Multiple sequence alignment - TraesCS7D01G350800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G350800 chr7D 100.000 2492 0 0 1 2492 451884253 451881762 0.000000e+00 4602.0
1 TraesCS7D01G350800 chr7A 89.817 1090 54 23 478 1535 545607956 545609020 0.000000e+00 1345.0
2 TraesCS7D01G350800 chr7A 84.817 382 30 12 2119 2492 545616313 545616674 2.360000e-95 359.0
3 TraesCS7D01G350800 chr7A 83.209 268 17 9 1563 1814 545609018 545609273 1.160000e-53 220.0
4 TraesCS7D01G350800 chr7A 92.308 104 6 1 1812 1913 545616213 545616316 2.000000e-31 147.0
5 TraesCS7D01G350800 chr7A 88.462 78 6 3 406 481 112786274 112786350 9.490000e-15 91.6
6 TraesCS7D01G350800 chr7B 93.591 905 30 13 479 1378 474275584 474274703 0.000000e+00 1325.0
7 TraesCS7D01G350800 chr7B 90.426 846 48 17 1370 2193 474258655 474257821 0.000000e+00 1083.0
8 TraesCS7D01G350800 chr7B 97.015 134 3 1 2359 2492 474257510 474257378 8.970000e-55 224.0
9 TraesCS7D01G350800 chr6B 92.381 315 20 3 1 314 433074737 433074426 1.760000e-121 446.0
10 TraesCS7D01G350800 chr6B 88.158 76 8 1 406 480 25975184 25975109 3.410000e-14 89.8
11 TraesCS7D01G350800 chr6B 88.000 75 8 1 406 479 684940324 684940398 1.230000e-13 87.9
12 TraesCS7D01G350800 chr1B 92.063 315 21 3 1 314 636688634 636688945 8.180000e-120 440.0
13 TraesCS7D01G350800 chr1B 91.429 315 26 1 1 314 142040506 142040820 4.920000e-117 431.0
14 TraesCS7D01G350800 chr1B 89.524 315 31 2 1 314 141868220 141868533 4.990000e-107 398.0
15 TraesCS7D01G350800 chr1B 88.462 78 8 1 406 482 572529381 572529458 2.640000e-15 93.5
16 TraesCS7D01G350800 chr1B 100.000 29 0 0 338 366 613325276 613325248 1.000000e-03 54.7
17 TraesCS7D01G350800 chr3B 91.746 315 22 3 1 314 638335505 638335816 3.810000e-118 435.0
18 TraesCS7D01G350800 chr3B 89.206 315 33 1 1 314 535702664 535702350 2.320000e-105 392.0
19 TraesCS7D01G350800 chr3B 97.297 37 1 0 330 366 116096907 116096943 2.070000e-06 63.9
20 TraesCS7D01G350800 chr1D 85.531 311 39 6 1 308 396882461 396882154 1.110000e-83 320.0
21 TraesCS7D01G350800 chr2D 83.758 314 45 3 4 315 643803509 643803200 2.420000e-75 292.0
22 TraesCS7D01G350800 chr2A 83.067 313 52 1 4 315 768680543 768680231 1.460000e-72 283.0
23 TraesCS7D01G350800 chr2A 89.130 46 2 3 2074 2117 766964950 766964994 1.000000e-03 54.7
24 TraesCS7D01G350800 chr2A 100.000 28 0 0 2074 2101 651997420 651997393 4.000000e-03 52.8
25 TraesCS7D01G350800 chr5B 81.875 320 53 3 1 315 38758617 38758936 5.280000e-67 265.0
26 TraesCS7D01G350800 chr4A 90.667 75 6 1 406 479 121501248 121501322 5.670000e-17 99.0
27 TraesCS7D01G350800 chr4A 88.312 77 8 1 406 481 594133311 594133387 9.490000e-15 91.6
28 TraesCS7D01G350800 chr4A 94.737 38 2 0 329 366 666274580 666274617 2.680000e-05 60.2
29 TraesCS7D01G350800 chr4D 88.312 77 8 1 406 481 375134996 375134920 9.490000e-15 91.6
30 TraesCS7D01G350800 chr6D 88.000 75 8 1 406 479 427000473 427000399 1.230000e-13 87.9
31 TraesCS7D01G350800 chr5D 87.179 78 9 1 406 482 34876306 34876229 1.230000e-13 87.9
32 TraesCS7D01G350800 chr3D 80.000 95 14 4 1942 2031 445016511 445016417 5.750000e-07 65.8
33 TraesCS7D01G350800 chr4B 100.000 34 0 0 335 368 665970659 665970626 2.070000e-06 63.9
34 TraesCS7D01G350800 chr5A 94.595 37 1 1 2069 2104 617128221 617128185 3.460000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G350800 chr7D 451881762 451884253 2491 True 4602.0 4602 100.0000 1 2492 1 chr7D.!!$R1 2491
1 TraesCS7D01G350800 chr7A 545607956 545609273 1317 False 782.5 1345 86.5130 478 1814 2 chr7A.!!$F2 1336
2 TraesCS7D01G350800 chr7B 474274703 474275584 881 True 1325.0 1325 93.5910 479 1378 1 chr7B.!!$R1 899
3 TraesCS7D01G350800 chr7B 474257378 474258655 1277 True 653.5 1083 93.7205 1370 2492 2 chr7B.!!$R2 1122

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 253 0.035056 AGGATCTTGGCTTTCACCCG 60.035 55.0 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2211 2269 0.035056 AGATTAGCCTTGGCGTTGCT 60.035 50.0 5.95 0.68 39.1 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.474806 GAACATGCCAGACGGTCG 58.525 61.111 1.89 0.00 33.28 4.79
18 19 1.080093 GAACATGCCAGACGGTCGA 60.080 57.895 1.89 0.00 33.28 4.20
19 20 1.352156 GAACATGCCAGACGGTCGAC 61.352 60.000 7.13 7.13 33.28 4.20
32 33 2.430244 TCGACGACGAAGGCAAGC 60.430 61.111 7.68 0.00 45.74 4.01
33 34 3.479269 CGACGACGAAGGCAAGCC 61.479 66.667 0.00 2.02 42.66 4.35
34 35 2.357034 GACGACGAAGGCAAGCCA 60.357 61.111 14.40 0.00 38.92 4.75
35 36 1.741770 GACGACGAAGGCAAGCCAT 60.742 57.895 14.40 0.00 38.92 4.40
36 37 1.970917 GACGACGAAGGCAAGCCATG 61.971 60.000 14.40 4.84 38.92 3.66
37 38 1.741401 CGACGAAGGCAAGCCATGA 60.741 57.895 14.40 0.00 38.92 3.07
38 39 1.796796 GACGAAGGCAAGCCATGAC 59.203 57.895 14.40 0.00 38.92 3.06
39 40 1.648467 GACGAAGGCAAGCCATGACC 61.648 60.000 14.40 0.00 38.06 4.02
40 41 2.409870 CGAAGGCAAGCCATGACCC 61.410 63.158 14.40 0.00 38.06 4.46
41 42 1.000396 GAAGGCAAGCCATGACCCT 60.000 57.895 14.40 0.00 38.06 4.34
42 43 1.304713 AAGGCAAGCCATGACCCTG 60.305 57.895 14.40 0.00 38.06 4.45
43 44 3.455469 GGCAAGCCATGACCCTGC 61.455 66.667 6.14 0.00 35.81 4.85
44 45 2.362120 GCAAGCCATGACCCTGCT 60.362 61.111 0.00 0.00 36.79 4.24
45 46 2.413142 GCAAGCCATGACCCTGCTC 61.413 63.158 0.00 0.00 33.36 4.26
46 47 1.001764 CAAGCCATGACCCTGCTCA 60.002 57.895 0.00 0.00 33.36 4.26
47 48 0.395311 CAAGCCATGACCCTGCTCAT 60.395 55.000 0.00 0.00 33.36 2.90
48 49 0.106819 AAGCCATGACCCTGCTCATC 60.107 55.000 0.00 0.00 33.36 2.92
49 50 0.987081 AGCCATGACCCTGCTCATCT 60.987 55.000 0.00 0.00 0.00 2.90
50 51 0.106819 GCCATGACCCTGCTCATCTT 60.107 55.000 0.00 0.00 0.00 2.40
51 52 1.676746 CCATGACCCTGCTCATCTTG 58.323 55.000 0.00 0.00 0.00 3.02
52 53 1.022735 CATGACCCTGCTCATCTTGC 58.977 55.000 0.00 0.00 0.00 4.01
53 54 0.622136 ATGACCCTGCTCATCTTGCA 59.378 50.000 0.00 0.00 38.81 4.08
54 55 0.401356 TGACCCTGCTCATCTTGCAA 59.599 50.000 0.00 0.00 40.13 4.08
55 56 0.807496 GACCCTGCTCATCTTGCAAC 59.193 55.000 0.00 0.00 40.13 4.17
56 57 0.610232 ACCCTGCTCATCTTGCAACC 60.610 55.000 0.00 0.00 40.13 3.77
57 58 0.609957 CCCTGCTCATCTTGCAACCA 60.610 55.000 0.00 0.00 40.13 3.67
58 59 1.471119 CCTGCTCATCTTGCAACCAT 58.529 50.000 0.00 0.00 40.13 3.55
59 60 1.404391 CCTGCTCATCTTGCAACCATC 59.596 52.381 0.00 0.00 40.13 3.51
60 61 2.089201 CTGCTCATCTTGCAACCATCA 58.911 47.619 0.00 0.00 40.13 3.07
61 62 2.688446 CTGCTCATCTTGCAACCATCAT 59.312 45.455 0.00 0.00 40.13 2.45
62 63 2.686405 TGCTCATCTTGCAACCATCATC 59.314 45.455 0.00 0.00 37.51 2.92
63 64 2.286831 GCTCATCTTGCAACCATCATCG 60.287 50.000 0.00 0.00 0.00 3.84
64 65 2.941064 CTCATCTTGCAACCATCATCGT 59.059 45.455 0.00 0.00 0.00 3.73
65 66 2.679336 TCATCTTGCAACCATCATCGTG 59.321 45.455 0.00 0.00 0.00 4.35
66 67 0.804364 TCTTGCAACCATCATCGTGC 59.196 50.000 0.00 0.00 37.51 5.34
67 68 0.179156 CTTGCAACCATCATCGTGCC 60.179 55.000 0.00 0.00 36.12 5.01
68 69 0.892814 TTGCAACCATCATCGTGCCA 60.893 50.000 0.00 0.00 36.12 4.92
69 70 1.137404 GCAACCATCATCGTGCCAC 59.863 57.895 0.00 0.00 0.00 5.01
70 71 1.585267 GCAACCATCATCGTGCCACA 61.585 55.000 0.00 0.00 0.00 4.17
71 72 0.168788 CAACCATCATCGTGCCACAC 59.831 55.000 0.00 0.00 0.00 3.82
72 73 0.250684 AACCATCATCGTGCCACACA 60.251 50.000 0.00 0.00 33.40 3.72
73 74 0.250684 ACCATCATCGTGCCACACAA 60.251 50.000 0.00 0.00 33.40 3.33
74 75 0.448990 CCATCATCGTGCCACACAAG 59.551 55.000 0.00 0.00 33.40 3.16
75 76 1.159285 CATCATCGTGCCACACAAGT 58.841 50.000 0.00 0.00 33.40 3.16
76 77 1.129251 CATCATCGTGCCACACAAGTC 59.871 52.381 0.00 0.00 33.40 3.01
77 78 0.943835 TCATCGTGCCACACAAGTCG 60.944 55.000 0.00 0.00 33.40 4.18
78 79 2.317609 ATCGTGCCACACAAGTCGC 61.318 57.895 0.00 0.00 33.40 5.19
79 80 2.987282 ATCGTGCCACACAAGTCGCA 62.987 55.000 0.00 0.00 39.60 5.10
80 81 2.818487 CGTGCCACACAAGTCGCAA 61.818 57.895 0.00 0.00 43.43 4.85
81 82 1.298339 GTGCCACACAAGTCGCAAC 60.298 57.895 0.00 0.00 43.43 4.17
82 83 2.052237 GCCACACAAGTCGCAACG 60.052 61.111 0.00 0.00 31.68 4.10
83 84 2.052237 CCACACAAGTCGCAACGC 60.052 61.111 0.00 0.00 0.00 4.84
84 85 2.052237 CACACAAGTCGCAACGCC 60.052 61.111 0.00 0.00 0.00 5.68
85 86 2.512745 ACACAAGTCGCAACGCCA 60.513 55.556 0.00 0.00 0.00 5.69
86 87 2.052237 CACAAGTCGCAACGCCAC 60.052 61.111 0.00 0.00 0.00 5.01
87 88 2.512745 ACAAGTCGCAACGCCACA 60.513 55.556 0.00 0.00 0.00 4.17
88 89 1.891919 ACAAGTCGCAACGCCACAT 60.892 52.632 0.00 0.00 0.00 3.21
89 90 1.154413 CAAGTCGCAACGCCACATC 60.154 57.895 0.00 0.00 0.00 3.06
90 91 2.325082 AAGTCGCAACGCCACATCC 61.325 57.895 0.00 0.00 0.00 3.51
91 92 4.147322 GTCGCAACGCCACATCCG 62.147 66.667 0.00 0.00 0.00 4.18
94 95 4.759096 GCAACGCCACATCCGCAC 62.759 66.667 0.00 0.00 0.00 5.34
95 96 4.101790 CAACGCCACATCCGCACC 62.102 66.667 0.00 0.00 0.00 5.01
122 123 4.760047 GCACCTGCCGACCACGAT 62.760 66.667 0.00 0.00 42.66 3.73
