Multiple sequence alignment - TraesCS7D01G329300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G329300 chr7D 100.000 2387 0 0 1 2387 420781426 420783812 0.000000e+00 4409.0
1 TraesCS7D01G329300 chr7D 81.070 243 34 10 2154 2387 48846860 48847099 1.460000e-42 183.0
2 TraesCS7D01G329300 chr7B 92.919 1045 62 8 400 1438 436838088 436839126 0.000000e+00 1509.0
3 TraesCS7D01G329300 chr7B 87.677 495 41 8 1633 2126 436839779 436840254 2.070000e-155 558.0
4 TraesCS7D01G329300 chr7B 92.015 263 21 0 2120 2382 436840623 436840885 1.040000e-98 370.0
5 TraesCS7D01G329300 chr7B 92.893 197 11 2 1437 1633 436839159 436839352 1.400000e-72 283.0
6 TraesCS7D01G329300 chr7A 89.118 1066 75 21 400 1430 512170439 512169380 0.000000e+00 1288.0
7 TraesCS7D01G329300 chr7A 85.304 313 29 8 1448 1749 512169314 512169008 8.290000e-80 307.0
8 TraesCS7D01G329300 chr4D 83.273 275 35 6 2123 2387 108231740 108231467 2.370000e-60 243.0
9 TraesCS7D01G329300 chr4D 89.412 85 6 3 1997 2079 504587944 504587861 1.170000e-18 104.0
10 TraesCS7D01G329300 chr5D 81.655 278 40 10 2120 2387 260848297 260848573 1.110000e-53 220.0
11 TraesCS7D01G329300 chr5D 80.935 278 43 10 2120 2387 451633006 451633283 6.680000e-51 211.0
12 TraesCS7D01G329300 chr4B 80.303 264 44 7 2120 2381 426138617 426138874 2.420000e-45 193.0
13 TraesCS7D01G329300 chr4B 87.059 85 7 4 1997 2079 651480590 651480508 2.530000e-15 93.5
14 TraesCS7D01G329300 chr5B 79.783 277 39 11 2120 2386 122141407 122141676 4.050000e-43 185.0
15 TraesCS7D01G329300 chr2D 79.636 275 38 12 2120 2382 111500144 111500412 5.240000e-42 182.0
16 TraesCS7D01G329300 chr2B 79.184 245 44 5 2124 2361 380250084 380250328 1.900000e-36 163.0
17 TraesCS7D01G329300 chr2B 78.313 166 33 3 1909 2072 789448026 789447862 1.170000e-18 104.0
18 TraesCS7D01G329300 chr4A 77.632 152 25 7 1926 2073 517418207 517418353 1.520000e-12 84.2
19 TraesCS7D01G329300 chr1A 85.000 80 9 3 1053 1129 572338207 572338286 7.070000e-11 78.7
20 TraesCS7D01G329300 chrUn 74.860 179 40 5 1909 2084 62702245 62702421 2.540000e-10 76.8
21 TraesCS7D01G329300 chr6A 74.860 179 40 5 1909 2084 4581591 4581767 2.540000e-10 76.8
22 TraesCS7D01G329300 chr5A 81.395 86 14 2 1989 2073 22636654 22636570 4.260000e-08 69.4
23 TraesCS7D01G329300 chr1D 82.500 80 11 3 1053 1129 476561332 476561411 1.530000e-07 67.6
24 TraesCS7D01G329300 chr1D 94.286 35 1 1 2046 2079 258517281 258517315 4.000000e-03 52.8
25 TraesCS7D01G329300 chr1B 81.250 80 12 3 1053 1129 662787953 662788032 7.120000e-06 62.1
