Multiple sequence alignment - TraesCS7D01G329800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G329800 chr7D 100.000 2648 0 0 1 2648 421448369 421445722 0.000000e+00 4891.0
1 TraesCS7D01G329800 chr7D 77.128 188 36 7 492 675 519274658 519274474 4.660000e-18 102.0
2 TraesCS7D01G329800 chr7A 93.096 1434 74 10 576 2005 511545106 511546518 0.000000e+00 2076.0
3 TraesCS7D01G329800 chr7A 83.385 650 55 15 2010 2648 511550835 511551442 1.070000e-153 553.0
4 TraesCS7D01G329800 chr7A 97.778 45 1 0 318 362 252191153 252191197 7.860000e-11 78.7
5 TraesCS7D01G329800 chr7B 91.498 1282 64 17 735 2005 437725706 437724459 0.000000e+00 1722.0
6 TraesCS7D01G329800 chr7B 86.329 651 64 12 2010 2648 437723377 437722740 0.000000e+00 686.0
7 TraesCS7D01G329800 chr7B 80.519 308 58 2 356 661 120724326 120724019 4.410000e-58 235.0
8 TraesCS7D01G329800 chr1A 79.811 317 56 8 360 673 380261012 380260701 9.540000e-55 224.0
9 TraesCS7D01G329800 chr2A 81.423 253 42 5 360 609 144853363 144853113 4.470000e-48 202.0
10 TraesCS7D01G329800 chr2A 77.863 262 54 4 415 675 724023541 724023283 2.730000e-35 159.0
11 TraesCS7D01G329800 chr2A 77.512 209 32 13 372 571 765240130 765239928 7.750000e-21 111.0
12 TraesCS7D01G329800 chr2A 97.826 46 1 0 317 362 471257608 471257653 2.180000e-11 80.5
13 TraesCS7D01G329800 chr5B 80.237 253 47 3 415 665 526232692 526232441 1.250000e-43 187.0
14 TraesCS7D01G329800 chr3A 80.658 243 37 8 360 597 174277442 174277679 2.090000e-41 180.0
15 TraesCS7D01G329800 chr3A 77.027 296 61 6 356 647 326555026 326554734 2.110000e-36 163.0
16 TraesCS7D01G329800 chr3A 78.453 181 37 2 491 669 544428052 544428232 1.670000e-22 117.0
17 TraesCS7D01G329800 chr5D 79.008 262 51 4 415 674 141425490 141425231 2.710000e-40 176.0
18 TraesCS7D01G329800 chr5D 81.448 221 35 4 372 588 497856569 497856351 2.710000e-40 176.0
19 TraesCS7D01G329800 chr5D 77.717 184 37 4 492 673 532757614 532757433 2.790000e-20 110.0
20 TraesCS7D01G329800 chr5D 100.000 45 0 0 318 362 218853941 218853985 1.690000e-12 84.2
21 TraesCS7D01G329800 chr5D 100.000 45 0 0 318 362 308026715 308026759 1.690000e-12 84.2
22 TraesCS7D01G329800 chr2B 77.099 262 55 5 415 673 107567542 107567283 2.120000e-31 147.0
23 TraesCS7D01G329800 chr3D 76.471 255 58 2 416 669 13414909 13414656 1.280000e-28 137.0
24 TraesCS7D01G329800 chr6B 97.778 45 1 0 318 362 202588062 202588106 7.860000e-11 78.7
25 TraesCS7D01G329800 chr1B 97.778 45 1 0 318 362 600914788 600914744 7.860000e-11 78.7
26 TraesCS7D01G329800 chr6D 97.727 44 1 0 319 362 1427350 1427307 2.830000e-10 76.8
27 TraesCS7D01G329800 chr6D 88.710 62 4 2 304 362 35516966 35517027 3.660000e-09 73.1
28 TraesCS7D01G329800 chr4A 97.727 44 1 0 318 361 550144023 550144066 2.830000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G329800 chr7D 421445722 421448369 2647 True 4891 4891 100.0000 1 2648 1 chr7D.!!$R1 2647
1 TraesCS7D01G329800 chr7A 511545106 511546518 1412 False 2076 2076 93.0960 576 2005 1 chr7A.!!$F2 1429
2 TraesCS7D01G329800 chr7A 511550835 511551442 607 False 553 553 83.3850 2010 2648 1 chr7A.!!$F3 638
3 TraesCS7D01G329800 chr7B 437722740 437725706 2966 True 1204 1722 88.9135 735 2648 2 chr7B.!!$R2 1913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 439 0.036671 GTGAGTAGGGTTTGGTCCGG 60.037 60.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 3165 0.249911 ACACCAACTGACTCGCCTTC 60.25 55.0 0.0 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.965045 TGTTTTATGGTGTTTGTTAAAGTTGC 58.035 30.769 0.00 0.00 0.00 4.17
30 31 7.819900 TGTTTTATGGTGTTTGTTAAAGTTGCT 59.180 29.630 0.00 0.00 0.00 3.91
31 32 7.995463 TTTATGGTGTTTGTTAAAGTTGCTC 57.005 32.000 0.00 0.00 0.00 4.26
32 33 4.022464 TGGTGTTTGTTAAAGTTGCTCG 57.978 40.909 0.00 0.00 0.00 5.03
33 34 3.440872 TGGTGTTTGTTAAAGTTGCTCGT 59.559 39.130 0.00 0.00 0.00 4.18
34 35 4.634883 TGGTGTTTGTTAAAGTTGCTCGTA 59.365 37.500 0.00 0.00 0.00 3.43
35 36 5.297278 TGGTGTTTGTTAAAGTTGCTCGTAT 59.703 36.000 0.00 0.00 0.00 3.06
36 37 6.183360 TGGTGTTTGTTAAAGTTGCTCGTATT 60.183 34.615 0.00 0.00 0.00 1.89
37 38 6.693978 GGTGTTTGTTAAAGTTGCTCGTATTT 59.306 34.615 0.00 0.00 0.00 1.40
38 39 7.221259 GGTGTTTGTTAAAGTTGCTCGTATTTT 59.779 33.333 0.00 0.00 0.00 1.82
39 40 8.588789 GTGTTTGTTAAAGTTGCTCGTATTTTT 58.411 29.630 0.00 0.00 0.00 1.94
58 59 3.410631 TTTTACAACGGAGGCTCATGA 57.589 42.857 17.69 0.00 0.00 3.07
59 60 2.380084 TTACAACGGAGGCTCATGAC 57.620 50.000 17.69 0.00 0.00 3.06
60 61 0.172578 TACAACGGAGGCTCATGACG 59.827 55.000 17.69 12.82 0.00 4.35
61 62 1.079819 CAACGGAGGCTCATGACGT 60.080 57.895 17.69 13.50 39.74 4.34
62 63 1.078759 CAACGGAGGCTCATGACGTC 61.079 60.000 17.69 9.11 36.69 4.34
63 64 2.105128 CGGAGGCTCATGACGTCC 59.895 66.667 17.69 18.96 38.45 4.79
64 65 2.105128 GGAGGCTCATGACGTCCG 59.895 66.667 17.69 4.26 32.87 4.79
65 66 2.583593 GAGGCTCATGACGTCCGC 60.584 66.667 14.12 10.13 0.00 5.54
66 67 3.356639 GAGGCTCATGACGTCCGCA 62.357 63.158 14.12 0.00 0.00 5.69
67 68 2.434185 GGCTCATGACGTCCGCAA 60.434 61.111 14.12 0.00 0.00 4.85
68 69 2.740714 GGCTCATGACGTCCGCAAC 61.741 63.158 14.12 0.00 0.00 4.17
69 70 2.027073 GCTCATGACGTCCGCAACA 61.027 57.895 14.12 0.00 0.00 3.33
70 71 1.565156 GCTCATGACGTCCGCAACAA 61.565 55.000 14.12 0.00 0.00 2.83
71 72 0.865111 CTCATGACGTCCGCAACAAA 59.135 50.000 14.12 0.00 0.00 2.83
72 73 0.865111 TCATGACGTCCGCAACAAAG 59.135 50.000 14.12 0.00 0.00 2.77
73 74 0.725784 CATGACGTCCGCAACAAAGC 60.726 55.000 14.12 0.00 0.00 3.51
74 75 1.852067 ATGACGTCCGCAACAAAGCC 61.852 55.000 14.12 0.00 0.00 4.35
75 76 2.515057 ACGTCCGCAACAAAGCCA 60.515 55.556 0.00 0.00 0.00 4.75
76 77 2.054140 GACGTCCGCAACAAAGCCAA 62.054 55.000 3.51 0.00 0.00 4.52
77 78 1.657181 CGTCCGCAACAAAGCCAAC 60.657 57.895 0.00 0.00 0.00 3.77
78 79 1.435515 GTCCGCAACAAAGCCAACA 59.564 52.632 0.00 0.00 0.00 3.33
79 80 0.179124 GTCCGCAACAAAGCCAACAA 60.179 50.000 0.00 0.00 0.00 2.83
80 81 0.179124 TCCGCAACAAAGCCAACAAC 60.179 50.000 0.00 0.00 0.00 3.32
81 82 1.151172 CCGCAACAAAGCCAACAACC 61.151 55.000 0.00 0.00 0.00 3.77
82 83 1.478622 CGCAACAAAGCCAACAACCG 61.479 55.000 0.00 0.00 0.00 4.44
83 84 1.151172 GCAACAAAGCCAACAACCGG 61.151 55.000 0.00 0.00 0.00 5.28
84 85 0.457851 CAACAAAGCCAACAACCGGA 59.542 50.000 9.46 0.00 0.00 5.14
85 86 1.068434 CAACAAAGCCAACAACCGGAT 59.932 47.619 9.46 0.00 0.00 4.18
86 87 0.958822 ACAAAGCCAACAACCGGATC 59.041 50.000 9.46 0.00 0.00 3.36
87 88 0.109781 CAAAGCCAACAACCGGATCG 60.110 55.000 9.46 0.00 0.00 3.69
88 89 0.250553 AAAGCCAACAACCGGATCGA 60.251 50.000 9.46 0.00 0.00 3.59
89 90 0.250553 AAGCCAACAACCGGATCGAA 60.251 50.000 9.46 0.00 0.00 3.71
90 91 0.250553 AGCCAACAACCGGATCGAAA 60.251 50.000 9.46 0.00 0.00 3.46
91 92 0.808755 GCCAACAACCGGATCGAAAT 59.191 50.000 9.46 0.00 0.00 2.17
92 93 1.201414 GCCAACAACCGGATCGAAATT 59.799 47.619 9.46 0.00 0.00 1.82
93 94 2.420722 GCCAACAACCGGATCGAAATTA 59.579 45.455 9.46 0.00 0.00 1.40
94 95 3.729762 GCCAACAACCGGATCGAAATTAC 60.730 47.826 9.46 0.00 0.00 1.89
95 96 3.437395 CCAACAACCGGATCGAAATTACA 59.563 43.478 9.46 0.00 0.00 2.41
96 97 4.436852 CCAACAACCGGATCGAAATTACAG 60.437 45.833 9.46 0.00 0.00 2.74
97 98 3.934068 ACAACCGGATCGAAATTACAGT 58.066 40.909 9.46 0.00 0.00 3.55
98 99 3.682858 ACAACCGGATCGAAATTACAGTG 59.317 43.478 9.46 0.00 0.00 3.66
99 100 3.880047 ACCGGATCGAAATTACAGTGA 57.120 42.857 9.46 0.00 0.00 3.41
100 101 3.782046 ACCGGATCGAAATTACAGTGAG 58.218 45.455 9.46 0.00 0.00 3.51
101 102 2.540101 CCGGATCGAAATTACAGTGAGC 59.460 50.000 0.00 0.00 0.00 4.26
102 103 3.186909 CGGATCGAAATTACAGTGAGCA 58.813 45.455 0.00 0.00 0.00 4.26
103 104 3.616821 CGGATCGAAATTACAGTGAGCAA 59.383 43.478 0.00 0.00 0.00 3.91
104 105 4.492570 CGGATCGAAATTACAGTGAGCAAC 60.493 45.833 0.00 0.00 0.00 4.17
105 106 4.391830 GGATCGAAATTACAGTGAGCAACA 59.608 41.667 0.00 0.00 0.00 3.33
106 107 5.106712 GGATCGAAATTACAGTGAGCAACAA 60.107 40.000 0.00 0.00 0.00 2.83
107 108 5.743026 TCGAAATTACAGTGAGCAACAAA 57.257 34.783 0.00 0.00 0.00 2.83
108 109 5.747565 TCGAAATTACAGTGAGCAACAAAG 58.252 37.500 0.00 0.00 0.00 2.77
109 110 4.911610 CGAAATTACAGTGAGCAACAAAGG 59.088 41.667 0.00 0.00 0.00 3.11
110 111 5.277779 CGAAATTACAGTGAGCAACAAAGGA 60.278 40.000 0.00 0.00 0.00 3.36
111 112 5.695851 AATTACAGTGAGCAACAAAGGAG 57.304 39.130 0.00 0.00 0.00 3.69
112 113 4.415881 TTACAGTGAGCAACAAAGGAGA 57.584 40.909 0.00 0.00 0.00 3.71