123 124 2.815211 CACCTGCCGACCACGATG 60.815 66.667 0.00 0.00 42.66 3.84
124 125 3.311110 ACCTGCCGACCACGATGT 61.311 61.111 0.00 0.00 42.66 3.06
125 126 2.509336 CCTGCCGACCACGATGTC 60.509 66.667 0.00 0.00 42.66 3.06
136 137 2.430075 CGATGTCGTGCACGTCCA 60.430 61.111 35.74 30.92 37.72 4.02
137 138 2.436539 CGATGTCGTGCACGTCCAG 61.437 63.158 35.74 21.08 37.72 3.86
138 139 2.730672 GATGTCGTGCACGTCCAGC 61.731 63.158 35.74 29.65 40.80 4.85
139 140 4.961511 TGTCGTGCACGTCCAGCC 62.962 66.667 35.74 18.60 40.80 4.85
156 157 4.198625 CGCAAGGAAGAGCAGGAG 57.801 61.111 0.00 0.00 0.00 3.69
157 158 1.449246 CGCAAGGAAGAGCAGGAGG 60.449 63.158 0.00 0.00 0.00 4.30
158 159 1.077858 GCAAGGAAGAGCAGGAGGG 60.078 63.158 0.00 0.00 0.00 4.30
159 160 1.557269 GCAAGGAAGAGCAGGAGGGA 61.557 60.000 0.00 0.00 0.00 4.20
160 161 1.211456 CAAGGAAGAGCAGGAGGGAT 58.789 55.000 0.00 0.00 0.00 3.85
161 162 1.140652 CAAGGAAGAGCAGGAGGGATC 59.859 57.143 0.00 0.00 0.00 3.36
162 163 0.341258 AGGAAGAGCAGGAGGGATCA 59.659 55.000 0.00 0.00 0.00 2.92
163 164 0.467804 GGAAGAGCAGGAGGGATCAC 59.532 60.000 0.00 0.00 0.00 3.06
164 165 0.103937 GAAGAGCAGGAGGGATCACG 59.896 60.000 0.00 0.00 0.00 4.35
165 166 1.333636 AAGAGCAGGAGGGATCACGG 61.334 60.000 0.00 0.00 0.00 4.94
166 167 2.039624 AGCAGGAGGGATCACGGT 59.960 61.111 0.00 0.00 0.00 4.83
167 168 2.022240 GAGCAGGAGGGATCACGGTC 62.022 65.000 0.00 0.00 0.00 4.79
168 169 2.060980 GCAGGAGGGATCACGGTCT 61.061 63.158 0.00 0.00 0.00 3.85
169 170 1.617947 GCAGGAGGGATCACGGTCTT 61.618 60.000 0.00 0.00 0.00 3.01
170 171 0.461961 CAGGAGGGATCACGGTCTTC 59.538 60.000 0.00 0.00 0.00 2.87
171 172 0.041238 AGGAGGGATCACGGTCTTCA 59.959 55.000 0.00 0.00 0.00 3.02
172 173 0.902531 GGAGGGATCACGGTCTTCAA 59.097 55.000 0.00 0.00 0.00 2.69
173 174 1.134670 GGAGGGATCACGGTCTTCAAG 60.135 57.143 0.00 0.00 0.00 3.02
174 175 1.825474 GAGGGATCACGGTCTTCAAGA 59.175 52.381 0.00 0.00 0.00 3.02
175 176 1.550976 AGGGATCACGGTCTTCAAGAC 59.449 52.381 9.27 9.27 44.32 3.01
176 177 1.630148 GGATCACGGTCTTCAAGACG 58.370 55.000 11.52 9.27 45.96 4.18
177 178 1.630148 GATCACGGTCTTCAAGACGG 58.370 55.000 20.53 20.53 45.96 4.79
178 179 0.389948 ATCACGGTCTTCAAGACGGC 60.390 55.000 21.72 4.59 45.96 5.68
179 180 2.049433 ACGGTCTTCAAGACGGCG 60.049 61.111 21.72 17.23 45.96 6.46
180 181 3.479269 CGGTCTTCAAGACGGCGC 61.479 66.667 11.52 0.00 45.96 6.53
181 182 3.119096 GGTCTTCAAGACGGCGCC 61.119 66.667 19.07 19.07 45.96 6.53
182 183 3.119096 GTCTTCAAGACGGCGCCC 61.119 66.667 23.46 7.92 35.28 6.13
183 184 4.388499 TCTTCAAGACGGCGCCCC 62.388 66.667 23.46 13.55 0.00 5.80
201 202 2.206635 CCAAGAGGGAGAGCGATGT 58.793 57.895 0.00 0.00 40.01 3.06
202 203 0.539051 CCAAGAGGGAGAGCGATGTT 59.461 55.000 0.00 0.00 40.01 2.71
203 204 1.649664 CAAGAGGGAGAGCGATGTTG 58.350 55.000 0.00 0.00 0.00 3.33
204 205 0.539051 AAGAGGGAGAGCGATGTTGG 59.461 55.000 0.00 0.00 0.00 3.77
205 206 0.324738 AGAGGGAGAGCGATGTTGGA 60.325 55.000 0.00 0.00 0.00 3.53
206 207 0.103937 GAGGGAGAGCGATGTTGGAG 59.896 60.000 0.00 0.00 0.00 3.86
207 208 0.324738 AGGGAGAGCGATGTTGGAGA 60.325 55.000 0.00 0.00 0.00 3.71
208 209 0.179097 GGGAGAGCGATGTTGGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
209 210 0.526524 GGAGAGCGATGTTGGAGACG 60.527 60.000 0.00 0.00 0.00 4.18
210 211 0.452184 GAGAGCGATGTTGGAGACGA 59.548 55.000 0.00 0.00 0.00 4.20
211 212 0.171455 AGAGCGATGTTGGAGACGAC 59.829 55.000 0.00 0.00 45.61 4.34
217 218 3.112709 GTTGGAGACGACGCTGCC 61.113 66.667 0.00 0.00 34.37 4.85
218 219 4.717629 TTGGAGACGACGCTGCCG 62.718 66.667 0.00 0.00 41.14 5.69
230 231 4.776322 CTGCCGCCCGATCCAACA 62.776 66.667 0.00 0.00 0.00 3.33
231 232 4.776322 TGCCGCCCGATCCAACAG 62.776 66.667 0.00 0.00 0.00 3.16
233 234 4.776322 CCGCCCGATCCAACAGCA 62.776 66.667 0.00 0.00 0.00 4.41
234 235 3.197790 CGCCCGATCCAACAGCAG 61.198 66.667 0.00 0.00 0.00 4.24
235 236 2.825836 GCCCGATCCAACAGCAGG 60.826 66.667 0.00 0.00 0.00 4.85
236 237 2.989639 CCCGATCCAACAGCAGGA 59.010 61.111 0.00 0.00 39.97 3.86
242 243 2.431954 ATCCAACAGCAGGATCTTGG 57.568 50.000 6.99 4.97 42.07 3.61
243 244 0.322816 TCCAACAGCAGGATCTTGGC 60.323 55.000 6.99 1.47 34.29 4.52
244 245 0.323178 CCAACAGCAGGATCTTGGCT 60.323 55.000 6.99 3.86 38.70 4.75
245 246 1.542492 CAACAGCAGGATCTTGGCTT 58.458 50.000 6.99 0.00 35.27 4.35
246 247 1.891150 CAACAGCAGGATCTTGGCTTT 59.109 47.619 6.99 0.00 35.27 3.51
247 248 1.831580 ACAGCAGGATCTTGGCTTTC 58.168 50.000 6.99 0.00 35.27 2.62
248 249 1.074405 ACAGCAGGATCTTGGCTTTCA 59.926 47.619 6.99 0.00 35.27 2.69
249 250 1.471684 CAGCAGGATCTTGGCTTTCAC 59.528 52.381 6.99 0.00 35.27 3.18
250 251 0.813821 GCAGGATCTTGGCTTTCACC 59.186 55.000 6.99 0.00 0.00 4.02
251 252 1.467920 CAGGATCTTGGCTTTCACCC 58.532 55.000 0.00 0.00 0.00 4.61
252 253 0.035056 AGGATCTTGGCTTTCACCCG 60.035 55.000 0.00 0.00 0.00 5.28
253 254 0.035439 GGATCTTGGCTTTCACCCGA 60.035 55.000 0.00 0.00 0.00 5.14
254 255 1.613255 GGATCTTGGCTTTCACCCGAA 60.613 52.381 0.00 0.00 0.00 4.30
255 256 1.740025 GATCTTGGCTTTCACCCGAAG 59.260 52.381 0.00 0.00 31.28 3.79
256 257 0.762418 TCTTGGCTTTCACCCGAAGA 59.238 50.000 0.00 0.00 31.28 2.87
257 258 1.160137 CTTGGCTTTCACCCGAAGAG 58.840 55.000 0.00 0.00 31.28 2.85
258 259 0.889186 TTGGCTTTCACCCGAAGAGC 60.889 55.000 0.00 0.00 35.91 4.09
259 260 1.003233 GGCTTTCACCCGAAGAGCT 60.003 57.895 0.00 0.00 36.42 4.09
260 261 1.021920 GGCTTTCACCCGAAGAGCTC 61.022 60.000 5.27 5.27 36.42 4.09
273 274 4.749245 GAAGAGCTCGATCTAGGAGAAG 57.251 50.000 8.37 0.00 33.27 2.85
274 275 4.385825 GAAGAGCTCGATCTAGGAGAAGA 58.614 47.826 8.37 0.00 33.27 2.87
275 276 4.008074 AGAGCTCGATCTAGGAGAAGAG 57.992 50.000 8.37 7.55 36.67 2.85
276 277 3.074412 GAGCTCGATCTAGGAGAAGAGG 58.926 54.545 0.00 0.00 35.22 3.69
277 278 2.708861 AGCTCGATCTAGGAGAAGAGGA 59.291 50.000 11.69 0.00 35.22 3.71
278 279 3.330701 AGCTCGATCTAGGAGAAGAGGAT 59.669 47.826 11.69 0.00 35.22 3.24
279 280 3.440173 GCTCGATCTAGGAGAAGAGGATG 59.560 52.174 11.69 0.00 35.22 3.51
280 281 3.417101 TCGATCTAGGAGAAGAGGATGC 58.583 50.000 0.00 0.00 0.00 3.91
281 282 2.161410 CGATCTAGGAGAAGAGGATGCG 59.839 54.545 0.00 0.00 0.00 4.73
282 283 1.323412 TCTAGGAGAAGAGGATGCGC 58.677 55.000 0.00 0.00 0.00 6.09
283 284 0.039617 CTAGGAGAAGAGGATGCGCG 60.040 60.000 0.00 0.00 0.00 6.86
284 285 1.456196 TAGGAGAAGAGGATGCGCGG 61.456 60.000 8.83 0.00 0.00 6.46
285 286 2.786495 GGAGAAGAGGATGCGCGGA 61.786 63.158 8.83 5.00 0.00 5.54
286 287 1.365633 GAGAAGAGGATGCGCGGAT 59.634 57.895 14.75 14.75 0.00 4.18
287 288 0.665972 GAGAAGAGGATGCGCGGATC 60.666 60.000 29.89 29.89 0.00 3.36
288 289 1.112315 AGAAGAGGATGCGCGGATCT 61.112 55.000 34.43 22.65 0.00 2.75
289 290 0.665972 GAAGAGGATGCGCGGATCTC 60.666 60.000 34.43 27.84 0.00 2.75
290 291 2.048690 GAGGATGCGCGGATCTCC 60.049 66.667 34.43 24.01 0.00 3.71
291 292 2.522923 AGGATGCGCGGATCTCCT 60.523 61.111 34.43 25.79 33.23 3.69
292 293 2.048690 GGATGCGCGGATCTCCTC 60.049 66.667 34.43 17.92 0.00 3.71
293 294 2.429907 GATGCGCGGATCTCCTCG 60.430 66.667 30.32 4.29 46.15 4.63
294 295 3.905705 GATGCGCGGATCTCCTCGG 62.906 68.421 30.32 0.00 43.82 4.63
310 311 3.804193 GGCGGCGCCTTCAAGAAG 61.804 66.667 41.44 7.15 46.69 2.85
327 328 9.535878 CTTCAAGAAGGATATTAGTGTTACTCC 57.464 37.037 1.86 0.00 34.87 3.85
328 329 8.840200 TCAAGAAGGATATTAGTGTTACTCCT 57.160 34.615 0.00 0.00 34.64 3.69
329 330 9.931698 TCAAGAAGGATATTAGTGTTACTCCTA 57.068 33.333 0.00 0.00 32.89 2.94
341 342 7.052142 AGTGTTACTCCTAATATTTCCTCCG 57.948 40.000 0.00 0.00 0.00 4.63
342 343 6.610425 AGTGTTACTCCTAATATTTCCTCCGT 59.390 38.462 0.00 0.00 0.00 4.69
343 344 6.922407 GTGTTACTCCTAATATTTCCTCCGTC 59.078 42.308 0.00 0.00 0.00 4.79
344 345 6.041296 TGTTACTCCTAATATTTCCTCCGTCC 59.959 42.308 0.00 0.00 0.00 4.79
345 346 3.902467 ACTCCTAATATTTCCTCCGTCCC 59.098 47.826 0.00 0.00 0.00 4.46
346 347 3.901844 CTCCTAATATTTCCTCCGTCCCA 59.098 47.826 0.00 0.00 0.00 4.37
347 348 4.300345 TCCTAATATTTCCTCCGTCCCAA 58.700 43.478 0.00 0.00 0.00 4.12
348 349 4.722781 TCCTAATATTTCCTCCGTCCCAAA 59.277 41.667 0.00 0.00 0.00 3.28
349 350 5.192121 TCCTAATATTTCCTCCGTCCCAAAA 59.808 40.000 0.00 0.00 0.00 2.44
350 351 6.068670 CCTAATATTTCCTCCGTCCCAAAAT 58.931 40.000 0.00 0.00 0.00 1.82
351 352 7.072708 TCCTAATATTTCCTCCGTCCCAAAATA 59.927 37.037 0.00 0.00 0.00 1.40
352 353 7.722285 CCTAATATTTCCTCCGTCCCAAAATAA 59.278 37.037 0.00 0.00 0.00 1.40
353 354 7.582667 AATATTTCCTCCGTCCCAAAATAAG 57.417 36.000 0.00 0.00 0.00 1.73
354 355 2.413310 TCCTCCGTCCCAAAATAAGC 57.587 50.000 0.00 0.00 0.00 3.09
355 356 1.631388 TCCTCCGTCCCAAAATAAGCA 59.369 47.619 0.00 0.00 0.00 3.91
356 357 2.241176 TCCTCCGTCCCAAAATAAGCAT 59.759 45.455 0.00 0.00 0.00 3.79
357 358 2.618709 CCTCCGTCCCAAAATAAGCATC 59.381 50.000 0.00 0.00 0.00 3.91