26 TraesCS7D01G329300 chr6D 100.000 28 0 0 2046 2073 312828113 312828140 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G329300 chr7D 420781426 420783812 2386 False 4409.0 4409 100.000 1 2387 1 chr7D.!!$F2 2386
1 TraesCS7D01G329300 chr7B 436838088 436840885 2797 False 680.0 1509 91.376 400 2382 4 chr7B.!!$F1 1982
2 TraesCS7D01G329300 chr7A 512169008 512170439 1431 True 797.5 1288 87.211 400 1749 2 chr7A.!!$R1 1349

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.03438 TCCTCCTCAAGTCGTCCGAT 60.034 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2321 0.179 CCTGATTGAAGCGCTAGGGT 59.821 55.0 12.05 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.931661 ATCAATCAGCACCATTTGATCC 57.068 40.909 0.00 0.00 34.57 3.36
23 24 3.699413 TCAATCAGCACCATTTGATCCA 58.301 40.909 0.00 0.00 33.09 3.41
24 25 4.087907 TCAATCAGCACCATTTGATCCAA 58.912 39.130 0.00 0.00 33.09 3.53
25 26 4.082081 TCAATCAGCACCATTTGATCCAAC 60.082 41.667 0.00 0.00 33.09 3.77
26 27 2.874014 TCAGCACCATTTGATCCAACA 58.126 42.857 0.00 0.00 0.00 3.33
27 28 3.433343 TCAGCACCATTTGATCCAACAT 58.567 40.909 0.00 0.00 0.00 2.71
28 29 3.833650 TCAGCACCATTTGATCCAACATT 59.166 39.130 0.00 0.00 0.00 2.71
29 30 4.283978 TCAGCACCATTTGATCCAACATTT 59.716 37.500 0.00 0.00 0.00 2.32
30 31 4.628333 CAGCACCATTTGATCCAACATTTC 59.372 41.667 0.00 0.00 0.00 2.17
31 32 4.529377 AGCACCATTTGATCCAACATTTCT 59.471 37.500 0.00 0.00 0.00 2.52
32 33 5.012354 AGCACCATTTGATCCAACATTTCTT 59.988 36.000 0.00 0.00 0.00 2.52
33 34 5.349543 GCACCATTTGATCCAACATTTCTTC 59.650 40.000 0.00 0.00 0.00 2.87
34 35 5.870978 CACCATTTGATCCAACATTTCTTCC 59.129 40.000 0.00 0.00 0.00 3.46
35 36 5.781818 ACCATTTGATCCAACATTTCTTCCT 59.218 36.000 0.00 0.00 0.00 3.36
36 37 6.071165 ACCATTTGATCCAACATTTCTTCCTC 60.071 38.462 0.00 0.00 0.00 3.71
37 38 5.982890 TTTGATCCAACATTTCTTCCTCC 57.017 39.130 0.00 0.00 0.00 4.30
38 39 4.934797 TGATCCAACATTTCTTCCTCCT 57.065 40.909 0.00 0.00 0.00 3.69
39 40 4.848357 TGATCCAACATTTCTTCCTCCTC 58.152 43.478 0.00 0.00 0.00 3.71
40 41 4.289410 TGATCCAACATTTCTTCCTCCTCA 59.711 41.667 0.00 0.00 0.00 3.86
41 42 4.722526 TCCAACATTTCTTCCTCCTCAA 57.277 40.909 0.00 0.00 0.00 3.02
42 43 4.655963 TCCAACATTTCTTCCTCCTCAAG 58.344 43.478 0.00 0.00 0.00 3.02
43 44 4.104738 TCCAACATTTCTTCCTCCTCAAGT 59.895 41.667 0.00 0.00 0.00 3.16
44 45 4.457257 CCAACATTTCTTCCTCCTCAAGTC 59.543 45.833 0.00 0.00 0.00 3.01
45 46 3.931578 ACATTTCTTCCTCCTCAAGTCG 58.068 45.455 0.00 0.00 0.00 4.18
