>input_sequence_78533
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------------------------------------------------------------ATGAAGGAAGGGGGTCAGAA
GAAGAACATCCTGGCCAAGACGCTCCAGAAGTGCCGGTCGCTGGGCCACCGGAGGCAGCCGGCAGCCTACGGCGGTGGCG
GCGCTGGCAGCAGCGCCAGCGCCCCGGCCTCGCCACGCGCGGCCGATGGCAG---GGCGGCGTGGGCCGTTCCGGCGGGG
TACTTCGCCGTGCTCGTGGGGCCAGAGAAGGAGCGGTTCGCGGTGCGCGCCAGGTGCGCAAACCACCCCCTGTTCCGGGC
GCTGCTGGACGAGGCCGAGACGGAGTACGGCTTCGCCGGCTGCGTCGGCCCGCTCGAGCTGCCATGTGCCGTCGATGATT
TCATGGAGGTCATGTGGGAGATGGAGCAGGGCGGCGGCGTCGCGTCGTCGCCCAGCTGCGCTCGCTTCGCCGGCAGGGGC
CACCACCAACAACAACAGCGCCACGGGTACCACTTGTTGAGTCCGGGCACGTTCG------TCGTCGCCGGCCGGTCGTG
A-------------------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G350800
GAACATGCCAGACGGTCGACGACGAAGGCAAGCCATGACCCTGCTCATCTTGCAACCATCATCGTGCCACACAAGTCGCA
ACGCCACATCCGCACCGCCAGCCGGGCACCTGCCGACCACGATGTCGTGCACGTCCAGCCGCAAGGAAGAGCAGGAGGGA
TCACGGTCTTCAAGACGGCGCCCCCAAGAGGGAGAGCGATGTTGGAGACGACGCTGCCGCCCGATCCAACAGCAGGATCT
TGGCTTTCACCCGAAGAGCTCGATCTAGGAGAAGAGGATGCGCGGATCTCCTCGGCGGCGCCTTCAAGAAGGATATTAGT
GTTACTCCTAATATTTCCTCCGTCCCAAAATAAGCATCTCAACTTTATCGAAAAAAAATTCATCCCGCTGTGCCTGTGGT
GGTTTGTGTCTCAACTTTAATATAACTTTATATTAAAGTTAGTATAAAGTTGAGACACTTATCTTGAGAAAAGGGAGTAT
TTTAGGGCTCGCACTAACTACTTCTCACCGCGTCTCAGGGGGCGAGAAGAAGGAGGAGAAACTTTCAAA-GCAGCCCTCG
CCGGCCGTACGCATGCATATGTGCCATTCTTAGCTTGCTCTTAAT----CTGAACCTCTTCTTCTTGCTACCACCGCGAG
AAAGCAGCTGAGGCGCTCCCTTTCTCCTTTAAATCTGTACCTTCCCAAT----TCATGCGTCCCATTCTCCAAA---CCA
GCACCTCATACTCTTCGTTGCTTTCGTAACTCTGGTTCACTCTTGGGAGAAAC----TAACCATCACCTCATACTCCGCC
GATGCCTCCTTCGTCGCCTCTTGCGCCCGTCCACAAAGAAGCATGAACTACACCGGGAGCGCCCTCTCCCTCCTCGCGCC
AAAAGCCACAAAGGACATGTCCCGCCTGCACCAAGGCTACGACCGTGGCTAGCTCCA--TAGCTACTACCCCCACGTACT
AGTATA--CTGTTTCGATCCAGTCCCGTTGTCTGTTGATAGCTTTCCACATCGATCGGCCATGAAGGAAGGGGGTCAGAA
GAAGAACATCCTGGCCAAGACGCTCCAGAAGTGCCGGTCGCTGGGCCACCGGAGGCAGCCGGCAGCCTACGGCGGTGGCG
GCGCTGGCAGCAGCGCCAGCGCCCCGGCCTCGCCACGCGCGGCCGATGGCAG---GGCGGCGTGGGCCGTTCCGGCGGGG
TACTTCGCCGTGCTCGTGGGGCCAGAGAAGGAGCGGTTCGCGGTGCGCGCCAGGTGCGCAAACCACCCCCTGTTCCGGGC
GCTGCTGGACGAGGCCGAGACGGAGTACGGCTTCGCCGGCTGCGTCGGCCCGCTCGAGCTGCCATGTGCCGTCGATGATT
TCATGGAGGTCATGTGGGAGATGGAGCAGGGCGGCGGCGTCGCGTCGTCGCCCAGCTGCGCTCGCTTCGCCGGCAGGGGC
CACCACCAACAACAACAGCGCCACGGGTACCACTTGTTGAGTCCGGGCACGTTCG------TCGTCGCCGGCCGGTCGTG
ATCACCATGCACGTGCTTGCTCTTCACCAACGACGGTCTAAGTCGTCGACCGTGGCAAGAAACCTTCAACGGTCCAGTGC
TGTAATCTTCTTTGTCTTCCTCTTTTTCTTTGCGCGTAGGTTGTTGTCTTGTTGATGTCGAATGCATGTAGAAATTAATT
CTTCATCGCCTGCTTGATGGATTGCAAGCTTAGGGTGTTGACGTG--------ATAAGTTGTCAACGTTTCTTGGTCCAT