358 359 3.545703 CTCCGTCCCAAAATAAGCATCT 58.454 45.455 0.00 0.00 0.00 2.90
359 360 3.541632 TCCGTCCCAAAATAAGCATCTC 58.458 45.455 0.00 0.00 0.00 2.75
360 361 3.054728 TCCGTCCCAAAATAAGCATCTCA 60.055 43.478 0.00 0.00 0.00 3.27
361 362 3.694072 CCGTCCCAAAATAAGCATCTCAA 59.306 43.478 0.00 0.00 0.00 3.02
362 363 4.438744 CCGTCCCAAAATAAGCATCTCAAC 60.439 45.833 0.00 0.00 0.00 3.18
363 364 4.396166 CGTCCCAAAATAAGCATCTCAACT 59.604 41.667 0.00 0.00 0.00 3.16
364 365 5.106157 CGTCCCAAAATAAGCATCTCAACTT 60.106 40.000 0.00 0.00 0.00 2.66
365 366 6.570378 CGTCCCAAAATAAGCATCTCAACTTT 60.570 38.462 0.00 0.00 0.00 2.66
366 367 7.361713 CGTCCCAAAATAAGCATCTCAACTTTA 60.362 37.037 0.00 0.00 0.00 1.85
367 368 8.470002 GTCCCAAAATAAGCATCTCAACTTTAT 58.530 33.333 0.00 0.00 0.00 1.40
368 369 8.686334 TCCCAAAATAAGCATCTCAACTTTATC 58.314 33.333 0.00 0.00 0.00 1.75
369 370 7.645340 CCCAAAATAAGCATCTCAACTTTATCG 59.355 37.037 0.00 0.00 0.00 2.92
370 371 8.397906 CCAAAATAAGCATCTCAACTTTATCGA 58.602 33.333 0.00 0.00 0.00 3.59
371 372 9.773328 CAAAATAAGCATCTCAACTTTATCGAA 57.227 29.630 0.00 0.00 0.00 3.71
392 393 2.368655 AAAAATTCATCCCGCTGTGC 57.631 45.000 0.00 0.00 0.00 4.57
393 394 0.532115 AAAATTCATCCCGCTGTGCC 59.468 50.000 0.00 0.00 0.00 5.01
394 395 0.323725 AAATTCATCCCGCTGTGCCT 60.324 50.000 0.00 0.00 0.00 4.75
395 396 1.033746 AATTCATCCCGCTGTGCCTG 61.034 55.000 0.00 0.00 0.00 4.85
396 397 2.202236 ATTCATCCCGCTGTGCCTGT 62.202 55.000 0.00 0.00 0.00 4.00
397 398 3.129502 CATCCCGCTGTGCCTGTG 61.130 66.667 0.00 0.00 0.00 3.66
398 399 4.415150 ATCCCGCTGTGCCTGTGG 62.415 66.667 5.16 5.16 33.67 4.17
402 403 4.935495 CGCTGTGCCTGTGGTGGT 62.935 66.667 0.00 0.00 0.00 4.16
403 404 2.519302 GCTGTGCCTGTGGTGGTT 60.519 61.111 0.00 0.00 0.00 3.67
404 405 2.127232 GCTGTGCCTGTGGTGGTTT 61.127 57.895 0.00 0.00 0.00 3.27
405 406 1.735360 CTGTGCCTGTGGTGGTTTG 59.265 57.895 0.00 0.00 0.00 2.93
406 407 1.000270 TGTGCCTGTGGTGGTTTGT 60.000 52.632 0.00 0.00 0.00 2.83
407 408 1.318886 TGTGCCTGTGGTGGTTTGTG 61.319 55.000 0.00 0.00 0.00 3.33
408 409 1.000270 TGCCTGTGGTGGTTTGTGT 60.000 52.632 0.00 0.00 0.00 3.72
409 410 1.034838 TGCCTGTGGTGGTTTGTGTC 61.035 55.000 0.00 0.00 0.00 3.67
410 411 0.751643 GCCTGTGGTGGTTTGTGTCT 60.752 55.000 0.00 0.00 0.00 3.41
411 412 1.308998 CCTGTGGTGGTTTGTGTCTC 58.691 55.000 0.00 0.00 0.00 3.36
412 413 1.408127 CCTGTGGTGGTTTGTGTCTCA 60.408 52.381 0.00 0.00 0.00 3.27
413 414 2.364632 CTGTGGTGGTTTGTGTCTCAA 58.635 47.619 0.00 0.00 0.00 3.02
414 415 2.088423 TGTGGTGGTTTGTGTCTCAAC 58.912 47.619 0.00 0.00 35.61 3.18
415 416 2.290641 TGTGGTGGTTTGTGTCTCAACT 60.291 45.455 0.00 0.00 35.61 3.16
416 417 2.752903 GTGGTGGTTTGTGTCTCAACTT 59.247 45.455 0.00 0.00 35.61 2.66
417 418 3.192633 GTGGTGGTTTGTGTCTCAACTTT 59.807 43.478 0.00 0.00 35.61 2.66
418 419 4.396790 GTGGTGGTTTGTGTCTCAACTTTA 59.603 41.667 0.00 0.00 35.61 1.85
419 420 5.010933 TGGTGGTTTGTGTCTCAACTTTAA 58.989 37.500 0.00 0.00 35.61 1.52
420 421 5.654650 TGGTGGTTTGTGTCTCAACTTTAAT 59.345 36.000 0.00 0.00 35.61 1.40
421 422 6.829298 TGGTGGTTTGTGTCTCAACTTTAATA 59.171 34.615 0.00 0.00 35.61 0.98
422 423 7.504238 TGGTGGTTTGTGTCTCAACTTTAATAT 59.496 33.333 0.00 0.00 35.61 1.28
423 424 9.005777 GGTGGTTTGTGTCTCAACTTTAATATA 57.994 33.333 0.00 0.00 35.61 0.86
470 471 8.964476 AAAGTTGAGACACTTATCTTGAGAAA 57.036 30.769 0.00 0.00 35.87 2.52
471 472 8.964476 AAGTTGAGACACTTATCTTGAGAAAA 57.036 30.769 0.00 0.00 35.10 2.29
472 473 8.600449 AGTTGAGACACTTATCTTGAGAAAAG 57.400 34.615 0.00 0.00 0.00 2.27
473 474 7.659390 AGTTGAGACACTTATCTTGAGAAAAGG 59.341 37.037 0.00 0.00 0.00 3.11
474 475 6.467677 TGAGACACTTATCTTGAGAAAAGGG 58.532 40.000 0.00 0.00 0.00 3.95
475 476 6.270000 TGAGACACTTATCTTGAGAAAAGGGA 59.730 38.462 0.00 0.00 0.00 4.20
476 477 6.706295 AGACACTTATCTTGAGAAAAGGGAG 58.294 40.000 0.00 0.00 0.00 4.30
492 493 1.140252 GGGAGTATTTTAGGGCTCGCA 59.860 52.381 0.00 0.00 39.64 5.10
517 518 0.803117 TACTTCTCACCGCGTCTCAG 59.197 55.000 4.92 0.00 0.00 3.35
532 533 1.965754 CTCAGGGGGCGAGAAGAAGG 61.966 65.000 0.00 0.00 31.84 3.46
535 536 2.736826 GGGGGCGAGAAGAAGGAGG 61.737 68.421 0.00 0.00 0.00 4.30
558 560 0.954452 AACTTTCAAAGCAGCCCTCG 59.046 50.000 0.00 0.00 0.00 4.63
669 675 3.065510 GCGCTCCCTTTCTCCTTTAAATC 59.934 47.826 0.00 0.00 0.00 2.17
672 678 5.257262 GCTCCCTTTCTCCTTTAAATCTGT 58.743 41.667 0.00 0.00 0.00 3.41
678 684 7.337184 CCCTTTCTCCTTTAAATCTGTACCTTC 59.663 40.741 0.00 0.00 0.00 3.46
679 685 7.337184 CCTTTCTCCTTTAAATCTGTACCTTCC 59.663 40.741 0.00 0.00 0.00 3.46
680 686 6.309389 TCTCCTTTAAATCTGTACCTTCCC 57.691 41.667 0.00 0.00 0.00 3.97
681 687 5.788533 TCTCCTTTAAATCTGTACCTTCCCA 59.211 40.000 0.00 0.00 0.00 4.37
682 688 6.273730 TCTCCTTTAAATCTGTACCTTCCCAA 59.726 38.462 0.00 0.00 0.00 4.12
683 689 7.036863 TCTCCTTTAAATCTGTACCTTCCCAAT 60.037 37.037 0.00 0.00 0.00 3.16
686 696 7.396055 CCTTTAAATCTGTACCTTCCCAATTCA 59.604 37.037 0.00 0.00 0.00 2.57
739 752 3.734735 ACTCTTCGTTGCTTTCGTAACTC 59.265 43.478 0.00 0.00 34.12 3.01
751 764 4.931661 TTCGTAACTCTGGTTCACTCTT 57.068 40.909 0.00 0.00 36.92 2.85
873 890 3.659092 CTCGCGCCAAAAGCCACA 61.659 61.111 0.00 0.00 38.78 4.17
935 954 1.482553 GCTCCATAGCTACTACCCCCA 60.483 57.143 0.00 0.00 45.85 4.96
940 959 2.348411 TAGCTACTACCCCCACGTAC 57.652 55.000 0.00 0.00 0.00 3.67
972 993 0.611062 TCGATCCAGTCCCGTTGTCT 60.611 55.000 0.00 0.00 0.00 3.41
981 1002 2.000447 GTCCCGTTGTCTGTTGATAGC 59.000 52.381 0.00 0.00 0.00 2.97
996 1017 3.642705 TGATAGCTTTCCACATCGATCG 58.357 45.455 9.36 9.36 0.00 3.69
1323 1347 4.827087 CCGCTCGAGCTGCCATGT 62.827 66.667 32.88 0.00 39.32 3.21
1347 1371 2.797156 CGTCGATGATTTCATGGAGGTC 59.203 50.000 13.70 1.36 40.81 3.85
1368 1392 3.092511 TGGGAGATGGAGCAGGGC 61.093 66.667 0.00 0.00 0.00 5.19
1516 1546 0.886043 ATGCACGTGCTTGCTCTTCA 60.886 50.000 37.59 17.38 43.41 3.02
1546 1576 1.513586 CTAAGTCGTCGACCGTGGC 60.514 63.158 21.40 0.00 37.94 5.01
1558 1588 0.106918 ACCGTGGCAAGAAACCTTCA 60.107 50.000 0.76 0.00 0.00 3.02
1559 1589 1.028905 CCGTGGCAAGAAACCTTCAA 58.971 50.000 0.76 0.00 0.00 2.69
1567 1597 2.256117 AGAAACCTTCAACGGTCCAG 57.744 50.000 0.00 0.00 35.89 3.86
1568 1598 1.489230 AGAAACCTTCAACGGTCCAGT 59.511 47.619 0.00 0.00 35.89 4.00
1570 1600 0.818040 AACCTTCAACGGTCCAGTGC 60.818 55.000 0.00 0.00 35.89 4.40
1584 1614 4.154918 GGTCCAGTGCTGTAATCTTCTTTG 59.845 45.833 0.00 0.00 0.00 2.77
1602 1632 8.462016 TCTTCTTTGTCTTCCTCTTTTTCTTTG 58.538 33.333 0.00 0.00 0.00 2.77
1605 1635 3.243068 TGTCTTCCTCTTTTTCTTTGCGC 60.243 43.478 0.00 0.00 0.00 6.09
1611 1641 2.215196 TCTTTTTCTTTGCGCGTAGGT 58.785 42.857 8.43 0.00 0.00 3.08
1612 1642 2.614983 TCTTTTTCTTTGCGCGTAGGTT 59.385 40.909 8.43 0.00 0.00 3.50
1613 1643 2.392933 TTTTCTTTGCGCGTAGGTTG 57.607 45.000 8.43 0.00 0.00 3.77
1614 1644 1.301423 TTTCTTTGCGCGTAGGTTGT 58.699 45.000 8.43 0.00 0.00 3.32
1615 1645 1.301423 TTCTTTGCGCGTAGGTTGTT 58.699 45.000 8.43 0.00 0.00 2.83
1616 1646 0.584396 TCTTTGCGCGTAGGTTGTTG 59.416 50.000 8.43 0.00 0.00 3.33
1617 1647 0.306533 CTTTGCGCGTAGGTTGTTGT 59.693 50.000 8.43 0.00 0.00 3.32
1618 1648 0.305313 TTTGCGCGTAGGTTGTTGTC 59.695 50.000 8.43 0.00 0.00 3.18
1644 1674 5.411053 TGTTGATGTCGAATGCATGTAGAAA 59.589 36.000 0.00 0.00 0.00 2.52
1676 1706 1.659622 CGCCTGCTTGATGGATTGCA 61.660 55.000 0.00 0.00 0.00 4.08
1692 1722 1.604604 TGCAAGCTTAGGGTGTTGAC 58.395 50.000 0.00 0.00 0.00 3.18
1704 1742 3.135994 GGGTGTTGACGTGATAAGTTGT 58.864 45.455 0.00 0.00 0.00 3.32
1756 1796 0.163788 CGCGTGTTCTCCATGTGAAC 59.836 55.000 16.96 16.96 42.11 3.18
1865 1911 1.516386 CACTCCGGAACCGTGATCG 60.516 63.158 15.41 0.00 37.81 3.69
1868 1914 0.525668 CTCCGGAACCGTGATCGAAG 60.526 60.000 5.23 0.00 39.71 3.79
1875 1921 3.123116 GGAACCGTGATCGAAGTCTTTTC 59.877 47.826 0.00 0.00 39.71 2.29
1877 1923 2.000447 CCGTGATCGAAGTCTTTTCCC 59.000 52.381 0.00 0.00 39.71 3.97
1900 1946 1.926510 GCAACTGTTTTGTGAACCTGC 59.073 47.619 0.00 0.00 0.00 4.85
1926 1972 1.035923 CTAAGGATGCTCAGAGCGGA 58.964 55.000 17.81 0.99 46.26 5.54
1928 1974 0.615331 AAGGATGCTCAGAGCGGAAA 59.385 50.000 17.81 0.00 46.26 3.13
1938 1984 5.064707 TGCTCAGAGCGGAAATAACATAAAC 59.935 40.000 17.81 0.00 46.26 2.01
1945 1991 9.174166 AGAGCGGAAATAACATAAACAATAACT 57.826 29.630 0.00 0.00 0.00 2.24
1963 2009 8.739039 ACAATAACTTGCATGTCTTATAAGCAA 58.261 29.630 7.67 8.05 42.27 3.91
2033 2080 9.625747 ACATAACATGTTACCATCACATAATGA 57.374 29.630 20.26 0.00 41.63 2.57
2148 2206 1.812571 CCATTCTCCAAGTCCAAACGG 59.187 52.381 0.00 0.00 0.00 4.44
2188 2246 1.577328 CGCCCACAACCAGCACTAAG 61.577 60.000 0.00 0.00 0.00 2.18
2193 2251 3.243401 CCCACAACCAGCACTAAGAAAAC 60.243 47.826 0.00 0.00 0.00 2.43
2194 2252 3.243401 CCACAACCAGCACTAAGAAAACC 60.243 47.826 0.00 0.00 0.00 3.27
