Multiple sequence alignment - TraesCS7D01G343900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G343900 chr7D 100.000 3292 0 0 1 3292 440280654 440283945 0.000000e+00 6080.0
1 TraesCS7D01G343900 chr7D 93.519 216 12 2 1 215 573556661 573556447 1.470000e-83 320.0
2 TraesCS7D01G343900 chr7B 93.904 2641 104 29 669 3292 458229805 458232405 0.000000e+00 3932.0
3 TraesCS7D01G343900 chr7B 93.284 134 9 0 540 673 458225622 458225755 7.210000e-47 198.0
4 TraesCS7D01G343900 chr7A 91.878 2401 111 36 691 3060 492086380 492088727 0.000000e+00 3277.0
5 TraesCS7D01G343900 chr2D 95.192 208 10 0 1 208 35979700 35979493 2.450000e-86 329.0
6 TraesCS7D01G343900 chr2D 93.023 215 13 2 1 214 44886640 44886853 2.470000e-81 313.0
7 TraesCS7D01G343900 chr2D 91.329 173 10 3 346 516 95517321 95517490 7.100000e-57 231.0
8 TraesCS7D01G343900 chr2D 92.121 165 9 2 353 516 362930808 362930969 2.560000e-56 230.0
9 TraesCS7D01G343900 chr2D 91.667 168 10 2 350 516 520539240 520539404 2.560000e-56 230.0
10 TraesCS7D01G343900 chr5A 94.712 208 11 0 1 208 3188038 3188245 1.140000e-84 324.0
11 TraesCS7D01G343900 chr5A 84.375 64 5 4 3034 3093 429905605 429905543 1.280000e-04 58.4
12 TraesCS7D01G343900 chr4D 93.925 214 12 1 1 213 481489366 481489579 4.100000e-84 322.0
13 TraesCS7D01G343900 chr4D 93.810 210 12 1 1 209 467816501 467816710 6.860000e-82 315.0
14 TraesCS7D01G343900 chr4D 88.261 230 26 1 3064 3292 300834880 300834651 1.160000e-69 274.0
15 TraesCS7D01G343900 chr4D 90.643 171 12 2 347 516 437295759 437295926 1.190000e-54 224.0
16 TraesCS7D01G343900 chr3D 94.258 209 11 1 1 208 106744563 106744355 5.300000e-83 318.0
17 TraesCS7D01G343900 chr3D 88.261 230 26 1 3063 3291 84024673 84024902 1.160000e-69 274.0
18 TraesCS7D01G343900 chr3D 88.210 229 26 1 3064 3291 491988941 491989169 4.190000e-69 272.0
19 TraesCS7D01G343900 chr1D 93.868 212 12 1 1 211 346621949 346621738 5.300000e-83 318.0
20 TraesCS7D01G343900 chr1D 93.458 214 12 2 1 213 455070403 455070615 1.910000e-82 316.0
21 TraesCS7D01G343900 chr1D 88.462 234 24 2 3059 3292 101947829 101948059 2.500000e-71 279.0
22 TraesCS7D01G343900 chr2B 89.130 230 23 2 3064 3292 102118861 102118633 5.380000e-73 285.0
23 TraesCS7D01G343900 chr2B 90.341 176 13 2 342 516 729188113 729187941 9.190000e-56 228.0
24 TraesCS7D01G343900 chr1B 88.646 229 26 0 3064 3292 269552462 269552234 2.500000e-71 279.0
25 TraesCS7D01G343900 chr1B 91.379 174 10 3 353 524 623195683 623195853 1.980000e-57 233.0
26 TraesCS7D01G343900 chr6D 88.646 229 23 3 3066 3292 276719016 276719243 3.240000e-70 276.0
27 TraesCS7D01G343900 chr6D 88.312 231 24 3 3064 3292 354211916 354212145 1.160000e-69 274.0
28 TraesCS7D01G343900 chr5B 91.667 168 10 2 350 516 78736486 78736650 2.560000e-56 230.0
29 TraesCS7D01G343900 chr4B 91.228 171 11 2 347 516 372049008 372048841 2.560000e-56 230.0
30 TraesCS7D01G343900 chr4A 92.121 165 9 2 353 516 517406471 517406632 2.560000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G343900 chr7D 440280654 440283945 3291 False 6080 6080 100.000 1 3292 1 chr7D.!!$F1 3291
1 TraesCS7D01G343900 chr7B 458229805 458232405 2600 False 3932 3932 93.904 669 3292 1 chr7B.!!$F2 2623
2 TraesCS7D01G343900 chr7A 492086380 492088727 2347 False 3277 3277 91.878 691 3060 1 chr7A.!!$F1 2369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 642 0.034896 AGCTTCACGATGGGAACGTT 59.965 50.0 0.0 0.0 42.07 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 2497 0.317479 AGTATGCCGCCCTCGTTATC 59.683 55.0 0.0 0.0 0.0 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.801997 CCAGGAGCGAGGCCCATT 61.802 66.667 0.00 0.00 0.00 3.16
23 24 2.515523 CAGGAGCGAGGCCCATTG 60.516 66.667 0.00 0.00 0.00 2.82
24 25 3.801997 AGGAGCGAGGCCCATTGG 61.802 66.667 0.00 0.00 0.00 3.16
25 26 4.115199 GGAGCGAGGCCCATTGGT 62.115 66.667 0.00 0.00 0.00 3.67
26 27 2.514824 GAGCGAGGCCCATTGGTC 60.515 66.667 0.00 0.00 36.05 4.02
27 28 4.115199 AGCGAGGCCCATTGGTCC 62.115 66.667 0.00 0.00 36.69 4.46
29 30 4.856801 CGAGGCCCATTGGTCCCG 62.857 72.222 0.00 0.00 36.69 5.14
30 31 4.506255 GAGGCCCATTGGTCCCGG 62.506 72.222 0.00 0.00 36.69 5.73
32 33 4.376170 GGCCCATTGGTCCCGGTT 62.376 66.667 0.00 0.00 0.00 4.44
33 34 2.754254 GCCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
34 35 2.437716 CCCATTGGTCCCGGTTCG 60.438 66.667 0.00 0.00 0.00 3.95
35 36 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
36 37 2.038269 CCATTGGTCCCGGTTCGTG 61.038 63.158 0.00 0.00 0.00 4.35
37 38 2.038269 CATTGGTCCCGGTTCGTGG 61.038 63.158 0.00 0.00 0.00 4.94
38 39 3.912745 ATTGGTCCCGGTTCGTGGC 62.913 63.158 0.00 0.00 0.00 5.01
41 42 4.309950 GTCCCGGTTCGTGGCTGT 62.310 66.667 0.00 0.00 0.00 4.40
42 43 2.601067 TCCCGGTTCGTGGCTGTA 60.601 61.111 0.00 0.00 0.00 2.74
43 44 2.208619 TCCCGGTTCGTGGCTGTAA 61.209 57.895 0.00 0.00 0.00 2.41
44 45 2.030958 CCCGGTTCGTGGCTGTAAC 61.031 63.158 0.00 0.00 0.00 2.50
45 46 2.030958 CCGGTTCGTGGCTGTAACC 61.031 63.158 0.00 0.00 39.44 2.85
46 47 3.557824 GGTTCGTGGCTGTAACCG 58.442 61.111 0.00 0.00 33.85 4.44
47 48 2.030958 GGTTCGTGGCTGTAACCGG 61.031 63.158 0.00 0.00 33.85 5.28
48 49 2.030958 GTTCGTGGCTGTAACCGGG 61.031 63.158 6.32 0.00 0.00 5.73
49 50 2.208619 TTCGTGGCTGTAACCGGGA 61.209 57.895 6.32 0.00 0.00 5.14
50 51 2.433664 CGTGGCTGTAACCGGGAC 60.434 66.667 6.32 3.72 0.00 4.46
51 52 2.745037 GTGGCTGTAACCGGGACA 59.255 61.111 6.32 9.01 0.00 4.02
52 53 1.071814 GTGGCTGTAACCGGGACAA 59.928 57.895 6.32 0.00 0.00 3.18
53 54 0.535553 GTGGCTGTAACCGGGACAAA 60.536 55.000 6.32 0.00 0.00 2.83
54 55 0.183014 TGGCTGTAACCGGGACAAAA 59.817 50.000 6.32 0.00 0.00 2.44
55 56 0.879090 GGCTGTAACCGGGACAAAAG 59.121 55.000 6.32 0.00 0.00 2.27
56 57 0.879090 GCTGTAACCGGGACAAAAGG 59.121 55.000 6.32 0.00 0.00 3.11
57 58 1.530323 CTGTAACCGGGACAAAAGGG 58.470 55.000 6.32 0.00 0.00 3.95
58 59 0.845337 TGTAACCGGGACAAAAGGGT 59.155 50.000 6.32 0.00 0.00 4.34
59 60 1.202794 TGTAACCGGGACAAAAGGGTC 60.203 52.381 6.32 0.00 37.06 4.46
67 68 2.249844 GACAAAAGGGTCCAGACGAA 57.750 50.000 0.00 0.00 0.00 3.85
68 69 1.871676 GACAAAAGGGTCCAGACGAAC 59.128 52.381 0.00 0.00 0.00 3.95
72 73 4.078516 GGGTCCAGACGAACCGGG 62.079 72.222 6.32 0.00 39.05 5.73
73 74 2.993264 GGTCCAGACGAACCGGGA 60.993 66.667 6.32 0.00 0.00 5.14
74 75 2.260743 GTCCAGACGAACCGGGAC 59.739 66.667 6.32 9.54 42.60 4.46
75 76 2.993264 TCCAGACGAACCGGGACC 60.993 66.667 6.32 0.00 0.00 4.46
76 77 3.307906 CCAGACGAACCGGGACCA 61.308 66.667 6.32 0.00 0.00 4.02
77 78 2.738480 CAGACGAACCGGGACCAA 59.262 61.111 6.32 0.00 0.00 3.67
78 79 1.295423 CAGACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 0.00 3.16
79 80 1.019278 CAGACGAACCGGGACCAATG 61.019 60.000 6.32 0.00 0.00 2.82
80 81 2.359478 ACGAACCGGGACCAATGC 60.359 61.111 6.32 0.00 0.00 3.56
81 82 3.131478 CGAACCGGGACCAATGCC 61.131 66.667 6.32 0.00 0.00 4.40
82 83 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
83 84 4.376170 AACCGGGACCAATGCCCC 62.376 66.667 6.32 0.00 42.92 5.80
87 88 4.041762 GGGACCAATGCCCCACGA 62.042 66.667 4.42 0.00 42.24 4.35
88 89 2.438434 GGACCAATGCCCCACGAG 60.438 66.667 0.00 0.00 0.00 4.18
89 90 2.438434 GACCAATGCCCCACGAGG 60.438 66.667 0.00 0.00 0.00 4.63
116 117 4.410400 CCCCCTGGGCTCACGAAC 62.410 72.222 7.39 0.00 35.35 3.95
117 118 3.322466 CCCCTGGGCTCACGAACT 61.322 66.667 7.39 0.00 0.00 3.01
118 119 2.046892 CCCTGGGCTCACGAACTG 60.047 66.667 0.00 0.00 0.00 3.16
119 120 2.046892 CCTGGGCTCACGAACTGG 60.047 66.667 0.00 0.00 0.00 4.00
120 121 2.046892 CTGGGCTCACGAACTGGG 60.047 66.667 0.00 0.00 0.00 4.45
121 122 2.525629 TGGGCTCACGAACTGGGA 60.526 61.111 0.00 0.00 0.00 4.37
122 123 2.047179 GGGCTCACGAACTGGGAC 60.047 66.667 0.00 0.00 0.00 4.46
123 124 2.432628 GGCTCACGAACTGGGACG 60.433 66.667 0.00 0.00 0.00 4.79
124 125 2.338984 GCTCACGAACTGGGACGT 59.661 61.111 0.00 0.00 43.50 4.34