CAGTTAGTGT--ATTTCGCGTGTTCTCCATGTGAACCAGATATGTATATGGTGTTCAT------TGTAAACTATGGACAG
AAGATGCTTCTTTTTTGTTCTGGACGAAGTGGAGACGAGATCCACCTAAGAGCACTCCGGAACCGTGATCGAAGTCTTTT
CCCGGGCAACTGTTTTGTGAACCTGCTATAGGCTAAGGATGCTCAGAGCGGAAATAACATAAACAATAACTTGCATGTCT
TATAAGCAAAAAATATGATGTGACGAGTAATGAAAAAA-ATGCAAATGAAGTAACATAACATGTTACCATCACATAATGA
TTTT---------ATGATTTTATAAAGTAATAATCAAAGCTTTATATAAACATATGCATGTTATTAATCTAAGTTATTTT
T--ACTATGCATGACAAGGTATAAACCATTCTCCAAGTCCAAACGGTCCAACTCGTGAGTCACTTGCGCCCACAACCAGC
ACTAAGAAAACCATTCTAGACAACTCAAAGCAACGCCAAGGCTAATCTAGACGCCATTTAGAAAAAGGCTAATCTAAACG
CAAGTTGAATACTTCTCCTACACATCTAGATAACCACCCCTCGTGGCAACTGAGCCGAGGTTCGTCAGGCTCAGATTTTT
CTGACCTGCCACTTG-----------------------------------------------------------------
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CAGTCCTAATTCCCAAAAAAATAAAAATGTGTCGTGATCCTAAGCCTGTGATGTCAACACACACAATTATTGTCATTATA
GTAAAAATACACAATATATAAATATAAACATGACATAGGCTACCGTCCCAAAAT
>chr7A_478
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-----------------------------------------------------------------------------TAT
TTTAGGGCTCGGCCTAGCTACCTCTCACCGCGTCTCAAGGGGCC--AAGAAGAAGAAGAAACTTTCAAA-GCAGCCCTCA
CCCC----ACGCATGCATATGTGCCATTCTTAGCTTGCTCTTAATTAATCTGAACCTCTTCTTCTTGCTACCACCGCGAG
AAAGCAGCTGAGGCGCTCCCTTTCTCCTTTAAATTTGGACCTTAATTTCCAGCTCCTGCGTCCCATTCTCCAAACGCCCA
GCACCTCATACTCTTCGTTGCTTTCCTAACTTTGGTTCACTCTCGGGAGAAGCTAATTAACCATCACCTCATACTCCGCC
GATGCCTCCTTCGCCTCTTG------CCGTCCGCGAAGAACCATGAACTACACCGGGAGCGCCCTCTCCCTCCTCGTCCC
CAAAGCCACCAAGGACATGTCCCGCCTGCACCAAGGCTACGACCGTGGCTAGCTCCGGCTAGCTACTAGTACTTGCAGTA
TACCTTTTCTGTTTAGATCCTTCCCCGTTGTCAGTTGATAGTTTCTCACACCGATCAGCCATGAAGGAGGTGGGTCAGAA
GAAGAACATCCTGGCCAAGACGCTCCAGAAGTGCCGGTCGTTGGGCCACCGGAGGCAGCCGGCAGCCTACGGCGGTGGCG
G---------CAGCGCCAGTGCCCCGGCGTCGCCACGCGCGGCCGATGGCAGGGCGGCGGCGTGGGCCGTGCCGGCGGGG
TACTTCGCCGTGCTCGTGGGGCCGGAGAAGGAGCGGTTCGCGGTGCGCGCCAGGTGCGCGAACCACCCCCTGTTCCGGGC
GCTGCTGGACGAGGCCGAGACGGAGTACGGCTTCGCCGGCTGCGCCGGCCCGCTCGAGCTGCCCTGCGCCGTCGATGATT
TCATGGAGGTGATGTGGGAGATGGAGCAGGGGGGCGGCGTCGCGTCGTCGCCCAGCTGCGCTCGCTTCGCCGGCAGGGGC
CACCACCAACAACAACAGCGCCACGGGTACCACATGTTGAGTCCGGGCACGTTCCGGTTCCTCGTCGCCGGCCGATCGTG
ATCACCATGCACGTGCTTGCTCTTCGCCAACGACGGTCTAAGTC------------------------------CATCGT
TGTAATCTTCCTTTTCTTCCTCTTTTTCTTTACGTGTAGG--------TTGTTGATGTCGAATGCATGTAGAAGTTAATT
CTTCATCGCCTGTTTGATGGACTGCTAGCTTAGGGTGTTGATGTGATAATTTCATAAGTTGCCAACGTTTCTTGGTCCAT
CAGTTAGTGTGCATTTCGCGTGTTCTTCATGTGAAT---ATATGTATATGGTGCTCATTGTAAATGTAAACTATGGACAG