2195 2253 3.380004 CACAACCAGCACTAAGAAAACCA 59.620 43.478 0.00 0.00 0.00 3.67
2196 2254 4.037923 CACAACCAGCACTAAGAAAACCAT 59.962 41.667 0.00 0.00 0.00 3.55
2197 2255 4.649218 ACAACCAGCACTAAGAAAACCATT 59.351 37.500 0.00 0.00 0.00 3.16
2198 2256 5.221244 ACAACCAGCACTAAGAAAACCATTC 60.221 40.000 0.00 0.00 0.00 2.67
2200 2258 5.876357 ACCAGCACTAAGAAAACCATTCTA 58.124 37.500 0.00 0.00 0.00 2.10
2201 2259 5.940470 ACCAGCACTAAGAAAACCATTCTAG 59.060 40.000 0.00 0.00 0.00 2.43
2202 2260 6.173339 CCAGCACTAAGAAAACCATTCTAGA 58.827 40.000 0.00 0.00 0.00 2.43
2204 2262 6.650807 CAGCACTAAGAAAACCATTCTAGACA 59.349 38.462 0.00 0.00 0.00 3.41
2206 2264 7.173390 AGCACTAAGAAAACCATTCTAGACAAC 59.827 37.037 0.00 0.00 0.00 3.32
2207 2265 7.173390 GCACTAAGAAAACCATTCTAGACAACT 59.827 37.037 0.00 0.00 0.00 3.16
2208 2266 8.713271 CACTAAGAAAACCATTCTAGACAACTC 58.287 37.037 0.00 0.00 0.00 3.01
2209 2267 8.429641 ACTAAGAAAACCATTCTAGACAACTCA 58.570 33.333 0.00 0.00 0.00 3.41
2210 2268 9.273016 CTAAGAAAACCATTCTAGACAACTCAA 57.727 33.333 0.00 0.00 0.00 3.02
2211 2269 8.519799 AAGAAAACCATTCTAGACAACTCAAA 57.480 30.769 0.00 0.00 0.00 2.69
2212 2270 8.159344 AGAAAACCATTCTAGACAACTCAAAG 57.841 34.615 0.00 0.00 0.00 2.77
2213 2271 5.948992 AACCATTCTAGACAACTCAAAGC 57.051 39.130 0.00 0.00 0.00 3.51
2214 2272 4.973168 ACCATTCTAGACAACTCAAAGCA 58.027 39.130 0.00 0.00 0.00 3.91
2215 2273 5.376625 ACCATTCTAGACAACTCAAAGCAA 58.623 37.500 0.00 0.00 0.00 3.91
2216 2274 5.239525 ACCATTCTAGACAACTCAAAGCAAC 59.760 40.000 0.00 0.00 0.00 4.17
2217 2275 5.377358 CATTCTAGACAACTCAAAGCAACG 58.623 41.667 0.00 0.00 0.00 4.10
2218 2276 2.800544 TCTAGACAACTCAAAGCAACGC 59.199 45.455 0.00 0.00 0.00 4.84
2219 2277 0.663153 AGACAACTCAAAGCAACGCC 59.337 50.000 0.00 0.00 0.00 5.68
2220 2278 0.380378 GACAACTCAAAGCAACGCCA 59.620 50.000 0.00 0.00 0.00 5.69
2221 2279 0.814457 ACAACTCAAAGCAACGCCAA 59.186 45.000 0.00 0.00 0.00 4.52
2222 2280 1.202290 ACAACTCAAAGCAACGCCAAG 60.202 47.619 0.00 0.00 0.00 3.61
2223 2281 0.385390 AACTCAAAGCAACGCCAAGG 59.615 50.000 0.00 0.00 0.00 3.61
2224 2282 1.372128 CTCAAAGCAACGCCAAGGC 60.372 57.895 0.00 0.00 37.85 4.35
2225 2283 1.799258 CTCAAAGCAACGCCAAGGCT 61.799 55.000 9.73 0.00 40.14 4.58
2226 2284 0.536233 TCAAAGCAACGCCAAGGCTA 60.536 50.000 9.73 0.00 36.76 3.93
2227 2285 0.313672 CAAAGCAACGCCAAGGCTAA 59.686 50.000 9.73 0.00 36.76 3.09
2228 2286 1.067635 CAAAGCAACGCCAAGGCTAAT 60.068 47.619 9.73 0.00 36.76 1.73
2229 2287 0.811281 AAGCAACGCCAAGGCTAATC 59.189 50.000 9.73 0.00 36.76 1.75
2230 2288 0.035056 AGCAACGCCAAGGCTAATCT 60.035 50.000 9.73 0.00 39.32 2.40
2231 2289 1.209504 AGCAACGCCAAGGCTAATCTA 59.790 47.619 9.73 0.00 39.32 1.98
2232 2290 1.599542 GCAACGCCAAGGCTAATCTAG 59.400 52.381 9.73 0.00 39.32 2.43
2233 2291 2.741878 GCAACGCCAAGGCTAATCTAGA 60.742 50.000 9.73 0.00 39.32 2.43
2234 2292 2.866762 CAACGCCAAGGCTAATCTAGAC 59.133 50.000 9.73 0.00 39.32 2.59
2235 2293 1.067212 ACGCCAAGGCTAATCTAGACG 59.933 52.381 9.73 0.00 39.39 4.18
2236 2294 1.503294 GCCAAGGCTAATCTAGACGC 58.497 55.000 3.29 0.00 39.39 5.19
2237 2295 1.874320 GCCAAGGCTAATCTAGACGCC 60.874 57.143 17.50 17.50 39.39 5.68
2238 2296 1.412710 CCAAGGCTAATCTAGACGCCA 59.587 52.381 23.73 0.00 44.85 5.69
2239 2297 2.037772 CCAAGGCTAATCTAGACGCCAT 59.962 50.000 23.73 14.09 44.85 4.40
2240 2298 3.495100 CCAAGGCTAATCTAGACGCCATT 60.495 47.826 23.73 15.19 44.85 3.16
2241 2299 4.130118 CAAGGCTAATCTAGACGCCATTT 58.870 43.478 23.73 12.49 44.85 2.32
2242 2300 5.297547 CAAGGCTAATCTAGACGCCATTTA 58.702 41.667 23.73 6.67 44.85 1.40
2243 2301 5.140747 AGGCTAATCTAGACGCCATTTAG 57.859 43.478 23.73 14.87 44.85 1.85
2244 2302 4.833380 AGGCTAATCTAGACGCCATTTAGA 59.167 41.667 23.73 0.00 44.85 2.10
2245 2303 5.304614 AGGCTAATCTAGACGCCATTTAGAA 59.695 40.000 23.73 0.00 44.85 2.10
2246 2304 5.989777 GGCTAATCTAGACGCCATTTAGAAA 59.010 40.000 19.35 0.00 42.06 2.52
2247 2305 6.482308 GGCTAATCTAGACGCCATTTAGAAAA 59.518 38.462 19.35 0.00 42.06 2.29
2248 2306 7.012044 GGCTAATCTAGACGCCATTTAGAAAAA 59.988 37.037 19.35 0.00 42.06 1.94
2249 2307 8.064814 GCTAATCTAGACGCCATTTAGAAAAAG 58.935 37.037 11.15 0.00 0.00 2.27
2250 2308 6.927294 ATCTAGACGCCATTTAGAAAAAGG 57.073 37.500 0.00 0.00 0.00 3.11
2251 2309 3.850122 AGACGCCATTTAGAAAAAGGC 57.150 42.857 8.25 8.25 36.42 4.35
2252 2310 3.421844 AGACGCCATTTAGAAAAAGGCT 58.578 40.909 14.52 4.42 37.04 4.58
2253 2311 4.585879 AGACGCCATTTAGAAAAAGGCTA 58.414 39.130 14.52 0.00 37.04 3.93
2254 2312 5.007682 AGACGCCATTTAGAAAAAGGCTAA 58.992 37.500 14.52 0.00 37.04 3.09
2255 2313 5.652452 AGACGCCATTTAGAAAAAGGCTAAT 59.348 36.000 14.52 2.97 37.04 1.73
2256 2314 5.891451 ACGCCATTTAGAAAAAGGCTAATC 58.109 37.500 14.52 0.00 37.04 1.75
2257 2315 5.652452 ACGCCATTTAGAAAAAGGCTAATCT 59.348 36.000 14.52 0.00 37.04 2.40
2258 2316 6.826741 ACGCCATTTAGAAAAAGGCTAATCTA 59.173 34.615 14.52 0.00 37.04 1.98
2259 2317 7.338449 ACGCCATTTAGAAAAAGGCTAATCTAA 59.662 33.333 14.52 10.69 37.04 2.10
2260 2318 8.188139 CGCCATTTAGAAAAAGGCTAATCTAAA 58.812 33.333 21.44 21.44 44.14 1.85
2261 2319 9.302345 GCCATTTAGAAAAAGGCTAATCTAAAC 57.698 33.333 21.54 11.98 43.34 2.01
2262 2320 9.503427 CCATTTAGAAAAAGGCTAATCTAAACG 57.497 33.333 21.54 16.86 43.34 3.60
2263 2321 9.010366 CATTTAGAAAAAGGCTAATCTAAACGC 57.990 33.333 21.54 0.00 43.34 4.84
2264 2322 7.675962 TTAGAAAAAGGCTAATCTAAACGCA 57.324 32.000 11.79 0.00 32.90 5.24
2265 2323 6.569179 AGAAAAAGGCTAATCTAAACGCAA 57.431 33.333 0.00 0.00 0.00 4.85
2266 2324 8.234546 TTAGAAAAAGGCTAATCTAAACGCAAG 58.765 33.333 11.79 0.00 32.90 4.01
2283 2341 5.704217 CGCAAGTTGAATACTTCTCCTAC 57.296 43.478 7.16 0.00 45.29 3.18
2284 2342 5.168569 CGCAAGTTGAATACTTCTCCTACA 58.831 41.667 7.16 0.00 45.29 2.74
2285 2343 5.062308 CGCAAGTTGAATACTTCTCCTACAC 59.938 44.000 7.16 0.00 45.29 2.90
2286 2344 5.932303 GCAAGTTGAATACTTCTCCTACACA 59.068 40.000 7.16 0.00 45.29 3.72
2287 2345 6.595716 GCAAGTTGAATACTTCTCCTACACAT 59.404 38.462 7.16 0.00 45.29 3.21
2288 2346 7.201565 GCAAGTTGAATACTTCTCCTACACATC 60.202 40.741 7.16 0.00 45.29 3.06
2289 2347 7.726033 AGTTGAATACTTCTCCTACACATCT 57.274 36.000 0.00 0.00 31.29 2.90
2290 2348 8.824756 AGTTGAATACTTCTCCTACACATCTA 57.175 34.615 0.00 0.00 31.29 1.98
2291 2349 8.908903 AGTTGAATACTTCTCCTACACATCTAG 58.091 37.037 0.00 0.00 31.29 2.43
2292 2350 8.904834 GTTGAATACTTCTCCTACACATCTAGA 58.095 37.037 0.00 0.00 0.00 2.43
2293 2351 9.647918 TTGAATACTTCTCCTACACATCTAGAT 57.352 33.333 0.00 0.00 0.00 1.98
2297 2355 7.826918 ACTTCTCCTACACATCTAGATAACC 57.173 40.000 4.54 0.00 0.00 2.85
2298 2356 7.355101 ACTTCTCCTACACATCTAGATAACCA 58.645 38.462 4.54 0.00 0.00 3.67
2299 2357 7.285858 ACTTCTCCTACACATCTAGATAACCAC 59.714 40.741 4.54 0.00 0.00 4.16
2300 2358 6.069331 TCTCCTACACATCTAGATAACCACC 58.931 44.000 4.54 0.00 0.00 4.61
2301 2359 5.145564 TCCTACACATCTAGATAACCACCC 58.854 45.833 4.54 0.00 0.00 4.61
2302 2360 4.283722 CCTACACATCTAGATAACCACCCC 59.716 50.000 4.54 0.00 0.00 4.95
2303 2361 4.008916 ACACATCTAGATAACCACCCCT 57.991 45.455 4.54 0.00 0.00 4.79
2304 2362 3.967987 ACACATCTAGATAACCACCCCTC 59.032 47.826 4.54 0.00 0.00 4.30
2305 2363 3.005897 CACATCTAGATAACCACCCCTCG 59.994 52.174 4.54 0.00 0.00 4.63
2306 2364 3.231818 CATCTAGATAACCACCCCTCGT 58.768 50.000 4.54 0.00 0.00 4.18
2307 2365 2.662866 TCTAGATAACCACCCCTCGTG 58.337 52.381 0.00 0.00 42.62 4.35
2314 2372 2.669569 CACCCCTCGTGGCAACTG 60.670 66.667 0.00 0.00 38.96 3.16
2315 2373 2.847234 ACCCCTCGTGGCAACTGA 60.847 61.111 0.00 0.00 37.61 3.41
2316 2374 2.046892 CCCCTCGTGGCAACTGAG 60.047 66.667 0.00 6.22 38.85 3.35
2317 2375 2.743928 CCCTCGTGGCAACTGAGC 60.744 66.667 7.36 0.00 38.12 4.26
2324 2382 2.032681 GGCAACTGAGCCGAGGTT 59.967 61.111 0.00 0.00 46.12 3.50
2325 2383 2.035442 GGCAACTGAGCCGAGGTTC 61.035 63.158 0.00 0.00 46.12 3.62
2326 2384 2.383527 GCAACTGAGCCGAGGTTCG 61.384 63.158 1.67 0.06 40.07 3.95
2327 2385 1.006102 CAACTGAGCCGAGGTTCGT 60.006 57.895 1.67 0.62 38.40 3.85
2328 2386 1.009389 CAACTGAGCCGAGGTTCGTC 61.009 60.000 1.67 0.00 38.40 4.20
2329 2387 1.461091 AACTGAGCCGAGGTTCGTCA 61.461 55.000 1.67 0.00 38.40 4.35
2330 2388 1.153939 CTGAGCCGAGGTTCGTCAG 60.154 63.158 1.67 5.19 36.91 3.51
2331 2389 2.182030 GAGCCGAGGTTCGTCAGG 59.818 66.667 0.00 0.00 38.40 3.86
2333 2391 4.070552 GCCGAGGTTCGTCAGGCT 62.071 66.667 15.26 0.00 44.06 4.58
2334 2392 2.182030 CCGAGGTTCGTCAGGCTC 59.818 66.667 0.00 0.00 38.40 4.70
2335 2393 2.636412 CCGAGGTTCGTCAGGCTCA 61.636 63.158 0.00 0.00 38.40 4.26
2336 2394 1.153939 CGAGGTTCGTCAGGCTCAG 60.154 63.158 0.00 0.00 34.72 3.35
2337 2395 1.587043 CGAGGTTCGTCAGGCTCAGA 61.587 60.000 0.00 0.00 34.72 3.27
2338 2396 0.820871 GAGGTTCGTCAGGCTCAGAT 59.179 55.000 0.00 0.00 0.00 2.90
2339 2397 1.205893 GAGGTTCGTCAGGCTCAGATT 59.794 52.381 0.00 0.00 0.00 2.40