113 114 2.843701 ACAGTGAGCAACAAAGGAGAG 58.156 47.619 0.00 0.00 0.00 3.20
114 115 2.149578 CAGTGAGCAACAAAGGAGAGG 58.850 52.381 0.00 0.00 0.00 3.69
115 116 0.877743 GTGAGCAACAAAGGAGAGGC 59.122 55.000 0.00 0.00 0.00 4.70
116 117 0.603707 TGAGCAACAAAGGAGAGGCG 60.604 55.000 0.00 0.00 0.00 5.52
117 118 0.320771 GAGCAACAAAGGAGAGGCGA 60.321 55.000 0.00 0.00 0.00 5.54
118 119 0.326264 AGCAACAAAGGAGAGGCGAT 59.674 50.000 0.00 0.00 0.00 4.58
119 120 1.555075 AGCAACAAAGGAGAGGCGATA 59.445 47.619 0.00 0.00 0.00 2.92
120 121 2.027192 AGCAACAAAGGAGAGGCGATAA 60.027 45.455 0.00 0.00 0.00 1.75
121 122 2.096013 GCAACAAAGGAGAGGCGATAAC 59.904 50.000 0.00 0.00 0.00 1.89
122 123 2.295253 ACAAAGGAGAGGCGATAACG 57.705 50.000 0.00 0.00 42.93 3.18
123 124 1.822990 ACAAAGGAGAGGCGATAACGA 59.177 47.619 0.00 0.00 42.66 3.85
131 132 4.612653 GCGATAACGACAGCGCGC 62.613 66.667 26.66 26.66 42.48 6.86
132 133 3.244603 CGATAACGACAGCGCGCA 61.245 61.111 35.10 11.28 42.48 6.09
133 134 2.576893 CGATAACGACAGCGCGCAT 61.577 57.895 35.10 21.72 42.48 4.73
134 135 1.636340 GATAACGACAGCGCGCATT 59.364 52.632 35.10 20.00 42.48 3.56
135 136 0.381909 GATAACGACAGCGCGCATTC 60.382 55.000 35.10 26.01 42.48 2.67
136 137 2.077801 ATAACGACAGCGCGCATTCG 62.078 55.000 37.09 37.09 42.48 3.34
145 146 4.581648 GCGCATTCGGCTCGCTTC 62.582 66.667 0.30 0.00 44.79 3.86
146 147 3.188100 CGCATTCGGCTCGCTTCA 61.188 61.111 0.00 0.00 41.67 3.02
147 148 2.705826 GCATTCGGCTCGCTTCAG 59.294 61.111 0.00 0.00 40.25 3.02
148 149 2.103042 GCATTCGGCTCGCTTCAGT 61.103 57.895 0.00 0.00 40.25 3.41
149 150 1.712081 CATTCGGCTCGCTTCAGTG 59.288 57.895 0.00 0.00 0.00 3.66
150 151 1.016130 CATTCGGCTCGCTTCAGTGT 61.016 55.000 0.00 0.00 0.00 3.55
151 152 0.530744 ATTCGGCTCGCTTCAGTGTA 59.469 50.000 0.00 0.00 0.00 2.90
152 153 0.109272 TTCGGCTCGCTTCAGTGTAG 60.109 55.000 0.00 0.00 0.00 2.74
153 154 1.213013 CGGCTCGCTTCAGTGTAGT 59.787 57.895 0.00 0.00 0.00 2.73
154 155 0.798771 CGGCTCGCTTCAGTGTAGTC 60.799 60.000 0.00 0.00 0.00 2.59
155 156 0.798771 GGCTCGCTTCAGTGTAGTCG 60.799 60.000 0.00 3.48 0.00 4.18
156 157 0.109689 GCTCGCTTCAGTGTAGTCGT 60.110 55.000 11.21 0.00 0.00 4.34
157 158 1.884756 CTCGCTTCAGTGTAGTCGTC 58.115 55.000 11.21 0.00 0.00 4.20
158 159 0.165295 TCGCTTCAGTGTAGTCGTCG 59.835 55.000 11.21 0.00 0.00 5.12
159 160 0.110328 CGCTTCAGTGTAGTCGTCGT 60.110 55.000 0.00 0.00 0.00 4.34
160 161 1.662309 CGCTTCAGTGTAGTCGTCGTT 60.662 52.381 0.00 0.00 0.00 3.85
161 162 2.411935 CGCTTCAGTGTAGTCGTCGTTA 60.412 50.000 0.00 0.00 0.00 3.18
162 163 3.162068 GCTTCAGTGTAGTCGTCGTTAG 58.838 50.000 0.00 0.00 0.00 2.34
163 164 3.744987 CTTCAGTGTAGTCGTCGTTAGG 58.255 50.000 0.00 0.00 0.00 2.69
164 165 2.771089 TCAGTGTAGTCGTCGTTAGGT 58.229 47.619 0.00 0.00 0.00 3.08
165 166 3.925379 TCAGTGTAGTCGTCGTTAGGTA 58.075 45.455 0.00 0.00 0.00 3.08
166 167 3.928992 TCAGTGTAGTCGTCGTTAGGTAG 59.071 47.826 0.00 0.00 0.00 3.18
167 168 3.681897 CAGTGTAGTCGTCGTTAGGTAGT 59.318 47.826 0.00 0.00 0.00 2.73
168 169 3.929610 AGTGTAGTCGTCGTTAGGTAGTC 59.070 47.826 0.00 0.00 0.00 2.59
169 170 3.929610 GTGTAGTCGTCGTTAGGTAGTCT 59.070 47.826 0.00 0.00 0.00 3.24
170 171 5.103000 GTGTAGTCGTCGTTAGGTAGTCTA 58.897 45.833 0.00 0.00 0.00 2.59
171 172 5.004916 GTGTAGTCGTCGTTAGGTAGTCTAC 59.995 48.000 0.95 0.95 0.00 2.59
172 173 3.182967 AGTCGTCGTTAGGTAGTCTACG 58.817 50.000 3.92 0.00 0.00 3.51
173 174 2.282820 GTCGTCGTTAGGTAGTCTACGG 59.717 54.545 3.92 0.00 0.00 4.02
174 175 2.165641 TCGTCGTTAGGTAGTCTACGGA 59.834 50.000 3.92 0.00 0.00 4.69
175 176 3.126831 CGTCGTTAGGTAGTCTACGGAT 58.873 50.000 3.92 0.00 0.00 4.18
176 177 3.183373 CGTCGTTAGGTAGTCTACGGATC 59.817 52.174 3.92 0.00 0.00 3.36
177 178 4.376146 GTCGTTAGGTAGTCTACGGATCT 58.624 47.826 3.92 0.00 0.00 2.75
178 179 4.210955 GTCGTTAGGTAGTCTACGGATCTG 59.789 50.000 0.00 0.00 0.00 2.90
179 180 3.497640 CGTTAGGTAGTCTACGGATCTGG 59.502 52.174 6.47 0.00 0.00 3.86
180 181 4.712476 GTTAGGTAGTCTACGGATCTGGA 58.288 47.826 6.47 0.00 0.00 3.86
181 182 5.315348 GTTAGGTAGTCTACGGATCTGGAT 58.685 45.833 6.47 0.00 0.00 3.41
182 183 6.471146 GTTAGGTAGTCTACGGATCTGGATA 58.529 44.000 6.47 0.00 0.00 2.59
183 184 5.782677 AGGTAGTCTACGGATCTGGATAT 57.217 43.478 6.47 0.00 0.00 1.63
184 185 6.887886 AGGTAGTCTACGGATCTGGATATA 57.112 41.667 6.47 0.00 0.00 0.86
185 186 6.891388 AGGTAGTCTACGGATCTGGATATAG 58.109 44.000 6.47 0.00 0.00 1.31
186 187 6.444493 AGGTAGTCTACGGATCTGGATATAGT 59.556 42.308 6.47 0.00 0.00 2.12
187 188 7.037442 AGGTAGTCTACGGATCTGGATATAGTT 60.037 40.741 6.47 0.00 0.00 2.24
188 189 7.611079 GGTAGTCTACGGATCTGGATATAGTTT 59.389 40.741 6.47 0.00 0.00 2.66
189 190 9.012161 GTAGTCTACGGATCTGGATATAGTTTT 57.988 37.037 6.47 0.00 0.00 2.43
190 191 8.480133 AGTCTACGGATCTGGATATAGTTTTT 57.520 34.615 6.47 0.00 0.00 1.94
234 235 8.592105 ATTTTTGGTGTTCATTGACTGTTATG 57.408 30.769 0.00 0.00 0.00 1.90
235 236 6.951062 TTTGGTGTTCATTGACTGTTATGA 57.049 33.333 3.36 3.36 0.00 2.15
236 237 7.523293 TTTGGTGTTCATTGACTGTTATGAT 57.477 32.000 7.18 0.00 31.34 2.45
237 238 7.523293 TTGGTGTTCATTGACTGTTATGATT 57.477 32.000 7.18 0.00 31.34 2.57
238 239 8.628630 TTGGTGTTCATTGACTGTTATGATTA 57.371 30.769 7.18 0.00 31.34 1.75
239 240 8.628630 TGGTGTTCATTGACTGTTATGATTAA 57.371 30.769 7.18 0.00 31.34 1.40
240 241 9.072375 TGGTGTTCATTGACTGTTATGATTAAA 57.928 29.630 7.18 0.00 31.34 1.52
241 242 9.559958 GGTGTTCATTGACTGTTATGATTAAAG 57.440 33.333 7.18 0.00 31.34 1.85
298 299 7.806149 AAAACTTACACAAGAAAGAAAACGG 57.194 32.000 0.00 0.00 35.60 4.44
299 300 4.916870 ACTTACACAAGAAAGAAAACGGC 58.083 39.130 0.00 0.00 35.60 5.68
300 301 4.396790 ACTTACACAAGAAAGAAAACGGCA 59.603 37.500 0.00 0.00 35.60 5.69
301 302 5.067283 ACTTACACAAGAAAGAAAACGGCAT 59.933 36.000 0.00 0.00 35.60 4.40
302 303 6.261381 ACTTACACAAGAAAGAAAACGGCATA 59.739 34.615 0.00 0.00 35.60 3.14
303 304 5.705609 ACACAAGAAAGAAAACGGCATAT 57.294 34.783 0.00 0.00 0.00 1.78
304 305 6.811253 ACACAAGAAAGAAAACGGCATATA 57.189 33.333 0.00 0.00 0.00 0.86
305 306 6.608610 ACACAAGAAAGAAAACGGCATATAC 58.391 36.000 0.00 0.00 0.00 1.47
306 307 5.732647 CACAAGAAAGAAAACGGCATATACG 59.267 40.000 0.00 0.00 37.36 3.06
307 308 5.640357 ACAAGAAAGAAAACGGCATATACGA 59.360 36.000 6.05 0.00 34.93 3.43
308 309 6.148150 ACAAGAAAGAAAACGGCATATACGAA 59.852 34.615 6.05 0.00 34.93 3.85
309 310 6.345920 AGAAAGAAAACGGCATATACGAAG 57.654 37.500 6.05 0.00 34.93 3.79
311 312 5.464965 AAGAAAACGGCATATACGAAGTG 57.535 39.130 6.05 0.00 45.73 3.16
312 313 3.308866 AGAAAACGGCATATACGAAGTGC 59.691 43.478 6.05 0.00 45.73 4.40
313 314 2.596904 AACGGCATATACGAAGTGCT 57.403 45.000 6.05 0.00 45.73 4.40
314 315 2.596904 ACGGCATATACGAAGTGCTT 57.403 45.000 6.05 0.00 45.73 3.91
315 316 2.201732 ACGGCATATACGAAGTGCTTG 58.798 47.619 6.05 0.00 45.73 4.01
316 317 2.159156 ACGGCATATACGAAGTGCTTGA 60.159 45.455 6.05 0.00 45.73 3.02
317 318 2.863740 CGGCATATACGAAGTGCTTGAA 59.136 45.455 0.00 0.00 45.73 2.69
318 319 3.060272 CGGCATATACGAAGTGCTTGAAG 60.060 47.826 0.00 0.00 45.73 3.02
319 320 3.303395 GGCATATACGAAGTGCTTGAAGC 60.303 47.826 10.84 10.84 45.73 3.86
330 331 2.813779 GCTTGAAGCATCTACAACCG 57.186 50.000 13.09 0.00 41.89 4.44
331 332 1.398390 GCTTGAAGCATCTACAACCGG 59.602 52.381 13.09 0.00 41.89 5.28
332 333 2.935238 GCTTGAAGCATCTACAACCGGA 60.935 50.000 13.09 0.00 41.89 5.14
333 334 2.380084 TGAAGCATCTACAACCGGAC 57.620 50.000 9.46 0.00 0.00 4.79
334 335 1.899814 TGAAGCATCTACAACCGGACT 59.100 47.619 9.46 0.00 0.00 3.85
335 336 2.301870 TGAAGCATCTACAACCGGACTT 59.698 45.455 9.46 0.00 0.00 3.01
336 337 3.244422 TGAAGCATCTACAACCGGACTTT 60.244 43.478 9.46 0.00 0.00 2.66
337 338 2.699954 AGCATCTACAACCGGACTTTG 58.300 47.619 9.46 4.81 0.00 2.77
338 339 1.130561 GCATCTACAACCGGACTTTGC 59.869 52.381 9.46 4.00 0.00 3.68
339 340 2.422597 CATCTACAACCGGACTTTGCA 58.577 47.619 9.46 0.00 0.00 4.08
340 341 2.623878 TCTACAACCGGACTTTGCAA 57.376 45.000 9.46 0.00 0.00 4.08
341 342 2.920524 TCTACAACCGGACTTTGCAAA 58.079 42.857 9.46 12.14 0.00 3.68
342 343 3.482436 TCTACAACCGGACTTTGCAAAT 58.518 40.909 13.23 3.03 0.00 2.32
343 344 2.793278 ACAACCGGACTTTGCAAATC 57.207 45.000 13.23 11.89 0.00 2.17
344 345 1.339929 ACAACCGGACTTTGCAAATCC 59.660 47.619 21.35 21.35 0.00 3.01
347 348 4.889427 GGACTTTGCAAATCCGGC 57.111 55.556 13.23 2.99 0.00 6.13
348 349 1.215382 GGACTTTGCAAATCCGGCC 59.785 57.895 13.23 9.29 0.00 6.13
