>input_sequence_55345
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--------------------------------------------ATGGAGATGCGTCTCCACCTCCATGCGTTGGCGATC
CTTCTGGTCGTCTCGGCGCGGCCTACGTCCGTCGCCGGCGGGCTGTGCCGCGACAGCTGCGGCGACGTCCCGGTGCGCTA
CCCGCTGGGCATCGACGACGGCTGCGGCAGCCCGTATTACCGCAACATGCTGACCTGCGCCGACAACACCACGCTCCGCC
TCCGCACCCCGTCCGGCACGTACCCGGTGTCCGGCGCCGACTACGCGGACCCGCACCTGGTGGTGACGGACCCGTCCATG
TGGACGTGCGCGCGGCCCTTCACCTCCGTCCACGCCGCGCCCTTCAGCCTGGACACCAGCACCCGCTTCTCGCTGTCCCC
GAGGAACGACCACCTCTTCTTCAACTGCGACGAGGAGCGCGTCATCGTGGCGCCGCGGCCGGCCATCTGCGACCGGTACC
CGGACCGGTGCGACTCGGCGTGCGACAGCGCCGGGTACCTGTGCCGGAACCTGCCGGGCTGCCGCGGCGCGCTGGAGGAA
GGGAACATGAGCTGCTGCGCGTACAGGCCCCGCGCGGCGGAGTCGCTGAGGGCCATGCTGCGGCACTGCGAGGCCTACAC
CACCGTGTACTGGCGCGCGGTGGGCGACAAGTTCCCGCCCTACGACCAGGTGCCGGACTACGGGGTCCGGGTGGACTTCG
AGATCCCCGTCACCACGCGGTGCCTGCAGTGCCAGGACCGGCGCCGCGGCGCCAACGGCACCTGCGGCTTCGACCCCGCC
ACCAGGGACTTCGTCTGCATCTGCGACGGCGGCCGGAACTCCACCACGGACTGTGCAGGTGCGCTCTCTCTGCCTCTGCT
CTGGCTCTCGGTTTTGTTTGGTAGTAATTGCATTCGGAGACG-----TTCAACTAAAAAGCATAGGATTTGATGAGACTT
CAGAGGTTACGAA------TTCTCAATGCTAGGATCTGCATAAAACCAAAATTATGCATCAATTGACCATGTTTCTTTAA
TAGGGCATACCGGTCTGATCAATTGATCATGTTTTTC-TACACAGATGGCCGCGTGACAGGGCATGGAGCATCAGCCGGA
GTGGTAGCTGGTGCGAACTGCGAACCACCACTCAAAACCTCACTCGCACTTTCGATTATCTGAAGAAACAATTTCATTAA
TTTTGGCCATTTCTGTTATGCAGCAACCGTCGTGTTCTCAATTTCGGCAGCTATCGGCATCGGGGGGCTCGTGATGTACA
TACGCAAGTTGAGATCGAGCAAAGTGGTCACCTGCGGCGTCCAGAGTAACGAAAATAGATTCTTCTGA------------
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>chr7D_1_TraesCS7D01G343900
GTGGGCCAGGAGCGAGGCCCATTGGTCCCGGTTCGTGGCTGTAACCGGGACAAAAGGGTCCAGACGAACCGGGACCAATG
CCCCACGAGGCCCGGCCAGCCCCCTGGGCTCACGAACTGGGACGTATGCCCCATGGGTCCCGGTTCATGACTGAACCGGA
ACTAATGAGCTGGCCAGGCCTGGACCAAAGCCCTGTTTTCTACTAGTGATATATGGCCCCCCTTAGTTTTTTCCCATCTC
TGATTTTCTTCCAAATAGAATATTCTTTTGTAAGTCAATGAATTCTTATCAAATAAGTGCTTAACATTAAGATGACATTT
TCCCTCCCATCTCCAATATTTCTTCCAAATAATACTTCCTCCGTTCCTAAATATAAGTCTTTTTAAAGATTCCACTATGA
ACTACATACGGAGCAAAATGAGTGAATCTACACTCAAAATACGTCTACGTACATCCATATGTACTCGTTTGTAATGGAAT
CTCTAAAAAGACTTATATTTAGGAACGGAGGGAGTAATTTTTTGGTGAGTCAATATATTCTCATCTAGGTTTTGTTGAGT
TACAAAAGAAAAATATATGCTTTGTTGAGGCTCAACCTCCAAACAGTGTCCGCATCACCTCGAGCTTCACGATGGGAACG