125 126 1.582968 GCTCACGAACTGGGACGTA 59.417 57.895 0.00 0.00 40.76 3.57
126 127 0.172803 GCTCACGAACTGGGACGTAT 59.827 55.000 0.00 0.00 40.76 3.06
127 128 1.909376 CTCACGAACTGGGACGTATG 58.091 55.000 0.00 0.00 40.76 2.39
128 129 0.108992 TCACGAACTGGGACGTATGC 60.109 55.000 0.00 0.00 40.76 3.14
129 130 1.082117 CACGAACTGGGACGTATGCC 61.082 60.000 0.00 0.00 40.76 4.40
130 131 1.520787 CGAACTGGGACGTATGCCC 60.521 63.158 3.83 3.83 46.22 5.36
131 132 1.153229 GAACTGGGACGTATGCCCC 60.153 63.158 8.26 5.74 45.40 5.80
135 136 2.113139 GGGACGTATGCCCCATGG 59.887 66.667 4.14 4.14 42.24 3.66
137 138 2.752807 GGACGTATGCCCCATGGGT 61.753 63.158 29.33 13.87 46.51 4.51
138 139 1.227853 GACGTATGCCCCATGGGTC 60.228 63.158 29.33 18.61 46.51 4.46
139 140 2.113139 CGTATGCCCCATGGGTCC 59.887 66.667 29.33 19.48 46.51 4.46
140 141 2.520968 GTATGCCCCATGGGTCCC 59.479 66.667 29.33 16.98 46.51 4.46
141 142 3.174987 TATGCCCCATGGGTCCCG 61.175 66.667 29.33 14.98 46.51 5.14
145 146 4.123545 CCCCATGGGTCCCGGTTC 62.124 72.222 29.33 0.00 38.25 3.62
146 147 3.334891 CCCATGGGTCCCGGTTCA 61.335 66.667 23.93 0.00 0.00 3.18
147 148 2.689691 CCCATGGGTCCCGGTTCAT 61.690 63.158 23.93 0.00 0.00 2.57
148 149 1.453745 CCATGGGTCCCGGTTCATG 60.454 63.158 2.85 8.47 37.37 3.07
149 150 1.607071 CATGGGTCCCGGTTCATGA 59.393 57.895 14.43 0.00 39.27 3.07
150 151 0.748005 CATGGGTCCCGGTTCATGAC 60.748 60.000 14.43 8.13 39.27 3.06
151 152 0.914417 ATGGGTCCCGGTTCATGACT 60.914 55.000 2.65 0.00 0.00 3.41
152 153 1.078426 GGGTCCCGGTTCATGACTG 60.078 63.158 0.00 0.00 0.00 3.51
153 154 1.550130 GGGTCCCGGTTCATGACTGA 61.550 60.000 0.00 0.00 36.72 3.41
154 155 0.323629 GGTCCCGGTTCATGACTGAA 59.676 55.000 0.00 0.00 39.07 3.02
164 165 4.610605 TTCATGACTGAACCGGAACTAA 57.389 40.909 9.46 0.00 36.46 2.24
165 166 4.819105 TCATGACTGAACCGGAACTAAT 57.181 40.909 9.46 0.00 0.00 1.73
166 167 4.503910 TCATGACTGAACCGGAACTAATG 58.496 43.478 9.46 3.20 0.00 1.90
167 168 4.221924 TCATGACTGAACCGGAACTAATGA 59.778 41.667 9.46 5.70 0.00 2.57
168 169 4.188247 TGACTGAACCGGAACTAATGAG 57.812 45.455 9.46 0.00 0.00 2.90
169 170 2.930682 GACTGAACCGGAACTAATGAGC 59.069 50.000 9.46 0.00 0.00 4.26
170 171 2.567615 ACTGAACCGGAACTAATGAGCT 59.432 45.455 9.46 0.00 0.00 4.09
171 172 2.932614 CTGAACCGGAACTAATGAGCTG 59.067 50.000 9.46 0.00 0.00 4.24
172 173 2.280628 GAACCGGAACTAATGAGCTGG 58.719 52.381 9.46 0.00 0.00 4.85
173 174 0.107654 ACCGGAACTAATGAGCTGGC 60.108 55.000 9.46 0.00 0.00 4.85
174 175 0.815615 CCGGAACTAATGAGCTGGCC 60.816 60.000 0.00 0.00 0.00 5.36
175 176 0.107703 CGGAACTAATGAGCTGGCCA 60.108 55.000 4.71 4.71 0.00 5.36
176 177 1.673168 GGAACTAATGAGCTGGCCAG 58.327 55.000 29.34 29.34 0.00 4.85
177 178 1.673168 GAACTAATGAGCTGGCCAGG 58.327 55.000 33.46 17.36 0.00 4.45
178 179 0.394899 AACTAATGAGCTGGCCAGGC 60.395 55.000 33.46 24.33 0.00 4.85
191 192 2.677875 CAGGCCTGGACCAAAGCC 60.678 66.667 26.14 22.45 46.13 4.35
193 194 3.984732 GGCCTGGACCAAAGCCCT 61.985 66.667 20.24 0.00 39.60 5.19
194 195 2.677875 GCCTGGACCAAAGCCCTG 60.678 66.667 0.00 0.00 0.00 4.45
195 196 2.846532 CCTGGACCAAAGCCCTGT 59.153 61.111 0.00 0.00 0.00 4.00
196 197 1.153756 CCTGGACCAAAGCCCTGTT 59.846 57.895 0.00 0.00 0.00 3.16
197 198 0.469892 CCTGGACCAAAGCCCTGTTT 60.470 55.000 0.00 0.00 0.00 2.83
198 199 1.413118 CTGGACCAAAGCCCTGTTTT 58.587 50.000 0.00 0.00 0.00 2.43
199 200 1.341209 CTGGACCAAAGCCCTGTTTTC 59.659 52.381 0.00 0.00 0.00 2.29
200 201 1.063266 TGGACCAAAGCCCTGTTTTCT 60.063 47.619 0.00 0.00 0.00 2.52
201 202 2.175931 TGGACCAAAGCCCTGTTTTCTA 59.824 45.455 0.00 0.00 0.00 2.10
202 203 2.557056 GGACCAAAGCCCTGTTTTCTAC 59.443 50.000 0.00 0.00 0.00 2.59
203 204 3.487372 GACCAAAGCCCTGTTTTCTACT 58.513 45.455 0.00 0.00 0.00 2.57
204 205 4.506095 GGACCAAAGCCCTGTTTTCTACTA 60.506 45.833 0.00 0.00 0.00 1.82
205 206 4.652822 ACCAAAGCCCTGTTTTCTACTAG 58.347 43.478 0.00 0.00 0.00 2.57
206 207 4.104261 ACCAAAGCCCTGTTTTCTACTAGT 59.896 41.667 0.00 0.00 0.00 2.57
207 208 4.455877 CCAAAGCCCTGTTTTCTACTAGTG 59.544 45.833 5.39 0.00 0.00 2.74
208 209 5.305585 CAAAGCCCTGTTTTCTACTAGTGA 58.694 41.667 5.39 0.00 0.00 3.41
209 210 5.763876 AAGCCCTGTTTTCTACTAGTGAT 57.236 39.130 5.39 0.00 0.00 3.06
210 211 6.869206 AAGCCCTGTTTTCTACTAGTGATA 57.131 37.500 5.39 0.00 0.00 2.15
211 212 7.439108 AAGCCCTGTTTTCTACTAGTGATAT 57.561 36.000 5.39 0.00 0.00 1.63
212 213 8.548880 AAGCCCTGTTTTCTACTAGTGATATA 57.451 34.615 5.39 0.00 0.00 0.86
213 214 8.728596 AGCCCTGTTTTCTACTAGTGATATAT 57.271 34.615 5.39 0.00 0.00 0.86
214 215 8.589338 AGCCCTGTTTTCTACTAGTGATATATG 58.411 37.037 5.39 0.00 0.00 1.78
215 216 7.819900 GCCCTGTTTTCTACTAGTGATATATGG 59.180 40.741 5.39 0.00 0.00 2.74
216 217 7.819900 CCCTGTTTTCTACTAGTGATATATGGC 59.180 40.741 5.39 0.00 0.00 4.40
217 218 7.819900 CCTGTTTTCTACTAGTGATATATGGCC 59.180 40.741 5.39 0.00 0.00 5.36
218 219 7.676947 TGTTTTCTACTAGTGATATATGGCCC 58.323 38.462 5.39 0.00 0.00 5.80
219 220 6.869206 TTTCTACTAGTGATATATGGCCCC 57.131 41.667 5.39 0.00 0.00 5.80
220 221 4.880164 TCTACTAGTGATATATGGCCCCC 58.120 47.826 5.39 0.00 0.00 5.40
251 252 6.840780 TTTTCCCATCTCTGATTTTCTTCC 57.159 37.500 0.00 0.00 0.00 3.46
252 253 5.519183 TTCCCATCTCTGATTTTCTTCCA 57.481 39.130 0.00 0.00 0.00 3.53
253 254 5.519183 TCCCATCTCTGATTTTCTTCCAA 57.481 39.130 0.00 0.00 0.00 3.53
254 255 5.891198 TCCCATCTCTGATTTTCTTCCAAA 58.109 37.500 0.00 0.00 0.00 3.28
255 256 6.496743 TCCCATCTCTGATTTTCTTCCAAAT 58.503 36.000 0.00 0.00 0.00 2.32
256 257 7.642186 TCCCATCTCTGATTTTCTTCCAAATA 58.358 34.615 0.00 0.00 0.00 1.40
257 258 7.776969 TCCCATCTCTGATTTTCTTCCAAATAG 59.223 37.037 0.00 0.00 0.00 1.73
258 259 7.776969 CCCATCTCTGATTTTCTTCCAAATAGA 59.223 37.037 0.00 0.00 0.00 1.98
259 260 9.182214 CCATCTCTGATTTTCTTCCAAATAGAA 57.818 33.333 0.00 0.00 0.00 2.10
321 322 9.846248 AGTGCTTAACATTAAGATGACATTTTC 57.154 29.630 14.27 0.00 42.05 2.29
322 323 9.076596 GTGCTTAACATTAAGATGACATTTTCC 57.923 33.333 14.27 0.00 42.05 3.13
323 324 8.250332 TGCTTAACATTAAGATGACATTTTCCC 58.750 33.333 14.27 0.00 42.05 3.97
324 325 8.470002 GCTTAACATTAAGATGACATTTTCCCT 58.530 33.333 14.27 0.00 42.05 4.20
326 327 7.410120 AACATTAAGATGACATTTTCCCTCC 57.590 36.000 0.00 0.00 36.73 4.30
327 328 5.893824 ACATTAAGATGACATTTTCCCTCCC 59.106 40.000 0.00 0.00 36.73 4.30
328 329 5.528600 TTAAGATGACATTTTCCCTCCCA 57.471 39.130 0.00 0.00 0.00 4.37
329 330 4.614967 AAGATGACATTTTCCCTCCCAT 57.385 40.909 0.00 0.00 0.00 4.00
330 331 4.176120 AGATGACATTTTCCCTCCCATC 57.824 45.455 0.00 0.00 0.00 3.51
331 332 3.790408 AGATGACATTTTCCCTCCCATCT 59.210 43.478 0.00 0.00 35.72 2.90
332 333 3.652057 TGACATTTTCCCTCCCATCTC 57.348 47.619 0.00 0.00 0.00 2.75
333 334 2.242196 TGACATTTTCCCTCCCATCTCC 59.758 50.000 0.00 0.00 0.00 3.71
334 335 2.242196 GACATTTTCCCTCCCATCTCCA 59.758 50.000 0.00 0.00 0.00 3.86
335 336 2.654385 ACATTTTCCCTCCCATCTCCAA 59.346 45.455 0.00 0.00 0.00 3.53
336 337 3.273084 ACATTTTCCCTCCCATCTCCAAT 59.727 43.478 0.00 0.00 0.00 3.16
337 338 4.482025 ACATTTTCCCTCCCATCTCCAATA 59.518 41.667 0.00 0.00 0.00 1.90
338 339 5.136737 ACATTTTCCCTCCCATCTCCAATAT 59.863 40.000 0.00 0.00 0.00 1.28
339 340 5.749422 TTTTCCCTCCCATCTCCAATATT 57.251 39.130 0.00 0.00 0.00 1.28
340 341 5.749422 TTTCCCTCCCATCTCCAATATTT 57.251 39.130 0.00 0.00 0.00 1.40
341 342 5.324832 TTCCCTCCCATCTCCAATATTTC 57.675 43.478 0.00 0.00 0.00 2.17
342 343 4.581233 TCCCTCCCATCTCCAATATTTCT 58.419 43.478 0.00 0.00 0.00 2.52
343 344 4.984268 TCCCTCCCATCTCCAATATTTCTT 59.016 41.667 0.00 0.00 0.00 2.52
344 345 5.073691 TCCCTCCCATCTCCAATATTTCTTC 59.926 44.000 0.00 0.00 0.00 2.87
345 346 5.320277 CCTCCCATCTCCAATATTTCTTCC 58.680 45.833 0.00 0.00 0.00 3.46
346 347 5.163055 CCTCCCATCTCCAATATTTCTTCCA 60.163 44.000 0.00 0.00 0.00 3.53
347 348 6.339999 TCCCATCTCCAATATTTCTTCCAA 57.660 37.500 0.00 0.00 0.00 3.53