2340 2398 1.625818 AGGTTCGTCAGGCTCAGATTT 59.374 47.619 0.00 0.00 0.00 2.17
2341 2399 2.039084 AGGTTCGTCAGGCTCAGATTTT 59.961 45.455 0.00 0.00 0.00 1.82
2342 2400 2.814336 GGTTCGTCAGGCTCAGATTTTT 59.186 45.455 0.00 0.00 0.00 1.94
2343 2401 3.120165 GGTTCGTCAGGCTCAGATTTTTC 60.120 47.826 0.00 0.00 0.00 2.29
2344 2402 3.685139 TCGTCAGGCTCAGATTTTTCT 57.315 42.857 0.00 0.00 0.00 2.52
2345 2403 3.329386 TCGTCAGGCTCAGATTTTTCTG 58.671 45.455 0.00 0.00 39.00 3.02
2346 2404 3.006859 TCGTCAGGCTCAGATTTTTCTGA 59.993 43.478 5.63 5.63 43.68 3.27
2347 2405 3.124297 CGTCAGGCTCAGATTTTTCTGAC 59.876 47.826 10.23 10.23 44.25 3.51
2348 2406 3.438434 GTCAGGCTCAGATTTTTCTGACC 59.562 47.826 9.37 8.45 42.84 4.02
2349 2407 3.328931 TCAGGCTCAGATTTTTCTGACCT 59.671 43.478 15.39 15.39 42.91 3.85
2350 2408 3.439476 CAGGCTCAGATTTTTCTGACCTG 59.561 47.826 24.02 24.02 46.41 4.00
2351 2409 2.163211 GGCTCAGATTTTTCTGACCTGC 59.837 50.000 1.65 4.76 41.34 4.85
2352 2410 2.163211 GCTCAGATTTTTCTGACCTGCC 59.837 50.000 1.65 0.00 41.34 4.85
2353 2411 3.415212 CTCAGATTTTTCTGACCTGCCA 58.585 45.455 1.65 0.00 41.34 4.92
2354 2412 3.149196 TCAGATTTTTCTGACCTGCCAC 58.851 45.455 1.65 0.00 41.34 5.01
2355 2413 3.152341 CAGATTTTTCTGACCTGCCACT 58.848 45.455 0.00 0.00 39.99 4.00
2356 2414 3.571401 CAGATTTTTCTGACCTGCCACTT 59.429 43.478 0.00 0.00 39.99 3.16
2357 2415 3.571401 AGATTTTTCTGACCTGCCACTTG 59.429 43.478 0.00 0.00 0.00 3.16
2370 2573 1.745653 GCCACTTGCAGTCCTAATTCC 59.254 52.381 0.00 0.00 40.77 3.01
2372 2575 2.290896 CCACTTGCAGTCCTAATTCCCA 60.291 50.000 0.00 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.080093 TCGACCGTCTGGCATGTTC 60.080 57.895 0.00 0.00 39.70 3.18
1 2 1.374252 GTCGACCGTCTGGCATGTT 60.374 57.895 3.51 0.00 39.70 2.71
2 3 2.261671 GTCGACCGTCTGGCATGT 59.738 61.111 3.51 0.00 39.70 3.21
3 4 2.880879 CGTCGACCGTCTGGCATG 60.881 66.667 10.58 0.00 39.70 4.06
4 5 3.060000 TCGTCGACCGTCTGGCAT 61.060 61.111 10.58 0.00 39.70 4.40
5 6 4.034258 GTCGTCGACCGTCTGGCA 62.034 66.667 14.60 0.00 39.70 4.92
7 8 2.829577 CTTCGTCGTCGACCGTCTGG 62.830 65.000 19.29 4.69 46.03 3.86
8 9 1.509370 CTTCGTCGTCGACCGTCTG 60.509 63.158 19.29 5.40 46.03 3.51
9 10 2.675056 CCTTCGTCGTCGACCGTCT 61.675 63.158 19.29 0.00 46.03 4.18
10 11 2.202272 CCTTCGTCGTCGACCGTC 60.202 66.667 19.29 2.53 46.03 4.79
11 12 4.395583 GCCTTCGTCGTCGACCGT 62.396 66.667 19.29 0.00 46.03 4.83
12 13 3.884581 TTGCCTTCGTCGTCGACCG 62.885 63.158 19.29 14.03 46.03 4.79
13 14 2.049802 TTGCCTTCGTCGTCGACC 60.050 61.111 19.29 5.77 46.03 4.79
14 15 2.717809 GCTTGCCTTCGTCGTCGAC 61.718 63.158 15.51 15.51 46.03 4.20
15 16 2.430244 GCTTGCCTTCGTCGTCGA 60.430 61.111 0.00 0.00 44.66 4.20
16 17 3.479269 GGCTTGCCTTCGTCGTCG 61.479 66.667 4.11 0.00 38.55 5.12
17 18 1.741770 ATGGCTTGCCTTCGTCGTC 60.742 57.895 13.18 0.00 0.00 4.20
18 19 2.034879 CATGGCTTGCCTTCGTCGT 61.035 57.895 13.18 0.00 0.00 4.34
19 20 1.741401 TCATGGCTTGCCTTCGTCG 60.741 57.895 13.18 0.00 0.00 5.12
20 21 1.648467 GGTCATGGCTTGCCTTCGTC 61.648 60.000 13.18 0.00 0.00 4.20
21 22 1.675641 GGTCATGGCTTGCCTTCGT 60.676 57.895 13.18 0.00 0.00 3.85
22 23 2.409870 GGGTCATGGCTTGCCTTCG 61.410 63.158 13.18 1.62 0.00 3.79
23 24 1.000396 AGGGTCATGGCTTGCCTTC 60.000 57.895 13.18 1.17 0.00 3.46
24 25 1.304713 CAGGGTCATGGCTTGCCTT 60.305 57.895 13.18 3.61 0.00 4.35
25 26 2.357836 CAGGGTCATGGCTTGCCT 59.642 61.111 13.18 0.00 0.00 4.75
26 27 3.455469 GCAGGGTCATGGCTTGCC 61.455 66.667 13.93 4.43 0.00 4.52
27 28 2.362120 AGCAGGGTCATGGCTTGC 60.362 61.111 16.21 16.21 33.21 4.01
28 29 0.395311 ATGAGCAGGGTCATGGCTTG 60.395 55.000 12.73 0.00 38.15 4.01
29 30 0.106819 GATGAGCAGGGTCATGGCTT 60.107 55.000 17.74 0.00 37.29 4.35
30 31 0.987081 AGATGAGCAGGGTCATGGCT 60.987 55.000 17.74 7.61 37.29 4.75
31 32 0.106819 AAGATGAGCAGGGTCATGGC 60.107 55.000 17.74 5.54 37.29 4.40
32 33 1.676746 CAAGATGAGCAGGGTCATGG 58.323 55.000 17.74 4.73 37.29 3.66
33 34 1.022735 GCAAGATGAGCAGGGTCATG 58.977 55.000 17.74 7.34 37.29 3.07
34 35 0.622136 TGCAAGATGAGCAGGGTCAT 59.378 50.000 13.31 13.31 40.00 3.06
35 36 0.401356 TTGCAAGATGAGCAGGGTCA 59.599 50.000 3.41 3.41 43.75 4.02
36 37 0.807496 GTTGCAAGATGAGCAGGGTC 59.193 55.000 0.00 0.00 43.75 4.46
37 38 0.610232 GGTTGCAAGATGAGCAGGGT 60.610 55.000 0.00 0.00 43.75 4.34
38 39 0.609957 TGGTTGCAAGATGAGCAGGG 60.610 55.000 0.00 0.00 43.75 4.45
39 40 1.404391 GATGGTTGCAAGATGAGCAGG 59.596 52.381 0.00 0.00 43.75 4.85
40 41 2.089201 TGATGGTTGCAAGATGAGCAG 58.911 47.619 0.00 0.00 43.75 4.24
41 42 2.203470 TGATGGTTGCAAGATGAGCA 57.797 45.000 0.00 0.00 40.85 4.26
42 43 2.286831 CGATGATGGTTGCAAGATGAGC 60.287 50.000 0.00 0.00 0.00 4.26
43 44 2.941064 ACGATGATGGTTGCAAGATGAG 59.059 45.455 0.00 0.00 0.00 2.90
44 45 2.679336 CACGATGATGGTTGCAAGATGA 59.321 45.455 0.00 0.00 0.00 2.92
45 46 2.793585 GCACGATGATGGTTGCAAGATG 60.794 50.000 0.00 0.00 0.00 2.90
46 47 1.402968 GCACGATGATGGTTGCAAGAT 59.597 47.619 0.00 0.00 0.00 2.40
47 48 0.804364 GCACGATGATGGTTGCAAGA 59.196 50.000 0.00 0.00 0.00 3.02
48 49 0.179156 GGCACGATGATGGTTGCAAG 60.179 55.000 0.00 0.00 0.00 4.01
49 50 0.892814 TGGCACGATGATGGTTGCAA 60.893 50.000 0.00 0.00 0.00 4.08
50 51 1.303155 TGGCACGATGATGGTTGCA 60.303 52.632 0.00 0.00 0.00 4.08
51 52 1.137404 GTGGCACGATGATGGTTGC 59.863 57.895 0.00 0.00 0.00 4.17
52 53 0.168788 GTGTGGCACGATGATGGTTG 59.831 55.000 13.77 0.00 0.00 3.77
53 54 0.250684 TGTGTGGCACGATGATGGTT 60.251 50.000 13.77 0.00 37.14 3.67
54 55 0.250684 TTGTGTGGCACGATGATGGT 60.251 50.000 13.77 0.00 37.14 3.55
55 56 0.448990 CTTGTGTGGCACGATGATGG 59.551 55.000 13.77 0.00 37.14 3.51
56 57 1.129251 GACTTGTGTGGCACGATGATG 59.871 52.381 13.77 3.59 37.14 3.07
57 58 1.442769 GACTTGTGTGGCACGATGAT 58.557 50.000 13.77 0.00 37.14 2.45
58 59 0.943835 CGACTTGTGTGGCACGATGA 60.944 55.000 13.77 0.00 37.14 2.92
59 60 1.492873 CGACTTGTGTGGCACGATG 59.507 57.895 13.77 6.94 37.14 3.84
60 61 2.317609 GCGACTTGTGTGGCACGAT 61.318 57.895 13.77 0.00 45.36 3.73
61 62 2.964925 GCGACTTGTGTGGCACGA 60.965 61.111 13.77 0.00 45.36 4.35
65 66 2.052237 CGTTGCGACTTGTGTGGC 60.052 61.111 1.84 0.00 46.07 5.01
66 67 2.052237 GCGTTGCGACTTGTGTGG 60.052 61.111 1.84 0.00 0.00 4.17
67 68 2.052237 GGCGTTGCGACTTGTGTG 60.052 61.111 1.84 0.00 0.00 3.82
68 69 2.512745 TGGCGTTGCGACTTGTGT 60.513 55.556 1.84 0.00 35.04 3.72
69 70 2.052237 GTGGCGTTGCGACTTGTG 60.052 61.111 1.84 0.00 35.04 3.33
70 71 1.841663 GATGTGGCGTTGCGACTTGT 61.842 55.000 1.84 0.00 38.09 3.16
71 72 1.154413 GATGTGGCGTTGCGACTTG 60.154 57.895 1.84 0.00 38.09 3.16
72 73 2.325082 GGATGTGGCGTTGCGACTT 61.325 57.895 1.84 0.00 38.09 3.01
73 74 2.742372 GGATGTGGCGTTGCGACT 60.742 61.111 1.84 0.00 38.09 4.18
74 75 4.147322 CGGATGTGGCGTTGCGAC 62.147 66.667 0.00 0.00 37.76 5.19
77 78 4.759096 GTGCGGATGTGGCGTTGC 62.759 66.667 0.00 0.00 0.00 4.17
78 79 4.101790 GGTGCGGATGTGGCGTTG 62.102 66.667 0.00 0.00 0.00 4.10
105 106 4.760047 ATCGTGGTCGGCAGGTGC 62.760 66.667 0.00 0.00 41.14 5.01
106 107 2.815211 CATCGTGGTCGGCAGGTG 60.815 66.667 0.00 0.00 37.69 4.00
107 108 3.296709 GACATCGTGGTCGGCAGGT 62.297 63.158 0.00 0.00 37.69 4.00
108 109 2.509336 GACATCGTGGTCGGCAGG 60.509 66.667 0.00 0.00 37.69 4.85
119 120 2.430075 TGGACGTGCACGACATCG 60.430 61.111 42.94 18.44 43.02 3.84
120 121 2.730672 GCTGGACGTGCACGACATC 61.731 63.158 42.94 29.59 43.02 3.06
121 122 2.738521 GCTGGACGTGCACGACAT 60.739 61.111 42.94 23.47 43.02 3.06
122 123 4.961511 GGCTGGACGTGCACGACA 62.962 66.667 42.94 34.71 43.02 4.35
129 130 4.680237 TCCTTGCGGCTGGACGTG 62.680 66.667 10.37 0.00 35.98 4.49
130 131 3.883744 CTTCCTTGCGGCTGGACGT 62.884 63.158 13.24 0.00 35.98 4.34
131 132 3.121030 CTTCCTTGCGGCTGGACG 61.121 66.667 13.24 9.05 31.24 4.79
132 133 1.743252 CTCTTCCTTGCGGCTGGAC 60.743 63.158 13.24 0.00 31.24 4.02
133 134 2.665000 CTCTTCCTTGCGGCTGGA 59.335 61.111 10.37 10.37 0.00 3.86
134 135 3.130160 GCTCTTCCTTGCGGCTGG 61.130 66.667 0.00 3.82 0.00 4.85
135 136 2.359107 TGCTCTTCCTTGCGGCTG 60.359 61.111 0.00 0.00 0.00 4.85
136 137 2.046507 CTGCTCTTCCTTGCGGCT 60.047 61.111 0.00 0.00 0.00 5.52
137 138 3.130160 CCTGCTCTTCCTTGCGGC 61.130 66.667 0.00 0.00 34.48 6.53
138 139 1.449246 CTCCTGCTCTTCCTTGCGG 60.449 63.158 0.00 0.00 35.50 5.69
139 140 1.449246 CCTCCTGCTCTTCCTTGCG 60.449 63.158 0.00 0.00 0.00 4.85
140 141 1.077858 CCCTCCTGCTCTTCCTTGC 60.078 63.158 0.00 0.00 0.00 4.01
141 142 1.140652 GATCCCTCCTGCTCTTCCTTG 59.859 57.143 0.00 0.00 0.00 3.61
142 143 1.274069 TGATCCCTCCTGCTCTTCCTT 60.274 52.381 0.00 0.00 0.00 3.36
143 144 0.341258 TGATCCCTCCTGCTCTTCCT 59.659 55.000 0.00 0.00 0.00 3.36
144 145 0.467804 GTGATCCCTCCTGCTCTTCC 59.532 60.000 0.00 0.00 0.00 3.46
145 146 0.103937 CGTGATCCCTCCTGCTCTTC 59.896 60.000 0.00 0.00 0.00 2.87
146 147 1.333636 CCGTGATCCCTCCTGCTCTT 61.334 60.000 0.00 0.00 0.00 2.85