349 350 1.215382 GACTTTGCAAATCCGGCCC 59.785 57.895 13.23 0.00 0.00 5.80
350 351 2.225791 GACTTTGCAAATCCGGCCCC 62.226 60.000 13.23 0.00 0.00 5.80
351 352 1.984026 CTTTGCAAATCCGGCCCCT 60.984 57.895 13.23 0.00 0.00 4.79
352 353 1.948721 CTTTGCAAATCCGGCCCCTC 61.949 60.000 13.23 0.00 0.00 4.30
353 354 2.721803 TTTGCAAATCCGGCCCCTCA 62.722 55.000 8.05 0.00 0.00 3.86
354 355 2.362375 GCAAATCCGGCCCCTCAA 60.362 61.111 0.00 0.00 0.00 3.02
355 356 1.981853 GCAAATCCGGCCCCTCAAA 60.982 57.895 0.00 0.00 0.00 2.69
356 357 1.890174 CAAATCCGGCCCCTCAAAC 59.110 57.895 0.00 0.00 0.00 2.93
357 358 1.677633 AAATCCGGCCCCTCAAACG 60.678 57.895 0.00 0.00 0.00 3.60
358 359 4.796495 ATCCGGCCCCTCAAACGC 62.796 66.667 0.00 0.00 0.00 4.84
364 365 2.281900 CCCCTCAAACGCCCGAAA 60.282 61.111 0.00 0.00 0.00 3.46
365 366 1.899534 CCCCTCAAACGCCCGAAAA 60.900 57.895 0.00 0.00 0.00 2.29
366 367 1.248101 CCCCTCAAACGCCCGAAAAT 61.248 55.000 0.00 0.00 0.00 1.82
367 368 0.170339 CCCTCAAACGCCCGAAAATC 59.830 55.000 0.00 0.00 0.00 2.17
368 369 1.165270 CCTCAAACGCCCGAAAATCT 58.835 50.000 0.00 0.00 0.00 2.40
369 370 1.130561 CCTCAAACGCCCGAAAATCTC 59.869 52.381 0.00 0.00 0.00 2.75
370 371 2.076863 CTCAAACGCCCGAAAATCTCT 58.923 47.619 0.00 0.00 0.00 3.10
371 372 1.804151 TCAAACGCCCGAAAATCTCTG 59.196 47.619 0.00 0.00 0.00 3.35
372 373 1.135689 CAAACGCCCGAAAATCTCTGG 60.136 52.381 0.00 0.00 0.00 3.86
373 374 0.323629 AACGCCCGAAAATCTCTGGA 59.676 50.000 0.00 0.00 29.98 3.86
374 375 0.108138 ACGCCCGAAAATCTCTGGAG 60.108 55.000 0.00 0.00 34.89 3.86
375 376 0.811616 CGCCCGAAAATCTCTGGAGG 60.812 60.000 0.00 0.00 29.98 4.30
376 377 0.253327 GCCCGAAAATCTCTGGAGGT 59.747 55.000 0.00 0.00 29.98 3.85
377 378 2.014068 GCCCGAAAATCTCTGGAGGTG 61.014 57.143 0.00 0.00 29.98 4.00
378 379 1.555075 CCCGAAAATCTCTGGAGGTGA 59.445 52.381 0.00 0.00 29.98 4.02
379 380 2.419297 CCCGAAAATCTCTGGAGGTGAG 60.419 54.545 0.00 0.00 29.98 3.51
380 381 2.275318 CGAAAATCTCTGGAGGTGAGC 58.725 52.381 0.00 0.00 0.00 4.26
381 382 2.093764 CGAAAATCTCTGGAGGTGAGCT 60.094 50.000 0.00 0.00 0.00 4.09
382 383 3.530535 GAAAATCTCTGGAGGTGAGCTC 58.469 50.000 6.82 6.82 0.00 4.09
383 384 1.110442 AATCTCTGGAGGTGAGCTCG 58.890 55.000 9.64 0.00 0.00 5.03
384 385 0.754957 ATCTCTGGAGGTGAGCTCGG 60.755 60.000 9.64 1.52 0.00 4.63
385 386 1.379176 CTCTGGAGGTGAGCTCGGA 60.379 63.158 9.64 5.78 0.00 4.55
386 387 0.754957 CTCTGGAGGTGAGCTCGGAT 60.755 60.000 9.64 0.00 0.00 4.18
387 388 1.039785 TCTGGAGGTGAGCTCGGATG 61.040 60.000 9.64 0.00 0.00 3.51
388 389 1.000359 TGGAGGTGAGCTCGGATGA 60.000 57.895 9.64 0.00 0.00 2.92
389 390 1.323271 TGGAGGTGAGCTCGGATGAC 61.323 60.000 9.64 0.46 0.00 3.06
390 391 1.064946 GAGGTGAGCTCGGATGACG 59.935 63.158 9.64 0.00 46.11 4.35
391 392 2.105128 GGTGAGCTCGGATGACGG 59.895 66.667 9.64 0.00 44.45 4.79
392 393 2.415608 GGTGAGCTCGGATGACGGA 61.416 63.158 9.64 0.00 44.45 4.69
393 394 1.064946 GTGAGCTCGGATGACGGAG 59.935 63.158 9.64 0.00 44.45 4.63
394 395 2.121538 TGAGCTCGGATGACGGAGG 61.122 63.158 9.64 0.00 44.45 4.30
395 396 2.835431 AGCTCGGATGACGGAGGG 60.835 66.667 0.00 0.00 44.45 4.30
396 397 2.833582 GCTCGGATGACGGAGGGA 60.834 66.667 0.00 0.00 44.45 4.20
397 398 2.851071 GCTCGGATGACGGAGGGAG 61.851 68.421 0.00 0.00 44.45 4.30
398 399 1.454111 CTCGGATGACGGAGGGAGT 60.454 63.158 0.00 0.00 44.45 3.85
399 400 1.729470 CTCGGATGACGGAGGGAGTG 61.729 65.000 0.00 0.00 44.45 3.51
400 401 2.786495 CGGATGACGGAGGGAGTGG 61.786 68.421 0.00 0.00 39.42 4.00
401 402 1.381327 GGATGACGGAGGGAGTGGA 60.381 63.158 0.00 0.00 0.00 4.02
402 403 1.395826 GGATGACGGAGGGAGTGGAG 61.396 65.000 0.00 0.00 0.00 3.86
403 404 1.381872 ATGACGGAGGGAGTGGAGG 60.382 63.158 0.00 0.00 0.00 4.30
404 405 1.875422 ATGACGGAGGGAGTGGAGGA 61.875 60.000 0.00 0.00 0.00 3.71
405 406 1.305046 GACGGAGGGAGTGGAGGAA 60.305 63.158 0.00 0.00 0.00 3.36
406 407 0.903454 GACGGAGGGAGTGGAGGAAA 60.903 60.000 0.00 0.00 0.00 3.13
407 408 0.905337 ACGGAGGGAGTGGAGGAAAG 60.905 60.000 0.00 0.00 0.00 2.62
408 409 0.614979 CGGAGGGAGTGGAGGAAAGA 60.615 60.000 0.00 0.00 0.00 2.52
409 410 1.199615 GGAGGGAGTGGAGGAAAGAG 58.800 60.000 0.00 0.00 0.00 2.85
410 411 1.199615 GAGGGAGTGGAGGAAAGAGG 58.800 60.000 0.00 0.00 0.00 3.69
411 412 0.793617 AGGGAGTGGAGGAAAGAGGA 59.206 55.000 0.00 0.00 0.00 3.71
412 413 1.199615 GGGAGTGGAGGAAAGAGGAG 58.800 60.000 0.00 0.00 0.00 3.69
413 414 1.553651 GGGAGTGGAGGAAAGAGGAGT 60.554 57.143 0.00 0.00 0.00 3.85
414 415 1.552792 GGAGTGGAGGAAAGAGGAGTG 59.447 57.143 0.00 0.00 0.00 3.51
415 416 2.252714 GAGTGGAGGAAAGAGGAGTGT 58.747 52.381 0.00 0.00 0.00 3.55
416 417 1.974236 AGTGGAGGAAAGAGGAGTGTG 59.026 52.381 0.00 0.00 0.00 3.82
417 418 1.971357 GTGGAGGAAAGAGGAGTGTGA 59.029 52.381 0.00 0.00 0.00 3.58
418 419 2.368875 GTGGAGGAAAGAGGAGTGTGAA 59.631 50.000 0.00 0.00 0.00 3.18
419 420 2.634940 TGGAGGAAAGAGGAGTGTGAAG 59.365 50.000 0.00 0.00 0.00 3.02
420 421 2.635427 GGAGGAAAGAGGAGTGTGAAGT 59.365 50.000 0.00 0.00 0.00 3.01
421 422 3.556004 GGAGGAAAGAGGAGTGTGAAGTG 60.556 52.174 0.00 0.00 0.00 3.16
422 423 3.309296 AGGAAAGAGGAGTGTGAAGTGA 58.691 45.455 0.00 0.00 0.00 3.41
423 424 3.323403 AGGAAAGAGGAGTGTGAAGTGAG 59.677 47.826 0.00 0.00 0.00 3.51
424 425 3.070302 GGAAAGAGGAGTGTGAAGTGAGT 59.930 47.826 0.00 0.00 0.00 3.41
425 426 4.281182 GGAAAGAGGAGTGTGAAGTGAGTA 59.719 45.833 0.00 0.00 0.00 2.59
426 427 5.461032 AAAGAGGAGTGTGAAGTGAGTAG 57.539 43.478 0.00 0.00 0.00 2.57
427 428 3.426615 AGAGGAGTGTGAAGTGAGTAGG 58.573 50.000 0.00 0.00 0.00 3.18
428 429 2.494073 GAGGAGTGTGAAGTGAGTAGGG 59.506 54.545 0.00 0.00 0.00 3.53
429 430 2.158295 AGGAGTGTGAAGTGAGTAGGGT 60.158 50.000 0.00 0.00 0.00 4.34
430 431 2.633481 GGAGTGTGAAGTGAGTAGGGTT 59.367 50.000 0.00 0.00 0.00 4.11
431 432 3.071167 GGAGTGTGAAGTGAGTAGGGTTT 59.929 47.826 0.00 0.00 0.00 3.27
432 433 4.058817 GAGTGTGAAGTGAGTAGGGTTTG 58.941 47.826 0.00 0.00 0.00 2.93
433 434 3.139077 GTGTGAAGTGAGTAGGGTTTGG 58.861 50.000 0.00 0.00 0.00 3.28
434 435 2.775384 TGTGAAGTGAGTAGGGTTTGGT 59.225 45.455 0.00 0.00 0.00 3.67
435 436 3.181458 TGTGAAGTGAGTAGGGTTTGGTC 60.181 47.826 0.00 0.00 0.00 4.02
436 437 2.370849 TGAAGTGAGTAGGGTTTGGTCC 59.629 50.000 0.00 0.00 0.00 4.46
437 438 0.974383 AGTGAGTAGGGTTTGGTCCG 59.026 55.000 0.00 0.00 0.00 4.79
438 439 0.036671 GTGAGTAGGGTTTGGTCCGG 60.037 60.000 0.00 0.00 0.00 5.14
439 440 1.078637 GAGTAGGGTTTGGTCCGGC 60.079 63.158 0.00 0.00 0.00 6.13
440 441 2.435410 GTAGGGTTTGGTCCGGCG 60.435 66.667 0.00 0.00 0.00 6.46
441 442 2.604079 TAGGGTTTGGTCCGGCGA 60.604 61.111 9.30 0.00 0.00 5.54
442 443 2.652095 TAGGGTTTGGTCCGGCGAG 61.652 63.158 9.30 0.00 0.00 5.03
456 457 3.833645 CGAGCGGATGGGGACGAA 61.834 66.667 0.00 0.00 0.00 3.85
457 458 2.822399 GAGCGGATGGGGACGAAT 59.178 61.111 0.00 0.00 0.00 3.34
458 459 1.802337 CGAGCGGATGGGGACGAATA 61.802 60.000 0.00 0.00 0.00 1.75
459 460 0.608640 GAGCGGATGGGGACGAATAT 59.391 55.000 0.00 0.00 0.00 1.28
460 461 1.822990 GAGCGGATGGGGACGAATATA 59.177 52.381 0.00 0.00 0.00 0.86
461 462 2.431057 GAGCGGATGGGGACGAATATAT 59.569 50.000 0.00 0.00 0.00 0.86
462 463 2.168521 AGCGGATGGGGACGAATATATG 59.831 50.000 0.00 0.00 0.00 1.78
463 464 2.093658 GCGGATGGGGACGAATATATGT 60.094 50.000 0.00 0.00 0.00 2.29
464 465 3.521560 CGGATGGGGACGAATATATGTG 58.478 50.000 0.00 0.00 0.00 3.21
465 466 3.194755 CGGATGGGGACGAATATATGTGA 59.805 47.826 0.00 0.00 0.00 3.58
466 467 4.322424 CGGATGGGGACGAATATATGTGAA 60.322 45.833 0.00 0.00 0.00 3.18
467 468 5.556915 GGATGGGGACGAATATATGTGAAA 58.443 41.667 0.00 0.00 0.00 2.69
468 469 6.180472 GGATGGGGACGAATATATGTGAAAT 58.820 40.000 0.00 0.00 0.00 2.17
469 470 6.316390 GGATGGGGACGAATATATGTGAAATC 59.684 42.308 0.00 0.00 0.00 2.17
470 471 6.181206 TGGGGACGAATATATGTGAAATCA 57.819 37.500 0.00 0.00 0.00 2.57
471 472 6.230472 TGGGGACGAATATATGTGAAATCAG 58.770 40.000 0.00 0.00 0.00 2.90
472 473 5.643777 GGGGACGAATATATGTGAAATCAGG 59.356 44.000 0.00 0.00 0.00 3.86
473 474 6.231211 GGGACGAATATATGTGAAATCAGGT 58.769 40.000 0.00 0.00 0.00 4.00
474 475 6.147821 GGGACGAATATATGTGAAATCAGGTG 59.852 42.308 0.00 0.00 0.00 4.00
475 476 6.147821 GGACGAATATATGTGAAATCAGGTGG 59.852 42.308 0.00 0.00 0.00 4.61
476 477 5.997746 ACGAATATATGTGAAATCAGGTGGG 59.002 40.000 0.00 0.00 0.00 4.61
477 478 5.106555 CGAATATATGTGAAATCAGGTGGGC 60.107 44.000 0.00 0.00 0.00 5.36
478 479 3.959495 ATATGTGAAATCAGGTGGGCT 57.041 42.857 0.00 0.00 0.00 5.19