AAGATGCTTCCTTTTGTT--------------------------------------------------------------
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>chr7B_479
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------------------------------------------------------------------------------AT
TTTACGGCTCGCCCTAACTACTTCTCACCGCGTCTCAAGGGGCC--GAGAAGAAGAAGAAACTTTCAACCGCAGCCCTCC
G----CGTACGCATGCATATGTGCCATTCTTAGCTTGCTCTTAAT----CTGAACCTCTTCTTCTTGCTACCACCGCGAG
AAAGCAGCTGAGGCGCTCCCTTTCTCCTTTAAATT-------------------CCTGCGTCCCATTCTCCAAA---CCA
GCACCTCATACTCTTCGTCGCCTTCGTGACTTTGGTTCACTCTCGGGAGAAAC----TAACCATCACCTCATACTCCGCC
GATGCCTCCTTCGTCGCCTCTTGCGCCCGTCCACAAAGAAGTATGAACTACACCGGGAGCGCCCTCTCCCTCCTCGCGCC
AAAAGCCACCAAGGACATGTCCCGCCTGCACCAAGGCTACGACCGTGGCTAGCTCCA--TAGCTACTACCCCC-CGTAGT
AGTATA--CTGTTTCGATCCAGTCCCGTTGTCGGTAGGTAGTTTTCCACATCGATCAGCCATGAAGGAAGGGGGTCAGAA
GAAGAACATCCTGGCCAAGACGCTCCAGAAGTGCCGGTCGCTGGGCCACCGGAGGCAGCCGGCGGCCTACGGCGGTGGCG
GCGCTGGCAGCAGCGCCAGTGCCCCGGCGTCGCCACGCGCGGCCGATGGCAGGGTGGCGGCGTGGGCCGTGCCGGCGGGG
TACTTCGCCGTGCTCGTGGGGCCAGGCAAGGAGCGGTTCGCGGTGCGCGCCAGGTGCGCAAACCACCCCCTGTTCCGCGC
GCTGCTGGACGAGGCCGAGACGGAGTACGGCTTCGCCGGCTGCATCGGCCCGCTCGAGCTGCCCTGCGCCGTCGATGATT
TCATGGAGGTGATGTGGGAGATGGAGCAGGGGGGCGGTGTC---------------------------------------
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>chr7B_1370
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--------------------------------GGCGGCGTCGCGTCGTCGCCCAGCTGCGCTCGCTTCGCCGGCAGGGGG
CACCACCAACAACAACAGCGCCACGGGTACCACATGTTGAGTCCGGGCACGTTCG------TCCTCGCCGGCCGATCGTG
ATCACCATGCACGTGCTTGCTCTTCGCCAACGACGGTCTAAGTC---GACCGTGGTAAGAAACCTTCTGCGGTCCATCGT
TGTAATCTTCTTTTTCTTCCTCTTTTTCTTTACGTGTAAG--------TTGTTGATGTCGAATGCATGTAGAAGTTAATT
CTTCATCGCCTGCTTGATGGATTGCTAGCTTAGGGTGTTGATGTGATAAGTTCATAAGTTGCCAACGTTTCTTGGTCCAT
CAGTTAGTGTGCATTTCGCGTGTTCTCCATGTGAATCAGATATGTATATGGTGCTCAT------TGTAAACTATGGACAG
AAGATGCTTCTTTTTTGTTCTGGACGAAGTGGAAACGAGATCCACCTAAGAGCACTCCGGAACCGTGATCCAAATCTTTT
TCTGGGCAACTGTTTTGTGAACCTGTTATAGGCTAAGGATGCTCAGAGCGGGAGTAACATAAATAATAACATGCATGACT
CATAAGCACAAAATATAATGTGACAAGTAATGAAAAAAGATGCAAATAAAGTAACATAACATGTCACCATCACATAACGG
TCCTCAATATAAAATGATTCTATAAAGTAATAATCAAAGCTTTATATAAATATTTGCATGTTATTAATCTATAAGTTTTT
CTCACTATGCATGACAAGGTATAAACTATTCTCCAAGTCCAAACGATCCAACTCGTGAGTCACTTGCGCCCACAACCAGC
ACTAAAAAAAAAGCATTCAGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CAGTCCTAATTCGC-AAAAAATAAAAATGTGTCGTGACCCTAAGCCTGTGATGTCAACACACACAATTATTGTCATTATA
GTAAAAATACACAATATATAAATATAAGCATGACATAGGCTACCGTCCCAAAAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