46 47 3.325135 ACATTTCTTCCTCCTCAAGTCGT 59.675 43.478 0.00 0.00 0.00 4.34
47 48 3.662247 TTTCTTCCTCCTCAAGTCGTC 57.338 47.619 0.00 0.00 0.00 4.20
48 49 1.546961 TCTTCCTCCTCAAGTCGTCC 58.453 55.000 0.00 0.00 0.00 4.79
49 50 0.171455 CTTCCTCCTCAAGTCGTCCG 59.829 60.000 0.00 0.00 0.00 4.79
50 51 0.251033 TTCCTCCTCAAGTCGTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
51 52 0.034380 TCCTCCTCAAGTCGTCCGAT 60.034 55.000 0.00 0.00 0.00 4.18
52 53 0.382515 CCTCCTCAAGTCGTCCGATC 59.617 60.000 0.00 0.00 0.00 3.69
53 54 0.382515 CTCCTCAAGTCGTCCGATCC 59.617 60.000 0.00 0.00 0.00 3.36
54 55 0.034380 TCCTCAAGTCGTCCGATCCT 60.034 55.000 0.00 0.00 0.00 3.24
55 56 0.382515 CCTCAAGTCGTCCGATCCTC 59.617 60.000 0.00 0.00 0.00 3.71
56 57 0.382515 CTCAAGTCGTCCGATCCTCC 59.617 60.000 0.00 0.00 0.00 4.30
57 58 1.035932 TCAAGTCGTCCGATCCTCCC 61.036 60.000 0.00 0.00 0.00 4.30
58 59 1.757340 AAGTCGTCCGATCCTCCCC 60.757 63.158 0.00 0.00 0.00 4.81
59 60 3.225061 GTCGTCCGATCCTCCCCC 61.225 72.222 0.00 0.00 0.00 5.40
60 61 3.426836 TCGTCCGATCCTCCCCCT 61.427 66.667 0.00 0.00 0.00 4.79
61 62 2.080536 TCGTCCGATCCTCCCCCTA 61.081 63.158 0.00 0.00 0.00 3.53
62 63 1.152610 CGTCCGATCCTCCCCCTAA 60.153 63.158 0.00 0.00 0.00 2.69
63 64 0.757935 CGTCCGATCCTCCCCCTAAA 60.758 60.000 0.00 0.00 0.00 1.85
64 65 0.757512 GTCCGATCCTCCCCCTAAAC 59.242 60.000 0.00 0.00 0.00 2.01
65 66 0.399519 TCCGATCCTCCCCCTAAACC 60.400 60.000 0.00 0.00 0.00 3.27
66 67 1.416480 CCGATCCTCCCCCTAAACCC 61.416 65.000 0.00 0.00 0.00 4.11
67 68 1.416480 CGATCCTCCCCCTAAACCCC 61.416 65.000 0.00 0.00 0.00 4.95
68 69 1.385489 ATCCTCCCCCTAAACCCCG 60.385 63.158 0.00 0.00 0.00 5.73
69 70 3.805497 CCTCCCCCTAAACCCCGC 61.805 72.222 0.00 0.00 0.00 6.13
70 71 2.691252 CTCCCCCTAAACCCCGCT 60.691 66.667 0.00 0.00 0.00 5.52
71 72 2.689771 TCCCCCTAAACCCCGCTC 60.690 66.667 0.00 0.00 0.00 5.03
72 73 3.805497 CCCCCTAAACCCCGCTCC 61.805 72.222 0.00 0.00 0.00 4.70
73 74 3.012722 CCCCTAAACCCCGCTCCA 61.013 66.667 0.00 0.00 0.00 3.86
74 75 2.608550 CCCCTAAACCCCGCTCCAA 61.609 63.158 0.00 0.00 0.00 3.53
75 76 1.378119 CCCTAAACCCCGCTCCAAC 60.378 63.158 0.00 0.00 0.00 3.77
76 77 1.683441 CCTAAACCCCGCTCCAACT 59.317 57.895 0.00 0.00 0.00 3.16
77 78 0.037734 CCTAAACCCCGCTCCAACTT 59.962 55.000 0.00 0.00 0.00 2.66
78 79 1.450025 CTAAACCCCGCTCCAACTTC 58.550 55.000 0.00 0.00 0.00 3.01
79 80 0.320946 TAAACCCCGCTCCAACTTCG 60.321 55.000 0.00 0.00 0.00 3.79
80 81 3.546714 AACCCCGCTCCAACTTCGG 62.547 63.158 0.00 0.00 42.58 4.30
