATTAA	58.286	47.619	0.00	0.00	0.00	1.40
2735	2764	1.405797	CGGTCTTGGGGCGTTACATTA	60.406	52.381	0.00	0.00	0.00	1.90
2736	2765	0.675522	CGGTCTTGGGGCGTTACATT	60.676	55.000	0.00	0.00	0.00	2.71
2737	2766	1.078708	CGGTCTTGGGGCGTTACAT	60.079	57.895	0.00	0.00	0.00	2.29
3058	3088	8.164119	AGGGAGTCCAATTAAGAAAACGGAGT	62.164	42.308	12.30	0.00	37.89	3.85
3456	3492	1.613630	GAGGAGGAAGGGGCACAGA	60.614	63.158	0.00	0.00	0.00	3.41
3592	3628	2.786495	CGGCTAGTGGCATCGAGGT	61.786	63.158	0.00	0.00	44.01	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.