------------S------------------------S-----SSS------S--S-----------------------S
--SSS---------------------------------------------------------------------------
----------------------------------S--S-----SSSSSS------S------------------------
-------------------------------S-----------S------------------------------------
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---------S---------------------------------------------------------------S----S-
--------------------------------S--------S--------------S-----------------------
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-------------------S--------S-----------------------------------------S---------
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---------------------------------------------------------------S--S-------------
----------S--------------------S------------------------------------------------
---------------------------------S----------------------------------------S-----
-------------------------S------------------SSS--------S-----------SS-------SS-S
-------------S-----------------S--S-----SSSSSSSS-------------------------S------
-------------------------S---------------S-------------------S------------------
-----------------------------------S-----------------S--------------------------
---------------------------------S------------------------------------S--S------
S-S----------------------S-------------------------S-S---------S------S------S--
S-------S-------S-------S----------------------S----------------S------------S-S
-SS----------------S------------------------------S--S-----------------SSSSS----
S-------------------------S------------------S----------------------------------
-----S----SSSSSS-SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----------------------------------------------------------------
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------------S-S----------------------S------------------------------------------
---------------------------S--------------------------
>forward_253
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-------------------------------------------------------------------------AGGATCT
TGGCTTTCACCCG-------------------------------------------------------------------
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>reverse_2269
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----------------------------AGCAACGCCAAGGCTAATCT--------------------------------
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