479 480 6.702449 ATATATGTGAAATCAGGTGGGCTA 57.298 37.500 0.00 0.00 0.00 3.93
480 481 2.787473 TGTGAAATCAGGTGGGCTAG 57.213 50.000 0.00 0.00 0.00 3.42
481 482 1.340017 TGTGAAATCAGGTGGGCTAGC 60.340 52.381 6.04 6.04 0.00 3.42
482 483 0.991146 TGAAATCAGGTGGGCTAGCA 59.009 50.000 18.24 0.00 0.00 3.49
483 484 1.565759 TGAAATCAGGTGGGCTAGCAT 59.434 47.619 18.24 0.00 0.00 3.79
484 485 1.952296 GAAATCAGGTGGGCTAGCATG 59.048 52.381 18.24 6.90 0.00 4.06
485 486 1.216064 AATCAGGTGGGCTAGCATGA 58.784 50.000 18.24 11.99 0.00 3.07
486 487 0.763652 ATCAGGTGGGCTAGCATGAG 59.236 55.000 18.24 0.88 0.00 2.90
487 488 1.525535 CAGGTGGGCTAGCATGAGC 60.526 63.158 18.24 8.89 42.05 4.26
493 494 4.334837 GCTAGCATGAGCCGAGTC 57.665 61.111 10.63 0.00 43.56 3.36
494 495 1.300542 GCTAGCATGAGCCGAGTCC 60.301 63.158 10.63 0.00 43.56 3.85
495 496 1.007964 CTAGCATGAGCCGAGTCCG 60.008 63.158 0.00 0.00 43.56 4.79
496 497 1.448119 CTAGCATGAGCCGAGTCCGA 61.448 60.000 0.00 0.00 43.56 4.55
497 498 1.725557 TAGCATGAGCCGAGTCCGAC 61.726 60.000 0.00 0.00 43.56 4.79
498 499 2.278206 CATGAGCCGAGTCCGACG 60.278 66.667 0.00 0.00 38.22 5.12
499 500 2.750637 ATGAGCCGAGTCCGACGT 60.751 61.111 0.00 0.00 38.22 4.34
500 501 3.052620 ATGAGCCGAGTCCGACGTG 62.053 63.158 0.00 0.00 38.22 4.49
501 502 4.477975 GAGCCGAGTCCGACGTGG 62.478 72.222 0.00 7.51 38.22 4.94
528 529 1.606903 GTCCGGACGTCTCATATCCT 58.393 55.000 20.85 0.00 0.00 3.24
529 530 1.536331 GTCCGGACGTCTCATATCCTC 59.464 57.143 20.85 0.00 0.00 3.71
530 531 1.420514 TCCGGACGTCTCATATCCTCT 59.579 52.381 16.46 0.00 0.00 3.69
531 532 2.158652 TCCGGACGTCTCATATCCTCTT 60.159 50.000 16.46 0.00 0.00 2.85
532 533 2.623889 CCGGACGTCTCATATCCTCTTT 59.376 50.000 16.46 0.00 0.00 2.52
533 534 3.819337 CCGGACGTCTCATATCCTCTTTA 59.181 47.826 16.46 0.00 0.00 1.85
534 535 4.459685 CCGGACGTCTCATATCCTCTTTAT 59.540 45.833 16.46 0.00 0.00 1.40
535 536 5.646793 CCGGACGTCTCATATCCTCTTTATA 59.353 44.000 16.46 0.00 0.00 0.98
536 537 6.319152 CCGGACGTCTCATATCCTCTTTATAT 59.681 42.308 16.46 0.00 0.00 0.86
537 538 7.148052 CCGGACGTCTCATATCCTCTTTATATT 60.148 40.741 16.46 0.00 0.00 1.28
538 539 8.244802 CGGACGTCTCATATCCTCTTTATATTT 58.755 37.037 16.46 0.00 0.00 1.40
539 540 9.360093 GGACGTCTCATATCCTCTTTATATTTG 57.640 37.037 16.46 0.00 0.00 2.32
540 541 9.360093 GACGTCTCATATCCTCTTTATATTTGG 57.640 37.037 8.70 0.00 0.00 3.28
541 542 8.314751 ACGTCTCATATCCTCTTTATATTTGGG 58.685 37.037 0.00 0.00 0.00 4.12
542 543 7.278868 CGTCTCATATCCTCTTTATATTTGGGC 59.721 40.741 0.00 0.00 0.00 5.36
543 544 8.325046 GTCTCATATCCTCTTTATATTTGGGCT 58.675 37.037 0.00 0.00 0.00 5.19
544 545 8.324306 TCTCATATCCTCTTTATATTTGGGCTG 58.676 37.037 0.00 0.00 0.00 4.85
545 546 7.405292 TCATATCCTCTTTATATTTGGGCTGG 58.595 38.462 0.00 0.00 0.00 4.85
546 547 5.930209 ATCCTCTTTATATTTGGGCTGGA 57.070 39.130 0.00 0.00 0.00 3.86
547 548 5.930209 TCCTCTTTATATTTGGGCTGGAT 57.070 39.130 0.00 0.00 0.00 3.41
548 549 7.588866 ATCCTCTTTATATTTGGGCTGGATA 57.411 36.000 0.00 0.00 0.00 2.59
549 550 7.588866 TCCTCTTTATATTTGGGCTGGATAT 57.411 36.000 0.00 0.00 0.00 1.63
550 551 7.405292 TCCTCTTTATATTTGGGCTGGATATG 58.595 38.462 0.00 0.00 0.00 1.78
551 552 7.239563 TCCTCTTTATATTTGGGCTGGATATGA 59.760 37.037 0.00 0.00 0.00 2.15
552 553 7.555554 CCTCTTTATATTTGGGCTGGATATGAG 59.444 40.741 0.00 0.00 0.00 2.90
553 554 7.405292 TCTTTATATTTGGGCTGGATATGAGG 58.595 38.462 0.00 0.00 0.00 3.86
554 555 2.986534 ATTTGGGCTGGATATGAGGG 57.013 50.000 0.00 0.00 0.00 4.30
555 556 0.852842 TTTGGGCTGGATATGAGGGG 59.147 55.000 0.00 0.00 0.00 4.79
556 557 0.328450 TTGGGCTGGATATGAGGGGT 60.328 55.000 0.00 0.00 0.00 4.95
557 558 1.061905 TGGGCTGGATATGAGGGGTG 61.062 60.000 0.00 0.00 0.00 4.61
558 559 1.073897 GGCTGGATATGAGGGGTGC 59.926 63.158 0.00 0.00 0.00 5.01
559 560 1.073897 GCTGGATATGAGGGGTGCC 59.926 63.158 0.00 0.00 0.00 5.01
560 561 1.372683 CTGGATATGAGGGGTGCCG 59.627 63.158 0.00 0.00 0.00 5.69
561 562 2.116983 CTGGATATGAGGGGTGCCGG 62.117 65.000 0.00 0.00 0.00 6.13
562 563 2.147387 GGATATGAGGGGTGCCGGT 61.147 63.158 1.90 0.00 0.00 5.28
563 564 1.371558 GATATGAGGGGTGCCGGTC 59.628 63.158 1.90 0.00 0.00 4.79
564 565 1.383943 ATATGAGGGGTGCCGGTCA 60.384 57.895 1.90 0.00 0.00 4.02
565 566 1.410850 ATATGAGGGGTGCCGGTCAG 61.411 60.000 1.90 0.00 0.00 3.51
578 579 2.807045 GTCAGCGCGGACACTGAG 60.807 66.667 31.48 2.11 43.30 3.35
596 597 2.892425 GCCCGTCTGAAGCATCCG 60.892 66.667 0.00 0.00 0.00 4.18
600 601 0.738975 CCGTCTGAAGCATCCGTCTA 59.261 55.000 0.00 0.00 0.00 2.59
604 605 3.440228 GTCTGAAGCATCCGTCTAAGTC 58.560 50.000 0.00 0.00 0.00 3.01
612 613 4.935808 AGCATCCGTCTAAGTCGAAATTTT 59.064 37.500 0.00 0.00 0.00 1.82
613 614 6.103997 AGCATCCGTCTAAGTCGAAATTTTA 58.896 36.000 0.00 0.00 0.00 1.52
615 616 6.846283 GCATCCGTCTAAGTCGAAATTTTATG 59.154 38.462 0.00 0.00 0.00 1.90
617 618 7.515957 TCCGTCTAAGTCGAAATTTTATGAC 57.484 36.000 9.77 9.77 0.00 3.06
623 624 4.828829 AGTCGAAATTTTATGACCGGACT 58.171 39.130 9.46 0.00 31.75 3.85
655 656 4.367023 CGTCCGGGCGTTTCAGGA 62.367 66.667 22.93 0.00 0.00 3.86
656 657 2.434359 GTCCGGGCGTTTCAGGAG 60.434 66.667 0.00 0.00 32.82 3.69
657 658 2.920912 TCCGGGCGTTTCAGGAGT 60.921 61.111 0.00 0.00 0.00 3.85
658 659 2.742372 CCGGGCGTTTCAGGAGTG 60.742 66.667 0.00 0.00 0.00 3.51
659 660 2.030562 CGGGCGTTTCAGGAGTGT 59.969 61.111 0.00 0.00 0.00 3.55
660 661 1.597027 CGGGCGTTTCAGGAGTGTT 60.597 57.895 0.00 0.00 0.00 3.32
661 662 1.566018 CGGGCGTTTCAGGAGTGTTC 61.566 60.000 0.00 0.00 0.00 3.18
693 694 1.674221 GCCCTCTTACACACAGCTCAG 60.674 57.143 0.00 0.00 0.00 3.35
716 717 5.753921 AGAGTCTTCGACCACTTGTAAAAAG 59.246 40.000 0.00 0.00 32.18 2.27
719 720 3.564053 TCGACCACTTGTAAAAAGGGT 57.436 42.857 0.00 0.00 0.00 4.34
724 725 6.546772 TCGACCACTTGTAAAAAGGGTAAAAT 59.453 34.615 0.00 0.00 0.00 1.82
727 728 6.099125 ACCACTTGTAAAAAGGGTAAAATGCT 59.901 34.615 0.00 0.00 0.00 3.79
728 729 6.645003 CCACTTGTAAAAAGGGTAAAATGCTC 59.355 38.462 0.00 0.00 0.00 4.26
729 730 7.206687 CACTTGTAAAAAGGGTAAAATGCTCA 58.793 34.615 0.00 0.00 0.00 4.26
730 731 7.382218 CACTTGTAAAAAGGGTAAAATGCTCAG 59.618 37.037 0.00 0.00 0.00 3.35
917 921 6.036577 AGAAGCAAAGACAAAACCAAGAAA 57.963 33.333 0.00 0.00 0.00 2.52
1101 1105 1.733041 CAGCGGTGTGAGGTACGTG 60.733 63.158 6.41 0.00 0.00 4.49
1107 1111 1.835267 TGTGAGGTACGTGGCAGGT 60.835 57.895 17.69 17.69 0.00 4.00
1196 1203 1.374125 CGTCATCCACGTTGCTGGA 60.374 57.895 0.00 0.00 44.72 3.86
1301 1308 2.125552 CGTCTCCAGCATCGGCAA 60.126 61.111 0.00 0.00 44.61 4.52
1305 1312 2.033911 TCCAGCATCGGCAAGCAA 59.966 55.556 0.00 0.00 44.61 3.91
1311 1318 1.587088 CATCGGCAAGCAATTCGCC 60.587 57.895 0.00 0.00 44.04 5.54
1455 1462 0.385723 GCGATCTATGGGTCGACGAC 60.386 60.000 19.70 19.70 40.11 4.34
1458 1465 1.948145 GATCTATGGGTCGACGACACT 59.052 52.381 28.89 17.36 36.82 3.55
1533 1540 2.349886 GCTGACAATCAAGATGGTCGAC 59.650 50.000 7.13 7.13 43.19 4.20
1617 1624 0.603569 AGAATGCGGTCTCACTCGTT 59.396 50.000 0.00 0.00 0.00 3.85
1659 1666 1.296392 CAGGTGATCGGAGGCAACA 59.704 57.895 2.20 0.00 41.41 3.33
1714 1721 4.437682 TTTGAGGAGTGTCCATTTGTCT 57.562 40.909 0.00 0.00 39.61 3.41
1715 1722 5.560722 TTTGAGGAGTGTCCATTTGTCTA 57.439 39.130 0.00 0.00 39.61 2.59
1716 1723 5.762179 TTGAGGAGTGTCCATTTGTCTAT 57.238 39.130 0.00 0.00 39.61 1.98
1717 1724 5.344743 TGAGGAGTGTCCATTTGTCTATC 57.655 43.478 0.00 0.00 39.61 2.08
1782 1791 0.814010 GACACTGTTTGGAGCGTGGT 60.814 55.000 0.00 0.00 0.00 4.16
1966 1982 2.464865 CTCCTTGGACTTCTATTCGCG 58.535 52.381 0.00 0.00 0.00 5.87
1968 1984 3.018856 TCCTTGGACTTCTATTCGCGTA 58.981 45.455 5.77 0.00 0.00 4.42
2064 3159 6.710744 ACCATTATTTATCCTTACGAAGCCTG 59.289 38.462 0.00 0.00 0.00 4.85
2067 3162 7.781548 TTATTTATCCTTACGAAGCCTGTTC 57.218 36.000 0.00 0.00 0.00 3.18
2070 3165 1.275291 TCCTTACGAAGCCTGTTCAGG 59.725 52.381 13.88 13.88 0.00 3.86
2088 3183 0.951040 GGAAGGCGAGTCAGTTGGTG 60.951 60.000 0.00 0.00 0.00 4.17
2105 3200 5.133153 AGTTGGTGTTCCCTAAACCTAAGAA 59.867 40.000 0.00 0.00 37.03 2.52
2139 3234 6.763610 AGAATGCAAGTACTTATCCTAAGCAC 59.236 38.462 14.50 5.79 31.79 4.40
2141 3236 5.661458 TGCAAGTACTTATCCTAAGCACTC 58.339 41.667 8.04 0.00 0.00 3.51
2145 3240 6.718522 AGTACTTATCCTAAGCACTCCTTC 57.281 41.667 0.00 0.00 34.95 3.46
2171 3266 2.961062 GCCCCGTCCTTAGTAAGTATCA 59.039 50.000 9.05 0.00 0.00 2.15