105 106 4.889112 CATCCATGGCCGGCAGCT 62.889 66.667 30.85 9.04 43.05 4.24
106 107 3.170672 ATCCATGGCCGGCAGCTA 61.171 61.111 30.85 11.81 43.05 3.32
107 108 2.532532 ATCCATGGCCGGCAGCTAT 61.533 57.895 30.85 13.74 44.81 2.97
108 109 2.475371 ATCCATGGCCGGCAGCTATC 62.475 60.000 30.85 10.31 41.45 2.08
109 110 3.046087 CATGGCCGGCAGCTATCG 61.046 66.667 30.85 4.71 41.45 2.92
110 111 3.550431 ATGGCCGGCAGCTATCGT 61.550 61.111 30.85 8.02 38.52 3.73
111 112 3.814615 ATGGCCGGCAGCTATCGTG 62.815 63.158 30.85 0.00 38.52 4.35
114 115 2.280389 CCGGCAGCTATCGTGCAT 60.280 61.111 0.00 0.00 43.12 3.96
115 116 2.601398 CCGGCAGCTATCGTGCATG 61.601 63.158 0.00 0.00 43.12 4.06
116 117 2.601398 CGGCAGCTATCGTGCATGG 61.601 63.158 5.98 0.00 43.12 3.66
117 118 2.635899 GCAGCTATCGTGCATGGC 59.364 61.111 5.98 1.52 40.86 4.40
119 120 1.442526 GCAGCTATCGTGCATGGCTT 61.443 55.000 5.98 0.00 46.89 4.35
120 121 0.306840 CAGCTATCGTGCATGGCTTG 59.693 55.000 5.98 0.00 46.89 4.01
121 122 1.442526 AGCTATCGTGCATGGCTTGC 61.443 55.000 17.62 17.62 46.89 4.01
139 140 4.680237 CGCCGTGCACTCCCTTGA 62.680 66.667 16.19 0.00 0.00 3.02
140 141 2.281484 GCCGTGCACTCCCTTGAA 60.281 61.111 16.19 0.00 0.00 2.69
141 142 2.617274 GCCGTGCACTCCCTTGAAC 61.617 63.158 16.19 0.00 0.00 3.18
142 143 1.966451 CCGTGCACTCCCTTGAACC 60.966 63.158 16.19 0.00 0.00 3.62
143 144 2.317609 CGTGCACTCCCTTGAACCG 61.318 63.158 16.19 0.00 0.00 4.44
144 145 2.281484 TGCACTCCCTTGAACCGC 60.281 61.111 0.00 0.00 0.00 5.68
145 146 3.056328 GCACTCCCTTGAACCGCC 61.056 66.667 0.00 0.00 0.00 6.13
146 147 2.359975 CACTCCCTTGAACCGCCC 60.360 66.667 0.00 0.00 0.00 6.13
147 148 2.529389 ACTCCCTTGAACCGCCCT 60.529 61.111 0.00 0.00 0.00 5.19
148 149 2.154074 ACTCCCTTGAACCGCCCTT 61.154 57.895 0.00 0.00 0.00 3.95
149 150 0.838987 ACTCCCTTGAACCGCCCTTA 60.839 55.000 0.00 0.00 0.00 2.69
150 151 0.392595 CTCCCTTGAACCGCCCTTAC 60.393 60.000 0.00 0.00 0.00 2.34
151 152 1.378119 CCCTTGAACCGCCCTTACC 60.378 63.158 0.00 0.00 0.00 2.85
152 153 1.743995 CCTTGAACCGCCCTTACCG 60.744 63.158 0.00 0.00 0.00 4.02
153 154 2.358984 TTGAACCGCCCTTACCGC 60.359 61.111 0.00 0.00 0.00 5.68
154 155 3.905437 TTGAACCGCCCTTACCGCC 62.905 63.158 0.00 0.00 0.00 6.13
160 161 4.151582 GCCCTTACCGCCGTGCTA 62.152 66.667 0.00 0.00 0.00 3.49
161 162 2.819550 CCCTTACCGCCGTGCTAT 59.180 61.111 0.00 0.00 0.00 2.97
162 163 1.145377 CCCTTACCGCCGTGCTATT 59.855 57.895 0.00 0.00 0.00 1.73
163 164 1.157870 CCCTTACCGCCGTGCTATTG 61.158 60.000 0.00 0.00 0.00 1.90