348 349 6.740693 TCCCATCTCCAATATTTCTTCCAAA 58.259 36.000 0.00 0.00 0.00 3.28
349 350 7.364627 TCCCATCTCCAATATTTCTTCCAAAT 58.635 34.615 0.00 0.00 0.00 2.32
350 351 8.510283 TCCCATCTCCAATATTTCTTCCAAATA 58.490 33.333 0.00 0.00 0.00 1.40
351 352 9.146586 CCCATCTCCAATATTTCTTCCAAATAA 57.853 33.333 0.00 0.00 0.00 1.40
362 363 7.859325 TTTCTTCCAAATAATACTTCCTCCG 57.141 36.000 0.00 0.00 0.00 4.63
363 364 6.555463 TCTTCCAAATAATACTTCCTCCGT 57.445 37.500 0.00 0.00 0.00 4.69
364 365 6.954232 TCTTCCAAATAATACTTCCTCCGTT 58.046 36.000 0.00 0.00 0.00 4.44
365 366 7.046033 TCTTCCAAATAATACTTCCTCCGTTC 58.954 38.462 0.00 0.00 0.00 3.95
366 367 5.677567 TCCAAATAATACTTCCTCCGTTCC 58.322 41.667 0.00 0.00 0.00 3.62
367 368 5.427481 TCCAAATAATACTTCCTCCGTTCCT 59.573 40.000 0.00 0.00 0.00 3.36
368 369 6.612456 TCCAAATAATACTTCCTCCGTTCCTA 59.388 38.462 0.00 0.00 0.00 2.94
369 370 7.126115 TCCAAATAATACTTCCTCCGTTCCTAA 59.874 37.037 0.00 0.00 0.00 2.69
370 371 7.771826 CCAAATAATACTTCCTCCGTTCCTAAA 59.228 37.037 0.00 0.00 0.00 1.85
371 372 9.338622 CAAATAATACTTCCTCCGTTCCTAAAT 57.661 33.333 0.00 0.00 0.00 1.40
377 378 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
378 379 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
379 380 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
380 381 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
381 382 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
382 383 8.765517 TCCTCCGTTCCTAAATATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
383 384 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
409 410 8.873215 AAAGATTCCACTATGAACTACATACG 57.127 34.615 0.00 0.00 40.07 3.06
410 411 6.982852 AGATTCCACTATGAACTACATACGG 58.017 40.000 0.00 0.00 40.07 4.02
411 412 6.776116 AGATTCCACTATGAACTACATACGGA 59.224 38.462 0.00 0.00 40.07 4.69
412 413 6.387041 TTCCACTATGAACTACATACGGAG 57.613 41.667 0.00 0.00 38.29 4.63
413 414 4.277672 TCCACTATGAACTACATACGGAGC 59.722 45.833 0.00 0.00 40.07 4.70
414 415 4.037565 CCACTATGAACTACATACGGAGCA 59.962 45.833 0.00 0.00 40.07 4.26
415 416 5.451381 CCACTATGAACTACATACGGAGCAA 60.451 44.000 0.00 0.00 40.07 3.91
416 417 6.040247 CACTATGAACTACATACGGAGCAAA 58.960 40.000 0.00 0.00 40.07 3.68
417 418 6.533723 CACTATGAACTACATACGGAGCAAAA 59.466 38.462 0.00 0.00 40.07 2.44
418 419 7.224753 CACTATGAACTACATACGGAGCAAAAT 59.775 37.037 0.00 0.00 40.07 1.82
419 420 5.794687 TGAACTACATACGGAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
420 421 5.483811 TGAACTACATACGGAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
421 422 5.580691 TGAACTACATACGGAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
422 423 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
423 424 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
424 425 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
425 426 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
426 427 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
427 428 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
428 429 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
429 430 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
430 431 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
431 432 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
432 433 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
444 445 7.813852 AGTGAATCTACACTCAAAATACGTC 57.186 36.000 0.00 0.00 46.36 4.34
445 446 7.603651 AGTGAATCTACACTCAAAATACGTCT 58.396 34.615 0.00 0.00 46.36 4.18
446 447 8.737175 AGTGAATCTACACTCAAAATACGTCTA 58.263 33.333 0.00 0.00 46.36 2.59
447 448 8.796278 GTGAATCTACACTCAAAATACGTCTAC 58.204 37.037 0.00 0.00 37.73 2.59
448 449 7.695201 TGAATCTACACTCAAAATACGTCTACG 59.305 37.037 0.00 0.04 46.33 3.51
475 476 8.365399 ACATCCATATGTACTCGTTTGTAATG 57.635 34.615 1.24 0.00 44.66 1.90
476 477 7.441157 ACATCCATATGTACTCGTTTGTAATGG 59.559 37.037 1.24 0.00 44.66 3.16
477 478 7.114866 TCCATATGTACTCGTTTGTAATGGA 57.885 36.000 1.24 0.00 36.11 3.41
478 479 7.557724 TCCATATGTACTCGTTTGTAATGGAA 58.442 34.615 1.24 0.00 35.81 3.53
479 480 8.208224 TCCATATGTACTCGTTTGTAATGGAAT 58.792 33.333 1.24 0.00 35.81 3.01
480 481 8.495949 CCATATGTACTCGTTTGTAATGGAATC 58.504 37.037 1.24 0.00 33.45 2.52
481 482 9.261180 CATATGTACTCGTTTGTAATGGAATCT 57.739 33.333 0.00 0.00 0.00 2.40
482 483 7.772332 ATGTACTCGTTTGTAATGGAATCTC 57.228 36.000 0.00 0.00 0.00 2.75
483 484 6.931838 TGTACTCGTTTGTAATGGAATCTCT 58.068 36.000 0.00 0.00 0.00 3.10
484 485 8.058667 TGTACTCGTTTGTAATGGAATCTCTA 57.941 34.615 0.00 0.00 0.00 2.43
485 486 8.525316 TGTACTCGTTTGTAATGGAATCTCTAA 58.475 33.333 0.00 0.00 0.00 2.10
486 487 9.362539 GTACTCGTTTGTAATGGAATCTCTAAA 57.637 33.333 0.00 0.00 0.00 1.85
487 488 8.842358 ACTCGTTTGTAATGGAATCTCTAAAA 57.158 30.769 0.00 0.00 0.00 1.52
488 489 9.280174 ACTCGTTTGTAATGGAATCTCTAAAAA 57.720 29.630 0.00 0.00 0.00 1.94
489 490 9.760660 CTCGTTTGTAATGGAATCTCTAAAAAG 57.239 33.333 0.00 0.00 0.00 2.27
490 491 9.496873 TCGTTTGTAATGGAATCTCTAAAAAGA 57.503 29.630 0.00 0.00 0.00 2.52
491 492 9.543018 CGTTTGTAATGGAATCTCTAAAAAGAC 57.457 33.333 0.00 0.00 0.00 3.01
510 511 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
511 512 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
512 513 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
513 514 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
514 515 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
515 516 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
516 517 7.786464 ACTTATATTTAGGAACGGAGGGAGTAA 59.214 37.037 0.00 0.00 0.00 2.24
517 518 8.731591 TTATATTTAGGAACGGAGGGAGTAAT 57.268 34.615 0.00 0.00 0.00 1.89
518 519 5.970501 ATTTAGGAACGGAGGGAGTAATT 57.029 39.130 0.00 0.00 0.00 1.40
519 520 5.767277 TTTAGGAACGGAGGGAGTAATTT 57.233 39.130 0.00 0.00 0.00 1.82
520 521 5.767277 TTAGGAACGGAGGGAGTAATTTT 57.233 39.130 0.00 0.00 0.00 1.82
521 522 4.652679 AGGAACGGAGGGAGTAATTTTT 57.347 40.909 0.00 0.00 0.00 1.94
548 549 9.029368 TGGTGAGTCAATATATTCTCATCTAGG 57.971 37.037 20.10 0.18 38.43 3.02
549 550 9.030452 GGTGAGTCAATATATTCTCATCTAGGT 57.970 37.037 15.95 0.00 38.80 3.08
560 561 9.965902 ATATTCTCATCTAGGTTTTGTTGAGTT 57.034 29.630 0.00 0.00 33.89 3.01
562 563 8.603242 TTCTCATCTAGGTTTTGTTGAGTTAC 57.397 34.615 0.00 0.00 33.89 2.50
563 564 7.732025 TCTCATCTAGGTTTTGTTGAGTTACA 58.268 34.615 0.00 0.00 33.89 2.41
564 565 8.208224 TCTCATCTAGGTTTTGTTGAGTTACAA 58.792 33.333 0.00 0.00 36.30 2.41
565 566 8.740123 TCATCTAGGTTTTGTTGAGTTACAAA 57.260 30.769 0.00 0.00 44.01 2.83
590 591 8.707938 AAGAAAAATATATGCTTTGTTGAGGC 57.292 30.769 3.47 0.00 0.00 4.70
591 592 8.071177 AGAAAAATATATGCTTTGTTGAGGCT 57.929 30.769 0.00 0.00 0.00 4.58
592 593 8.193438 AGAAAAATATATGCTTTGTTGAGGCTC 58.807 33.333 7.79 7.79 0.00 4.70
593 594 7.408756 AAAATATATGCTTTGTTGAGGCTCA 57.591 32.000 14.43 14.43 0.00 4.26
594 595 7.408756 AAATATATGCTTTGTTGAGGCTCAA 57.591 32.000 25.38 25.38 33.32 3.02
606 607 3.421567 GGCTCAACCTCCAAACAGT 57.578 52.632 0.00 0.00 34.51 3.55
607 608 0.954452 GGCTCAACCTCCAAACAGTG 59.046 55.000 0.00 0.00 34.51 3.66
608 609 1.680338 GCTCAACCTCCAAACAGTGT 58.320 50.000 0.00 0.00 0.00 3.55
609 610 1.604278 GCTCAACCTCCAAACAGTGTC 59.396 52.381 0.00 0.00 0.00 3.67
610 611 2.222027 CTCAACCTCCAAACAGTGTCC 58.778 52.381 0.00 0.00 0.00 4.02
611 612 0.944386 CAACCTCCAAACAGTGTCCG 59.056 55.000 0.00 0.00 0.00 4.79
612 613 0.818040 AACCTCCAAACAGTGTCCGC 60.818 55.000 0.00 0.00 0.00 5.54
613 614 1.227823 CCTCCAAACAGTGTCCGCA 60.228 57.895 0.00 0.00 0.00 5.69
614 615 0.606401 CCTCCAAACAGTGTCCGCAT 60.606 55.000 0.00 0.00 0.00 4.73
615 616 0.798776 CTCCAAACAGTGTCCGCATC 59.201 55.000 0.00 0.00 0.00 3.91
616 617 0.107643 TCCAAACAGTGTCCGCATCA 59.892 50.000 0.00 0.00 0.00 3.07
617 618 0.238289 CCAAACAGTGTCCGCATCAC 59.762 55.000 0.00 0.00 36.22 3.06