TTGCACCATGGACCAACAGATTGAGGGTGTTTCCGAACTTCCCATCAAACTAAAAACTACGAGAAGAGAGCGAATCCCGC
GTATGCCTTGCTTTGGCGATACTTAGCCGACCGAGGAGGCAAGCACACTGGATTAGATTCCGGAAACGGGTTAAAGAAGA
CACTAATATGCCCCCAGCAAAGCAAAAGCTCAGAGGCTCCTCAAAGCGAAAGTG--AAAAAAGCCCAACCACAAGCGAGC
TAACAACAACCACTCTTTAGCTTTTTCTCCATTGTTGTTGAGGCAAAGAAAGAAGCTA--AGCTGAGCTCTCATATCCTT
GCTCGCCATCGCACATTTGCACAGCGTCACTCAACTCCAGTGATATGGAGATGCGTCTCCACCTCCATGCGTTGGCGATC
CTTCTGGTCGTCTCGGCGCGGCCTACGTCCGTCGCCGGCGGGCTGTGCCGCGACAGCTGCGGCGACGTCCCGGTGCGCTA
CCCGCTGGGCATCGACGACGGCTGCGGCAGCCCGTATTACCGCAACATGCTGACCTGCGCCGACAACACCACGCTCCGCC
TCCGCACCCCGTCCGGCACGTACCCGGTGTCCGGCGCCGACTACGCGGACCCGCACCTGGTGGTGACGGACCCGTCCATG
TGGACGTGCGCGCGGCCCTTCACCTCCGTCCACGCCGCGCCCTTCAGCCTGGACACCAGCACCCGCTTCTCGCTGTCCCC
GAGGAACGACCACCTCTTCTTCAACTGCGACGAGGAGCGCGTCATCGTGGCGCCGCGGCCGGCCATCTGCGACCGGTACC
CGGACCGGTGCGACTCGGCGTGCGACAGCGCCGGGTACCTGTGCCGGAACCTGCCGGGCTGCCGCGGCGCGCTGGAGGAA
GGGAACATGAGCTGCTGCGCGTACAGGCCCCGCGCGGCGGAGTCGCTGAGGGCCATGCTGCGGCACTGCGAGGCCTACAC
CACCGTGTACTGGCGCGCGGTGGGCGACAAGTTCCCGCCCTACGACCAGGTGCCGGACTACGGGGTCCGGGTGGACTTCG
AGATCCCCGTCACCACGCGGTGCCTGCAGTGCCAGGACCGGCGCCGCGGCGCCAACGGCACCTGCGGCTTCGACCCCGCC
ACCAGGGACTTCGTCTGCATCTGCGACGGCGGCCGGAACTCCACCACGGACTGTGCAGGTGCGCTCTCTCTGCCTCTGCT
CTGGCTCTCGGTTTTGTTTGGTAGTAATTGCATTCGGAGACG-----TTCAACTAAAAAGCATAGGATTTGATGAGACTT
CAGAGGTTACGAA------TTCTCAATGCTAGGATCTGCATAAAACCAAAATTATGCATCAATTGACCATGTTTCTTTAA
TAGGGCATACCGGTCTGATCAATTGATCATGTTTTTC-TACACAGATGGCCGCGTGACAGGGCATGGAGCATCAGCCGGA
GTGGTAGCTGGTGCGAACTGCGAACCACCACTCAAAACCTCACTCGCACTTTCGATTATCTGAAGAAACAATTTCATTAA
TTTTGGCCATTTCTGTTATGCAGCAACCGTCGTGTTCTCAATTTCGGCAGCTATCGGCATCGGGGGGCTCGTGATGTACA
TACGCAAGTTGAGATCGAGCAAAGTGGTCACCTGCGGCGTCCAGAGTAACGAAAATAGATTCTTCTGAGCCGACCTCAAA
GAATTCCCATGAACAGTCTTCCGCATGTGCAAAGAAGAAAGGAGGGTATGGACCCACGTCAGATGGAGAGGGTTCCGGTG
TATACAACACGAAGCCTTGAGATATTTTTTTCTTGTAGTTTTGGGCGATATGTATGATGCATATGATGGGCATGCAGACC
GTACTACAT-T-CAAAGATAACGAGGGCGGCATACTCAGGTGAACAAAAGAT----ATGTGCGAGTGCATTGCCGCCGAA
TTTACATGTTGTGGTAGCTTGTAACCAGCGAGGCGTCTGTGGTGACTTTGCTAATTAATTTTTTAGCACAACAACTTCAT
TCTCTTGTCGGGAGTCATGCTTGCGAGTGAATTAGTCTTTGTTGCAACGTGTCA----------------AAGGATAGAA
