>input_sequence_72912
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-------------------------------------------ATGGAGATCATCGCCACCGCGGCTCGCGCGGAGATCG
ACAGCTCCCGGCCGTTCCAGTCTGTCAGGGAGGCCGTCGAGGTCTTCAGCGGTGTGAGGTACGTGGCAGGTTGCGGCG--
-GCAGCTCCCGTGGCAGCAGCGCATCCAGCTCCAAGTTCAGCGTGCCACGGGCGGCTTCCCCGCCGTCATCCACGTTGCT
GGACTGCCTGAAGAAGCTGGAGGTCGACCTCGCGGAGTCCAGGAGCGAGCTGGCGCAACTCAAGCAGAGGCAGTCGCAGA
TGGAGATGGCCGTCTCCAGCATCGGCAAGCAATTCGCCAACAGCCTGGGGATCTTCTCCGACTCCGTGGAGCTCAAGAAA
GGGAAGGAGCTCGCCGTCGTCGAGGTCGGCAGGACCGCGATTGTCGGCGCAGAGGAGGAATACGGCGATGGCCGGGTTCG
CAGCGATCTATGGGTCGACGACACTAGGGCCGAGGAGTGGATGGCCAGCCTCGAGTACCTGCCGAGCCTCTCGGAGGCGC
TGACAATCAAGATGGTCGACGATGACCTGAGGAAGGTGAAGTGCAACAAGAAAGCCAAGAAGAAGCAGCACAAGAAGCAG
AGGAAGAATGCGGTCTCACTCGTTGGAGGCATCTTCTCCAGCAAGTGCAGGTGA--------------------------
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>chr7D_1_TraesCS7D01G329800
TTTATGTTTTATGGTGTTTGTTAAAGTTGCTCGTATTTTTTTACAACGGAGGCTCATGACGTCCGCAACAAAGCCAACAA
CCGGATCGAAATTACAGTGAGCAACAAAGGAGAGGCGATAACGACAGCGCGCATTCGGCTCGCTTCAGTGTAGTCGTCGT
TAGGTAGTCTACGGATCTGGATATAGTTTTTTTGAACATATTTATTATTATTTTTGGTGTTCATTGACTGTTATGATTAA
AGATGAATAGATAGAAAATTTTCTCGCAAAAAAAAAAACTTACACAAGAAAGAAAACGGCATATACGAAGTGCTTGAAGC
ATCTACAACCGGACTTTGCAAATCCGGCCCCTCAAACGCCCGAAAATCTCTGGAGGTGAGCTCGGATGACGGAGGGAGTG
GAGGAAAGAGGAGTGTGAAGTGAGTAGGGTTTGGTCCGGCGAGCGGATGGGGACGAATATATGTGAAATCAGGTGGGCTA
GCATGAGCCGAGTCCGACGTGGCGGACGCGTCCGGACGTCTCATATCCTCTTTATATTTGGGCTGGATATGAGGGGTGCC
GGTCAGCGCGGACACTGAGGCCCGTCTGAAGCATCCGTCTAAGTCGAAATTTTATGACCGGACTATGGCCGGGTGACCCG
TCCGGGCGTTTCAGGAGTGTTCGGGGCGCGCCGGCCCTCTTACACACAGCTCAGAGTCTTCGACCACTTGTAAAAAGGGT
AAAATGCTCAGTCACAGGCTTCGACTAAAAAGTGTG---GTTGCTCTAGAAGGCCTCTTTATGCTGCCTTTGGTCGCAAG
TCCCCGTCTTCCCCTCTACCCGCCGGTTTTACTTGACGCCGACACAAGGCCTGCATTCTCATGTTACTCGGGCGGGTTGG
TGTTTGAACTTTGAAGTAGAAGCAAAGACAAAACCAAGAAAGCACATATGTCTACTTCAGTCCCCACACTCACATTCTTG
CCATGCAATCCCATCAGTCCATCAATCACCATCTCAACCATTCATGGAGATCATCGCCACCGCGGCTCGCGCGGAGATCG
ACAGCTCCCGGCCGTTCCAGTCTGTCAGGGAGGCCGTCGAGGTCTTCAGCGGTGTGAGGTACGTGGCAGGTTGCGGCG--
-GCAGCTCCCGTGGCAGCAGCGCATCCAGCTCCAAGTTCAGCGTGCCACGGGCGGCTTCCCCGCCGTCATCCACGTTGCT
GGACTGCCTGAAGAAGCTGGAGGTCGACCTCGCGGAGTCCAGGAGCGAGCTGGCGCAACTCAAGCAGAGGCAGTCGCAGA
TGGAGATGGCCGTCTCCAGCATCGGCAAGCAATTCGCCAACAGCCTGGGGATCTTCTCCGACTCCGTGGAGCTCAAGAAA
GGGAAGGAGCTCGCCGTCGTCGAGGTCGGCAGGACCGCGATTGTCGGCGCAGAGGAGGAATACGGCGATGGCCGGGTTCG
CAGCGATCTATGGGTCGACGACACTAGGGCCGAGGAGTGGATGGCCAGCCTCGAGTACCTGCCGAGCCTCTCGGAGGCGC