2195 3290 7.708322 TCATGTAGAGTCATTTTCTCAGCATAC 59.292 37.037 0.00 0.00 34.73 2.39
2226 3321 3.386768 AATATCGATGTCTTCCACCCG 57.613 47.619 8.54 0.00 0.00 5.28
2239 3341 0.535797 CCACCCGGAGACCTCTTTAC 59.464 60.000 0.73 0.00 0.00 2.01
2244 3346 1.536284 CCGGAGACCTCTTTACGATGC 60.536 57.143 0.00 0.00 0.00 3.91
2245 3347 1.134367 CGGAGACCTCTTTACGATGCA 59.866 52.381 0.00 0.00 0.00 3.96
2271 3373 1.005289 ATCCCACCTCATCAGGCCT 59.995 57.895 0.00 0.00 45.05 5.19
2278 3380 4.392940 CCACCTCATCAGGCCTTATTTAG 58.607 47.826 0.00 0.37 45.05 1.85
2449 3553 3.941483 CCCACAAGACATAAGCTTACCTG 59.059 47.826 8.70 6.93 0.00 4.00
2456 3560 4.286032 AGACATAAGCTTACCTGTCCAACA 59.714 41.667 25.96 0.00 39.00 3.33
2458 3562 5.003804 ACATAAGCTTACCTGTCCAACAAG 58.996 41.667 8.70 0.00 0.00 3.16
2465 3569 3.673543 ACCTGTCCAACAAGGGTTTTA 57.326 42.857 0.00 0.00 38.24 1.52
2513 3618 8.458573 TTTCATTCCTTGCTAAGAAGTTTACA 57.541 30.769 0.00 0.00 0.00 2.41
2526 3631 7.406799 AAGAAGTTTACAAAAATGCATTCGG 57.593 32.000 13.38 7.82 0.00 4.30
2562 3667 2.338577 AAGGGAATGAGCCAATCTCG 57.661 50.000 0.00 0.00 44.86 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.608317 GCAACTTTAACAAACACCATAAAACAT 58.392 29.630 0.00 0.00 0.00 2.71
4 5 7.819900 AGCAACTTTAACAAACACCATAAAACA 59.180 29.630 0.00 0.00 0.00 2.83
5 6 8.192068 AGCAACTTTAACAAACACCATAAAAC 57.808 30.769 0.00 0.00 0.00 2.43
6 7 7.221067 CGAGCAACTTTAACAAACACCATAAAA 59.779 33.333 0.00 0.00 0.00 1.52
7 8 6.693545 CGAGCAACTTTAACAAACACCATAAA 59.306 34.615 0.00 0.00 0.00 1.40
8 9 6.183360 ACGAGCAACTTTAACAAACACCATAA 60.183 34.615 0.00 0.00 0.00 1.90
9 10 5.297278 ACGAGCAACTTTAACAAACACCATA 59.703 36.000 0.00 0.00 0.00 2.74
10 11 4.097286 ACGAGCAACTTTAACAAACACCAT 59.903 37.500 0.00 0.00 0.00 3.55
11 12 3.440872 ACGAGCAACTTTAACAAACACCA 59.559 39.130 0.00 0.00 0.00 4.17
12 13 4.023739 ACGAGCAACTTTAACAAACACC 57.976 40.909 0.00 0.00 0.00 4.16
13 14 7.673810 AAATACGAGCAACTTTAACAAACAC 57.326 32.000 0.00 0.00 0.00 3.32
14 15 8.690680 AAAAATACGAGCAACTTTAACAAACA 57.309 26.923 0.00 0.00 0.00 2.83
37 38 3.500680 GTCATGAGCCTCCGTTGTAAAAA 59.499 43.478 0.00 0.00 0.00 1.94
38 39 3.071479 GTCATGAGCCTCCGTTGTAAAA 58.929 45.455 0.00 0.00 0.00 1.52
39 40 2.695359 GTCATGAGCCTCCGTTGTAAA 58.305 47.619 0.00 0.00 0.00 2.01
40 41 1.403647 CGTCATGAGCCTCCGTTGTAA 60.404 52.381 0.00 0.00 0.00 2.41
41 42 0.172578 CGTCATGAGCCTCCGTTGTA 59.827 55.000 0.00 0.00 0.00 2.41
42 43 1.079819 CGTCATGAGCCTCCGTTGT 60.080 57.895 0.00 0.00 0.00 3.32
43 44 1.078759 GACGTCATGAGCCTCCGTTG 61.079 60.000 11.55 0.00 0.00 4.10
44 45 1.215647 GACGTCATGAGCCTCCGTT 59.784 57.895 11.55 0.00 0.00 4.44
45 46 2.711922 GGACGTCATGAGCCTCCGT 61.712 63.158 18.91 7.91 0.00 4.69
46 47 2.105128 GGACGTCATGAGCCTCCG 59.895 66.667 18.91 0.00 0.00 4.63
47 48 2.105128 CGGACGTCATGAGCCTCC 59.895 66.667 18.91 0.00 0.00 4.30
48 49 2.583593 GCGGACGTCATGAGCCTC 60.584 66.667 18.91 0.00 0.00 4.70
49 50 2.942796 TTGCGGACGTCATGAGCCT 61.943 57.895 18.91 0.00 0.00 4.58
50 51 2.434185 TTGCGGACGTCATGAGCC 60.434 61.111 18.91 0.00 0.00 4.70
51 52 1.565156 TTGTTGCGGACGTCATGAGC 61.565 55.000 18.91 16.37 0.00 4.26
52 53 0.865111 TTTGTTGCGGACGTCATGAG 59.135 50.000 18.91 6.55 0.00 2.90
53 54 0.865111 CTTTGTTGCGGACGTCATGA 59.135 50.000 18.91 0.00 0.00 3.07
54 55 0.725784 GCTTTGTTGCGGACGTCATG 60.726 55.000 18.91 10.32 0.00 3.07
55 56 1.574428 GCTTTGTTGCGGACGTCAT 59.426 52.632 18.91 0.00 0.00 3.06
56 57 2.539338 GGCTTTGTTGCGGACGTCA 61.539 57.895 18.91 0.00 0.00 4.35
57 58 2.054140 TTGGCTTTGTTGCGGACGTC 62.054 55.000 7.13 7.13 0.00 4.34
58 59 2.115911 TTGGCTTTGTTGCGGACGT 61.116 52.632 0.00 0.00 0.00 4.34
59 60 1.657181 GTTGGCTTTGTTGCGGACG 60.657 57.895 0.00 0.00 0.00 4.79
60 61 0.179124 TTGTTGGCTTTGTTGCGGAC 60.179 50.000 0.00 0.00 0.00 4.79
61 62 0.179124 GTTGTTGGCTTTGTTGCGGA 60.179 50.000 0.00 0.00 0.00 5.54
62 63 1.151172 GGTTGTTGGCTTTGTTGCGG 61.151 55.000 0.00 0.00 0.00 5.69
63 64 1.478622 CGGTTGTTGGCTTTGTTGCG 61.479 55.000 0.00 0.00 0.00 4.85
64 65 1.151172 CCGGTTGTTGGCTTTGTTGC 61.151 55.000 0.00 0.00 0.00 4.17
65 66 0.457851 TCCGGTTGTTGGCTTTGTTG 59.542 50.000 0.00 0.00 0.00 3.33
66 67 1.339929 GATCCGGTTGTTGGCTTTGTT 59.660 47.619 0.00 0.00 0.00 2.83
67 68 0.958822 GATCCGGTTGTTGGCTTTGT 59.041 50.000 0.00 0.00 0.00 2.83
68 69 0.109781 CGATCCGGTTGTTGGCTTTG 60.110 55.000 0.00 0.00 0.00 2.77
69 70 0.250553 TCGATCCGGTTGTTGGCTTT 60.251 50.000 0.00 0.00 0.00 3.51
70 71 0.250553 TTCGATCCGGTTGTTGGCTT 60.251 50.000 0.00 0.00 0.00 4.35
71 72 0.250553 TTTCGATCCGGTTGTTGGCT 60.251 50.000 0.00 0.00 0.00 4.75
72 73 0.808755 ATTTCGATCCGGTTGTTGGC 59.191 50.000 0.00 0.00 0.00 4.52
73 74 3.437395 TGTAATTTCGATCCGGTTGTTGG 59.563 43.478 0.00 0.00 0.00 3.77
74 75 4.153475 ACTGTAATTTCGATCCGGTTGTTG 59.847 41.667 0.00 0.00 0.00 3.33
75 76 4.153475 CACTGTAATTTCGATCCGGTTGTT 59.847 41.667 0.00 0.00 0.00 2.83
76 77 3.682858 CACTGTAATTTCGATCCGGTTGT 59.317 43.478 0.00 0.00 0.00 3.32
77 78 3.930229 TCACTGTAATTTCGATCCGGTTG 59.070 43.478 0.00 0.00 0.00 3.77
78 79 4.181578 CTCACTGTAATTTCGATCCGGTT 58.818 43.478 0.00 0.00 0.00 4.44
79 80 3.782046 CTCACTGTAATTTCGATCCGGT 58.218 45.455 0.00 0.00 0.00 5.28
80 81 2.540101 GCTCACTGTAATTTCGATCCGG 59.460 50.000 0.00 0.00 0.00 5.14
81 82 3.186909 TGCTCACTGTAATTTCGATCCG 58.813 45.455 0.00 0.00 0.00 4.18
82 83 4.391830 TGTTGCTCACTGTAATTTCGATCC 59.608 41.667 0.00 0.00 0.00 3.36
83 84 5.530519 TGTTGCTCACTGTAATTTCGATC 57.469 39.130 0.00 0.00 0.00 3.69
84 85 5.940192 TTGTTGCTCACTGTAATTTCGAT 57.060 34.783 0.00 0.00 0.00 3.59
85 86 5.277779 CCTTTGTTGCTCACTGTAATTTCGA 60.278 40.000 0.00 0.00 0.00 3.71
86 87 4.911610 CCTTTGTTGCTCACTGTAATTTCG 59.088 41.667 0.00 0.00 0.00 3.46
87 88 6.017109 TCTCCTTTGTTGCTCACTGTAATTTC 60.017 38.462 0.00 0.00 0.00 2.17
88 89 5.827797 TCTCCTTTGTTGCTCACTGTAATTT 59.172 36.000 0.00 0.00 0.00 1.82
89 90 5.376625 TCTCCTTTGTTGCTCACTGTAATT 58.623 37.500 0.00 0.00 0.00 1.40
90 91 4.973168 TCTCCTTTGTTGCTCACTGTAAT 58.027 39.130 0.00 0.00 0.00 1.89
91 92 4.380531 CTCTCCTTTGTTGCTCACTGTAA 58.619 43.478 0.00 0.00 0.00 2.41
92 93 3.244215 CCTCTCCTTTGTTGCTCACTGTA 60.244 47.826 0.00 0.00 0.00 2.74
93 94 2.486191 CCTCTCCTTTGTTGCTCACTGT 60.486 50.000 0.00 0.00 0.00 3.55
94 95 2.149578 CCTCTCCTTTGTTGCTCACTG 58.850 52.381 0.00 0.00 0.00 3.66
95 96 1.544314 GCCTCTCCTTTGTTGCTCACT 60.544 52.381 0.00 0.00 0.00 3.41
96 97 0.877743 GCCTCTCCTTTGTTGCTCAC 59.122 55.000 0.00 0.00 0.00 3.51
97 98 0.603707 CGCCTCTCCTTTGTTGCTCA 60.604 55.000 0.00 0.00 0.00 4.26
98 99 0.320771 TCGCCTCTCCTTTGTTGCTC 60.321 55.000 0.00 0.00 0.00 4.26
99 100 0.326264 ATCGCCTCTCCTTTGTTGCT 59.674 50.000 0.00 0.00 0.00 3.91
100 101 2.024176 TATCGCCTCTCCTTTGTTGC 57.976 50.000 0.00 0.00 0.00 4.17
101 102 2.348666 CGTTATCGCCTCTCCTTTGTTG 59.651 50.000 0.00 0.00 0.00 3.33
102 103 2.232941 TCGTTATCGCCTCTCCTTTGTT 59.767 45.455 0.00 0.00 36.96 2.83
103 104 1.822990 TCGTTATCGCCTCTCCTTTGT 59.177 47.619 0.00 0.00 36.96 2.83
104 105 2.194271 GTCGTTATCGCCTCTCCTTTG 58.806 52.381 0.00 0.00 36.96 2.77
105 106 1.822990 TGTCGTTATCGCCTCTCCTTT 59.177 47.619 0.00 0.00 36.96 3.11
106 107 1.405821 CTGTCGTTATCGCCTCTCCTT 59.594 52.381 0.00 0.00 36.96 3.36
107 108 1.025812 CTGTCGTTATCGCCTCTCCT 58.974 55.000 0.00 0.00 36.96 3.69
108 109 0.595310 GCTGTCGTTATCGCCTCTCC 60.595 60.000 0.00 0.00 36.96 3.71
109 110 0.930742 CGCTGTCGTTATCGCCTCTC 60.931 60.000 0.00 0.00 36.96 3.20
110 111 1.064296 CGCTGTCGTTATCGCCTCT 59.936 57.895 0.00 0.00 36.96 3.69
111 112 2.577785 GCGCTGTCGTTATCGCCTC 61.578 63.158 0.00 0.00 41.53 4.70
112 113 2.582498 GCGCTGTCGTTATCGCCT 60.582 61.111 0.00 0.00 41.53 5.52
113 114 3.972803 CGCGCTGTCGTTATCGCC 61.973 66.667 5.56 0.00 44.12 5.54
114 115 4.612653 GCGCGCTGTCGTTATCGC 62.613 66.667 26.67 0.00 43.62 4.58
115 116 2.077801 AATGCGCGCTGTCGTTATCG 62.078 55.000 33.29 0.00 38.14 2.92
116 117 0.381909 GAATGCGCGCTGTCGTTATC 60.382 55.000 33.29 13.86 38.14 1.75
117 118 1.636340 GAATGCGCGCTGTCGTTAT 59.364 52.632 33.29 12.70 38.14 1.89
118 119 2.784084 CGAATGCGCGCTGTCGTTA 61.784 57.895 33.72 16.47 38.14 3.18
119 120 4.134187 CGAATGCGCGCTGTCGTT 62.134 61.111 33.72 21.35 38.14 3.85
130 131 2.103042 ACTGAAGCGAGCCGAATGC 61.103 57.895 0.00 0.00 41.71 3.56
131 132 1.016130 ACACTGAAGCGAGCCGAATG 61.016 55.000 0.00 0.00 0.00 2.67
132 133 0.530744 TACACTGAAGCGAGCCGAAT 59.469 50.000 0.00 0.00 0.00 3.34