618 619 0.238289 CAAACAGTGTCCGCATCACC 59.762 55.000 0.00 0.00 36.58 4.02
619 620 0.108585 AAACAGTGTCCGCATCACCT 59.891 50.000 0.00 0.00 36.58 4.00
620 621 0.320771 AACAGTGTCCGCATCACCTC 60.321 55.000 0.00 0.00 36.58 3.85
621 622 1.807165 CAGTGTCCGCATCACCTCG 60.807 63.158 0.00 0.00 36.58 4.63
622 623 1.977009 AGTGTCCGCATCACCTCGA 60.977 57.895 0.00 0.00 36.58 4.04
623 624 1.517257 GTGTCCGCATCACCTCGAG 60.517 63.158 5.13 5.13 0.00 4.04
624 625 2.583593 GTCCGCATCACCTCGAGC 60.584 66.667 6.99 0.00 0.00 5.03
625 626 2.755876 TCCGCATCACCTCGAGCT 60.756 61.111 6.99 0.00 0.00 4.09
626 627 2.185350 CCGCATCACCTCGAGCTT 59.815 61.111 6.99 0.00 0.00 3.74
627 628 1.880340 CCGCATCACCTCGAGCTTC 60.880 63.158 6.99 0.00 0.00 3.86
628 629 1.153765 CGCATCACCTCGAGCTTCA 60.154 57.895 6.99 0.00 0.00 3.02
629 630 1.416813 CGCATCACCTCGAGCTTCAC 61.417 60.000 6.99 0.00 0.00 3.18
630 631 1.416813 GCATCACCTCGAGCTTCACG 61.417 60.000 6.99 0.00 0.00 4.35
631 632 0.171231 CATCACCTCGAGCTTCACGA 59.829 55.000 6.99 0.00 38.11 4.35
632 633 1.107114 ATCACCTCGAGCTTCACGAT 58.893 50.000 6.99 0.00 39.02 3.73
633 634 0.171231 TCACCTCGAGCTTCACGATG 59.829 55.000 6.99 0.00 39.02 3.84
634 635 0.803768 CACCTCGAGCTTCACGATGG 60.804 60.000 6.99 3.96 39.02 3.51
635 636 1.227089 CCTCGAGCTTCACGATGGG 60.227 63.158 6.99 0.00 39.02 4.00
636 637 1.667154 CCTCGAGCTTCACGATGGGA 61.667 60.000 6.99 0.00 39.02 4.37
637 638 0.173481 CTCGAGCTTCACGATGGGAA 59.827 55.000 0.00 0.00 39.02 3.97
638 639 0.108804 TCGAGCTTCACGATGGGAAC 60.109 55.000 0.00 0.00 34.85 3.62
639 640 1.413767 CGAGCTTCACGATGGGAACG 61.414 60.000 0.00 0.00 0.00 3.95
640 641 0.389948 GAGCTTCACGATGGGAACGT 60.390 55.000 0.00 0.00 44.83 3.99
641 642 0.034896 AGCTTCACGATGGGAACGTT 59.965 50.000 0.00 0.00 42.07 3.99
642 643 0.165944 GCTTCACGATGGGAACGTTG 59.834 55.000 5.00 0.00 42.07 4.10
643 644 0.165944 CTTCACGATGGGAACGTTGC 59.834 55.000 11.85 11.85 42.07 4.17
644 645 0.533085 TTCACGATGGGAACGTTGCA 60.533 50.000 21.74 8.16 42.07 4.08
645 646 1.206578 CACGATGGGAACGTTGCAC 59.793 57.895 21.74 11.23 42.07 4.57
646 647 1.964373 ACGATGGGAACGTTGCACC 60.964 57.895 21.74 13.40 41.18 5.01
647 648 1.963855 CGATGGGAACGTTGCACCA 60.964 57.895 21.74 18.35 37.41 4.17
648 649 1.305219 CGATGGGAACGTTGCACCAT 61.305 55.000 21.74 21.83 45.87 3.55
649 650 0.171007 GATGGGAACGTTGCACCATG 59.829 55.000 25.01 0.00 43.40 3.66
650 651 1.250154 ATGGGAACGTTGCACCATGG 61.250 55.000 21.74 11.19 41.88 3.66
651 652 1.602323 GGGAACGTTGCACCATGGA 60.602 57.895 21.47 0.00 0.00 3.41
652 653 1.579429 GGAACGTTGCACCATGGAC 59.421 57.895 21.47 10.82 0.00 4.02
653 654 1.579429 GAACGTTGCACCATGGACC 59.421 57.895 21.47 9.15 0.00 4.46
654 655 1.152860 AACGTTGCACCATGGACCA 60.153 52.632 21.47 11.93 0.00 4.02
655 656 0.753479 AACGTTGCACCATGGACCAA 60.753 50.000 21.47 17.31 0.00 3.67
656 657 1.285641 CGTTGCACCATGGACCAAC 59.714 57.895 27.41 27.41 35.45 3.77
657 658 1.451337 CGTTGCACCATGGACCAACA 61.451 55.000 31.71 17.38 37.90 3.33
658 659 0.314935 GTTGCACCATGGACCAACAG 59.685 55.000 29.91 11.68 37.93 3.16
659 660 0.184692 TTGCACCATGGACCAACAGA 59.815 50.000 21.47 0.00 0.00 3.41
660 661 0.405198 TGCACCATGGACCAACAGAT 59.595 50.000 21.47 0.00 0.00 2.90
661 662 1.203038 TGCACCATGGACCAACAGATT 60.203 47.619 21.47 0.00 0.00 2.40
662 663 1.203052 GCACCATGGACCAACAGATTG 59.797 52.381 21.47 2.70 35.40 2.67
663 664 2.794103 CACCATGGACCAACAGATTGA 58.206 47.619 21.47 0.00 38.15 2.57
664 665 2.751259 CACCATGGACCAACAGATTGAG 59.249 50.000 21.47 0.00 38.15 3.02
665 666 2.291153 ACCATGGACCAACAGATTGAGG 60.291 50.000 21.47 0.00 38.15 3.86
666 667 2.372264 CATGGACCAACAGATTGAGGG 58.628 52.381 0.00 0.00 38.15 4.30
667 668 1.444933 TGGACCAACAGATTGAGGGT 58.555 50.000 0.00 0.00 38.15 4.34
682 683 0.109913 AGGGTGTTTCCGAACTTCCC 59.890 55.000 11.94 11.94 43.83 3.97
683 684 0.179012 GGGTGTTTCCGAACTTCCCA 60.179 55.000 13.75 0.00 43.42 4.37
684 685 1.546998 GGGTGTTTCCGAACTTCCCAT 60.547 52.381 13.75 0.00 43.42 4.00
688 689 3.316868 GTGTTTCCGAACTTCCCATCAAA 59.683 43.478 0.00 0.00 36.70 2.69
699 700 7.801783 CGAACTTCCCATCAAACTAAAAACTAC 59.198 37.037 0.00 0.00 0.00 2.73
839 840 0.322366 AGCAAAAGCTCAGAGGCTCC 60.322 55.000 11.71 0.00 42.24 4.70
840 841 0.322366 GCAAAAGCTCAGAGGCTCCT 60.322 55.000 11.71 0.00 42.24 3.69
841 842 1.736612 CAAAAGCTCAGAGGCTCCTC 58.263 55.000 11.71 7.84 42.24 3.71
885 888 1.225855 CCACAAGCGAGCTAACAACA 58.774 50.000 0.00 0.00 0.00 3.33
909 912 5.635120 ACCACTCTTTAGCTTTTTCTCCAT 58.365 37.500 0.00 0.00 0.00 3.41
910 913 6.071320 ACCACTCTTTAGCTTTTTCTCCATT 58.929 36.000 0.00 0.00 0.00 3.16
911 914 6.015940 ACCACTCTTTAGCTTTTTCTCCATTG 60.016 38.462 0.00 0.00 0.00 2.82
940 945 3.505293 AGGCAAAGAAAGAAGCTAAGCTG 59.495 43.478 0.00 0.00 39.62 4.24
941 946 3.503748 GGCAAAGAAAGAAGCTAAGCTGA 59.496 43.478 0.00 0.00 39.62 4.26
942 947 4.379290 GGCAAAGAAAGAAGCTAAGCTGAG 60.379 45.833 0.00 0.00 39.62 3.35
943 948 4.721142 CAAAGAAAGAAGCTAAGCTGAGC 58.279 43.478 16.05 16.05 39.62 4.26
959 964 3.861886 GCTGAGCTCTCATATCCTTGCTC 60.862 52.174 16.19 0.00 44.77 4.26
1540 1545 3.647649 ATGAGCTGCTGCGCGTACA 62.648 57.895 7.01 3.56 45.42 2.90
1829 1834 3.768922 AGGTGCGCTCTCTCTGCC 61.769 66.667 9.73 0.00 0.00 4.85
1830 1835 3.768922 GGTGCGCTCTCTCTGCCT 61.769 66.667 9.73 0.00 0.00 4.75
1831 1836 2.202730 GTGCGCTCTCTCTGCCTC 60.203 66.667 9.73 0.00 0.00 4.70
1832 1837 2.362247 TGCGCTCTCTCTGCCTCT 60.362 61.111 9.73 0.00 0.00 3.69
1846 1851 2.784356 CCTCTGCTCTGGCTCTCGG 61.784 68.421 0.00 0.00 39.59 4.63
1854 1859 2.222027 CTCTGGCTCTCGGTTTTGTTT 58.778 47.619 0.00 0.00 0.00 2.83
1856 1861 1.001378 CTGGCTCTCGGTTTTGTTTGG 60.001 52.381 0.00 0.00 0.00 3.28
1863 1868 5.180680 GCTCTCGGTTTTGTTTGGTAGTAAT 59.819 40.000 0.00 0.00 0.00 1.89
1870 1875 7.358848 CGGTTTTGTTTGGTAGTAATTGCATTC 60.359 37.037 0.00 0.00 0.00 2.67
1906 1916 9.512435 CAACTAAAAAGCATAGGATTTGATGAG 57.488 33.333 0.00 0.00 31.99 2.90
1920 1930 6.536941 GGATTTGATGAGACTTCAGAGGTTAC 59.463 42.308 0.00 0.00 36.61 2.50
1921 1931 4.703645 TGATGAGACTTCAGAGGTTACG 57.296 45.455 0.00 0.00 36.61 3.18
1931 1947 6.702329 ACTTCAGAGGTTACGAATTCTCAAT 58.298 36.000 3.52 0.00 0.00 2.57
1934 1950 4.872691 CAGAGGTTACGAATTCTCAATGCT 59.127 41.667 3.52 0.00 0.00 3.79
1973 1989 6.709281 ACCAAAATTATGCATCAATTGACCA 58.291 32.000 11.07 11.44 0.00 4.02
1974 1990 7.340256 ACCAAAATTATGCATCAATTGACCAT 58.660 30.769 20.72 20.72 0.00 3.55
1975 1991 7.281324 ACCAAAATTATGCATCAATTGACCATG 59.719 33.333 23.60 15.25 0.00 3.66
1976 1992 7.281324 CCAAAATTATGCATCAATTGACCATGT 59.719 33.333 23.60 14.38 0.00 3.21
1978 1994 8.795842 AAATTATGCATCAATTGACCATGTTT 57.204 26.923 23.60 20.54 0.00 2.83
1979 1995 8.428186 AATTATGCATCAATTGACCATGTTTC 57.572 30.769 23.60 5.60 0.00 2.78
1986 2002 9.585099 GCATCAATTGACCATGTTTCTTTAATA 57.415 29.630 11.07 0.00 0.00 0.98
2123 2140 3.487574 CCTCACTCGCACTTTCGATTATC 59.512 47.826 0.00 0.00 37.87 1.75
2409 2426 4.579869 ACAACACGAAGCCTTGAGATATT 58.420 39.130 0.00 0.00 0.00 1.28
2478 2497 4.242475 TGCAGACCGTACTACATTCAAAG 58.758 43.478 0.00 0.00 0.00 2.77
2827 2866 8.328864 GGAGAATGTCAATAACACGATAAAGAC 58.671 37.037 0.00 0.00 41.75 3.01
2844 2887 9.069078 CGATAAAGACGTGAAACTTTAGACATA 57.931 33.333 11.41 0.00 40.35 2.29
2858 2901 9.701098 AACTTTAGACATACAAGTAACGAATGA 57.299 29.630 0.00 0.00 30.37 2.57
2916 2959 5.923733 ACAACCAACCATTGTACAAAAGA 57.076 34.783 13.23 0.00 38.51 2.52
3021 3064 1.003866 GAGATGCGTGATTTTACCCGC 60.004 52.381 0.00 0.00 45.92 6.13
3038 3081 1.314534 CGCATGGCATGGTTCCTTCA 61.315 55.000 27.48 0.00 0.00 3.02
3051 3094 2.814336 GTTCCTTCATGGGTTGAGACAC 59.186 50.000 0.00 0.00 35.27 3.67
3061 3104 2.288025 TTGAGACACGCCTACCCCC 61.288 63.158 0.00 0.00 0.00 5.40
3068 3111 2.124320 CGCCTACCCCCATGTTGG 60.124 66.667 0.00 0.00 37.25 3.77
3076 3119 2.397597 ACCCCCATGTTGGAAATATGC 58.602 47.619 4.85 0.00 43.17 3.14