164 165 1.641677 CTTACCGCCGTGCTATTGC 59.358 57.895 0.00 0.00 40.20 3.56
165 166 1.772063 CTTACCGCCGTGCTATTGCC 61.772 60.000 0.00 0.00 38.71 4.52
166 167 2.246761 TTACCGCCGTGCTATTGCCT 62.247 55.000 0.00 0.00 38.71 4.75
167 168 2.246761 TACCGCCGTGCTATTGCCTT 62.247 55.000 0.00 0.00 38.71 4.35
168 169 2.406616 CCGCCGTGCTATTGCCTTT 61.407 57.895 0.00 0.00 38.71 3.11
169 170 1.062525 CGCCGTGCTATTGCCTTTC 59.937 57.895 0.00 0.00 38.71 2.62
170 171 1.062525 GCCGTGCTATTGCCTTTCG 59.937 57.895 0.00 0.00 38.71 3.46
171 172 1.644786 GCCGTGCTATTGCCTTTCGT 61.645 55.000 0.00 0.00 38.71 3.85
172 173 0.802494 CCGTGCTATTGCCTTTCGTT 59.198 50.000 0.00 0.00 38.71 3.85
173 174 1.465689 CCGTGCTATTGCCTTTCGTTG 60.466 52.381 0.00 0.00 38.71 4.10
174 175 1.465689 CGTGCTATTGCCTTTCGTTGG 60.466 52.381 0.00 0.00 38.71 3.77
181 182 3.053896 CCTTTCGTTGGCCCCGAC 61.054 66.667 13.57 2.73 33.41 4.79
182 183 3.053896 CTTTCGTTGGCCCCGACC 61.054 66.667 13.57 0.00 33.41 4.79
183 184 3.546714 CTTTCGTTGGCCCCGACCT 62.547 63.158 13.57 0.00 33.41 3.85
184 185 3.540367 TTTCGTTGGCCCCGACCTC 62.540 63.158 13.57 0.00 33.41 3.85
187 188 3.728373 GTTGGCCCCGACCTCCAT 61.728 66.667 0.00 0.00 0.00 3.41
188 189 3.727258 TTGGCCCCGACCTCCATG 61.727 66.667 0.00 0.00 0.00 3.66
191 192 4.424711 GCCCCGACCTCCATGCAA 62.425 66.667 0.00 0.00 0.00 4.08
192 193 2.438434 CCCCGACCTCCATGCAAC 60.438 66.667 0.00 0.00 0.00 4.17
193 194 2.350895 CCCGACCTCCATGCAACA 59.649 61.111 0.00 0.00 0.00 3.33
194 195 2.040544 CCCGACCTCCATGCAACAC 61.041 63.158 0.00 0.00 0.00 3.32
195 196 2.040544 CCGACCTCCATGCAACACC 61.041 63.158 0.00 0.00 0.00 4.16
196 197 2.040544 CGACCTCCATGCAACACCC 61.041 63.158 0.00 0.00 0.00 4.61
197 198 1.678970 GACCTCCATGCAACACCCC 60.679 63.158 0.00 0.00 0.00 4.95
198 199 2.362889 CCTCCATGCAACACCCCC 60.363 66.667 0.00 0.00 0.00 5.40
199 200 2.765969 CTCCATGCAACACCCCCT 59.234 61.111 0.00 0.00 0.00 4.79
200 201 1.077265 CTCCATGCAACACCCCCTT 59.923 57.895 0.00 0.00 0.00 3.95
201 202 1.228831 TCCATGCAACACCCCCTTG 60.229 57.895 0.00 0.00 0.00 3.61
202 203 2.658422 CATGCAACACCCCCTTGC 59.342 61.111 0.00 0.00 43.69 4.01
205 206 3.225235 GCAACACCCCCTTGCAAA 58.775 55.556 0.00 0.00 43.04 3.68
206 207 1.227527 GCAACACCCCCTTGCAAAC 60.228 57.895 0.00 0.00 43.04 2.93
207 208 1.445518 CAACACCCCCTTGCAAACC 59.554 57.895 0.00 0.00 0.00 3.27
208 209 1.048160 CAACACCCCCTTGCAAACCT 61.048 55.000 0.00 0.00 0.00 3.50
209 210 0.759060 AACACCCCCTTGCAAACCTC 60.759 55.000 0.00 0.00 0.00 3.85
210 211 1.908299 CACCCCCTTGCAAACCTCC 60.908 63.158 0.00 0.00 0.00 4.30