147 148 1.760086 CCGTGATCCCTCCTGCTCT 60.760 63.158 0.00 0.00 0.00 4.09
148 149 2.022240 GACCGTGATCCCTCCTGCTC 62.022 65.000 0.00 0.00 0.00 4.26
149 150 2.039624 ACCGTGATCCCTCCTGCT 59.960 61.111 0.00 0.00 0.00 4.24
150 151 1.617947 AAGACCGTGATCCCTCCTGC 61.618 60.000 0.00 0.00 0.00 4.85
151 152 0.461961 GAAGACCGTGATCCCTCCTG 59.538 60.000 0.00 0.00 0.00 3.86
152 153 0.041238 TGAAGACCGTGATCCCTCCT 59.959 55.000 0.00 0.00 0.00 3.69
153 154 0.902531 TTGAAGACCGTGATCCCTCC 59.097 55.000 0.00 0.00 0.00 4.30
154 155 1.825474 TCTTGAAGACCGTGATCCCTC 59.175 52.381 0.00 0.00 0.00 4.30
155 156 1.550976 GTCTTGAAGACCGTGATCCCT 59.449 52.381 14.23 0.00 39.28 4.20
156 157 1.736032 CGTCTTGAAGACCGTGATCCC 60.736 57.143 18.78 0.00 42.12 3.85
157 158 1.630148 CGTCTTGAAGACCGTGATCC 58.370 55.000 18.78 0.00 42.12 3.36
158 159 1.630148 CCGTCTTGAAGACCGTGATC 58.370 55.000 18.78 0.00 42.12 2.92
159 160 0.389948 GCCGTCTTGAAGACCGTGAT 60.390 55.000 18.78 0.00 42.12 3.06
160 161 1.006571 GCCGTCTTGAAGACCGTGA 60.007 57.895 18.78 0.00 42.12 4.35
161 162 2.372690 CGCCGTCTTGAAGACCGTG 61.373 63.158 18.78 14.92 42.12 4.94
162 163 2.049433 CGCCGTCTTGAAGACCGT 60.049 61.111 18.78 0.00 42.12 4.83
163 164 3.479269 GCGCCGTCTTGAAGACCG 61.479 66.667 18.78 17.35 42.12 4.79
164 165 3.119096 GGCGCCGTCTTGAAGACC 61.119 66.667 18.78 5.72 42.12 3.85
165 166 3.119096 GGGCGCCGTCTTGAAGAC 61.119 66.667 22.54 15.12 41.71 3.01
166 167 4.388499 GGGGCGCCGTCTTGAAGA 62.388 66.667 22.54 0.00 0.00 2.87
183 184 0.539051 AACATCGCTCTCCCTCTTGG 59.461 55.000 0.00 0.00 0.00 3.61
184 185 1.649664 CAACATCGCTCTCCCTCTTG 58.350 55.000 0.00 0.00 0.00 3.02
185 186 0.539051 CCAACATCGCTCTCCCTCTT 59.461 55.000 0.00 0.00 0.00 2.85
186 187 0.324738 TCCAACATCGCTCTCCCTCT 60.325 55.000 0.00 0.00 0.00 3.69
187 188 0.103937 CTCCAACATCGCTCTCCCTC 59.896 60.000 0.00 0.00 0.00 4.30
188 189 0.324738 TCTCCAACATCGCTCTCCCT 60.325 55.000 0.00 0.00 0.00 4.20
189 190 0.179097 GTCTCCAACATCGCTCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
190 191 0.526524 CGTCTCCAACATCGCTCTCC 60.527 60.000 0.00 0.00 0.00 3.71
191 192 0.452184 TCGTCTCCAACATCGCTCTC 59.548 55.000 0.00 0.00 0.00 3.20
192 193 0.171455 GTCGTCTCCAACATCGCTCT 59.829 55.000 0.00 0.00 0.00 4.09
193 194 1.134530 CGTCGTCTCCAACATCGCTC 61.135 60.000 0.00 0.00 0.00 5.03
194 195 1.154016 CGTCGTCTCCAACATCGCT 60.154 57.895 0.00 0.00 0.00 4.93
195 196 2.789203 GCGTCGTCTCCAACATCGC 61.789 63.158 0.00 0.00 40.44 4.58
196 197 1.154016 AGCGTCGTCTCCAACATCG 60.154 57.895 0.00 0.00 0.00 3.84
197 198 1.687494 GCAGCGTCGTCTCCAACATC 61.687 60.000 0.00 0.00 0.00 3.06
198 199 1.738099 GCAGCGTCGTCTCCAACAT 60.738 57.895 0.00 0.00 0.00 2.71
199 200 2.355837 GCAGCGTCGTCTCCAACA 60.356 61.111 0.00 0.00 0.00 3.33
200 201 3.112709 GGCAGCGTCGTCTCCAAC 61.113 66.667 0.00 0.00 0.00 3.77
201 202 4.717629 CGGCAGCGTCGTCTCCAA 62.718 66.667 0.00 0.00 0.00 3.53
213 214 4.776322 TGTTGGATCGGGCGGCAG 62.776 66.667 12.47 7.15 0.00 4.85
214 215 4.776322 CTGTTGGATCGGGCGGCA 62.776 66.667 12.47 0.00 0.00 5.69
216 217 4.776322 TGCTGTTGGATCGGGCGG 62.776 66.667 0.00 0.00 0.00 6.13
217 218 3.197790 CTGCTGTTGGATCGGGCG 61.198 66.667 0.00 0.00 0.00 6.13
218 219 2.615227 ATCCTGCTGTTGGATCGGGC 62.615 60.000 0.00 0.00 39.96 6.13
219 220 0.533755 GATCCTGCTGTTGGATCGGG 60.534 60.000 12.66 0.00 46.88 5.14
220 221 2.997899 GATCCTGCTGTTGGATCGG 58.002 57.895 12.66 0.00 46.88 4.18
223 224 1.684248 GCCAAGATCCTGCTGTTGGAT 60.684 52.381 12.12 7.60 46.05 3.41
224 225 0.322816 GCCAAGATCCTGCTGTTGGA 60.323 55.000 12.12 3.45 40.99 3.53
225 226 0.323178 AGCCAAGATCCTGCTGTTGG 60.323 55.000 5.08 5.08 41.34 3.77
226 227 1.542492 AAGCCAAGATCCTGCTGTTG 58.458 50.000 2.37 0.00 35.08 3.33
227 228 2.165998 GAAAGCCAAGATCCTGCTGTT 58.834 47.619 2.37 0.78 35.08 3.16
228 229 1.074405 TGAAAGCCAAGATCCTGCTGT 59.926 47.619 2.37 0.00 35.08 4.40
229 230 1.471684 GTGAAAGCCAAGATCCTGCTG 59.528 52.381 2.37 0.00 35.08 4.41
230 231 1.615384 GGTGAAAGCCAAGATCCTGCT 60.615 52.381 0.00 0.00 36.79 4.24
231 232 0.813821 GGTGAAAGCCAAGATCCTGC 59.186 55.000 0.00 0.00 0.00 4.85
242 243 1.355066 CGAGCTCTTCGGGTGAAAGC 61.355 60.000 12.85 0.00 45.54 3.51
243 244 2.743195 CGAGCTCTTCGGGTGAAAG 58.257 57.895 12.85 0.00 45.54 2.62
244 245 4.988065 CGAGCTCTTCGGGTGAAA 57.012 55.556 12.85 0.00 45.54 2.69
252 253 4.385825 TCTTCTCCTAGATCGAGCTCTTC 58.614 47.826 6.40 8.71 0.00 2.87
253 254 4.389374 CTCTTCTCCTAGATCGAGCTCTT 58.611 47.826 6.40 0.00 0.00 2.85
254 255 3.244561 CCTCTTCTCCTAGATCGAGCTCT 60.245 52.174 6.40 0.00 0.00 4.09
255 256 3.074412 CCTCTTCTCCTAGATCGAGCTC 58.926 54.545 6.40 2.73 0.00 4.09
256 257 2.708861 TCCTCTTCTCCTAGATCGAGCT 59.291 50.000 8.83 8.83 0.00 4.09
257 258 3.134574 TCCTCTTCTCCTAGATCGAGC 57.865 52.381 0.00 0.00 0.00 5.03
258 259 3.440173 GCATCCTCTTCTCCTAGATCGAG 59.560 52.174 0.00 0.00 0.00 4.04
259 260 3.417101 GCATCCTCTTCTCCTAGATCGA 58.583 50.000 0.00 0.00 0.00 3.59
260 261 2.161410 CGCATCCTCTTCTCCTAGATCG 59.839 54.545 0.00 0.00 0.00 3.69
261 262 2.094752 GCGCATCCTCTTCTCCTAGATC 60.095 54.545 0.30 0.00 0.00 2.75
262 263 1.892474 GCGCATCCTCTTCTCCTAGAT 59.108 52.381 0.30 0.00 0.00 1.98
263 264 1.323412 GCGCATCCTCTTCTCCTAGA 58.677 55.000 0.30 0.00 0.00 2.43
264 265 0.039617 CGCGCATCCTCTTCTCCTAG 60.040 60.000 8.75 0.00 0.00 3.02
265 266 1.456196 CCGCGCATCCTCTTCTCCTA 61.456 60.000 8.75 0.00 0.00 2.94
266 267 2.790791 CCGCGCATCCTCTTCTCCT 61.791 63.158 8.75 0.00 0.00 3.69
267 268 2.093537 ATCCGCGCATCCTCTTCTCC 62.094 60.000 8.75 0.00 0.00 3.71
268 269 0.665972 GATCCGCGCATCCTCTTCTC 60.666 60.000 8.75 0.00 0.00 2.87
269 270 1.112315 AGATCCGCGCATCCTCTTCT 61.112 55.000 6.37 0.00 0.00 2.85
270 271 0.665972 GAGATCCGCGCATCCTCTTC 60.666 60.000 6.37 0.00 0.00 2.87
271 272 1.365633 GAGATCCGCGCATCCTCTT 59.634 57.895 6.37 0.00 0.00 2.85
272 273 2.569354 GGAGATCCGCGCATCCTCT 61.569 63.158 6.37 3.04 0.00 3.69
273 274 2.048690 GGAGATCCGCGCATCCTC 60.049 66.667 6.37 7.86 0.00 3.71
274 275 2.522923 AGGAGATCCGCGCATCCT 60.523 61.111 6.37 9.91 42.08 3.24
275 276 2.048690 GAGGAGATCCGCGCATCC 60.049 66.667 6.37 7.67 42.08 3.51
294 295 3.804193 CCTTCTTGAAGGCGCCGC 61.804 66.667 23.20 18.21 32.43 6.53
295 296 0.179084 TATCCTTCTTGAAGGCGCCG 60.179 55.000 23.20 6.32 39.80 6.46
296 297 2.262423 ATATCCTTCTTGAAGGCGCC 57.738 50.000 21.89 21.89 39.80 6.53
297 298 4.212214 CACTAATATCCTTCTTGAAGGCGC 59.788 45.833 21.16 0.00 39.80 6.53
298 299 5.360591 ACACTAATATCCTTCTTGAAGGCG 58.639 41.667 21.16 9.54 39.80 5.52
299 300 7.988028 AGTAACACTAATATCCTTCTTGAAGGC 59.012 37.037 21.16 5.84 39.80 4.35
300 301 9.535878 GAGTAACACTAATATCCTTCTTGAAGG 57.464 37.037 20.21 20.21 41.35 3.46
301 302 9.535878 GGAGTAACACTAATATCCTTCTTGAAG 57.464 37.037 3.55 3.55 0.00 3.02
302 303 9.268282 AGGAGTAACACTAATATCCTTCTTGAA 57.732 33.333 0.00 0.00 33.37 2.69
303 304 8.840200 AGGAGTAACACTAATATCCTTCTTGA 57.160 34.615 0.00 0.00 33.37 3.02
315 316 8.636213 CGGAGGAAATATTAGGAGTAACACTAA 58.364 37.037 0.00 0.00 34.07 2.24
316 317 7.781693 ACGGAGGAAATATTAGGAGTAACACTA 59.218 37.037 0.00 0.00 0.00 2.74
317 318 6.610425 ACGGAGGAAATATTAGGAGTAACACT 59.390 38.462 0.00 0.00 0.00 3.55
318 319 6.814043 ACGGAGGAAATATTAGGAGTAACAC 58.186 40.000 0.00 0.00 0.00 3.32
319 320 6.041296 GGACGGAGGAAATATTAGGAGTAACA 59.959 42.308 0.00 0.00 0.00 2.41
320 321 6.453943 GGACGGAGGAAATATTAGGAGTAAC 58.546 44.000 0.00 0.00 0.00 2.50
321 322 5.541484 GGGACGGAGGAAATATTAGGAGTAA 59.459 44.000 0.00 0.00 0.00 2.24
322 323 5.082425 GGGACGGAGGAAATATTAGGAGTA 58.918 45.833 0.00 0.00 0.00 2.59
323 324 3.902467 GGGACGGAGGAAATATTAGGAGT 59.098 47.826 0.00 0.00 0.00 3.85
324 325 3.901844 TGGGACGGAGGAAATATTAGGAG 59.098 47.826 0.00 0.00 0.00 3.69
325 326 3.931317 TGGGACGGAGGAAATATTAGGA 58.069 45.455 0.00 0.00 0.00 2.94
326 327 4.699925 TTGGGACGGAGGAAATATTAGG 57.300 45.455 0.00 0.00 0.00 2.69
327 328 8.685838 TTATTTTGGGACGGAGGAAATATTAG 57.314 34.615 0.00 0.00 0.00 1.73
328 329 7.229907 GCTTATTTTGGGACGGAGGAAATATTA 59.770 37.037 0.00 0.00 0.00 0.98
329 330 6.040504 GCTTATTTTGGGACGGAGGAAATATT 59.959 38.462 0.00 0.00 0.00 1.28
330 331 5.535030 GCTTATTTTGGGACGGAGGAAATAT 59.465 40.000 0.00 0.00 0.00 1.28
331 332 4.885325 GCTTATTTTGGGACGGAGGAAATA 59.115 41.667 0.00 0.00 0.00 1.40
332 333 3.699538 GCTTATTTTGGGACGGAGGAAAT 59.300 43.478 0.00 0.00 0.00 2.17
333 334 3.086282 GCTTATTTTGGGACGGAGGAAA 58.914 45.455 0.00 0.00 0.00 3.13
334 335 2.040545 TGCTTATTTTGGGACGGAGGAA 59.959 45.455 0.00 0.00 0.00 3.36
335 336 1.631388 TGCTTATTTTGGGACGGAGGA 59.369 47.619 0.00 0.00 0.00 3.71
336 337 2.122783 TGCTTATTTTGGGACGGAGG 57.877 50.000 0.00 0.00 0.00 4.30
337 338 3.545703 AGATGCTTATTTTGGGACGGAG 58.454 45.455 0.00 0.00 0.00 4.63
338 339 3.054728 TGAGATGCTTATTTTGGGACGGA 60.055 43.478 0.00 0.00 0.00 4.69