133 134 0.109272 CTACACTGAAGCGAGCCGAA 60.109 55.000 0.00 0.00 0.00 4.30
134 135 1.241990 ACTACACTGAAGCGAGCCGA 61.242 55.000 0.00 0.00 0.00 5.54
135 136 0.798771 GACTACACTGAAGCGAGCCG 60.799 60.000 0.00 0.00 0.00 5.52
136 137 0.798771 CGACTACACTGAAGCGAGCC 60.799 60.000 0.00 0.00 0.00 4.70
137 138 0.109689 ACGACTACACTGAAGCGAGC 60.110 55.000 0.00 0.00 0.00 5.03
138 139 1.787281 CGACGACTACACTGAAGCGAG 60.787 57.143 0.00 0.00 0.00 5.03
139 140 0.165295 CGACGACTACACTGAAGCGA 59.835 55.000 0.00 0.00 0.00 4.93
140 141 0.110328 ACGACGACTACACTGAAGCG 60.110 55.000 0.00 0.00 0.00 4.68
141 142 2.047679 AACGACGACTACACTGAAGC 57.952 50.000 0.00 0.00 0.00 3.86
142 143 3.188048 ACCTAACGACGACTACACTGAAG 59.812 47.826 0.00 0.00 0.00 3.02
143 144 3.141398 ACCTAACGACGACTACACTGAA 58.859 45.455 0.00 0.00 0.00 3.02
144 145 2.771089 ACCTAACGACGACTACACTGA 58.229 47.619 0.00 0.00 0.00 3.41
145 146 3.681897 ACTACCTAACGACGACTACACTG 59.318 47.826 0.00 0.00 0.00 3.66
146 147 3.929610 GACTACCTAACGACGACTACACT 59.070 47.826 0.00 0.00 0.00 3.55
147 148 3.929610 AGACTACCTAACGACGACTACAC 59.070 47.826 0.00 0.00 0.00 2.90
148 149 4.193826 AGACTACCTAACGACGACTACA 57.806 45.455 0.00 0.00 0.00 2.74
149 150 4.205385 CGTAGACTACCTAACGACGACTAC 59.795 50.000 0.00 0.00 35.43 2.73
150 151 4.352039 CGTAGACTACCTAACGACGACTA 58.648 47.826 0.00 0.00 35.43 2.59
151 152 3.182967 CGTAGACTACCTAACGACGACT 58.817 50.000 0.00 0.00 35.43 4.18
152 153 2.282820 CCGTAGACTACCTAACGACGAC 59.717 54.545 0.00 0.00 35.43 4.34
153 154 2.165641 TCCGTAGACTACCTAACGACGA 59.834 50.000 0.00 0.00 35.43 4.20
154 155 2.540515 TCCGTAGACTACCTAACGACG 58.459 52.381 7.05 0.00 33.84 5.12
155 156 4.210955 CAGATCCGTAGACTACCTAACGAC 59.789 50.000 7.05 0.00 0.00 4.34
156 157 4.375272 CAGATCCGTAGACTACCTAACGA 58.625 47.826 7.05 0.00 0.00 3.85
157 158 3.497640 CCAGATCCGTAGACTACCTAACG 59.502 52.174 7.05 0.00 0.00 3.18
158 159 4.712476 TCCAGATCCGTAGACTACCTAAC 58.288 47.826 7.05 0.00 0.00 2.34
159 160 5.579753 ATCCAGATCCGTAGACTACCTAA 57.420 43.478 7.05 0.00 0.00 2.69
160 161 6.887886 ATATCCAGATCCGTAGACTACCTA 57.112 41.667 7.05 0.00 0.00 3.08
161 162 5.782677 ATATCCAGATCCGTAGACTACCT 57.217 43.478 7.05 0.00 0.00 3.08
162 163 6.652053 ACTATATCCAGATCCGTAGACTACC 58.348 44.000 7.05 0.00 0.00 3.18
163 164 8.564509 AAACTATATCCAGATCCGTAGACTAC 57.435 38.462 2.24 2.24 0.00 2.73
164 165 9.584008 AAAAACTATATCCAGATCCGTAGACTA 57.416 33.333 0.00 0.00 0.00 2.59
165 166 8.480133 AAAAACTATATCCAGATCCGTAGACT 57.520 34.615 0.00 0.00 0.00 3.24
208 209 9.689976 CATAACAGTCAATGAACACCAAAAATA 57.310 29.630 0.00 0.00 0.00 1.40
209 210 8.420222 TCATAACAGTCAATGAACACCAAAAAT 58.580 29.630 0.00 0.00 0.00 1.82
210 211 7.776107 TCATAACAGTCAATGAACACCAAAAA 58.224 30.769 0.00 0.00 0.00 1.94
211 212 7.340122 TCATAACAGTCAATGAACACCAAAA 57.660 32.000 0.00 0.00 0.00 2.44
212 213 6.951062 TCATAACAGTCAATGAACACCAAA 57.049 33.333 0.00 0.00 0.00 3.28
213 214 7.523293 AATCATAACAGTCAATGAACACCAA 57.477 32.000 3.33 0.00 35.82 3.67
214 215 8.628630 TTAATCATAACAGTCAATGAACACCA 57.371 30.769 3.33 0.00 35.82 4.17
215 216 9.559958 CTTTAATCATAACAGTCAATGAACACC 57.440 33.333 3.33 0.00 35.82 4.16
273 274 7.148705 GCCGTTTTCTTTCTTGTGTAAGTTTTT 60.149 33.333 0.00 0.00 35.38 1.94
274 275 6.309494 GCCGTTTTCTTTCTTGTGTAAGTTTT 59.691 34.615 0.00 0.00 35.38 2.43
275 276 5.803461 GCCGTTTTCTTTCTTGTGTAAGTTT 59.197 36.000 0.00 0.00 35.38 2.66
276 277 5.106078 TGCCGTTTTCTTTCTTGTGTAAGTT 60.106 36.000 0.00 0.00 35.38 2.66
277 278 4.396790 TGCCGTTTTCTTTCTTGTGTAAGT 59.603 37.500 0.00 0.00 35.38 2.24
278 279 4.915704 TGCCGTTTTCTTTCTTGTGTAAG 58.084 39.130 0.00 0.00 35.16 2.34
279 280 4.966965 TGCCGTTTTCTTTCTTGTGTAA 57.033 36.364 0.00 0.00 0.00 2.41
280 281 6.811253 ATATGCCGTTTTCTTTCTTGTGTA 57.189 33.333 0.00 0.00 0.00 2.90
281 282 5.705609 ATATGCCGTTTTCTTTCTTGTGT 57.294 34.783 0.00 0.00 0.00 3.72
282 283 5.732647 CGTATATGCCGTTTTCTTTCTTGTG 59.267 40.000 0.00 0.00 0.00 3.33
283 284 5.640357 TCGTATATGCCGTTTTCTTTCTTGT 59.360 36.000 0.00 0.00 0.00 3.16
284 285 6.102006 TCGTATATGCCGTTTTCTTTCTTG 57.898 37.500 0.00 0.00 0.00 3.02
285 286 6.370718 ACTTCGTATATGCCGTTTTCTTTCTT 59.629 34.615 0.00 0.00 0.00 2.52
286 287 5.873164 ACTTCGTATATGCCGTTTTCTTTCT 59.127 36.000 0.00 0.00 0.00 2.52
287 288 5.957796 CACTTCGTATATGCCGTTTTCTTTC 59.042 40.000 0.00 0.00 0.00 2.62
288 289 5.672819 GCACTTCGTATATGCCGTTTTCTTT 60.673 40.000 0.00 0.00 33.06 2.52
289 290 4.201783 GCACTTCGTATATGCCGTTTTCTT 60.202 41.667 0.00 0.00 33.06 2.52
290 291 3.308866 GCACTTCGTATATGCCGTTTTCT 59.691 43.478 0.00 0.00 33.06 2.52
291 292 3.308866 AGCACTTCGTATATGCCGTTTTC 59.691 43.478 0.00 0.00 40.33 2.29
292 293 3.267483 AGCACTTCGTATATGCCGTTTT 58.733 40.909 0.00 0.00 40.33 2.43
293 294 2.901249 AGCACTTCGTATATGCCGTTT 58.099 42.857 0.00 0.00 40.33 3.60
294 295 2.596904 AGCACTTCGTATATGCCGTT 57.403 45.000 0.00 0.00 40.33 4.44
295 296 2.159156 TCAAGCACTTCGTATATGCCGT 60.159 45.455 0.00 0.00 40.33 5.68
296 297 2.469826 TCAAGCACTTCGTATATGCCG 58.530 47.619 0.00 0.00 40.33 5.69
297 298 3.303395 GCTTCAAGCACTTCGTATATGCC 60.303 47.826 3.89 0.00 41.89 4.40
298 299 3.866496 GCTTCAAGCACTTCGTATATGC 58.134 45.455 3.89 0.00 41.89 3.14
311 312 1.398390 CCGGTTGTAGATGCTTCAAGC 59.602 52.381 1.04 1.04 42.82 4.01
312 313 2.673368 GTCCGGTTGTAGATGCTTCAAG 59.327 50.000 0.00 0.00 0.00 3.02
313 314 2.301870 AGTCCGGTTGTAGATGCTTCAA 59.698 45.455 0.00 0.00 0.00 2.69
314 315 1.899814 AGTCCGGTTGTAGATGCTTCA 59.100 47.619 0.00 0.00 0.00 3.02
315 316 2.674796 AGTCCGGTTGTAGATGCTTC 57.325 50.000 0.00 0.00 0.00 3.86
316 317 3.074412 CAAAGTCCGGTTGTAGATGCTT 58.926 45.455 0.00 0.00 0.00 3.91
317 318 2.699954 CAAAGTCCGGTTGTAGATGCT 58.300 47.619 0.00 0.00 0.00 3.79
318 319 1.130561 GCAAAGTCCGGTTGTAGATGC 59.869 52.381 0.00 0.85 0.00 3.91
319 320 2.422597 TGCAAAGTCCGGTTGTAGATG 58.577 47.619 0.00 0.00 0.00 2.90
320 321 2.851263 TGCAAAGTCCGGTTGTAGAT 57.149 45.000 0.00 0.00 0.00 1.98
321 322 2.623878 TTGCAAAGTCCGGTTGTAGA 57.376 45.000 0.00 0.00 0.00 2.59
322 323 3.365969 GGATTTGCAAAGTCCGGTTGTAG 60.366 47.826 18.19 0.00 43.07 2.74
323 324 2.554893 GGATTTGCAAAGTCCGGTTGTA 59.445 45.455 18.19 0.00 43.07 2.41
324 325 1.339929 GGATTTGCAAAGTCCGGTTGT 59.660 47.619 18.19 0.00 43.07 3.32
325 326 2.064573 GGATTTGCAAAGTCCGGTTG 57.935 50.000 18.19 0.00 43.07 3.77
331 332 1.215382 GGGCCGGATTTGCAAAGTC 59.785 57.895 18.19 13.97 0.00 3.01
332 333 2.282783 GGGGCCGGATTTGCAAAGT 61.283 57.895 18.19 5.95 0.00 2.66
333 334 1.948721 GAGGGGCCGGATTTGCAAAG 61.949 60.000 18.19 4.91 0.00 2.77
334 335 1.981853 GAGGGGCCGGATTTGCAAA 60.982 57.895 15.44 15.44 0.00 3.68
335 336 2.362375 GAGGGGCCGGATTTGCAA 60.362 61.111 5.05 0.00 0.00 4.08
336 337 2.721803 TTTGAGGGGCCGGATTTGCA 62.722 55.000 5.05 0.00 0.00 4.08
337 338 1.981853 TTTGAGGGGCCGGATTTGC 60.982 57.895 5.05 0.00 0.00 3.68
338 339 1.890174 GTTTGAGGGGCCGGATTTG 59.110 57.895 5.05 0.00 0.00 2.32
339 340 1.677633 CGTTTGAGGGGCCGGATTT 60.678 57.895 5.05 0.00 0.00 2.17
340 341 2.045340 CGTTTGAGGGGCCGGATT 60.045 61.111 5.05 0.00 0.00 3.01
341 342 4.796495 GCGTTTGAGGGGCCGGAT 62.796 66.667 5.05 0.00 0.00 4.18
347 348 1.248101 ATTTTCGGGCGTTTGAGGGG 61.248 55.000 0.00 0.00 0.00 4.79
348 349 0.170339 GATTTTCGGGCGTTTGAGGG 59.830 55.000 0.00 0.00 0.00 4.30
349 350 1.130561 GAGATTTTCGGGCGTTTGAGG 59.869 52.381 0.00 0.00 0.00 3.86
350 351 2.076863 AGAGATTTTCGGGCGTTTGAG 58.923 47.619 0.00 0.00 0.00 3.02
351 352 1.804151 CAGAGATTTTCGGGCGTTTGA 59.196 47.619 0.00 0.00 0.00 2.69
352 353 1.135689 CCAGAGATTTTCGGGCGTTTG 60.136 52.381 0.00 0.00 34.30 2.93
353 354 1.165270 CCAGAGATTTTCGGGCGTTT 58.835 50.000 0.00 0.00 34.30 3.60
354 355 0.323629 TCCAGAGATTTTCGGGCGTT 59.676 50.000 0.00 0.00 40.58 4.84
355 356 0.108138 CTCCAGAGATTTTCGGGCGT 60.108 55.000 0.00 0.00 40.58 5.68
356 357 0.811616 CCTCCAGAGATTTTCGGGCG 60.812 60.000 0.00 0.00 40.58 6.13
357 358 0.253327 ACCTCCAGAGATTTTCGGGC 59.747 55.000 0.00 0.00 40.58 6.13
358 359 1.555075 TCACCTCCAGAGATTTTCGGG 59.445 52.381 0.00 0.00 41.97 5.14
359 360 2.898705 CTCACCTCCAGAGATTTTCGG 58.101 52.381 0.00 0.00 35.09 4.30
360 361 2.093764 AGCTCACCTCCAGAGATTTTCG 60.094 50.000 0.00 0.00 35.09 3.46
361 362 3.530535 GAGCTCACCTCCAGAGATTTTC 58.469 50.000 9.40 0.00 35.09 2.29
362 363 2.093764 CGAGCTCACCTCCAGAGATTTT 60.094 50.000 15.40 0.00 37.27 1.82