211 212 2.676471 CCCCCTTGCAAACCTCCG 60.676 66.667 0.00 0.00 0.00 4.63
212 213 2.434331 CCCCTTGCAAACCTCCGA 59.566 61.111 0.00 0.00 0.00 4.55
213 214 1.971695 CCCCTTGCAAACCTCCGAC 60.972 63.158 0.00 0.00 0.00 4.79
214 215 1.971695 CCCTTGCAAACCTCCGACC 60.972 63.158 0.00 0.00 0.00 4.79
215 216 1.971695 CCTTGCAAACCTCCGACCC 60.972 63.158 0.00 0.00 0.00 4.46
216 217 1.971695 CTTGCAAACCTCCGACCCC 60.972 63.158 0.00 0.00 0.00 4.95
217 218 3.501040 TTGCAAACCTCCGACCCCC 62.501 63.158 0.00 0.00 0.00 5.40
219 220 3.633116 CAAACCTCCGACCCCCGT 61.633 66.667 0.00 0.00 36.31 5.28
220 221 3.316760 AAACCTCCGACCCCCGTC 61.317 66.667 0.00 0.00 36.31 4.79
224 225 3.537874 CTCCGACCCCCGTCCATC 61.538 72.222 0.00 0.00 35.40 3.51
225 226 4.070265 TCCGACCCCCGTCCATCT 62.070 66.667 0.00 0.00 35.40 2.90
226 227 2.123597 CCGACCCCCGTCCATCTA 60.124 66.667 0.00 0.00 35.40 1.98
227 228 2.201022 CCGACCCCCGTCCATCTAG 61.201 68.421 0.00 0.00 35.40 2.43
228 229 1.152819 CGACCCCCGTCCATCTAGA 60.153 63.158 0.00 0.00 35.40 2.43
229 230 0.754217 CGACCCCCGTCCATCTAGAA 60.754 60.000 0.00 0.00 35.40 2.10
230 231 0.751452 GACCCCCGTCCATCTAGAAC 59.249 60.000 0.00 0.00 32.40 3.01
231 232 0.042131 ACCCCCGTCCATCTAGAACA 59.958 55.000 0.00 0.00 0.00 3.18
232 233 0.464452 CCCCCGTCCATCTAGAACAC 59.536 60.000 0.00 0.00 0.00 3.32
233 234 0.464452 CCCCGTCCATCTAGAACACC 59.536 60.000 0.00 0.00 0.00 4.16
234 235 1.191535 CCCGTCCATCTAGAACACCA 58.808 55.000 0.00 0.00 0.00 4.17
235 236 1.137086 CCCGTCCATCTAGAACACCAG 59.863 57.143 0.00 0.00 0.00 4.00
236 237 1.471676 CCGTCCATCTAGAACACCAGC 60.472 57.143 0.00 0.00 0.00 4.85
237 238 1.204704 CGTCCATCTAGAACACCAGCA 59.795 52.381 0.00 0.00 0.00 4.41
238 239 2.622436 GTCCATCTAGAACACCAGCAC 58.378 52.381 0.00 0.00 0.00 4.40
239 240 1.555075 TCCATCTAGAACACCAGCACC 59.445 52.381 0.00 0.00 0.00 5.01
240 241 1.278985 CCATCTAGAACACCAGCACCA 59.721 52.381 0.00 0.00 0.00 4.17
241 242 2.625737 CATCTAGAACACCAGCACCAG 58.374 52.381 0.00 0.00 0.00 4.00
242 243 0.976641 TCTAGAACACCAGCACCAGG 59.023 55.000 0.00 0.00 0.00 4.45
243 244 0.687354 CTAGAACACCAGCACCAGGT 59.313 55.000 0.00 0.00 40.85 4.00
244 245 1.072331 CTAGAACACCAGCACCAGGTT 59.928 52.381 0.00 0.00 37.23 3.50
245 246 1.136828 AGAACACCAGCACCAGGTTA 58.863 50.000 0.00 0.00 37.23 2.85
246 247 1.705186 AGAACACCAGCACCAGGTTAT 59.295 47.619 0.00 0.00 37.23 1.89
247 248 2.108250 AGAACACCAGCACCAGGTTATT 59.892 45.455 0.00 0.00 37.23 1.40
248 249 2.675658 ACACCAGCACCAGGTTATTT 57.324 45.000 0.00 0.00 37.23 1.40