TGACAATCAAGATGGTCGACGATGACCTGAGGAAGGTGAAGTGCAACAAGAAAGCCAAGAAGAAGCAGCACAAGAAGCAG
AGGAAGAATGCGGTCTCACTCGTTGGAGGCATCTTCTCCAGCAAGTGCAGGTGATCGGAGGCAACAGTTTTTTGTTTTAT
TCATTGCATATGCTTATGTTTTGAGGAGTGTCCATTTGTCTATC-GTGGTTCATAAGCTGCATCCTGCAGTAGTTTACAT
AGCGTGTGAAGA-CACTGTTTGGAGCGTGGTAATTTCGCAGGAAAACAAACATCCATTCTCATCGGATTTGGGGTTTCCT
ACGAAATTCGTGCGAGAGCCTTACCATCCAAA-------TAGGACTTTTGATTTTGTTTTTACTTAATGCTTGCTTTCTG
TTAGCAAATTAATAGTATTTGGAATTTCAATTACTTCTTGCCTCCTTGGACTTCTATTCGCGTACATTTTCAGACATTGC
ATATATTAACAGAGAACTTCATTG--------------------------------------------------------
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-------------------------------------------------------------TTTCCACCACAAACATCCT
AATGTGAAAAAACCA--TTATTTATCCTTACGAAGCCTGTTCAGGAAGGCGAGTCAGTTGGTGTTCCCTAAACCTAAGAA
AGGGTTTTAGAATGCAAGTACTTATCCTAAGCACTCCTTCCCAAGCCCCGTCCTTAGTAAGTATCATGTAGAGTCATTTT
CTCAGCATACACTTATTTTTAATATCGATGTCTTCCACCCGGAGACC-------TCTTTACGATGCAGTATCGCATCCCA
CCTCATCAGGCCTTATTTAGGCTTGTGTTTATTAGAATGTCAA-TAAATCTGGATCTTTACTTCTTTAGTAATTCAATAT
TTTCCTCACCCTTTTAGGTATTTCAAAAAGGAGGATAACATGAACATTAATAAACTTGTGAAAACAACATTGATTAGGGC
GAGCCTTG-CCCCACAAGACATAAGCTTACCTGTCCAACAAGGGTTTTAT-TCCAAGCGATATAAAATACATTTTCATTC
CTTGCTAAGAAGTTTACAAAAATGCATTCGGATACCAAGGTATCTAAAAGGGAATGAGCCAATCTCGCAACCAAAAAGTT
GTCTATACTAATTCTCTTCCTCTCTAGATTTTTCAAAGAAGAAGAGTTCAGTCTCGTGGAAGTTCATTTTAA
>chr7A_576
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---------------TGAAGCCTGTCTGAAGCATCCTTCTGAGTTGAAATTTCGTAATCGGACCATGGCCGGACGACCCA
TCCGGGCGTTT-----------GGGGCGCGCCGTCCCTC----ACACAGCTCACAGTCTTCGACCACTTGTAAAAAAGGA
AAAAAGC----TCACAGGCTTCGACTAAAAAGTGTG---GTTGCTCTAGAAGGCCTCTTTATGCTGCCTTTGGTCGCAAG
TCCCCGTCTTCCCCTCTACCCGCCGGTTTTACTTGACGCCGACACAAGGCCTGCATTCTCATGTTACTCGGGCGGGTTGG
TGTTTGAACTTTGAAGTAGAAGCAAAGACAAAACCAAGAACGCACATATGTCTACTTCAGTCCCCACTCTCACATTCTTG
CCATGCAATCCCATCAGTCCATCAAACACCATCTGAACCATTCATGGAGATCACCGCCACCACGGCCCGCGGGGAGATCG
ACAGCACCCGGCCGTTCCAGTCTGTCAGGGAGGCCGTCGAGGTCTTCGGTGGCGTGAGGCGCGTCGCAGGCTGCGGCGAC
GGCAGCTCATGTGGCAGTAGCGCATCCAGCTCCAAGTTCAGCGCGCCACGGGCGGCTTCCCCGCCGTCATCCACGTTGCT
GGGCTGCCTGAAGAAGCTGGAGGTCGACCCCGCGGAGTCCAGGAGCGAGCTGGCGCAACTCAAGCAGAGGCAGTCGCAGA
TGGAGATGGCCGTCTCCAGCATCGGCATGCAGTTCGCAAACAGCCTGGGGGTCTTCTCCGACTCCGTGGAGCTCAAGAAA
GGGAAGGAGCTCGCCGTCGTCGACGTCGGCAGGACCGCGATGGTCGGCGCAGAGGAGGAATACGGCGATGGCCGGGTTCG
CAGCGATCTATGGGTCGACGAGACGAGGGCCGAGGAGTGGATGGCCAGCCTCGAGTACCTGCCCAGCCTCTCGGAGGCGC