363 364 1.480137 CGAGCTCACCTCCAGAGATTT 59.520 52.381 15.40 0.00 37.27 2.17
364 365 1.110442 CGAGCTCACCTCCAGAGATT 58.890 55.000 15.40 0.00 37.27 2.40
365 366 0.754957 CCGAGCTCACCTCCAGAGAT 60.755 60.000 15.40 0.00 37.27 2.75
366 367 1.379176 CCGAGCTCACCTCCAGAGA 60.379 63.158 15.40 0.00 37.27 3.10
367 368 0.754957 ATCCGAGCTCACCTCCAGAG 60.755 60.000 15.40 0.00 37.27 3.35
368 369 1.039785 CATCCGAGCTCACCTCCAGA 61.040 60.000 15.40 0.00 37.27 3.86
369 370 1.039785 TCATCCGAGCTCACCTCCAG 61.040 60.000 15.40 0.00 37.27 3.86
370 371 1.000359 TCATCCGAGCTCACCTCCA 60.000 57.895 15.40 0.00 37.27 3.86
371 372 1.439644 GTCATCCGAGCTCACCTCC 59.560 63.158 15.40 0.00 37.27 4.30
372 373 1.064946 CGTCATCCGAGCTCACCTC 59.935 63.158 15.40 0.00 39.56 3.85
373 374 2.418910 CCGTCATCCGAGCTCACCT 61.419 63.158 15.40 0.00 39.56 4.00
374 375 2.105128 CCGTCATCCGAGCTCACC 59.895 66.667 15.40 0.00 39.56 4.02
375 376 1.064946 CTCCGTCATCCGAGCTCAC 59.935 63.158 15.40 2.59 39.56 3.51
376 377 2.121538 CCTCCGTCATCCGAGCTCA 61.122 63.158 15.40 0.00 39.56 4.26
377 378 2.725008 CCTCCGTCATCCGAGCTC 59.275 66.667 2.73 2.73 39.56 4.09
378 379 2.835431 CCCTCCGTCATCCGAGCT 60.835 66.667 0.00 0.00 39.56 4.09
379 380 2.833582 TCCCTCCGTCATCCGAGC 60.834 66.667 0.00 0.00 39.56 5.03
380 381 1.454111 ACTCCCTCCGTCATCCGAG 60.454 63.158 0.00 0.00 39.56 4.63
381 382 1.753078 CACTCCCTCCGTCATCCGA 60.753 63.158 0.00 0.00 39.56 4.55
382 383 2.786495 CCACTCCCTCCGTCATCCG 61.786 68.421 0.00 0.00 0.00 4.18
383 384 1.381327 TCCACTCCCTCCGTCATCC 60.381 63.158 0.00 0.00 0.00 3.51
384 385 1.395826 CCTCCACTCCCTCCGTCATC 61.396 65.000 0.00 0.00 0.00 2.92
385 386 1.381872 CCTCCACTCCCTCCGTCAT 60.382 63.158 0.00 0.00 0.00 3.06
386 387 2.037367 CCTCCACTCCCTCCGTCA 59.963 66.667 0.00 0.00 0.00 4.35
387 388 0.903454 TTTCCTCCACTCCCTCCGTC 60.903 60.000 0.00 0.00 0.00 4.79
388 389 0.905337 CTTTCCTCCACTCCCTCCGT 60.905 60.000 0.00 0.00 0.00 4.69
389 390 0.614979 TCTTTCCTCCACTCCCTCCG 60.615 60.000 0.00 0.00 0.00 4.63
390 391 1.199615 CTCTTTCCTCCACTCCCTCC 58.800 60.000 0.00 0.00 0.00 4.30
391 392 1.199615 CCTCTTTCCTCCACTCCCTC 58.800 60.000 0.00 0.00 0.00 4.30
392 393 0.793617 TCCTCTTTCCTCCACTCCCT 59.206 55.000 0.00 0.00 0.00 4.20
393 394 1.199615 CTCCTCTTTCCTCCACTCCC 58.800 60.000 0.00 0.00 0.00 4.30
394 395 1.552792 CACTCCTCTTTCCTCCACTCC 59.447 57.143 0.00 0.00 0.00 3.85
395 396 2.028567 CACACTCCTCTTTCCTCCACTC 60.029 54.545 0.00 0.00 0.00 3.51
396 397 1.974236 CACACTCCTCTTTCCTCCACT 59.026 52.381 0.00 0.00 0.00 4.00
397 398 1.971357 TCACACTCCTCTTTCCTCCAC 59.029 52.381 0.00 0.00 0.00 4.02
398 399 2.398754 TCACACTCCTCTTTCCTCCA 57.601 50.000 0.00 0.00 0.00 3.86
399 400 2.635427 ACTTCACACTCCTCTTTCCTCC 59.365 50.000 0.00 0.00 0.00 4.30
400 401 3.322254 TCACTTCACACTCCTCTTTCCTC 59.678 47.826 0.00 0.00 0.00 3.71
401 402 3.309296 TCACTTCACACTCCTCTTTCCT 58.691 45.455 0.00 0.00 0.00 3.36
402 403 3.070302 ACTCACTTCACACTCCTCTTTCC 59.930 47.826 0.00 0.00 0.00 3.13
403 404 4.329462 ACTCACTTCACACTCCTCTTTC 57.671 45.455 0.00 0.00 0.00 2.62
404 405 4.282195 CCTACTCACTTCACACTCCTCTTT 59.718 45.833 0.00 0.00 0.00 2.52
405 406 3.829601 CCTACTCACTTCACACTCCTCTT 59.170 47.826 0.00 0.00 0.00 2.85
406 407 3.426615 CCTACTCACTTCACACTCCTCT 58.573 50.000 0.00 0.00 0.00 3.69
407 408 2.494073 CCCTACTCACTTCACACTCCTC 59.506 54.545 0.00 0.00 0.00 3.71
408 409 2.158295 ACCCTACTCACTTCACACTCCT 60.158 50.000 0.00 0.00 0.00 3.69
409 410 2.249139 ACCCTACTCACTTCACACTCC 58.751 52.381 0.00 0.00 0.00 3.85
410 411 4.058817 CAAACCCTACTCACTTCACACTC 58.941 47.826 0.00 0.00 0.00 3.51
411 412 3.181454 CCAAACCCTACTCACTTCACACT 60.181 47.826 0.00 0.00 0.00 3.55
412 413 3.139077 CCAAACCCTACTCACTTCACAC 58.861 50.000 0.00 0.00 0.00 3.82
413 414 2.775384 ACCAAACCCTACTCACTTCACA 59.225 45.455 0.00 0.00 0.00 3.58
414 415 3.400255 GACCAAACCCTACTCACTTCAC 58.600 50.000 0.00 0.00 0.00 3.18
415 416 2.370849 GGACCAAACCCTACTCACTTCA 59.629 50.000 0.00 0.00 0.00 3.02
416 417 2.612221 CGGACCAAACCCTACTCACTTC 60.612 54.545 0.00 0.00 0.00 3.01
417 418 1.346722 CGGACCAAACCCTACTCACTT 59.653 52.381 0.00 0.00 0.00 3.16
418 419 0.974383 CGGACCAAACCCTACTCACT 59.026 55.000 0.00 0.00 0.00 3.41
419 420 0.036671 CCGGACCAAACCCTACTCAC 60.037 60.000 0.00 0.00 0.00 3.51
420 421 1.833787 GCCGGACCAAACCCTACTCA 61.834 60.000 5.05 0.00 0.00 3.41
421 422 1.078637 GCCGGACCAAACCCTACTC 60.079 63.158 5.05 0.00 0.00 2.59
422 423 2.951101 CGCCGGACCAAACCCTACT 61.951 63.158 5.05 0.00 0.00 2.57
423 424 2.435410 CGCCGGACCAAACCCTAC 60.435 66.667 5.05 0.00 0.00 3.18
424 425 2.604079 TCGCCGGACCAAACCCTA 60.604 61.111 5.05 0.00 0.00 3.53
425 426 4.016706 CTCGCCGGACCAAACCCT 62.017 66.667 5.05 0.00 0.00 4.34
439 440 1.802337 TATTCGTCCCCATCCGCTCG 61.802 60.000 0.00 0.00 0.00 5.03
440 441 0.608640 ATATTCGTCCCCATCCGCTC 59.391 55.000 0.00 0.00 0.00 5.03
441 442 1.933021 TATATTCGTCCCCATCCGCT 58.067 50.000 0.00 0.00 0.00 5.52
442 443 2.093658 ACATATATTCGTCCCCATCCGC 60.094 50.000 0.00 0.00 0.00 5.54
443 444 3.194755 TCACATATATTCGTCCCCATCCG 59.805 47.826 0.00 0.00 0.00 4.18
444 445 4.819105 TCACATATATTCGTCCCCATCC 57.181 45.455 0.00 0.00 0.00 3.51
445 446 6.878923 TGATTTCACATATATTCGTCCCCATC 59.121 38.462 0.00 0.00 0.00 3.51
446 447 6.778821 TGATTTCACATATATTCGTCCCCAT 58.221 36.000 0.00 0.00 0.00 4.00
447 448 6.181206 TGATTTCACATATATTCGTCCCCA 57.819 37.500 0.00 0.00 0.00 4.96
448 449 5.643777 CCTGATTTCACATATATTCGTCCCC 59.356 44.000 0.00 0.00 0.00 4.81
449 450 6.147821 CACCTGATTTCACATATATTCGTCCC 59.852 42.308 0.00 0.00 0.00 4.46
450 451 6.147821 CCACCTGATTTCACATATATTCGTCC 59.852 42.308 0.00 0.00 0.00 4.79
451 452 6.147821 CCCACCTGATTTCACATATATTCGTC 59.852 42.308 0.00 0.00 0.00 4.20
452 453 5.997746 CCCACCTGATTTCACATATATTCGT 59.002 40.000 0.00 0.00 0.00 3.85
453 454 5.106555 GCCCACCTGATTTCACATATATTCG 60.107 44.000 0.00 0.00 0.00 3.34
454 455 6.006449 AGCCCACCTGATTTCACATATATTC 58.994 40.000 0.00 0.00 0.00 1.75
455 456 5.957132 AGCCCACCTGATTTCACATATATT 58.043 37.500 0.00 0.00 0.00 1.28
456 457 5.589367 AGCCCACCTGATTTCACATATAT 57.411 39.130 0.00 0.00 0.00 0.86
457 458 5.513094 GCTAGCCCACCTGATTTCACATATA 60.513 44.000 2.29 0.00 0.00 0.86
458 459 3.959495 AGCCCACCTGATTTCACATAT 57.041 42.857 0.00 0.00 0.00 1.78
459 460 3.433598 GCTAGCCCACCTGATTTCACATA 60.434 47.826 2.29 0.00 0.00 2.29
460 461 2.684927 GCTAGCCCACCTGATTTCACAT 60.685 50.000 2.29 0.00 0.00 3.21
461 462 1.340017 GCTAGCCCACCTGATTTCACA 60.340 52.381 2.29 0.00 0.00 3.58
462 463 1.340017 TGCTAGCCCACCTGATTTCAC 60.340 52.381 13.29 0.00 0.00 3.18
463 464 0.991146 TGCTAGCCCACCTGATTTCA 59.009 50.000 13.29 0.00 0.00 2.69
464 465 1.952296 CATGCTAGCCCACCTGATTTC 59.048 52.381 13.29 0.00 0.00 2.17
465 466 1.565759 TCATGCTAGCCCACCTGATTT 59.434 47.619 13.29 0.00 0.00 2.17
466 467 1.142465 CTCATGCTAGCCCACCTGATT 59.858 52.381 13.29 0.00 0.00 2.57
467 468 0.763652 CTCATGCTAGCCCACCTGAT 59.236 55.000 13.29 0.00 0.00 2.90
468 469 1.976132 GCTCATGCTAGCCCACCTGA 61.976 60.000 13.29 6.57 36.45 3.86
469 470 1.525535 GCTCATGCTAGCCCACCTG 60.526 63.158 13.29 2.31 36.45 4.00
470 471 2.914289 GCTCATGCTAGCCCACCT 59.086 61.111 13.29 0.00 36.45 4.00
476 477 1.300542 GGACTCGGCTCATGCTAGC 60.301 63.158 8.10 8.10 41.99 3.42
477 478 1.007964 CGGACTCGGCTCATGCTAG 60.008 63.158 0.00 0.00 39.59 3.42
478 479 1.453197 TCGGACTCGGCTCATGCTA 60.453 57.895 0.00 0.00 39.59 3.49
479 480 2.755876 TCGGACTCGGCTCATGCT 60.756 61.111 0.00 0.00 39.59 3.79
480 481 2.583593 GTCGGACTCGGCTCATGC 60.584 66.667 0.00 0.00 38.10 4.06
481 482 2.278206 CGTCGGACTCGGCTCATG 60.278 66.667 6.57 0.00 39.11 3.07
482 483 2.750637 ACGTCGGACTCGGCTCAT 60.751 61.111 6.57 0.00 39.11 2.90
483 484 3.733960 CACGTCGGACTCGGCTCA 61.734 66.667 6.57 0.00 39.11 4.26
484 485 4.477975 CCACGTCGGACTCGGCTC 62.478 72.222 6.57 0.00 39.11 4.70
509 510 1.536331 GAGGATATGAGACGTCCGGAC 59.464 57.143 25.28 25.28 37.12 4.79
510 511 1.420514 AGAGGATATGAGACGTCCGGA 59.579 52.381 13.01 0.00 37.12 5.14
511 512 1.898902 AGAGGATATGAGACGTCCGG 58.101 55.000 13.01 0.00 37.12 5.14
512 513 3.992260 AAAGAGGATATGAGACGTCCG 57.008 47.619 13.01 0.00 37.12 4.79
513 514 9.360093 CAAATATAAAGAGGATATGAGACGTCC 57.640 37.037 13.01 4.42 0.00 4.79
514 515 9.360093 CCAAATATAAAGAGGATATGAGACGTC 57.640 37.037 7.70 7.70 0.00 4.34
515 516 8.314751 CCCAAATATAAAGAGGATATGAGACGT 58.685 37.037 0.00 0.00 0.00 4.34