3078 3121 1.693606 CCCCATGTTGGAAATATGCCC 59.306 52.381 0.00 0.00 43.17 5.36
3177 3220 6.393171 TGATCCTAGAATATGCGATTCAGTG 58.607 40.000 12.28 0.00 0.00 3.66
3178 3221 6.209391 TGATCCTAGAATATGCGATTCAGTGA 59.791 38.462 12.28 0.00 0.00 3.41
3183 3226 7.852945 CCTAGAATATGCGATTCAGTGAAAAAC 59.147 37.037 10.14 2.69 0.00 2.43
3188 3231 6.741992 ATGCGATTCAGTGAAAAACTCATA 57.258 33.333 10.14 0.00 36.83 2.15
3194 3237 6.631971 TTCAGTGAAAAACTCATATGCACA 57.368 33.333 2.20 0.00 36.83 4.57
3197 3240 5.287752 CAGTGAAAAACTCATATGCACATGC 59.712 40.000 0.00 0.00 36.83 4.06
3199 3242 6.375174 AGTGAAAAACTCATATGCACATGCTA 59.625 34.615 0.00 0.00 37.98 3.49
3211 3254 5.809719 TGCACATGCTAAATGATAAACGA 57.190 34.783 5.31 0.00 42.66 3.85
3261 3304 7.309255 CCTCTAAGACTAGCTCAAGTGTTGTTA 60.309 40.741 8.83 0.00 34.22 2.41
3281 3324 5.584649 TGTTAGTGATCATGTTTTCCGGATC 59.415 40.000 4.15 0.00 37.31 3.36
3283 3326 1.939934 TGATCATGTTTTCCGGATCGC 59.060 47.619 4.15 0.00 39.14 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.801997 AATGGGCCTCGCTCCTGG 61.802 66.667 4.53 0.00 0.00 4.45
6 7 2.515523 CAATGGGCCTCGCTCCTG 60.516 66.667 4.53 0.00 0.00 3.86
7 8 3.801997 CCAATGGGCCTCGCTCCT 61.802 66.667 4.53 0.00 0.00 3.69
8 9 4.115199 ACCAATGGGCCTCGCTCC 62.115 66.667 4.53 0.00 37.90 4.70
9 10 2.514824 GACCAATGGGCCTCGCTC 60.515 66.667 4.53 0.00 37.90 5.03
16 17 2.754254 GAACCGGGACCAATGGGC 60.754 66.667 6.32 0.00 37.90 5.36
17 18 2.437716 CGAACCGGGACCAATGGG 60.438 66.667 6.32 0.00 41.29 4.00
18 19 2.038269 CACGAACCGGGACCAATGG 61.038 63.158 6.32 0.00 28.17 3.16
19 20 2.038269 CCACGAACCGGGACCAATG 61.038 63.158 6.32 0.00 28.17 2.82
20 21 2.349755 CCACGAACCGGGACCAAT 59.650 61.111 6.32 0.00 28.17 3.16
21 22 4.629523 GCCACGAACCGGGACCAA 62.630 66.667 6.32 0.00 28.17 3.67
24 25 2.438951 TTACAGCCACGAACCGGGAC 62.439 60.000 6.32 0.00 28.17 4.46
25 26 2.208619 TTACAGCCACGAACCGGGA 61.209 57.895 6.32 0.00 28.17 5.14
26 27 2.030958 GTTACAGCCACGAACCGGG 61.031 63.158 6.32 0.00 0.00 5.73
27 28 2.030958 GGTTACAGCCACGAACCGG 61.031 63.158 0.00 0.00 33.75 5.28
28 29 3.557824 GGTTACAGCCACGAACCG 58.442 61.111 0.00 0.00 33.75 4.44
29 30 2.030958 CCGGTTACAGCCACGAACC 61.031 63.158 0.00 0.00 39.44 3.62
30 31 2.030958 CCCGGTTACAGCCACGAAC 61.031 63.158 0.00 0.00 0.00 3.95
31 32 2.208619 TCCCGGTTACAGCCACGAA 61.209 57.895 0.00 0.00 0.00 3.85
32 33 2.601067 TCCCGGTTACAGCCACGA 60.601 61.111 0.00 0.00 0.00 4.35
33 34 2.433664 GTCCCGGTTACAGCCACG 60.434 66.667 0.00 0.00 0.00 4.94
34 35 0.535553 TTTGTCCCGGTTACAGCCAC 60.536 55.000 0.00 0.00 0.00 5.01
35 36 0.183014 TTTTGTCCCGGTTACAGCCA 59.817 50.000 0.00 0.00 0.00 4.75
36 37 0.879090 CTTTTGTCCCGGTTACAGCC 59.121 55.000 0.00 0.00 0.00 4.85
37 38 0.879090 CCTTTTGTCCCGGTTACAGC 59.121 55.000 0.00 0.00 0.00 4.40
38 39 1.202842 ACCCTTTTGTCCCGGTTACAG 60.203 52.381 0.00 0.00 0.00 2.74
39 40 0.845337 ACCCTTTTGTCCCGGTTACA 59.155 50.000 0.00 0.93 0.00 2.41
40 41 1.527034 GACCCTTTTGTCCCGGTTAC 58.473 55.000 0.00 0.00 0.00 2.50
42 43 4.914128 GACCCTTTTGTCCCGGTT 57.086 55.556 0.00 0.00 0.00 4.44
48 49 1.871676 GTTCGTCTGGACCCTTTTGTC 59.128 52.381 0.00 0.00 34.42 3.18
49 50 1.476291 GGTTCGTCTGGACCCTTTTGT 60.476 52.381 0.00 0.00 0.00 2.83
50 51 1.235724 GGTTCGTCTGGACCCTTTTG 58.764 55.000 0.00 0.00 0.00 2.44
51 52 0.250166 CGGTTCGTCTGGACCCTTTT 60.250 55.000 0.00 0.00 0.00 2.27
52 53 1.370064 CGGTTCGTCTGGACCCTTT 59.630 57.895 0.00 0.00 0.00 3.11
53 54 2.580601 CCGGTTCGTCTGGACCCTT 61.581 63.158 0.00 0.00 45.09 3.95
54 55 2.995574 CCGGTTCGTCTGGACCCT 60.996 66.667 0.00 0.00 45.09 4.34
55 56 4.078516 CCCGGTTCGTCTGGACCC 62.079 72.222 0.00 0.00 45.09 4.46
56 57 2.993264 TCCCGGTTCGTCTGGACC 60.993 66.667 0.00 0.00 45.09 4.46
57 58 2.260743 GTCCCGGTTCGTCTGGAC 59.739 66.667 0.00 0.00 45.09 4.02
58 59 2.993264 GGTCCCGGTTCGTCTGGA 60.993 66.667 0.00 0.00 45.09 3.86
59 60 2.180159 ATTGGTCCCGGTTCGTCTGG 62.180 60.000 0.00 2.18 42.06 3.86
60 61 1.019278 CATTGGTCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
61 62 1.295423 CATTGGTCCCGGTTCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
62 63 2.396157 GCATTGGTCCCGGTTCGTC 61.396 63.158 0.00 0.00 0.00 4.20
63 64 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
64 65 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
65 66 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
71 72 2.438434 CTCGTGGGGCATTGGTCC 60.438 66.667 0.00 0.00 38.40 4.46
72 73 2.438434 CCTCGTGGGGCATTGGTC 60.438 66.667 0.00 0.00 0.00 4.02
100 101 3.322466 AGTTCGTGAGCCCAGGGG 61.322 66.667 7.91 3.48 38.57 4.79
101 102 2.046892 CAGTTCGTGAGCCCAGGG 60.047 66.667 0.00 0.00 0.00 4.45
102 103 2.046892 CCAGTTCGTGAGCCCAGG 60.047 66.667 0.00 0.00 0.00 4.45
103 104 2.046892 CCCAGTTCGTGAGCCCAG 60.047 66.667 0.00 0.00 0.00 4.45
104 105 2.525629 TCCCAGTTCGTGAGCCCA 60.526 61.111 0.00 0.00 0.00 5.36
105 106 2.047179 GTCCCAGTTCGTGAGCCC 60.047 66.667 0.00 0.00 0.00 5.19
106 107 1.870055 TACGTCCCAGTTCGTGAGCC 61.870 60.000 0.00 0.00 40.50 4.70
107 108 0.172803 ATACGTCCCAGTTCGTGAGC 59.827 55.000 0.00 0.00 40.50 4.26
108 109 1.909376 CATACGTCCCAGTTCGTGAG 58.091 55.000 0.00 0.00 40.50 3.51
109 110 0.108992 GCATACGTCCCAGTTCGTGA 60.109 55.000 0.00 0.00 40.50 4.35
110 111 1.082117 GGCATACGTCCCAGTTCGTG 61.082 60.000 0.00 0.00 40.50 4.35
111 112 1.217244 GGCATACGTCCCAGTTCGT 59.783 57.895 0.00 0.00 42.82 3.85
112 113 1.520787 GGGCATACGTCCCAGTTCG 60.521 63.158 5.94 0.00 43.37 3.95
113 114 4.534401 GGGCATACGTCCCAGTTC 57.466 61.111 5.94 0.00 43.37 3.01
119 120 2.113139 CCCATGGGGCATACGTCC 59.887 66.667 24.53 0.00 35.35 4.79
129 130 2.689691 ATGAACCGGGACCCATGGG 61.690 63.158 30.23 30.23 42.03 4.00
130 131 1.453745 CATGAACCGGGACCCATGG 60.454 63.158 12.15 4.14 34.39 3.66
131 132 0.748005 GTCATGAACCGGGACCCATG 60.748 60.000 12.15 13.18 38.12 3.66
132 133 0.914417 AGTCATGAACCGGGACCCAT 60.914 55.000 12.15 0.00 31.99 4.00
133 134 1.537889 AGTCATGAACCGGGACCCA 60.538 57.895 12.15 0.00 31.99 4.51
134 135 1.078426 CAGTCATGAACCGGGACCC 60.078 63.158 6.32 0.00 31.99 4.46
135 136 0.323629 TTCAGTCATGAACCGGGACC 59.676 55.000 6.32 0.00 40.54 4.46
136 137 3.927555 TTCAGTCATGAACCGGGAC 57.072 52.632 6.32 2.53 40.54 4.46
143 144 4.610605 TTAGTTCCGGTTCAGTCATGAA 57.389 40.909 0.00 0.00 43.20 2.57
144 145 4.221924 TCATTAGTTCCGGTTCAGTCATGA 59.778 41.667 0.00 0.00 0.00 3.07
145 146 4.503910 TCATTAGTTCCGGTTCAGTCATG 58.496 43.478 0.00 0.00 0.00 3.07
146 147 4.759782 CTCATTAGTTCCGGTTCAGTCAT 58.240 43.478 0.00 0.00 0.00 3.06
147 148 3.616560 GCTCATTAGTTCCGGTTCAGTCA 60.617 47.826 0.00 0.00 0.00 3.41
148 149 2.930682 GCTCATTAGTTCCGGTTCAGTC 59.069 50.000 0.00 0.00 0.00 3.51
149 150 2.567615 AGCTCATTAGTTCCGGTTCAGT 59.432 45.455 0.00 0.00 0.00 3.41
150 151 2.932614 CAGCTCATTAGTTCCGGTTCAG 59.067 50.000 0.00 0.00 0.00 3.02
151 152 2.354704 CCAGCTCATTAGTTCCGGTTCA 60.355 50.000 0.00 0.00 0.00 3.18
152 153 2.280628 CCAGCTCATTAGTTCCGGTTC 58.719 52.381 0.00 0.00 0.00 3.62
153 154 1.679032 GCCAGCTCATTAGTTCCGGTT 60.679 52.381 0.00 0.00 0.00 4.44
154 155 0.107654 GCCAGCTCATTAGTTCCGGT 60.108 55.000 0.00 0.00 0.00 5.28
155 156 0.815615 GGCCAGCTCATTAGTTCCGG 60.816 60.000 0.00 0.00 0.00 5.14
156 157 0.107703 TGGCCAGCTCATTAGTTCCG 60.108 55.000 0.00 0.00 0.00 4.30
157 158 1.673168 CTGGCCAGCTCATTAGTTCC 58.327 55.000 22.33 0.00 0.00 3.62
158 159 1.673168 CCTGGCCAGCTCATTAGTTC 58.327 55.000 28.39 0.00 0.00 3.01
159 160 0.394899 GCCTGGCCAGCTCATTAGTT 60.395 55.000 28.39 0.00 0.00 2.24
160 161 1.225704 GCCTGGCCAGCTCATTAGT 59.774 57.895 28.39 0.00 0.00 2.24
161 162 4.154296 GCCTGGCCAGCTCATTAG 57.846 61.111 28.39 12.86 0.00 1.73
174 175 2.677875 GGCTTTGGTCCAGGCCTG 60.678 66.667 26.87 26.87 41.20 4.85
177 178 2.677875 CAGGGCTTTGGTCCAGGC 60.678 66.667 9.58 9.58 40.27 4.85
178 179 0.469892 AAACAGGGCTTTGGTCCAGG 60.470 55.000 0.00 0.00 40.27 4.45