TGACAATCAAGATGGTCGATGATGACATAAGGAAGATGAAGAGCAGCAAGAAAGCCAAGAAGAAGCAGCACAAGAAGCAG
AGGAAGAATGCGGTCTCACTCGTCGGAGGCATCTTCTCGAGCAAGTGCAGGTGATCGGAGGCAACCGTATTTTGTTTTGT
TCATCGCATATGCTTATGTTTTGAGGAGTGTCCATTTGTCCTATGGTGGTTCATAAGCTGCATCCTGCAGTAGTTTACAT
AGCGTGTGAAGA-CACTGTTTGGAGCGTGGGAATTTCGCAGGAAAACAAACATCCATTCTCATCGGATTTGGGATTTCCT
ACGAAATTCGTACAGGA-CCTTACCTTCCAAA-------TAGGACTTTTGATTTTGTTTT-GCTTAATGCTTGCTTTCTG
TTAGCAAATTAACAGTATTTGGAATTTCAATTACTCCTTGCCTTCTTGGACTTCTATTCGCATGCATTTTCAGACATTGC
ATATATTAACAGAGAACTTC------------------------------------------------------------
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>chr7B_735
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--------------CAGGCTTGGACTAAAAAAGTGTTAAGTTGCTCTAAAAGGCCTCC--ATGCTGCCTTTGGTCACAAG
TCCCCGTCTTCCCCTCTACCCGCCTGTTTTACTTGACGCCGACACAAGGCCTGCATTCTCATGTTACTCGGGCGGGTTGG
TGTTTGAAGTAGAAGCG-------AAGACAAAACCAAGAACGCACATATGTCTACTTCAGTCCCC-CACTCACATTCTTG
CCATGCAATCCCATCAGTCCATCAATTACCATCTCTACCACTCATGGAGATCACCGCCACCGCGGCTCGCGCGGAGATCG
ACAGCTCCCGGCCGTTCCAGTCTGTCAGGGAGGCCGTCGAGGTCTTCGGCGGTGTGAGGTACGTCGCAG-----------
----GCTCCCGTGGCAGCAGCGCATCCAGCTCCAAGTTCAGCGTGCCACGGGCGGCTTCCCCGCCGTCATCCACGTTGCT
GGGCTGCCTGAAGAAGCTGGAGGCCGACCTGGCGGAGTCTAGGAGCGAGCTGGCGCAACTCAAGCAGAGGCAATCGCAGA
TGGAGATGGCCGTCTCCAGCATCGGCATGCAGTTCGCAAACAGCCTGGGGATCTTCTCCGACTCCGCGGACCTCAAGAAA
GGGAAGGAGCTCGCCGTCATCGACGTCGGCAGGACCGCGATGGTCGGCGCAGAGGAGGAATACGGTGACGGCCGGGTTCG
CAGCGATCTATGGGTCGACGAGACCAGGGCCGAGGAGTGGATGGCCAGCCTCGAGTACCTGCCGAGCCTCTCGGAGGCGC
TGACAATCAAGATGGTCGATGATGACATAAGGAAGATGAAGAGCAACAAGAAAGCCAAGAAGAAGCAGCACAAGAAGCAG
AGGAAGAATGCGTTGTCCCTCGTGGGAGGCATCTTCTCCAACAAGTGCAGGTGATCGGAGACGACGGTTTTCTGTTTTGT
TCATTGCATATGCTTATGTTTTCAAGAGTAC-----------ATGGTGGTTCATAAGCTGCATC-TGCAGTAGTTTACAT
GGCGTGTGTGTGGCACTGTTTGGAGCGTGGGAATTTCGCAGGAAAACAAACATCCATTCTCATCGGATTTGGGGTTTCCT
ACGAAATTCGTGCGAGAGCCTTGCCTTCCAAATACGTACTAGGACTTTTGATTTTGTTTT-ACTTTATGCTTGCTTTCTG
TTAGCAAATTAATAGCATTTGGAATTTCAATTGCTCCTTGCCTCCATGGACTTCTATTCGCATGCATTTTCAGACATTGC
GTATATTAACAGAGAACTTCTGCATATCTTTGATTTTTTTTTCCTTTATGGTACATCCTTTTGTATGTATGGTAAAAGTC
TACAGTGTTACCAACCATTCCTTACCAGAAACTCCGGATAATAATACTCAATGCTAAATTAACAATTCATGTTCATCAAT
GAAATTTCAATTTACGCATATCATAACCATAATGCTTACCCTGCGAGGGGTACAAAAAAAAAGGCTAAATTGATTATTCT
TAGGAAAAACACACTGAAGAGCGAGCGTTATGTGCTATTCGCAGTACGTTGCAGGCAAACATCAGTAATTCAGGATGAAA
GCAATCCACCAAAATTGGGCAGCATGTATACTAGATGGTGAAGGAGAAAAGTTGCCCCAGCTAGCTTATTGTATACTCAT