339 340 3.278574 TGAGATGCTTATTTTGGGACGG 58.721 45.455 0.00 0.00 0.00 4.79
340 341 4.396166 AGTTGAGATGCTTATTTTGGGACG 59.604 41.667 0.00 0.00 0.00 4.79
341 342 5.904362 AGTTGAGATGCTTATTTTGGGAC 57.096 39.130 0.00 0.00 0.00 4.46
342 343 6.916360 AAAGTTGAGATGCTTATTTTGGGA 57.084 33.333 0.00 0.00 0.00 4.37
343 344 7.645340 CGATAAAGTTGAGATGCTTATTTTGGG 59.355 37.037 0.00 0.00 0.00 4.12
344 345 8.397906 TCGATAAAGTTGAGATGCTTATTTTGG 58.602 33.333 0.00 0.00 0.00 3.28
345 346 9.773328 TTCGATAAAGTTGAGATGCTTATTTTG 57.227 29.630 0.00 0.00 0.00 2.44
373 374 1.066929 GGCACAGCGGGATGAATTTTT 60.067 47.619 0.00 0.00 0.00 1.94
374 375 0.532115 GGCACAGCGGGATGAATTTT 59.468 50.000 0.00 0.00 0.00 1.82
375 376 0.323725 AGGCACAGCGGGATGAATTT 60.324 50.000 0.00 0.00 0.00 1.82
376 377 1.033746 CAGGCACAGCGGGATGAATT 61.034 55.000 0.00 0.00 0.00 2.17
377 378 1.452651 CAGGCACAGCGGGATGAAT 60.453 57.895 0.00 0.00 0.00 2.57
378 379 2.046023 CAGGCACAGCGGGATGAA 60.046 61.111 0.00 0.00 0.00 2.57
379 380 3.321648 ACAGGCACAGCGGGATGA 61.322 61.111 0.00 0.00 0.00 2.92
380 381 3.129502 CACAGGCACAGCGGGATG 61.130 66.667 0.00 0.00 0.00 3.51
381 382 4.415150 CCACAGGCACAGCGGGAT 62.415 66.667 0.00 0.00 0.00 3.85
385 386 4.935495 ACCACCACAGGCACAGCG 62.935 66.667 0.00 0.00 0.00 5.18
386 387 2.127232 AAACCACCACAGGCACAGC 61.127 57.895 0.00 0.00 0.00 4.40
387 388 1.037030 ACAAACCACCACAGGCACAG 61.037 55.000 0.00 0.00 0.00 3.66
388 389 1.000270 ACAAACCACCACAGGCACA 60.000 52.632 0.00 0.00 0.00 4.57
389 390 1.319614 ACACAAACCACCACAGGCAC 61.320 55.000 0.00 0.00 0.00 5.01
390 391 1.000270 ACACAAACCACCACAGGCA 60.000 52.632 0.00 0.00 0.00 4.75
391 392 0.751643 AGACACAAACCACCACAGGC 60.752 55.000 0.00 0.00 0.00 4.85
392 393 1.308998 GAGACACAAACCACCACAGG 58.691 55.000 0.00 0.00 0.00 4.00
393 394 2.036958 TGAGACACAAACCACCACAG 57.963 50.000 0.00 0.00 0.00 3.66
394 395 2.088423 GTTGAGACACAAACCACCACA 58.912 47.619 0.00 0.00 40.36 4.17
395 396 2.365582 AGTTGAGACACAAACCACCAC 58.634 47.619 0.00 0.00 40.36 4.16
396 397 2.799126 AGTTGAGACACAAACCACCA 57.201 45.000 0.00 0.00 40.36 4.17
397 398 5.570234 TTAAAGTTGAGACACAAACCACC 57.430 39.130 0.00 0.00 40.36 4.61
445 446 8.964476 TTTCTCAAGATAAGTGTCTCAACTTT 57.036 30.769 0.00 0.00 40.77 2.66
446 447 8.964476 TTTTCTCAAGATAAGTGTCTCAACTT 57.036 30.769 0.00 0.00 42.89 2.66
447 448 7.659390 CCTTTTCTCAAGATAAGTGTCTCAACT 59.341 37.037 8.69 0.00 33.23 3.16
448 449 7.095017 CCCTTTTCTCAAGATAAGTGTCTCAAC 60.095 40.741 8.69 0.00 33.23 3.18
449 450 6.936900 CCCTTTTCTCAAGATAAGTGTCTCAA 59.063 38.462 8.69 0.00 33.23 3.02
450 451 6.270000 TCCCTTTTCTCAAGATAAGTGTCTCA 59.730 38.462 8.69 0.00 33.23 3.27
451 452 6.702329 TCCCTTTTCTCAAGATAAGTGTCTC 58.298 40.000 8.69 0.00 33.23 3.36
452 453 6.271159 ACTCCCTTTTCTCAAGATAAGTGTCT 59.729 38.462 8.69 0.00 33.23 3.41
453 454 6.468543 ACTCCCTTTTCTCAAGATAAGTGTC 58.531 40.000 8.69 0.00 33.23 3.67
454 455 6.441088 ACTCCCTTTTCTCAAGATAAGTGT 57.559 37.500 8.69 3.66 33.23 3.55
455 456 9.454859 AAATACTCCCTTTTCTCAAGATAAGTG 57.545 33.333 8.69 0.00 33.23 3.16
460 461 8.055790 CCCTAAAATACTCCCTTTTCTCAAGAT 58.944 37.037 0.00 0.00 0.00 2.40
461 462 7.402862 CCCTAAAATACTCCCTTTTCTCAAGA 58.597 38.462 0.00 0.00 0.00 3.02
462 463 6.095580 GCCCTAAAATACTCCCTTTTCTCAAG 59.904 42.308 0.00 0.00 0.00 3.02
463 464 5.949952 GCCCTAAAATACTCCCTTTTCTCAA 59.050 40.000 0.00 0.00 0.00 3.02
464 465 5.253096 AGCCCTAAAATACTCCCTTTTCTCA 59.747 40.000 0.00 0.00 0.00 3.27
465 466 5.756918 AGCCCTAAAATACTCCCTTTTCTC 58.243 41.667 0.00 0.00 0.00 2.87
466 467 5.629366 CGAGCCCTAAAATACTCCCTTTTCT 60.629 44.000 0.00 0.00 0.00 2.52
467 468 4.575236 CGAGCCCTAAAATACTCCCTTTTC 59.425 45.833 0.00 0.00 0.00 2.29
468 469 4.524053 CGAGCCCTAAAATACTCCCTTTT 58.476 43.478 0.00 0.00 0.00 2.27
469 470 3.684697 GCGAGCCCTAAAATACTCCCTTT 60.685 47.826 0.00 0.00 0.00 3.11
470 471 2.158798 GCGAGCCCTAAAATACTCCCTT 60.159 50.000 0.00 0.00 0.00 3.95
471 472 1.416772 GCGAGCCCTAAAATACTCCCT 59.583 52.381 0.00 0.00 0.00 4.20
472 473 1.140252 TGCGAGCCCTAAAATACTCCC 59.860 52.381 0.00 0.00 0.00 4.30
473 474 2.158943 AGTGCGAGCCCTAAAATACTCC 60.159 50.000 0.00 0.00 0.00 3.85
474 475 3.180891 AGTGCGAGCCCTAAAATACTC 57.819 47.619 0.00 0.00 0.00 2.59
475 476 4.161754 AGTTAGTGCGAGCCCTAAAATACT 59.838 41.667 1.81 0.00 0.00 2.12
476 477 4.439968 AGTTAGTGCGAGCCCTAAAATAC 58.560 43.478 1.81 0.00 0.00 1.89
492 493 2.157738 ACGCGGTGAGAAGTAGTTAGT 58.842 47.619 12.47 0.00 0.00 2.24
517 518 2.736826 CCTCCTTCTTCTCGCCCCC 61.737 68.421 0.00 0.00 0.00 5.40
523 524 5.859495 TGAAAGTTTCTCCTCCTTCTTCTC 58.141 41.667 16.33 0.00 0.00 2.87
524 525 5.896073 TGAAAGTTTCTCCTCCTTCTTCT 57.104 39.130 16.33 0.00 0.00 2.85
525 526 6.514212 GCTTTGAAAGTTTCTCCTCCTTCTTC 60.514 42.308 16.33 0.00 0.00 2.87
532 533 3.304996 GGCTGCTTTGAAAGTTTCTCCTC 60.305 47.826 16.33 4.77 0.00 3.71
535 536 2.625314 AGGGCTGCTTTGAAAGTTTCTC 59.375 45.455 16.33 4.46 0.00 2.87
561 563 1.227999 ACATATGCATGCGTACGGCC 61.228 55.000 21.59 1.18 42.61 6.13
562 564 0.110688 CACATATGCATGCGTACGGC 60.111 55.000 21.59 12.61 43.96 5.68
669 675 2.355756 CGCATGAATTGGGAAGGTACAG 59.644 50.000 0.00 0.00 40.62 2.74
672 678 2.639065 GACGCATGAATTGGGAAGGTA 58.361 47.619 0.00 0.00 40.62 3.08
678 684 1.067516 GAATGGGACGCATGAATTGGG 59.932 52.381 5.67 0.00 43.63 4.12
679 685 2.026641 AGAATGGGACGCATGAATTGG 58.973 47.619 5.67 0.00 0.00 3.16
680 686 2.033801 GGAGAATGGGACGCATGAATTG 59.966 50.000 5.67 0.00 0.00 2.32
681 687 2.301346 GGAGAATGGGACGCATGAATT 58.699 47.619 5.67 0.00 0.00 2.17
682 688 1.212688 TGGAGAATGGGACGCATGAAT 59.787 47.619 5.67 0.00 0.00 2.57
683 689 0.617935 TGGAGAATGGGACGCATGAA 59.382 50.000 5.67 0.00 0.00 2.57
686 696 1.463674 GTTTGGAGAATGGGACGCAT 58.536 50.000 0.00 0.00 0.00 4.73
739 752 3.142174 GTTTCTCCCAAGAGTGAACCAG 58.858 50.000 0.00 0.00 41.26 4.00
751 764 3.256704 AGGTGATGGTTAGTTTCTCCCA 58.743 45.455 0.00 0.00 0.00 4.37
935 954 6.763135 TGGATCGAAACAGTATACTAGTACGT 59.237 38.462 4.31 0.00 0.00 3.57
972 993 4.200838 TCGATGTGGAAAGCTATCAACA 57.799 40.909 0.00 0.00 37.64 3.33
981 1002 0.461870 TGGCCGATCGATGTGGAAAG 60.462 55.000 18.66 0.00 0.00 2.62
996 1017 2.280079 CCCCCTTCCTTCATGGCC 59.720 66.667 0.00 0.00 35.26 5.36
1320 1344 2.022764 TGAAATCATCGACGGCACAT 57.977 45.000 0.00 0.00 0.00 3.21
1323 1347 1.134551 TCCATGAAATCATCGACGGCA 60.135 47.619 0.00 0.00 33.61 5.69
1347 1371 0.179026 CCTGCTCCATCTCCCACATG 60.179 60.000 0.00 0.00 0.00 3.21
1450 1474 2.280524 CGTGCCCGGACTCAACAA 60.281 61.111 0.73 0.00 0.00 2.83
1516 1546 0.239347 CGACTTAGACCGTCGTTGGT 59.761 55.000 4.57 0.93 46.56 3.67
1535 1565 1.568025 GTTTCTTGCCACGGTCGAC 59.432 57.895 7.13 7.13 0.00 4.20
1536 1566 1.595929 GGTTTCTTGCCACGGTCGA 60.596 57.895 0.00 0.00 0.00 4.20
1537 1567 1.164041 AAGGTTTCTTGCCACGGTCG 61.164 55.000 0.00 0.00 0.00 4.79
1546 1576 2.290641 CTGGACCGTTGAAGGTTTCTTG 59.709 50.000 0.00 0.00 46.09 3.02
1558 1588 1.623811 AGATTACAGCACTGGACCGTT 59.376 47.619 2.21 0.00 34.19 4.44
1559 1589 1.267121 AGATTACAGCACTGGACCGT 58.733 50.000 2.21 0.00 34.19 4.83
1567 1597 5.703130 AGGAAGACAAAGAAGATTACAGCAC 59.297 40.000 0.00 0.00 0.00 4.40
1568 1598 5.869579 AGGAAGACAAAGAAGATTACAGCA 58.130 37.500 0.00 0.00 0.00 4.41
1570 1600 8.614469 AAAGAGGAAGACAAAGAAGATTACAG 57.386 34.615 0.00 0.00 0.00 2.74
1584 1614 3.300857 GCGCAAAGAAAAAGAGGAAGAC 58.699 45.455 0.30 0.00 0.00 3.01
1602 1632 0.110823 CAAGACAACAACCTACGCGC 60.111 55.000 5.73 0.00 0.00 6.86
1605 1635 4.272504 ACATCAACAAGACAACAACCTACG 59.727 41.667 0.00 0.00 0.00 3.51
1611 1641 5.509771 CATTCGACATCAACAAGACAACAA 58.490 37.500 0.00 0.00 0.00 2.83
1612 1642 4.554526 GCATTCGACATCAACAAGACAACA 60.555 41.667 0.00 0.00 0.00 3.33
1613 1643 3.908382 GCATTCGACATCAACAAGACAAC 59.092 43.478 0.00 0.00 0.00 3.32
1614 1644 3.563390 TGCATTCGACATCAACAAGACAA 59.437 39.130 0.00 0.00 0.00 3.18
1615 1645 3.137533 TGCATTCGACATCAACAAGACA 58.862 40.909 0.00 0.00 0.00 3.41
1616 1646 3.811722 TGCATTCGACATCAACAAGAC 57.188 42.857 0.00 0.00 0.00 3.01
1617 1647 3.752747 ACATGCATTCGACATCAACAAGA 59.247 39.130 0.00 0.00 0.00 3.02
1618 1648 4.087510 ACATGCATTCGACATCAACAAG 57.912 40.909 0.00 0.00 0.00 3.16
1644 1674 4.883585 TCAAGCAGGCGATGAAGAATTAAT 59.116 37.500 0.00 0.00 0.00 1.40
1676 1706 1.414919 TCACGTCAACACCCTAAGCTT 59.585 47.619 3.48 3.48 0.00 3.74
1692 1722 5.324739 AGAAACGTTGACAACTTATCACG 57.675 39.130 16.02 4.51 0.00 4.35
1704 1742 3.138304 CTGATGGACCAAGAAACGTTGA 58.862 45.455 0.00 0.00 0.00 3.18
1756 1796 8.853077 ACAATGAACACCATATACATATCTGG 57.147 34.615 2.56 2.56 36.37 3.86
1774 1814 9.166173 CATCTTCTGTCCATAGTTTACAATGAA 57.834 33.333 0.00 0.00 0.00 2.57
1828 1874 2.025155 TGCTCTTAGGTGGATCTCGTC 58.975 52.381 0.00 0.00 0.00 4.20