179 180 1.341209 GAAAACAGGGCTTTGGTCCAG 59.659 52.381 0.00 0.00 40.27 3.86
180 181 1.063266 AGAAAACAGGGCTTTGGTCCA 60.063 47.619 0.00 0.00 40.27 4.02
181 182 1.704641 AGAAAACAGGGCTTTGGTCC 58.295 50.000 0.00 0.00 37.52 4.46
182 183 3.487372 AGTAGAAAACAGGGCTTTGGTC 58.513 45.455 0.00 0.00 0.00 4.02
183 184 3.595190 AGTAGAAAACAGGGCTTTGGT 57.405 42.857 0.00 0.00 0.00 3.67
184 185 4.455877 CACTAGTAGAAAACAGGGCTTTGG 59.544 45.833 3.59 0.00 0.00 3.28
185 186 5.305585 TCACTAGTAGAAAACAGGGCTTTG 58.694 41.667 3.59 0.00 0.00 2.77
186 187 5.562298 TCACTAGTAGAAAACAGGGCTTT 57.438 39.130 3.59 0.00 0.00 3.51
187 188 5.763876 ATCACTAGTAGAAAACAGGGCTT 57.236 39.130 3.59 0.00 0.00 4.35
188 189 8.589338 CATATATCACTAGTAGAAAACAGGGCT 58.411 37.037 3.59 0.00 0.00 5.19
189 190 7.819900 CCATATATCACTAGTAGAAAACAGGGC 59.180 40.741 3.59 0.00 0.00 5.19
190 191 7.819900 GCCATATATCACTAGTAGAAAACAGGG 59.180 40.741 3.59 0.00 0.00 4.45
191 192 7.819900 GGCCATATATCACTAGTAGAAAACAGG 59.180 40.741 3.59 0.00 0.00 4.00
192 193 7.819900 GGGCCATATATCACTAGTAGAAAACAG 59.180 40.741 4.39 0.00 0.00 3.16
193 194 7.256547 GGGGCCATATATCACTAGTAGAAAACA 60.257 40.741 4.39 0.00 0.00 2.83
194 195 7.104290 GGGGCCATATATCACTAGTAGAAAAC 58.896 42.308 4.39 0.00 0.00 2.43
195 196 6.214819 GGGGGCCATATATCACTAGTAGAAAA 59.785 42.308 4.39 0.00 0.00 2.29
196 197 5.724854 GGGGGCCATATATCACTAGTAGAAA 59.275 44.000 4.39 0.00 0.00 2.52
197 198 5.278061 GGGGGCCATATATCACTAGTAGAA 58.722 45.833 4.39 0.00 0.00 2.10
198 199 4.880164 GGGGGCCATATATCACTAGTAGA 58.120 47.826 4.39 0.00 0.00 2.59
227 228 6.782000 TGGAAGAAAATCAGAGATGGGAAAAA 59.218 34.615 0.00 0.00 0.00 1.94
228 229 6.314120 TGGAAGAAAATCAGAGATGGGAAAA 58.686 36.000 0.00 0.00 0.00 2.29
229 230 5.891198 TGGAAGAAAATCAGAGATGGGAAA 58.109 37.500 0.00 0.00 0.00 3.13
230 231 5.519183 TGGAAGAAAATCAGAGATGGGAA 57.481 39.130 0.00 0.00 0.00 3.97
231 232 5.519183 TTGGAAGAAAATCAGAGATGGGA 57.481 39.130 0.00 0.00 0.00 4.37
232 233 6.786967 ATTTGGAAGAAAATCAGAGATGGG 57.213 37.500 0.00 0.00 0.00 4.00
233 234 8.743085 TCTATTTGGAAGAAAATCAGAGATGG 57.257 34.615 0.00 0.00 32.16 3.51
295 296 9.846248 GAAAATGTCATCTTAATGTTAAGCACT 57.154 29.630 7.49 0.00 39.90 4.40
296 297 9.076596 GGAAAATGTCATCTTAATGTTAAGCAC 57.923 33.333 7.49 5.38 39.90 4.40
297 298 8.250332 GGGAAAATGTCATCTTAATGTTAAGCA 58.750 33.333 7.49 1.67 39.90 3.91
298 299 8.470002 AGGGAAAATGTCATCTTAATGTTAAGC 58.530 33.333 7.49 0.00 39.90 3.09
300 301 8.966868 GGAGGGAAAATGTCATCTTAATGTTAA 58.033 33.333 0.00 0.00 34.32 2.01
301 302 7.559897 GGGAGGGAAAATGTCATCTTAATGTTA 59.440 37.037 0.00 0.00 34.32 2.41
302 303 6.381133 GGGAGGGAAAATGTCATCTTAATGTT 59.619 38.462 0.00 0.00 34.32 2.71
303 304 5.893824 GGGAGGGAAAATGTCATCTTAATGT 59.106 40.000 0.00 0.00 34.32 2.71
304 305 5.893255 TGGGAGGGAAAATGTCATCTTAATG 59.107 40.000 0.00 0.00 0.00 1.90
305 306 6.091076 TGGGAGGGAAAATGTCATCTTAAT 57.909 37.500 0.00 0.00 0.00 1.40
306 307 5.528600 TGGGAGGGAAAATGTCATCTTAA 57.471 39.130 0.00 0.00 0.00 1.85
307 308 5.433051 AGATGGGAGGGAAAATGTCATCTTA 59.567 40.000 0.00 0.00 37.24 2.10
308 309 4.231426 AGATGGGAGGGAAAATGTCATCTT 59.769 41.667 0.00 0.00 37.24 2.40
309 310 3.790408 AGATGGGAGGGAAAATGTCATCT 59.210 43.478 0.00 0.00 36.17 2.90
310 311 4.140536 GAGATGGGAGGGAAAATGTCATC 58.859 47.826 0.00 0.00 0.00 2.92
311 312 3.117360 GGAGATGGGAGGGAAAATGTCAT 60.117 47.826 0.00 0.00 0.00 3.06
312 313 2.242196 GGAGATGGGAGGGAAAATGTCA 59.758 50.000 0.00 0.00 0.00 3.58
313 314 2.242196 TGGAGATGGGAGGGAAAATGTC 59.758 50.000 0.00 0.00 0.00 3.06
314 315 2.287584 TGGAGATGGGAGGGAAAATGT 58.712 47.619 0.00 0.00 0.00 2.71
315 316 3.386932 TTGGAGATGGGAGGGAAAATG 57.613 47.619 0.00 0.00 0.00 2.32
316 317 5.955850 ATATTGGAGATGGGAGGGAAAAT 57.044 39.130 0.00 0.00 0.00 1.82
317 318 5.749422 AATATTGGAGATGGGAGGGAAAA 57.251 39.130 0.00 0.00 0.00 2.29
318 319 5.436374 AGAAATATTGGAGATGGGAGGGAAA 59.564 40.000 0.00 0.00 0.00 3.13
319 320 4.984268 AGAAATATTGGAGATGGGAGGGAA 59.016 41.667 0.00 0.00 0.00 3.97
320 321 4.581233 AGAAATATTGGAGATGGGAGGGA 58.419 43.478 0.00 0.00 0.00 4.20
321 322 5.320277 GAAGAAATATTGGAGATGGGAGGG 58.680 45.833 0.00 0.00 0.00 4.30
322 323 5.163055 TGGAAGAAATATTGGAGATGGGAGG 60.163 44.000 0.00 0.00 0.00 4.30
323 324 5.945310 TGGAAGAAATATTGGAGATGGGAG 58.055 41.667 0.00 0.00 0.00 4.30
324 325 5.992564 TGGAAGAAATATTGGAGATGGGA 57.007 39.130 0.00 0.00 0.00 4.37
325 326 7.607615 ATTTGGAAGAAATATTGGAGATGGG 57.392 36.000 0.00 0.00 0.00 4.00
336 337 9.555727 CGGAGGAAGTATTATTTGGAAGAAATA 57.444 33.333 0.00 0.00 0.00 1.40
337 338 8.053355 ACGGAGGAAGTATTATTTGGAAGAAAT 58.947 33.333 0.00 0.00 0.00 2.17
338 339 7.399634 ACGGAGGAAGTATTATTTGGAAGAAA 58.600 34.615 0.00 0.00 0.00 2.52
339 340 6.954232 ACGGAGGAAGTATTATTTGGAAGAA 58.046 36.000 0.00 0.00 0.00 2.52
340 341 6.555463 ACGGAGGAAGTATTATTTGGAAGA 57.445 37.500 0.00 0.00 0.00 2.87
341 342 6.260271 GGAACGGAGGAAGTATTATTTGGAAG 59.740 42.308 0.00 0.00 0.00 3.46
342 343 6.069847 AGGAACGGAGGAAGTATTATTTGGAA 60.070 38.462 0.00 0.00 0.00 3.53
343 344 5.427481 AGGAACGGAGGAAGTATTATTTGGA 59.573 40.000 0.00 0.00 0.00 3.53
344 345 5.681639 AGGAACGGAGGAAGTATTATTTGG 58.318 41.667 0.00 0.00 0.00 3.28
345 346 8.726870 TTTAGGAACGGAGGAAGTATTATTTG 57.273 34.615 0.00 0.00 0.00 2.32
351 352 9.377238 ACTTATATTTAGGAACGGAGGAAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
352 353 8.773033 ACTTATATTTAGGAACGGAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
353 354 7.564292 AGACTTATATTTAGGAACGGAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
354 355 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
355 356 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
356 357 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
357 358 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
383 384 9.961265 CGTATGTAGTTCATAGTGGAATCTTTA 57.039 33.333 0.00 0.00 39.36 1.85
384 385 7.926555 CCGTATGTAGTTCATAGTGGAATCTTT 59.073 37.037 3.20 0.00 39.36 2.52
385 386 7.287005 TCCGTATGTAGTTCATAGTGGAATCTT 59.713 37.037 7.73 0.00 39.60 2.40
386 387 6.776116 TCCGTATGTAGTTCATAGTGGAATCT 59.224 38.462 7.73 0.00 39.60 2.40
387 388 6.978338 TCCGTATGTAGTTCATAGTGGAATC 58.022 40.000 7.73 0.00 39.60 2.52
388 389 6.516860 GCTCCGTATGTAGTTCATAGTGGAAT 60.517 42.308 10.20 0.00 40.80 3.01
389 390 5.221185 GCTCCGTATGTAGTTCATAGTGGAA 60.221 44.000 10.20 0.00 40.80 3.53
390 391 4.277672 GCTCCGTATGTAGTTCATAGTGGA 59.722 45.833 9.16 9.16 39.94 4.02
391 392 4.037565 TGCTCCGTATGTAGTTCATAGTGG 59.962 45.833 2.99 2.99 39.36 4.00
392 393 5.183014 TGCTCCGTATGTAGTTCATAGTG 57.817 43.478 0.00 0.00 39.36 2.74
393 394 5.847111 TTGCTCCGTATGTAGTTCATAGT 57.153 39.130 0.00 0.00 39.36 2.12
394 395 7.438160 TCATTTTGCTCCGTATGTAGTTCATAG 59.562 37.037 0.00 0.00 39.36 2.23
395 396 7.269316 TCATTTTGCTCCGTATGTAGTTCATA 58.731 34.615 0.00 0.00 37.91 2.15
396 397 6.112734 TCATTTTGCTCCGTATGTAGTTCAT 58.887 36.000 0.00 0.00 40.25 2.57
397 398 5.483811 TCATTTTGCTCCGTATGTAGTTCA 58.516 37.500 0.00 0.00 0.00 3.18
398 399 5.581085 ACTCATTTTGCTCCGTATGTAGTTC 59.419 40.000 0.00 0.00 0.00 3.01
399 400 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
400 401 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
401 402 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
402 403 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
403 404 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
404 405 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
405 406 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
406 407 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
407 408 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
408 409 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
409 410 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
410 411 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