AGGTGGTCAAGGACAAGGAAAAAAAATAACTGATGAACATGGCCTGGGCTTATTGTACACACACCGAAGCAAGTACTTGT
GTTATCGTCAAACAAGAAGAGCAACCTGCACTTGATAAATGCTGTGTAAAGGTTAGACCCCCATTGATAAGGTCCATGTA
CATGGATTTGAATGTGAAGACGCGAGAGGAATGTGTTGGAATCATTTGTAAGGTTGACCATTGTCAACGTTTCAATAAGA
TTTAACCGGTATGTTTATTTCTCACCAGTTAAGACTAGCCACAGTGGGAGTAATTTCAGCAGTAACATCGAGTCCAATTC
AGTAAATTTTGCTTATGTGGCATTGAGTTAATGAGGAGAGAGGTAGTTATAGTAACTTAGCTAGTTACTGTAACATCACA
TGTCCCAATGCAATATGAGTCTATAACCTAATAAATGAAGCTTTGCATGCTACCACACTTATGTTACTATCCACTATGAA
GATAGTAACATGGTCTAGGGACAGGTGTATGTTACTAGTGTATGTTATTCACCATTGTGGCTAGTCTAATGGCCGCTAGA
GTGGAACATTCAGTGGCACCTGGCCCATCATTGAGGCAATAAATACATCTTTTCGTTGAACAATATGATTGTCACGGGAT
TGCATAGCCGGTGGCATATCCTCCAGCCGTGTTTCTTCTCATAACCTAGTGGCTAAGCCATTTTCCACCACAAACATTCT
AATGAGAAAAAAAATCAATTTTTATTCCTAGGAAGCCTTTTTAGAAAGGCGAGTCAGTTGGTTTTCGCTAAACCTAAGAG
AGGGTTTTAGAATGTAAGTACTTATCCTAAGCAATGT----CAAGCCCCGTCCTTAGTAAGTATGGTGTAGAGTCATTTT
TTCAGCATAAACTTATTTTCAATGTCAATGTCTTGCACCCCGAGGCCACATTGTTCTTTAGGATGACGTATCGCATCCCA
CCTCATCAGGCCACATTTACGCTCGTGCTTATCACAATGTCCAATAAATCTAGA--------TCTTTAGTAATTCAATAT
TTTCCTCACCCCTTTAGGAATTTGAGAAAAGAGGATAACATGAACATTAGTAAACTCGTAAAGAGAACATTGATTAGGGC
GAGCATTGCCCCCACAAGACATAAGCTTACCTATCCAACCAAGGTTTTT-CTCCGAGCGATAGAAAATACATTTTCATTC
CTTGTTAAGAAGTTTACGAAAATGCATTTGAATACCAAGGCATCTAAAAGGGAATGAGCCAATCTCACAACCAAAAATTT
GTTTATACTAATTCTCTTCCTCTCTAGCTTTTTCAAAGAAGAAGAGTTCACTCTCGTGGAAGTTCATTTTAA
>chr7A_2010
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-------------------------------------------------------------TTTCCACCACAAAGATCCT
AATGTGAAAAAAATCATTTTTTTATCCCCAGGAAGCCT-----------CGAGTCAGTTGGTTTTCCCTAAACCTAAGAG
AGAGTTTTAGAATGCAAGTACTTATCCTAAGCAATTCTTGCCAAGCCCCGTCCTTAGTAAGTATCGTGTAGAGTCATTTT
CTCAGGATAAACTTAC-TTTAATATCGATGTCTTCCACCCCAAGACCACCTTGGTCTTTAGGATGACGTATCACATCTCA
CCTCATCAGGCCATATTTACACTTGTGTTTATCAGAATGTCAAATAAATCTGGA--------TCTTTAGTAATTCAATAT
TTTCCTAGCCCCTTTAGGTATTTCAAAAAGGAGAATAACATGAACATTAGTAAACTCGTGAC------------TAGGGC
GAGCCTTG-CCCCACAAGCCATAAGCTTATCTATCCAACCAAGATTTTTTCTCCAAGCCATATAAAATACATTTTCATTT
ATGGTTAAGAAGTTTACGAAAATGCATTCGAATACCAAGGTATCTAAAAAGGAATGAGCCAATCTCATAACCAAAACGTT
GTTTATACTAA----CTTCCTCTCTAG------CAAATAAGAAGAGTTCATTCCCGTGGAAGTTCATTTTAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS---S---S-------------S---S---S-------SS-S-S-----S--------SS-----S
-----------SSSSSSSSSSS-----------S-----SSSS----------S----------------------S--S