1865 1911 0.596577 GTTGCCCGGGAAAAGACTTC 59.403 55.000 29.31 2.27 0.00 3.01
1868 1914 0.822121 ACAGTTGCCCGGGAAAAGAC 60.822 55.000 29.31 9.73 0.00 3.01
1875 1921 1.067250 CACAAAACAGTTGCCCGGG 59.933 57.895 19.09 19.09 0.00 5.73
1877 1923 1.555477 GTTCACAAAACAGTTGCCCG 58.445 50.000 0.00 0.00 0.00 6.13
1900 1946 4.142182 GCTCTGAGCATCCTTAGCCTATAG 60.142 50.000 24.02 0.00 41.89 1.31
1938 1984 9.571810 TTTGCTTATAAGACATGCAAGTTATTG 57.428 29.630 16.85 0.00 43.13 1.90
2096 2152 9.243105 ACCTTGTCATGCATAGTAAAAATAACT 57.757 29.630 0.00 0.00 0.00 2.24
2105 2161 7.797062 TGGTTTATACCTTGTCATGCATAGTA 58.203 34.615 0.00 0.00 45.27 1.82
2129 2187 2.484264 GACCGTTTGGACTTGGAGAATG 59.516 50.000 0.00 0.00 39.21 2.67
2148 2206 2.128035 CAAGTGACTCACGAGTTGGAC 58.872 52.381 0.38 0.00 42.66 4.02
2188 2246 6.858478 GCTTTGAGTTGTCTAGAATGGTTTTC 59.142 38.462 0.00 0.00 0.00 2.29
2193 2251 5.615544 CGTTGCTTTGAGTTGTCTAGAATGG 60.616 44.000 0.00 0.00 0.00 3.16
2194 2252 5.377358 CGTTGCTTTGAGTTGTCTAGAATG 58.623 41.667 0.00 0.00 0.00 2.67
2195 2253 4.083802 GCGTTGCTTTGAGTTGTCTAGAAT 60.084 41.667 0.00 0.00 0.00 2.40
2196 2254 3.247648 GCGTTGCTTTGAGTTGTCTAGAA 59.752 43.478 0.00 0.00 0.00 2.10
2197 2255 2.800544 GCGTTGCTTTGAGTTGTCTAGA 59.199 45.455 0.00 0.00 0.00 2.43
2198 2256 2.096218 GGCGTTGCTTTGAGTTGTCTAG 60.096 50.000 0.00 0.00 0.00 2.43
2200 2258 0.663153 GGCGTTGCTTTGAGTTGTCT 59.337 50.000 0.00 0.00 0.00 3.41
2201 2259 0.380378 TGGCGTTGCTTTGAGTTGTC 59.620 50.000 0.00 0.00 0.00 3.18
2202 2260 0.814457 TTGGCGTTGCTTTGAGTTGT 59.186 45.000 0.00 0.00 0.00 3.32
2204 2262 0.385390 CCTTGGCGTTGCTTTGAGTT 59.615 50.000 0.00 0.00 0.00 3.01
2206 2264 1.372128 GCCTTGGCGTTGCTTTGAG 60.372 57.895 0.00 0.00 0.00 3.02
2207 2265 0.536233 TAGCCTTGGCGTTGCTTTGA 60.536 50.000 5.95 0.00 36.57 2.69
2208 2266 0.313672 TTAGCCTTGGCGTTGCTTTG 59.686 50.000 5.95 0.00 36.57 2.77
2209 2267 1.202348 GATTAGCCTTGGCGTTGCTTT 59.798 47.619 5.95 0.00 36.57 3.51
2210 2268 0.811281 GATTAGCCTTGGCGTTGCTT 59.189 50.000 5.95 0.00 36.57 3.91
2211 2269 0.035056 AGATTAGCCTTGGCGTTGCT 60.035 50.000 5.95 0.68 39.10 3.91
2212 2270 1.599542 CTAGATTAGCCTTGGCGTTGC 59.400 52.381 5.95 0.00 0.00 4.17
2213 2271 2.866762 GTCTAGATTAGCCTTGGCGTTG 59.133 50.000 5.95 0.00 0.00 4.10
2214 2272 2.481449 CGTCTAGATTAGCCTTGGCGTT 60.481 50.000 5.95 0.00 33.62 4.84
2215 2273 1.067212 CGTCTAGATTAGCCTTGGCGT 59.933 52.381 5.95 0.00 33.62 5.68
2216 2274 1.772182 CGTCTAGATTAGCCTTGGCG 58.228 55.000 5.95 0.00 31.78 5.69
2217 2275 1.503294 GCGTCTAGATTAGCCTTGGC 58.497 55.000 2.97 2.97 0.00 4.52
2218 2276 2.156343 GGCGTCTAGATTAGCCTTGG 57.844 55.000 22.01 0.00 45.67 3.61
2223 2281 7.478520 TTTTCTAAATGGCGTCTAGATTAGC 57.521 36.000 0.00 2.39 0.00 3.09
2224 2282 8.552034 CCTTTTTCTAAATGGCGTCTAGATTAG 58.448 37.037 0.00 0.00 0.00 1.73
2225 2283 7.012044 GCCTTTTTCTAAATGGCGTCTAGATTA 59.988 37.037 11.68 0.00 32.12 1.75
2226 2284 6.183360 GCCTTTTTCTAAATGGCGTCTAGATT 60.183 38.462 11.68 0.00 32.12 2.40
2227 2285 5.297029 GCCTTTTTCTAAATGGCGTCTAGAT 59.703 40.000 11.68 0.00 32.12 1.98
2228 2286 4.634443 GCCTTTTTCTAAATGGCGTCTAGA 59.366 41.667 11.68 0.00 32.12 2.43
2229 2287 4.636206 AGCCTTTTTCTAAATGGCGTCTAG 59.364 41.667 17.86 0.00 39.97 2.43
2230 2288 4.585879 AGCCTTTTTCTAAATGGCGTCTA 58.414 39.130 17.86 0.00 39.97 2.59
2231 2289 3.421844 AGCCTTTTTCTAAATGGCGTCT 58.578 40.909 17.86 4.34 39.97 4.18
2232 2290 3.850122 AGCCTTTTTCTAAATGGCGTC 57.150 42.857 17.86 0.00 39.97 5.19
2233 2291 5.652452 AGATTAGCCTTTTTCTAAATGGCGT 59.348 36.000 17.86 11.30 39.97 5.68
2234 2292 6.136541 AGATTAGCCTTTTTCTAAATGGCG 57.863 37.500 17.86 0.00 39.97 5.69
2235 2293 9.302345 GTTTAGATTAGCCTTTTTCTAAATGGC 57.698 33.333 16.81 16.81 40.69 4.40
2236 2294 9.503427 CGTTTAGATTAGCCTTTTTCTAAATGG 57.497 33.333 12.46 2.86 40.69 3.16
2237 2295 9.010366 GCGTTTAGATTAGCCTTTTTCTAAATG 57.990 33.333 14.63 14.63 43.75 2.32
2238 2296 8.736244 TGCGTTTAGATTAGCCTTTTTCTAAAT 58.264 29.630 7.11 0.00 40.69 1.40
2239 2297 8.101654 TGCGTTTAGATTAGCCTTTTTCTAAA 57.898 30.769 0.00 0.00 37.98 1.85
2240 2298 7.675962 TGCGTTTAGATTAGCCTTTTTCTAA 57.324 32.000 0.00 0.00 0.00 2.10
2241 2299 7.389607 ACTTGCGTTTAGATTAGCCTTTTTCTA 59.610 33.333 0.00 0.00 0.00 2.10
2242 2300 6.206829 ACTTGCGTTTAGATTAGCCTTTTTCT 59.793 34.615 0.00 0.00 0.00 2.52
2243 2301 6.379386 ACTTGCGTTTAGATTAGCCTTTTTC 58.621 36.000 0.00 0.00 0.00 2.29
2244 2302 6.327279 ACTTGCGTTTAGATTAGCCTTTTT 57.673 33.333 0.00 0.00 0.00 1.94
2245 2303 5.959618 ACTTGCGTTTAGATTAGCCTTTT 57.040 34.783 0.00 0.00 0.00 2.27
2246 2304 5.472137 TCAACTTGCGTTTAGATTAGCCTTT 59.528 36.000 0.00 0.00 0.00 3.11
2247 2305 5.001232 TCAACTTGCGTTTAGATTAGCCTT 58.999 37.500 0.00 0.00 0.00 4.35
2248 2306 4.575885 TCAACTTGCGTTTAGATTAGCCT 58.424 39.130 0.00 0.00 0.00 4.58
2249 2307 4.939509 TCAACTTGCGTTTAGATTAGCC 57.060 40.909 0.00 0.00 0.00 3.93
2250 2308 7.685594 AGTATTCAACTTGCGTTTAGATTAGC 58.314 34.615 0.00 0.00 33.35 3.09
2271 2329 9.523168 GGTTATCTAGATGTGTAGGAGAAGTAT 57.477 37.037 15.79 0.00 0.00 2.12
2272 2330 8.500238 TGGTTATCTAGATGTGTAGGAGAAGTA 58.500 37.037 15.79 0.00 0.00 2.24
2273 2331 7.285858 GTGGTTATCTAGATGTGTAGGAGAAGT 59.714 40.741 15.79 0.00 0.00 3.01
2274 2332 7.255660 GGTGGTTATCTAGATGTGTAGGAGAAG 60.256 44.444 15.79 0.00 0.00 2.85
2275 2333 6.550108 GGTGGTTATCTAGATGTGTAGGAGAA 59.450 42.308 15.79 0.00 0.00 2.87
2276 2334 6.069331 GGTGGTTATCTAGATGTGTAGGAGA 58.931 44.000 15.79 0.00 0.00 3.71
2277 2335 5.244178 GGGTGGTTATCTAGATGTGTAGGAG 59.756 48.000 15.79 0.00 0.00 3.69
2278 2336 5.145564 GGGTGGTTATCTAGATGTGTAGGA 58.854 45.833 15.79 0.00 0.00 2.94
2279 2337 4.283722 GGGGTGGTTATCTAGATGTGTAGG 59.716 50.000 15.79 0.00 0.00 3.18
2280 2338 5.148502 AGGGGTGGTTATCTAGATGTGTAG 58.851 45.833 15.79 0.00 0.00 2.74
2281 2339 5.145564 GAGGGGTGGTTATCTAGATGTGTA 58.854 45.833 15.79 0.00 0.00 2.90
2282 2340 3.967987 GAGGGGTGGTTATCTAGATGTGT 59.032 47.826 15.79 0.00 0.00 3.72
2283 2341 3.005897 CGAGGGGTGGTTATCTAGATGTG 59.994 52.174 15.79 0.00 0.00 3.21
2284 2342 3.231818 CGAGGGGTGGTTATCTAGATGT 58.768 50.000 15.79 0.00 0.00 3.06
2285 2343 3.005897 CACGAGGGGTGGTTATCTAGATG 59.994 52.174 15.79 0.00 43.16 2.90
2286 2344 3.231818 CACGAGGGGTGGTTATCTAGAT 58.768 50.000 10.73 10.73 43.16 1.98
2287 2345 2.662866 CACGAGGGGTGGTTATCTAGA 58.337 52.381 0.00 0.00 43.16 2.43
2297 2355 2.669569 CAGTTGCCACGAGGGGTG 60.670 66.667 0.00 0.00 46.57 4.61
2298 2356 2.847234 TCAGTTGCCACGAGGGGT 60.847 61.111 0.00 0.00 37.04 4.95
2299 2357 2.046892 CTCAGTTGCCACGAGGGG 60.047 66.667 0.00 0.00 37.04 4.79
2300 2358 2.743928 GCTCAGTTGCCACGAGGG 60.744 66.667 0.00 0.00 40.85 4.30
2308 2366 2.383527 CGAACCTCGGCTCAGTTGC 61.384 63.158 0.00 0.00 36.00 4.17
2309 2367 1.006102 ACGAACCTCGGCTCAGTTG 60.006 57.895 0.67 0.00 45.59 3.16
2310 2368 1.289380 GACGAACCTCGGCTCAGTT 59.711 57.895 0.67 0.00 46.20 3.16
2311 2369 2.963371 GACGAACCTCGGCTCAGT 59.037 61.111 0.67 0.00 46.20 3.41
2317 2375 2.182030 GAGCCTGACGAACCTCGG 59.818 66.667 0.67 0.00 45.59 4.63
2318 2376 1.153939 CTGAGCCTGACGAACCTCG 60.154 63.158 0.00 0.00 46.93 4.63
2319 2377 0.820871 ATCTGAGCCTGACGAACCTC 59.179 55.000 0.00 0.00 0.00 3.85
2320 2378 1.270907 AATCTGAGCCTGACGAACCT 58.729 50.000 0.00 0.00 0.00 3.50
2321 2379 2.100605 AAATCTGAGCCTGACGAACC 57.899 50.000 0.00 0.00 0.00 3.62
2322 2380 3.748568 AGAAAAATCTGAGCCTGACGAAC 59.251 43.478 0.00 0.00 0.00 3.95
2323 2381 3.748048 CAGAAAAATCTGAGCCTGACGAA 59.252 43.478 0.00 0.00 39.99 3.85
2324 2382 3.006859 TCAGAAAAATCTGAGCCTGACGA 59.993 43.478 4.49 0.00 41.34 4.20
2325 2383 3.124297 GTCAGAAAAATCTGAGCCTGACG 59.876 47.826 8.70 0.00 46.11 4.35
2326 2384 4.676849 GTCAGAAAAATCTGAGCCTGAC 57.323 45.455 8.70 0.00 46.11 3.51
2332 2390 3.190118 GTGGCAGGTCAGAAAAATCTGAG 59.810 47.826 8.70 0.00 46.11 3.35
2333 2391 3.149196 GTGGCAGGTCAGAAAAATCTGA 58.851 45.455 4.49 4.49 43.68 3.27
2334 2392 3.152341 AGTGGCAGGTCAGAAAAATCTG 58.848 45.455 0.00 0.00 39.00 2.90
2335 2393 3.515602 AGTGGCAGGTCAGAAAAATCT 57.484 42.857 0.00 0.00 0.00 2.40
2336 2394 3.858503 GCAAGTGGCAGGTCAGAAAAATC 60.859 47.826 0.00 0.00 43.97 2.17
2337 2395 2.036346 GCAAGTGGCAGGTCAGAAAAAT 59.964 45.455 0.00 0.00 43.97 1.82
2338 2396 1.408702 GCAAGTGGCAGGTCAGAAAAA 59.591 47.619 0.00 0.00 43.97 1.94
2339 2397 1.032014 GCAAGTGGCAGGTCAGAAAA 58.968 50.000 0.00 0.00 43.97 2.29
2340 2398 2.719376 GCAAGTGGCAGGTCAGAAA 58.281 52.632 0.00 0.00 43.97 2.52
2341 2399 4.481195 GCAAGTGGCAGGTCAGAA 57.519 55.556 0.00 0.00 43.97 3.02
2354 2412 5.467035 TTTTTGGGAATTAGGACTGCAAG 57.533 39.130 0.00 0.00 42.29 4.01
2395 2598 2.637382 TGTTGACATCACAGGCTTAGGA 59.363 45.455 0.00 0.00 0.00 2.94
2465 2668 1.687123 GGACGGTAGCCTATGTCATGT 59.313 52.381 8.68 0.00 33.04 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.