421 422 7.813852 AGACGTATTTTGAGTGTAGATTCAC 57.186 36.000 0.00 0.00 38.46 3.18
422 423 7.695201 CGTAGACGTATTTTGAGTGTAGATTCA 59.305 37.037 0.00 0.00 34.11 2.57
423 424 8.037058 CGTAGACGTATTTTGAGTGTAGATTC 57.963 38.462 0.00 0.00 34.11 2.52
424 425 7.966157 CGTAGACGTATTTTGAGTGTAGATT 57.034 36.000 0.00 0.00 34.11 2.40
449 450 9.471084 CATTACAAACGAGTACATATGGATGTA 57.529 33.333 7.80 0.23 44.77 2.29
451 452 7.655732 TCCATTACAAACGAGTACATATGGATG 59.344 37.037 7.80 0.00 35.51 3.51
452 453 7.732025 TCCATTACAAACGAGTACATATGGAT 58.268 34.615 7.80 0.00 35.51 3.41
453 454 7.114866 TCCATTACAAACGAGTACATATGGA 57.885 36.000 7.80 0.00 36.92 3.41
454 455 7.780008 TTCCATTACAAACGAGTACATATGG 57.220 36.000 7.80 0.00 33.87 2.74
455 456 9.261180 AGATTCCATTACAAACGAGTACATATG 57.739 33.333 0.00 0.00 0.00 1.78
456 457 9.477484 GAGATTCCATTACAAACGAGTACATAT 57.523 33.333 0.00 0.00 0.00 1.78
457 458 8.692710 AGAGATTCCATTACAAACGAGTACATA 58.307 33.333 0.00 0.00 0.00 2.29
458 459 7.556844 AGAGATTCCATTACAAACGAGTACAT 58.443 34.615 0.00 0.00 0.00 2.29
459 460 6.931838 AGAGATTCCATTACAAACGAGTACA 58.068 36.000 0.00 0.00 0.00 2.90
460 461 8.922058 TTAGAGATTCCATTACAAACGAGTAC 57.078 34.615 0.00 0.00 0.00 2.73
461 462 9.932207 TTTTAGAGATTCCATTACAAACGAGTA 57.068 29.630 0.00 0.00 0.00 2.59
462 463 8.842358 TTTTAGAGATTCCATTACAAACGAGT 57.158 30.769 0.00 0.00 0.00 4.18
463 464 9.760660 CTTTTTAGAGATTCCATTACAAACGAG 57.239 33.333 0.00 0.00 0.00 4.18
464 465 9.496873 TCTTTTTAGAGATTCCATTACAAACGA 57.503 29.630 0.00 0.00 0.00 3.85
465 466 9.543018 GTCTTTTTAGAGATTCCATTACAAACG 57.457 33.333 0.00 0.00 0.00 3.60
484 485 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
485 486 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
486 487 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
487 488 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
488 489 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
489 490 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
490 491 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
491 492 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
492 493 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
493 494 8.731591 AATTACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
494 495 7.628501 AATTACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
495 496 7.441903 AAATTACTCCCTCCGTTCCTAAATA 57.558 36.000 0.00 0.00 0.00 1.40
496 497 5.970501 AATTACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
497 498 5.767277 AAATTACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
498 499 5.767277 AAAATTACTCCCTCCGTTCCTAA 57.233 39.130 0.00 0.00 0.00 2.69
499 500 5.767277 AAAAATTACTCCCTCCGTTCCTA 57.233 39.130 0.00 0.00 0.00 2.94
500 501 4.652679 AAAAATTACTCCCTCCGTTCCT 57.347 40.909 0.00 0.00 0.00 3.36
522 523 9.029368 CCTAGATGAGAATATATTGACTCACCA 57.971 37.037 15.46 6.54 41.16 4.17
523 524 9.030452 ACCTAGATGAGAATATATTGACTCACC 57.970 37.037 15.46 8.93 41.16 4.02
534 535 9.965902 AACTCAACAAAACCTAGATGAGAATAT 57.034 29.630 7.51 0.00 37.86 1.28
536 537 9.220767 GTAACTCAACAAAACCTAGATGAGAAT 57.779 33.333 7.51 0.00 37.86 2.40
537 538 8.208224 TGTAACTCAACAAAACCTAGATGAGAA 58.792 33.333 7.51 0.00 37.86 2.87
538 539 7.732025 TGTAACTCAACAAAACCTAGATGAGA 58.268 34.615 7.51 0.00 37.86 3.27
539 540 7.962964 TGTAACTCAACAAAACCTAGATGAG 57.037 36.000 0.00 0.00 39.62 2.90
540 541 8.740123 TTTGTAACTCAACAAAACCTAGATGA 57.260 30.769 0.00 0.00 44.23 2.92
564 565 9.154847 GCCTCAACAAAGCATATATTTTTCTTT 57.845 29.630 0.00 0.00 0.00 2.52
565 566 8.534496 AGCCTCAACAAAGCATATATTTTTCTT 58.466 29.630 0.00 0.00 0.00 2.52
566 567 8.071177 AGCCTCAACAAAGCATATATTTTTCT 57.929 30.769 0.00 0.00 0.00 2.52
567 568 7.975616 TGAGCCTCAACAAAGCATATATTTTTC 59.024 33.333 0.00 0.00 0.00 2.29
568 569 7.839907 TGAGCCTCAACAAAGCATATATTTTT 58.160 30.769 0.00 0.00 0.00 1.94
569 570 7.408756 TGAGCCTCAACAAAGCATATATTTT 57.591 32.000 0.00 0.00 0.00 1.82
570 571 7.408756 TTGAGCCTCAACAAAGCATATATTT 57.591 32.000 2.24 0.00 30.26 1.40
588 589 0.954452 CACTGTTTGGAGGTTGAGCC 59.046 55.000 0.00 0.00 37.58 4.70
589 590 1.604278 GACACTGTTTGGAGGTTGAGC 59.396 52.381 0.00 0.00 0.00 4.26
590 591 2.222027 GGACACTGTTTGGAGGTTGAG 58.778 52.381 0.00 0.00 0.00 3.02
591 592 1.474320 CGGACACTGTTTGGAGGTTGA 60.474 52.381 0.00 0.00 0.00 3.18
592 593 0.944386 CGGACACTGTTTGGAGGTTG 59.056 55.000 0.00 0.00 0.00 3.77
593 594 0.818040 GCGGACACTGTTTGGAGGTT 60.818 55.000 0.00 0.00 0.00 3.50
594 595 1.227853 GCGGACACTGTTTGGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
595 596 0.606401 ATGCGGACACTGTTTGGAGG 60.606 55.000 0.00 0.00 0.00 4.30
596 597 0.798776 GATGCGGACACTGTTTGGAG 59.201 55.000 0.00 0.00 0.00 3.86
597 598 0.107643 TGATGCGGACACTGTTTGGA 59.892 50.000 0.00 0.00 0.00 3.53
598 599 0.238289 GTGATGCGGACACTGTTTGG 59.762 55.000 0.00 0.00 35.66 3.28
599 600 0.238289 GGTGATGCGGACACTGTTTG 59.762 55.000 8.87 0.00 38.20 2.93
600 601 0.108585 AGGTGATGCGGACACTGTTT 59.891 50.000 8.87 0.00 38.20 2.83
601 602 0.320771 GAGGTGATGCGGACACTGTT 60.321 55.000 8.87 0.00 38.20 3.16
602 603 1.293498 GAGGTGATGCGGACACTGT 59.707 57.895 8.87 0.00 38.20 3.55
603 604 1.807165 CGAGGTGATGCGGACACTG 60.807 63.158 8.87 0.00 38.20 3.66
604 605 1.938657 CTCGAGGTGATGCGGACACT 61.939 60.000 3.91 0.00 38.20 3.55
605 606 1.517257 CTCGAGGTGATGCGGACAC 60.517 63.158 3.91 0.00 37.51 3.67
606 607 2.885113 CTCGAGGTGATGCGGACA 59.115 61.111 3.91 0.00 0.00 4.02
607 608 2.564553 AAGCTCGAGGTGATGCGGAC 62.565 60.000 19.39 0.00 0.00 4.79
608 609 2.284798 GAAGCTCGAGGTGATGCGGA 62.285 60.000 19.39 0.00 0.00 5.54
609 610 1.880340 GAAGCTCGAGGTGATGCGG 60.880 63.158 19.39 0.00 0.00 5.69
610 611 1.153765 TGAAGCTCGAGGTGATGCG 60.154 57.895 19.39 0.00 0.00 4.73
611 612 1.416813 CGTGAAGCTCGAGGTGATGC 61.417 60.000 19.39 8.80 0.00 3.91
612 613 0.171231 TCGTGAAGCTCGAGGTGATG 59.829 55.000 19.39 13.13 33.38 3.07
613 614 1.107114 ATCGTGAAGCTCGAGGTGAT 58.893 50.000 19.39 13.22 40.57 3.06
614 615 0.171231 CATCGTGAAGCTCGAGGTGA 59.829 55.000 19.39 11.34 40.57 4.02
615 616 0.803768 CCATCGTGAAGCTCGAGGTG 60.804 60.000 19.39 5.57 40.57 4.00
616 617 1.513158 CCATCGTGAAGCTCGAGGT 59.487 57.895 12.24 12.24 40.57 3.85
617 618 1.227089 CCCATCGTGAAGCTCGAGG 60.227 63.158 15.58 1.86 40.57 4.63
618 619 0.173481 TTCCCATCGTGAAGCTCGAG 59.827 55.000 8.45 8.45 40.57 4.04
619 620 0.108804 GTTCCCATCGTGAAGCTCGA 60.109 55.000 0.00 0.00 41.45 4.04
620 621 1.413767 CGTTCCCATCGTGAAGCTCG 61.414 60.000 0.00 0.00 0.00 5.03
621 622 0.389948 ACGTTCCCATCGTGAAGCTC 60.390 55.000 0.00 0.00 40.07 4.09
622 623 0.034896 AACGTTCCCATCGTGAAGCT 59.965 50.000 0.00 0.00 41.38 3.74
623 624 0.165944 CAACGTTCCCATCGTGAAGC 59.834 55.000 0.00 0.00 41.38 3.86
624 625 0.165944 GCAACGTTCCCATCGTGAAG 59.834 55.000 0.00 0.00 41.38 3.02
625 626 0.533085 TGCAACGTTCCCATCGTGAA 60.533 50.000 0.00 0.00 41.38 3.18
626 627 1.069935 TGCAACGTTCCCATCGTGA 59.930 52.632 0.00 0.00 41.38 4.35
627 628 1.206578 GTGCAACGTTCCCATCGTG 59.793 57.895 0.00 0.00 41.38 4.35
628 629 1.964373 GGTGCAACGTTCCCATCGT 60.964 57.895 0.00 0.00 43.45 3.73
629 630 1.305219 ATGGTGCAACGTTCCCATCG 61.305 55.000 14.78 0.00 38.12 3.84
630 631 0.171007 CATGGTGCAACGTTCCCATC 59.829 55.000 16.77 10.20 38.12 3.51
631 632 1.250154 CCATGGTGCAACGTTCCCAT 61.250 55.000 14.78 14.78 38.12 4.00
632 633 1.900981 CCATGGTGCAACGTTCCCA 60.901 57.895 2.57 11.94 38.12 4.37
633 634 1.602323 TCCATGGTGCAACGTTCCC 60.602 57.895 12.58 0.00 38.12 3.97
634 635 1.579429 GTCCATGGTGCAACGTTCC 59.421 57.895 12.58 0.00 38.12 3.62
635 636 1.169661 TGGTCCATGGTGCAACGTTC 61.170 55.000 12.58 0.00 38.12 3.95
636 637 0.753479 TTGGTCCATGGTGCAACGTT 60.753 50.000 12.58 0.00 38.12 3.99
637 638 1.152860 TTGGTCCATGGTGCAACGT 60.153 52.632 12.58 0.00 38.12 3.99