----S--SSSS---------------------------------------------------------------------
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----------------------------------------S---------------------------------------
-----------------------------------------------------S--------------------------
-----------------------------------------------S----------------S-----S---------
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--S-----------------------------------------------------------------------------
---------------------------S---S-----S------------------------------------------
-----------------------S-----------------S--------------------------------------
---------------------S--S-------------------------------------------------------
-------------------S------S-S------S-----S--------------------------------------
-----------------------S-----------------------------------------S------------S-
----------------------------------------SSSS------------------------------------
------------------------------S-------------------------------------------------
-------------------------S----------------------------------S-------------------
-----------------------------------S-------------------------S-S----------------
--------------------SSSS--------------------------------------------------------
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------------SSS----S-------S--S-------S--S--S-----------------S----------------S
---------------------------------S-S---S-------------------------S--------------
---------S------------------------------S-------------------S----SS-------------
------------S------S------------S---------------------SSSSSSSS------------------
-----------S-------------------------------------S------S-----S-S---------------
--------------------------------S------S-S------S-------------------------------
----S------------S------------S-----------------------------------S-------------
--S------------------------S----------------------S---------------------
>forward_439
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-------------------GTGAGTAGGGTTTGGTCCGG-----------------------------------------
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>reverse_3165
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--------------------------------------------GAAGGCGAGTCAGTTGGTGT----------------
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