516 517 7.278868 GCCCAAATATAAAGAGGATATGAGACG 59.721 40.741 0.00 0.00 0.00 4.18
517 518 8.325046 AGCCCAAATATAAAGAGGATATGAGAC 58.675 37.037 0.00 0.00 0.00 3.36
518 519 8.324306 CAGCCCAAATATAAAGAGGATATGAGA 58.676 37.037 0.00 0.00 0.00 3.27
519 520 7.555554 CCAGCCCAAATATAAAGAGGATATGAG 59.444 40.741 0.00 0.00 0.00 2.90
520 521 7.239563 TCCAGCCCAAATATAAAGAGGATATGA 59.760 37.037 0.00 0.00 0.00 2.15
521 522 7.405292 TCCAGCCCAAATATAAAGAGGATATG 58.595 38.462 0.00 0.00 0.00 1.78
522 523 7.588866 TCCAGCCCAAATATAAAGAGGATAT 57.411 36.000 0.00 0.00 0.00 1.63
523 524 7.588866 ATCCAGCCCAAATATAAAGAGGATA 57.411 36.000 0.00 0.00 30.88 2.59
524 525 5.930209 TCCAGCCCAAATATAAAGAGGAT 57.070 39.130 0.00 0.00 0.00 3.24
525 526 5.930209 ATCCAGCCCAAATATAAAGAGGA 57.070 39.130 0.00 0.00 0.00 3.71
526 527 7.405292 TCATATCCAGCCCAAATATAAAGAGG 58.595 38.462 0.00 0.00 0.00 3.69
527 528 7.555554 CCTCATATCCAGCCCAAATATAAAGAG 59.444 40.741 0.00 0.00 0.00 2.85
528 529 7.405292 CCTCATATCCAGCCCAAATATAAAGA 58.595 38.462 0.00 0.00 0.00 2.52
529 530 6.604795 CCCTCATATCCAGCCCAAATATAAAG 59.395 42.308 0.00 0.00 0.00 1.85
530 531 6.493166 CCCTCATATCCAGCCCAAATATAAA 58.507 40.000 0.00 0.00 0.00 1.40
531 532 5.044179 CCCCTCATATCCAGCCCAAATATAA 60.044 44.000 0.00 0.00 0.00 0.98
532 533 4.478317 CCCCTCATATCCAGCCCAAATATA 59.522 45.833 0.00 0.00 0.00 0.86
533 534 3.270433 CCCCTCATATCCAGCCCAAATAT 59.730 47.826 0.00 0.00 0.00 1.28
534 535 2.649312 CCCCTCATATCCAGCCCAAATA 59.351 50.000 0.00 0.00 0.00 1.40
535 536 1.430464 CCCCTCATATCCAGCCCAAAT 59.570 52.381 0.00 0.00 0.00 2.32
536 537 0.852842 CCCCTCATATCCAGCCCAAA 59.147 55.000 0.00 0.00 0.00 3.28
537 538 0.328450 ACCCCTCATATCCAGCCCAA 60.328 55.000 0.00 0.00 0.00 4.12
538 539 1.061905 CACCCCTCATATCCAGCCCA 61.062 60.000 0.00 0.00 0.00 5.36
539 540 1.763770 CACCCCTCATATCCAGCCC 59.236 63.158 0.00 0.00 0.00 5.19
540 541 1.073897 GCACCCCTCATATCCAGCC 59.926 63.158 0.00 0.00 0.00 4.85
541 542 1.073897 GGCACCCCTCATATCCAGC 59.926 63.158 0.00 0.00 0.00 4.85
542 543 1.372683 CGGCACCCCTCATATCCAG 59.627 63.158 0.00 0.00 0.00 3.86
543 544 2.146724 CCGGCACCCCTCATATCCA 61.147 63.158 0.00 0.00 0.00 3.41
544 545 2.113243 GACCGGCACCCCTCATATCC 62.113 65.000 0.00 0.00 0.00 2.59
545 546 1.371558 GACCGGCACCCCTCATATC 59.628 63.158 0.00 0.00 0.00 1.63
546 547 1.383943 TGACCGGCACCCCTCATAT 60.384 57.895 0.00 0.00 0.00 1.78
547 548 2.039787 TGACCGGCACCCCTCATA 59.960 61.111 0.00 0.00 0.00 2.15
548 549 3.402681 CTGACCGGCACCCCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
568 569 4.436998 GACGGGCCTCAGTGTCCG 62.437 72.222 0.84 2.05 46.95 4.79
569 570 2.997897 AGACGGGCCTCAGTGTCC 60.998 66.667 0.84 0.00 31.75 4.02
570 571 1.816863 TTCAGACGGGCCTCAGTGTC 61.817 60.000 0.84 0.49 0.00 3.67
571 572 1.821061 CTTCAGACGGGCCTCAGTGT 61.821 60.000 0.84 0.00 0.00 3.55
572 573 1.079543 CTTCAGACGGGCCTCAGTG 60.080 63.158 0.84 0.00 0.00 3.66
573 574 2.948720 GCTTCAGACGGGCCTCAGT 61.949 63.158 0.84 0.00 0.00 3.41
574 575 2.125350 GCTTCAGACGGGCCTCAG 60.125 66.667 0.84 0.00 0.00 3.35
578 579 2.514824 GGATGCTTCAGACGGGCC 60.515 66.667 0.00 0.00 0.00 5.80
582 583 2.159366 ACTTAGACGGATGCTTCAGACG 60.159 50.000 6.74 1.49 0.00 4.18
596 597 6.532657 TCCGGTCATAAAATTTCGACTTAGAC 59.467 38.462 0.00 0.00 0.00 2.59
600 601 5.243207 AGTCCGGTCATAAAATTTCGACTT 58.757 37.500 0.00 0.00 0.00 3.01
604 605 5.560183 GCCATAGTCCGGTCATAAAATTTCG 60.560 44.000 0.00 0.00 0.00 3.46
612 613 2.347630 CGGCCATAGTCCGGTCATA 58.652 57.895 2.24 0.00 42.99 2.15
613 614 3.138625 CGGCCATAGTCCGGTCAT 58.861 61.111 2.24 0.00 42.99 3.06
639 640 2.434359 CTCCTGAAACGCCCGGAC 60.434 66.667 0.73 0.00 0.00 4.79
673 674 0.321671 TGAGCTGTGTGTAAGAGGGC 59.678 55.000 0.00 0.00 0.00 5.19
679 680 3.304726 CGAAGACTCTGAGCTGTGTGTAA 60.305 47.826 4.19 0.00 0.00 2.41
680 681 2.226674 CGAAGACTCTGAGCTGTGTGTA 59.773 50.000 4.19 0.00 0.00 2.90
681 682 1.000827 CGAAGACTCTGAGCTGTGTGT 60.001 52.381 4.19 0.00 0.00 3.72
682 683 1.268079 TCGAAGACTCTGAGCTGTGTG 59.732 52.381 4.19 0.00 0.00 3.82
716 717 2.749621 CCTGTGACTGAGCATTTTACCC 59.250 50.000 0.00 0.00 0.00 3.69
719 720 3.423539 AGCCTGTGACTGAGCATTTTA 57.576 42.857 5.93 0.00 0.00 1.52
724 725 1.005748 CGAAGCCTGTGACTGAGCA 60.006 57.895 5.93 0.00 0.00 4.26
727 728 1.905637 TAGTCGAAGCCTGTGACTGA 58.094 50.000 8.85 0.00 35.51 3.41
728 729 2.724977 TTAGTCGAAGCCTGTGACTG 57.275 50.000 8.85 0.00 35.51 3.51
729 730 3.746045 TTTTAGTCGAAGCCTGTGACT 57.254 42.857 4.72 4.72 35.51 3.41
730 731 3.808174 ACTTTTTAGTCGAAGCCTGTGAC 59.192 43.478 0.00 0.00 0.00 3.67
917 921 4.100189 GGGACTGAAGTAGACATATGTGCT 59.900 45.833 14.43 12.30 0.00 4.40
1084 1088 2.649034 CACGTACCTCACACCGCT 59.351 61.111 0.00 0.00 0.00 5.52
1196 1203 0.324285 CTCCAGCTTCTTCAGGCAGT 59.676 55.000 0.00 0.00 0.00 4.40
1301 1308 1.604593 AGGCTGTTGGCGAATTGCT 60.605 52.632 8.09 0.00 45.43 3.91
1305 1312 2.361610 CCCAGGCTGTTGGCGAAT 60.362 61.111 14.43 0.00 44.18 3.34
1311 1318 0.622665 AGAAGATCCCCAGGCTGTTG 59.377 55.000 14.43 3.88 0.00 3.33
1455 1462 2.427245 CCACTCCTCGGCCCTAGTG 61.427 68.421 12.29 12.29 39.22 2.74
1458 1465 1.457643 CATCCACTCCTCGGCCCTA 60.458 63.158 0.00 0.00 0.00 3.53
1540 1547 1.876156 GTTGCACTTCACCTTCCTCAG 59.124 52.381 0.00 0.00 0.00 3.35
1542 1549 1.967319 TGTTGCACTTCACCTTCCTC 58.033 50.000 0.00 0.00 0.00 3.71
1549 1556 2.159254 TGGCTTTCTTGTTGCACTTCAC 60.159 45.455 0.00 0.00 0.00 3.18
1555 1562 3.023119 TCTTCTTGGCTTTCTTGTTGCA 58.977 40.909 0.00 0.00 0.00 4.08
1672 1679 9.256477 CTCAAAACATAAGCATATGCAATGAAT 57.744 29.630 32.80 23.22 42.26 2.57
1714 1721 3.535280 TGCAGCTTATGAACCACGATA 57.465 42.857 0.00 0.00 0.00 2.92
1715 1722 2.401583 TGCAGCTTATGAACCACGAT 57.598 45.000 0.00 0.00 0.00 3.73
1716 1723 2.279741 GATGCAGCTTATGAACCACGA 58.720 47.619 0.00 0.00 0.00 4.35
1717 1724 1.331756 GGATGCAGCTTATGAACCACG 59.668 52.381 0.22 0.00 0.00 4.94
1782 1791 5.923684 GGATGTTTGTTTTCCTGCGAAATTA 59.076 36.000 0.00 0.00 37.81 1.40
1885 1901 6.429692 TGCTAACAGAAAGCAAGCATTAAGTA 59.570 34.615 0.00 0.00 46.57 2.24
1940 1956 1.734655 AGAAGTCCAAGGAGGCAAGA 58.265 50.000 0.00 0.00 37.29 3.02
2005 2021 3.966665 AGGATGTTTGTGGTGGAAACAAT 59.033 39.130 0.00 0.00 44.32 2.71
2006 2022 3.370104 AGGATGTTTGTGGTGGAAACAA 58.630 40.909 0.00 0.00 44.32 2.83
2007 2023 3.025322 AGGATGTTTGTGGTGGAAACA 57.975 42.857 0.00 0.00 45.01 2.83
2008 2024 5.010617 ACATTAGGATGTTTGTGGTGGAAAC 59.989 40.000 0.00 0.00 43.92 2.78
2040 3133 6.710744 ACAGGCTTCGTAAGGATAAATAATGG 59.289 38.462 0.00 0.00 38.47 3.16
2041 3134 7.730364 ACAGGCTTCGTAAGGATAAATAATG 57.270 36.000 0.00 0.00 38.47 1.90
2042 3135 7.990886 TGAACAGGCTTCGTAAGGATAAATAAT 59.009 33.333 0.00 0.00 38.47 1.28
2045 3140 5.741011 TGAACAGGCTTCGTAAGGATAAAT 58.259 37.500 0.00 0.00 38.47 1.40
2064 3159 0.318762 ACTGACTCGCCTTCCTGAAC 59.681 55.000 0.00 0.00 0.00 3.18
2067 3162 0.671781 CCAACTGACTCGCCTTCCTG 60.672 60.000 0.00 0.00 0.00 3.86
2070 3165 0.249911 ACACCAACTGACTCGCCTTC 60.250 55.000 0.00 0.00 0.00 3.46
2105 3200 8.879427 ATAAGTACTTGCATTCTAAAACCCTT 57.121 30.769 18.56 0.00 0.00 3.95
2139 3234 3.330720 ACGGGGCTTGGGAAGGAG 61.331 66.667 0.00 0.00 0.00 3.69
2141 3236 4.426313 GGACGGGGCTTGGGAAGG 62.426 72.222 0.00 0.00 0.00 3.46
2145 3240 0.979187 TACTAAGGACGGGGCTTGGG 60.979 60.000 0.00 0.00 0.00 4.12
2171 3266 7.493971 GTGTATGCTGAGAAAATGACTCTACAT 59.506 37.037 0.00 0.00 36.00 2.29
2226 3321 2.166664 ACTGCATCGTAAAGAGGTCTCC 59.833 50.000 0.00 0.00 32.37 3.71
2244 3346 0.752658 TGAGGTGGGATGCGATACTG 59.247 55.000 0.00 0.00 0.00 2.74
2245 3347 1.620819 GATGAGGTGGGATGCGATACT 59.379 52.381 0.00 0.00 0.00 2.12
2394 3497 5.537188 GCCCTAATCAATGTTGTTTTCACA 58.463 37.500 0.00 0.00 0.00 3.58
2400 3503 2.423538 GCTCGCCCTAATCAATGTTGTT 59.576 45.455 0.00 0.00 0.00 2.83
2402 3505 1.334869 GGCTCGCCCTAATCAATGTTG 59.665 52.381 0.00 0.00 0.00 3.33
2449 3553 5.538118 CTTGGAATAAAACCCTTGTTGGAC 58.462 41.667 0.00 0.00 38.35 4.02
2456 3560 8.528044 TTTATATCGCTTGGAATAAAACCCTT 57.472 30.769 0.00 0.00 0.00 3.95
2500 3605 8.638565 CCGAATGCATTTTTGTAAACTTCTTAG 58.361 33.333 14.33 0.00 0.00 2.18
2513 3618 4.466015 ACCTTGGTATCCGAATGCATTTTT 59.534 37.500 14.33 1.79 0.00 1.94
2526 3631 8.437575 TCATTCCCTTTTAGATACCTTGGTATC 58.562 37.037 24.72 24.72 36.77 2.24
2603 3708 9.183368 AGACTGAACTCTTCTTCTTTGAAAAAT 57.817 29.630 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.