638 639 1.285641 GTTGGTCCATGGTGCAACG 59.714 57.895 12.58 0.00 38.12 4.10
639 640 0.314935 CTGTTGGTCCATGGTGCAAC 59.685 55.000 12.58 12.46 0.00 4.17
640 641 0.184692 TCTGTTGGTCCATGGTGCAA 59.815 50.000 12.58 0.00 0.00 4.08
641 642 0.405198 ATCTGTTGGTCCATGGTGCA 59.595 50.000 12.58 4.21 0.00 4.57
642 643 1.203052 CAATCTGTTGGTCCATGGTGC 59.797 52.381 12.58 6.08 0.00 5.01
643 644 2.751259 CTCAATCTGTTGGTCCATGGTG 59.249 50.000 12.58 0.00 35.99 4.17
644 645 2.291153 CCTCAATCTGTTGGTCCATGGT 60.291 50.000 12.58 0.00 35.99 3.55
645 646 2.372264 CCTCAATCTGTTGGTCCATGG 58.628 52.381 4.97 4.97 35.99 3.66
646 647 2.291153 ACCCTCAATCTGTTGGTCCATG 60.291 50.000 0.00 0.00 35.99 3.66
647 648 1.995542 ACCCTCAATCTGTTGGTCCAT 59.004 47.619 0.00 0.00 35.99 3.41
648 649 1.073763 CACCCTCAATCTGTTGGTCCA 59.926 52.381 0.00 0.00 35.99 4.02
649 650 1.073923 ACACCCTCAATCTGTTGGTCC 59.926 52.381 0.00 0.00 35.99 4.46
650 651 2.568623 ACACCCTCAATCTGTTGGTC 57.431 50.000 0.00 0.00 35.99 4.02
651 652 3.222603 GAAACACCCTCAATCTGTTGGT 58.777 45.455 0.00 0.00 35.99 3.67
652 653 2.558359 GGAAACACCCTCAATCTGTTGG 59.442 50.000 0.00 0.00 35.99 3.77
653 654 2.226437 CGGAAACACCCTCAATCTGTTG 59.774 50.000 0.00 0.00 34.28 3.33
654 655 2.105821 TCGGAAACACCCTCAATCTGTT 59.894 45.455 0.00 0.00 34.64 3.16
655 656 1.697432 TCGGAAACACCCTCAATCTGT 59.303 47.619 0.00 0.00 34.64 3.41
656 657 2.472695 TCGGAAACACCCTCAATCTG 57.527 50.000 0.00 0.00 34.64 2.90
657 658 2.372172 AGTTCGGAAACACCCTCAATCT 59.628 45.455 0.00 0.00 37.88 2.40
658 659 2.779506 AGTTCGGAAACACCCTCAATC 58.220 47.619 0.00 0.00 37.88 2.67
659 660 2.951229 AGTTCGGAAACACCCTCAAT 57.049 45.000 0.00 0.00 37.88 2.57
660 661 2.567985 GAAGTTCGGAAACACCCTCAA 58.432 47.619 0.00 0.00 37.88 3.02
661 662 1.202722 GGAAGTTCGGAAACACCCTCA 60.203 52.381 0.00 0.00 37.88 3.86
662 663 1.520494 GGAAGTTCGGAAACACCCTC 58.480 55.000 0.00 0.00 37.88 4.30
663 664 0.109913 GGGAAGTTCGGAAACACCCT 59.890 55.000 15.46 0.00 44.10 4.34
664 665 0.179012 TGGGAAGTTCGGAAACACCC 60.179 55.000 15.72 15.72 45.88 4.61
665 666 1.810755 GATGGGAAGTTCGGAAACACC 59.189 52.381 0.00 0.00 37.88 4.16
666 667 2.500229 TGATGGGAAGTTCGGAAACAC 58.500 47.619 0.00 0.00 37.88 3.32
667 668 2.940994 TGATGGGAAGTTCGGAAACA 57.059 45.000 0.00 0.00 37.88 2.83
682 683 9.193133 TCTCTTCTCGTAGTTTTTAGTTTGATG 57.807 33.333 0.00 0.00 0.00 3.07
683 684 9.413048 CTCTCTTCTCGTAGTTTTTAGTTTGAT 57.587 33.333 0.00 0.00 0.00 2.57
684 685 7.381678 GCTCTCTTCTCGTAGTTTTTAGTTTGA 59.618 37.037 0.00 0.00 0.00 2.69
688 689 5.180868 TCGCTCTCTTCTCGTAGTTTTTAGT 59.819 40.000 0.00 0.00 0.00 2.24
699 700 0.317436 CGGGATTCGCTCTCTTCTCG 60.317 60.000 0.00 0.00 0.00 4.04
736 737 0.237761 CCTCGGTCGGCTAAGTATCG 59.762 60.000 0.00 0.00 0.00 2.92
885 888 5.445964 TGGAGAAAAAGCTAAAGAGTGGTT 58.554 37.500 0.00 0.00 0.00 3.67
909 912 5.398603 TTCTTTCTTTGCCTCAACAACAA 57.601 34.783 0.00 0.00 0.00 2.83
910 913 4.677779 GCTTCTTTCTTTGCCTCAACAACA 60.678 41.667 0.00 0.00 0.00 3.33
911 914 3.798878 GCTTCTTTCTTTGCCTCAACAAC 59.201 43.478 0.00 0.00 0.00 3.32
940 945 2.926159 GCGAGCAAGGATATGAGAGCTC 60.926 54.545 5.27 5.27 43.61 4.09
941 946 1.000731 GCGAGCAAGGATATGAGAGCT 59.999 52.381 0.00 0.00 34.61 4.09
942 947 1.427435 GCGAGCAAGGATATGAGAGC 58.573 55.000 0.00 0.00 0.00 4.09
943 948 1.342496 TGGCGAGCAAGGATATGAGAG 59.658 52.381 0.00 0.00 0.00 3.20
944 949 1.413118 TGGCGAGCAAGGATATGAGA 58.587 50.000 0.00 0.00 0.00 3.27
945 950 2.344950 GATGGCGAGCAAGGATATGAG 58.655 52.381 0.00 0.00 0.00 2.90
946 951 1.337167 CGATGGCGAGCAAGGATATGA 60.337 52.381 0.00 0.00 40.82 2.15
947 952 1.073964 CGATGGCGAGCAAGGATATG 58.926 55.000 0.00 0.00 40.82 1.78
948 953 0.671781 GCGATGGCGAGCAAGGATAT 60.672 55.000 0.00 0.00 40.82 1.63
1829 1834 1.603236 AACCGAGAGCCAGAGCAGAG 61.603 60.000 0.00 0.00 43.56 3.35
1830 1835 1.188219 AAACCGAGAGCCAGAGCAGA 61.188 55.000 0.00 0.00 43.56 4.26
1831 1836 0.321122 AAAACCGAGAGCCAGAGCAG 60.321 55.000 0.00 0.00 43.56 4.24
1832 1837 0.603707 CAAAACCGAGAGCCAGAGCA 60.604 55.000 0.00 0.00 43.56 4.26
1846 1851 7.358848 CCGAATGCAATTACTACCAAACAAAAC 60.359 37.037 0.00 0.00 36.07 2.43
1854 1859 4.439057 GTCTCCGAATGCAATTACTACCA 58.561 43.478 0.00 0.00 36.07 3.25
1856 1861 4.110482 ACGTCTCCGAATGCAATTACTAC 58.890 43.478 0.00 0.00 36.07 2.73
1863 1868 1.529438 GTTGAACGTCTCCGAATGCAA 59.471 47.619 0.00 0.00 37.88 4.08
1870 1875 3.246699 TGCTTTTTAGTTGAACGTCTCCG 59.753 43.478 0.00 0.00 40.83 4.63
1906 1916 5.710984 TGAGAATTCGTAACCTCTGAAGTC 58.289 41.667 0.00 0.00 37.07 3.01
1920 1930 4.152045 GCAGATCCTAGCATTGAGAATTCG 59.848 45.833 0.00 0.00 0.00 3.34
1921 1931 5.061853 TGCAGATCCTAGCATTGAGAATTC 58.938 41.667 0.00 0.00 35.51 2.17
1931 1947 4.502105 TGGTTTTATGCAGATCCTAGCA 57.498 40.909 7.44 7.44 45.92 3.49
1964 1980 7.492344 GCCCTATTAAAGAAACATGGTCAATTG 59.508 37.037 0.00 0.00 0.00 2.32
1965 1981 7.180051 TGCCCTATTAAAGAAACATGGTCAATT 59.820 33.333 0.00 0.00 0.00 2.32
1966 1982 6.667414 TGCCCTATTAAAGAAACATGGTCAAT 59.333 34.615 0.00 0.00 0.00 2.57
1967 1983 6.013379 TGCCCTATTAAAGAAACATGGTCAA 58.987 36.000 0.00 0.00 0.00 3.18
1968 1984 5.575157 TGCCCTATTAAAGAAACATGGTCA 58.425 37.500 0.00 0.00 0.00 4.02
1969 1985 6.715347 ATGCCCTATTAAAGAAACATGGTC 57.285 37.500 0.00 0.00 0.00 4.02
1970 1986 6.549736 GGTATGCCCTATTAAAGAAACATGGT 59.450 38.462 0.00 0.00 0.00 3.55
1973 1989 5.768164 CCGGTATGCCCTATTAAAGAAACAT 59.232 40.000 0.00 0.00 0.00 2.71
1974 1990 5.127491 CCGGTATGCCCTATTAAAGAAACA 58.873 41.667 0.00 0.00 0.00 2.83
1975 1991 5.128205 ACCGGTATGCCCTATTAAAGAAAC 58.872 41.667 4.49 0.00 0.00 2.78
1976 1992 5.131475 AGACCGGTATGCCCTATTAAAGAAA 59.869 40.000 7.34 0.00 0.00 2.52
1978 1994 4.039973 CAGACCGGTATGCCCTATTAAAGA 59.960 45.833 17.56 0.00 0.00 2.52
1979 1995 4.039973 TCAGACCGGTATGCCCTATTAAAG 59.960 45.833 24.40 0.00 0.00 1.85
1986 2002 0.398522 TGATCAGACCGGTATGCCCT 60.399 55.000 24.40 11.13 0.00 5.19
2021 2037 2.167219 CACGCGGCCATCTGTGTAG 61.167 63.158 12.47 0.00 40.12 2.74
2139 2156 7.828223 TGCATAACAGAAATGGCCAAAATTAAT 59.172 29.630 10.96 0.00 0.00 1.40
2232 2249 2.037121 TGACCACTTTGCTCGATCTCAA 59.963 45.455 0.00 0.00 0.00 3.02
2478 2497 0.317479 AGTATGCCGCCCTCGTTATC 59.683 55.000 0.00 0.00 0.00 1.75
2607 2630 3.815401 CCCGACAAGAGAATGAAGTTGTT 59.185 43.478 0.00 0.00 33.30 2.83
2827 2866 7.943065 CGTTACTTGTATGTCTAAAGTTTCACG 59.057 37.037 0.00 0.00 35.77 4.35
2844 2887 3.170717 TCCCCTCTCATTCGTTACTTGT 58.829 45.455 0.00 0.00 0.00 3.16
2858 2901 2.269940 AGTGCACTTGTTATCCCCTCT 58.730 47.619 15.25 0.00 0.00 3.69
2945 2988 3.470709 CACTGTCATGGACAACTTGAGT 58.529 45.455 0.33 0.00 42.26 3.41
3021 3064 1.411246 CCATGAAGGAACCATGCCATG 59.589 52.381 0.00 0.00 39.89 3.66
3023 3066 0.324552 CCCATGAAGGAACCATGCCA 60.325 55.000 0.00 0.00 39.89 4.92
3038 3081 0.249398 GTAGGCGTGTCTCAACCCAT 59.751 55.000 0.00 0.00 0.00 4.00
3051 3094 2.124320 CCAACATGGGGGTAGGCG 60.124 66.667 0.00 0.00 32.67 5.52
3061 3104 4.763793 CCTCTAGGGCATATTTCCAACATG 59.236 45.833 0.00 0.00 0.00 3.21
3124 3167 8.178313 GCAGTTATAGAATGAAACAGAAACTCC 58.822 37.037 0.00 0.00 0.00 3.85
3160 3203 7.119699 TGAGTTTTTCACTGAATCGCATATTCT 59.880 33.333 9.48 0.00 35.01 2.40
3161 3204 7.243487 TGAGTTTTTCACTGAATCGCATATTC 58.757 34.615 0.00 2.53 35.01 1.75
3177 3220 8.537223 CATTTAGCATGTGCATATGAGTTTTTC 58.463 33.333 25.71 7.17 45.16 2.29
3178 3221 8.252417 TCATTTAGCATGTGCATATGAGTTTTT 58.748 29.630 25.71 6.86 45.16 1.94
3183 3226 9.338291 GTTTATCATTTAGCATGTGCATATGAG 57.662 33.333 25.71 8.41 45.16 2.90
3188 3231 6.375945 TCGTTTATCATTTAGCATGTGCAT 57.624 33.333 7.83 0.00 45.16 3.96
3232 3275 5.775701 ACACTTGAGCTAGTCTTAGAGGAAA 59.224 40.000 0.00 0.00 0.00 3.13
3234 3277 4.924625 ACACTTGAGCTAGTCTTAGAGGA 58.075 43.478 0.00 0.00 0.00 3.71
3261 3304 3.198068 CGATCCGGAAAACATGATCACT 58.802 45.455 9.01 0.00 34.62 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.