AACATGGTTCTCAACCACCCATACACTCTAGAATCAGTGTCAAAAGTATGCAACGAATGTGATATGCAAGATTTCTAATT
AAATGAAATGCTTCTCACTCATTGCACGACGTGACACAAGGAGAATGTCAATAACACGATAAAGACGTGAAACTT----T
AGACATACAAGTAACGAATGAGAGGGGATAACAAGTGCACTAGTAGATTCATTATTACAACCAACCATTGTACAAAAGAT
TAGGTGTTGGTTATCTATAGTGTTAAAACTCAAGTTGTCCATGACAGTGGACAGAAATATTCAAGTAGATTATACACTCC
GTGGAGATGCGTGATTTTACCCGCATGGCATGGTTCCTTCATGGGTTGAGACACGCCTACCCCCATGTTGGAAATATGCC
CTAGAGGCAATAATATTGTATTACTATGTTTTAATGTTTATAATTAGGAGTTTCTGTTTCATTCTATAACTGCTATGATC
CTAGAATATGCGATTCAGTGAAAAACTCATATGCACATGCTAAATGATAAACGATAAATAATAGGTTCCTAGTCTTTCCT
CTAAGACTAGCTCAAGTGTTGTTAGTGATCATGTTTTCCGGATCGCAGGATATC
>chr7B_669
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----------------------------GTTTCCGAACTTCCGGCCAATCTAAAAACTATGAGAAGAGAGCGAATCCCGC
GTATGCCTTGCTTTGGTGATACTTAGCCGACCGAGGAGGCAAGCACACTGGATTAGATTCCGGAAATGGGTTAAAGAAGA
CACTAATATGCCCCCAGCAAAGCAAAAGCTCAGAAGCTC---AAAGCGAAAGTGAAATAAAAGCCCGACCACGAGCGAGC
TAACAACCACCACTCTTTAGCTTTTTCTCCA---TTGTTGAGGCAAAGAAAGAAGCTA--AGCTCTCAG----TATCCTT
GCTTGCCATCGCACATTTGCACAGCGTCACTCAACTCCAGTGATATGGAGACGCGTCTCCACCTCCATGCGTTGGCGATC
CTTCTGGTCGTCTCGGCGCGGCCTCCCTCCGTCGCCGGCGGGCTCTGCCGCGACAGCTGCGGCGACGTCCCGGTGCGCTA
CCCGCTGGGCATCGACGACGGGTGCGGCAGCCCGTACTACCGCAACATGCTGACCTGCGCCGACAACACCACGCTCCGCC
TCCGCACCCCGTCCGGCACGTACCCGGTGTCCGGCGCCGACTACGCGGACCCGCACCTGGTGGTGACGGACCCGTCCATG
TGGACGTGCGCGCGGCCCTTCACCTCCGTCCACGCCGCGCCCTTCAGCCTGGACACCAGCACCCGCTTCTCGCTGTCCCC
GAGGAACGACCACCTCTTCTTCAACTGCGACGAGGAGCGCGTCATCGTGGCGCCGCGGCCGGCGATCTGCGACCGGTACC
CGGACCGGTGCGACTCGGCGTGCGACAGCGCCGGGTACCTGTGCCGGAACCTGCCGGGCTGCCGCGGCGCGCTGGAGGAA
GGGAACATGAGCTGCTGCGCGTACCGGCCCCGCGCGGCGGAGTCGCTCAGGGCCATGCTGCGGCACTGCGAGGCCTACAC
CACCGTGTACTGGCGCGCGGTGGGCGACAAGTTCCCGCCCTACGACCAGGTGCCGGACTACGGGGTCCGGGTGGACTTCG
AGATCCCGGTCACCACGCGATGCCTACTGTGCCAGGACCGGCGCCGCGGCGCCAACGGCACCTGCGGCTTCGACCCCGCC
ACCAGGGACTTCGTCTGCATCTGCGACGGCGGCCGGAACTCCACCACGGACTGTGCAGGTGCGCTCTCTCTGCTCTGGCT
CCGGCTCTCGTTTTTGTTCGATA---ACTGCATTTCGACACGTTCAATTCAACTAAAAAGCATATGATTTGATGAAACTT
CAGAGGTTAACTACTGTAGTTCTCAACGCCAGGATCTGCATAAAACAGAAATTATGCAT---------------------
---GTCAAACTAATCTGTTCAATTGATCGTGTTTTTTTTACACAGATGGCCGCGTGACAGGGCATGGAGCATCAGCCGGA
GTGGTAGCTGGTGCGAACTGCGAACCACCACTCAAAACCTCACTCGCACTTTCCATTACTTGAAGTAACAATATCGTTAA
TTGTGGCCATTTCTGTTATGCAGCAACCGTCGTGTTCTCAATTTCGGCAGCTATCGGCATCGGGGGGCTCGTGATGTACA
TACGCAAGCTGAGATCGAGCAAAGTGGTCACCTGCGGCGTCCAGAGTAACGAAAATAGATTCTTCTGAGCCGACCTCAGA
GAACTCCCATGAACAGTCTTCCGCGTGTGCAAAGAAGAAAGGAGGGTATGGACCCACGTCAGATGGAGAGGGTTCCGGTG
TATACAACACGAAGCCTTGAGATAT-TTTTTCTTGTAGTTTTGGGCGATATGTATTATGCATATGATGGGCATGCAGACC
GTACTACAT-TTCAAACATAACGAGGGCGGCATACTCAGGTGAACAAAAGAT----ATGTGCGAGTGCATTGCCGCCGAA
TTTACATGTTGTGGTAGCTTGTAACCAGCAAGGCGTCTGTGGTGACTTTGTTAATTAATTTTTTAGCACGACAACTTCAT
TCTCTTGTCAGGAGTCATGCTTGTGAGTGAATTAGTCTTTGTTGCAACGTGTCA----------------AAGGATAGAA
AACATGGTTCTCAACCACCCATACACTCTAGAATCAGTGTCAAAAGTATGCAACGAATGTGATATGCAAGATTTCTAATT
AAATGAAATGCTTCTCACTCATTGCACGACGTGGCACAAGGAGAATGTCAATAACACGATAAGGATGTGAAACTT----T
GGACATCCAAGTAACGAATGGGAGGGGATAACAAGTGCACTAGTAGGTTCATCATTACAACCAACCATTGTACAAAAGCT
TAGGTGTTGGTTATCTATAGTGTTAAAGCTCAAGTTGTCCATGACAGTGGACAGAAATATTCAAGTAGATTATACACTCC
GTAGAAATGTGTGATTTTACCCGTAGGGCATGGTTCCTTCGTGGGTTGAGACATGCTTACCCCTATGTTGTAAATATGTC
ATAGAGGCAATAATATTGTATTATTATATTTCAGTGGTTATAATTAAGAGTTTCTGTTTCATGCTATAACTGCTATGATC
CTGAAATATGCGATTCAGTTGAAAATTCATGTGCACGTGTTGAATGATAAACGGTAAATAATAGGTTCCTAGTCCTGCCT
CTAAGACTAGCTCAAGTGTTGTTGGTGATCATGTTTTCCGGATTGTAGGATATC
>chr7A_691
TAAT----------------------------------------------------------------------------
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-----------------------------------------------------AAACTATGAGAAGAGAGCGAATCCCGC
GTATGCTTTGCTTTGGTGATACTTAGCCGACCGAGGAGGCAAGCACACTGGATTAGATTCCGGAAACGGGTTAAAGAAGG
CACTAATATGCCCCAAGCAAAGCAAAAGGTGAGAGGCTC---AAAGCCAAAGTGAAAAAAAAGCCCAACCACAAGCGAGC
TAACAACCATCACTCTTTAGCCTTTTCTCCA---TTGTTGAGGCAAAGAAAGAAGCTAGTAGTTCTCAG----TATCA--
--TTGCCATCGCACATTTGCACTGCGTCACTCAACTCCAGTGACATGGAGATGCGTCTCCACCTCCATGTGCTGGCGATC
CTCGTGATCATCTCGGCGCGGCCTCCCTCCGTCGCTGGCGGGCTCTGCCGCGACAGCTGCGGCGACGTCCCGGTGCGCTA
CCCGCTGGGCATCGACGACGGCTGCGGCAGCCCGTACTACCGCAGCATGCTGACCTGCGCCGACAACACCACGCTCCGCC
TCCGCACCCCATCCGGCACGTACCCGGTGTCCGGCGCCGACTACGCGGACCCGCACCTGGTGGTGACGGACCCGTCCATG
TGGACCTGCGCGCGGCCCTTCACCGCCGTCCACGCCGCGCCCTTCAGCCTGGACACCAGCACCCGCTTCTCGCTGTCCCC
GAGGAACGACCACCTCTTCTTCAACTGCGACGAGGAGCGGGTCATCGTGGCGCCGCGGCCGGCCATCTGCGACCGGTACC
CGGACCGGTGCGACTCGGCGTGCGACAGCGCCGGGTACCTGTGCCGGAACCTGCCGGGCTGCCGCGGCGCGCTGGAGGAA
GGCAACATGAGCTGCTGCGCGTACCGGCCCCGCGCGGCGGAGTCGCTGAGGGCCATGCTGCGGCACTGCGAGGCCTACAC
CACCGTGTACTGGCGCGCGGTGGGCGACAAGTTCCCGCCCTACGACCAGGTGCCGGACTACGGCGTCCGGGTGGACTTCG
AGATCCCCGTCACCACGCGGTGCCTGCAGTGCCAGGACCGGCGCCGCGGCGCCAACGGCACCTGCGGCTTCGACCCCGCC
ACCAGGGACTTCGTCTGCATCTGCGACGGCGGCCGGAACTCCACCACGGACTGTGCAGGTGCGCCCTCTCTGCTCTGGCT
CTCTTTG----------------GTAACTGCATTTGGAGACG-----TTCAATTTAAAAGCATAGGTTTCTGT-------
-----------AA------TTCTCAACGCCAGGATCTGCGTAAAACCAAAATTATGCGTGCCAAACCCCGACT--TTTAA
TGGGGCATACCGGCCTGACCAATTGATCATGTTTTCA-TACACAGATGGCCGCGTCACAGGGCATGGAGCATCAGCCGGA
GTTGTAGCTGGTGCGAACTGAGAACCACTACCAAAAACCTCACTCGCACTTTCGATTATTTGAAGAAGCAATTTCGTTAA
TTCTGGCCATTTTTGCTATGCAGCAACCGTCGTGTTCTCAATTTCGGCAGCGATCGGCATCGGGGGGCTCGTGATGTACA
TACGCAAGATGAGATCGAGCAAAGTGGTCACCTGCGGCGTCCAGAGTAACGAAAACAGATTCTTCTGAGCCGACCTCAAA
GAATTCCCATGAACAGTCTTCCGCATGTGCAAAGAAGAGAGGAGGGTATGGACCCACGTCCGATGGAGAGGGTTCCGGTG
TATACAACACGAAGGCTTGAGATA--TTTTTCTTGTAGTTTTGGGCGATATGTATGATGCATATGATGGGCATGCACACC
GTACTATACATTCAAACATAACGAGGGCGGCATACTCAGATGAACAAAAGATAGCTATGTGTGAGTGCATTGCCGACGAA
TTTACATTCTGTGATAGCTTGTAACCAGCGAGGCATCTGTGGTGACTTTGCTAATTAATTTTCTAGCACGACAACTTCAG
TCTCTAGTCGGGAGTCATGCTTGCAAGTGAATTAGTCTTTGTTGGGATGTGTCAAAGGAGAGTCTCTGCCAAGAATAGAA
AACATGGTTCTCAACCACCCATACGCTTTAGAATCAGTGTCAAAAGTATGCAACGGATGTGATATGCAAGATTTCTAATT
AAA-GAAATGCTTCTCACTCATTGCACGGTGTGACACAAGGAGAATGTCAGTAACACGATAAAGATGTGAAACTTAAAGT
AGGCATCCAAGTAACGAATGGGAGGGGATAACAAGTGAACTAGTAGATTCATTATTACAACCAACCATTGTACAAATGCT
TAGGTGTTGGTTATCTATAGTGTTAAAGGTCGAGTTGTCCATGACAGTGGACAAAAATATTCAAGTAGATTATACACTCT
GTGGAGATGCGTGATTTTACCCGTAGGGCATGGTTCCTTCGTGTGTTGAGACATGCCTACCC------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------SSS---S----------S--------------------
----------------S---------------------------------------------------------------
---------------------------------------SSS--------------------------------------
-------S-----------------------SSS------------------------------SSSSSSSSS-------
---S----------------------------------------------------------------------------
------------------------S-S-----------------S-----------------------------------
------------------------------------S-------------------------------------------
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------------------------S-------------------------------------------------------
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-------------------------------------------------------------------------SSSS---
----------S-------S-S------S------S----------------------------------------S----
---------SS---------------S--S-----------------------------SSSSSSS--SSSS-SS-----
-S----------------------------------S-------------------------------------------
-----------------------------------------------------------S---------------S----
--S-----------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
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-------------------------S------------------------------------------------------
----------------S---------------------------------------------------------------
---------------------------------------------------------------------S----------
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-----------------------------------------------------------------S--------------
------S-------------S---------------------------------------------------------S-
---------------------------S----------------------------------------------------
-----------------------S-S--------------S------------S---------S------S-------S-
S----------------------S---S---S-S--S---------S---------------S-----------------
--SS---------------SS----S----S-----S--S-S-----------S--------------------S-S---
-----------------------S-------------------S-S--------
>forward_642
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--------------------------------------------------------------AGCTTCACGATGGGAACG
TT------------------------------------------------------------------------------
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>reverse_2497
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----------------GATAACGAGGGCGGCATACT--------------------------------------------
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