249 250 2.238521 ACACCAGCACCAGGTTATTTG 58.761 47.619 0.00 0.00 37.23 2.32
250 251 2.238521 CACCAGCACCAGGTTATTTGT 58.761 47.619 0.00 0.00 37.23 2.83
251 252 2.030007 CACCAGCACCAGGTTATTTGTG 60.030 50.000 0.00 0.00 37.23 3.33
252 253 2.238521 CCAGCACCAGGTTATTTGTGT 58.761 47.619 0.00 0.00 0.00 3.72
253 254 2.228822 CCAGCACCAGGTTATTTGTGTC 59.771 50.000 0.00 0.00 0.00 3.67
254 255 2.228822 CAGCACCAGGTTATTTGTGTCC 59.771 50.000 0.00 0.00 0.00 4.02
255 256 1.199097 GCACCAGGTTATTTGTGTCCG 59.801 52.381 0.00 0.00 0.00 4.79
256 257 2.773487 CACCAGGTTATTTGTGTCCGA 58.227 47.619 0.00 0.00 0.00 4.55
257 258 2.742053 CACCAGGTTATTTGTGTCCGAG 59.258 50.000 0.00 0.00 0.00 4.63
258 259 2.290071 ACCAGGTTATTTGTGTCCGAGG 60.290 50.000 0.00 0.00 0.00 4.63
259 260 1.737793 CAGGTTATTTGTGTCCGAGGC 59.262 52.381 0.00 0.00 0.00 4.70
260 261 1.092348 GGTTATTTGTGTCCGAGGCC 58.908 55.000 0.00 0.00 0.00 5.19
261 262 1.339727 GGTTATTTGTGTCCGAGGCCT 60.340 52.381 3.86 3.86 0.00 5.19
262 263 2.007608 GTTATTTGTGTCCGAGGCCTC 58.992 52.381 23.79 23.79 0.00 4.70
263 264 0.539986 TATTTGTGTCCGAGGCCTCC 59.460 55.000 27.20 13.72 0.00 4.30
264 265 2.198304 ATTTGTGTCCGAGGCCTCCC 62.198 60.000 27.20 15.20 0.00 4.30
265 266 3.846405 TTGTGTCCGAGGCCTCCCT 62.846 63.158 27.20 0.00 46.74 4.20
266 267 3.775654 GTGTCCGAGGCCTCCCTG 61.776 72.222 27.20 15.51 43.12 4.45
299 300 4.760047 CCCACGACTCCGCCTTGG 62.760 72.222 0.00 0.00 39.95 3.61
300 301 4.760047 CCACGACTCCGCCTTGGG 62.760 72.222 0.00 0.00 39.95 4.12
303 304 3.470888 CGACTCCGCCTTGGGGAT 61.471 66.667 5.23 0.00 43.10 3.85
304 305 2.190578 GACTCCGCCTTGGGGATG 59.809 66.667 5.23 0.67 43.10 3.51
305 306 2.610859 ACTCCGCCTTGGGGATGT 60.611 61.111 5.23 1.25 43.10 3.06
306 307 2.124570 CTCCGCCTTGGGGATGTG 60.125 66.667 5.23 0.00 43.10 3.21
307 308 4.424711 TCCGCCTTGGGGATGTGC 62.425 66.667 5.23 0.00 39.75 4.57
308 309 4.431131 CCGCCTTGGGGATGTGCT 62.431 66.667 5.23 0.00 37.91 4.40
309 310 2.361610 CGCCTTGGGGATGTGCTT 60.362 61.111 0.00 0.00 33.58 3.91
310 311 1.978617 CGCCTTGGGGATGTGCTTT 60.979 57.895 0.00 0.00 33.58 3.51
311 312 1.893062 GCCTTGGGGATGTGCTTTC 59.107 57.895 0.00 0.00 33.58 2.62
312 313 0.613012 GCCTTGGGGATGTGCTTTCT 60.613 55.000 0.00 0.00 33.58 2.52
313 314 1.928868 CCTTGGGGATGTGCTTTCTT 58.071 50.000 0.00 0.00 33.58 2.52
314 315 2.250924 CCTTGGGGATGTGCTTTCTTT 58.749 47.619 0.00 0.00 33.58 2.52
315 316 2.634453 CCTTGGGGATGTGCTTTCTTTT 59.366 45.455 0.00 0.00 33.58 2.27
316 317 3.306294 CCTTGGGGATGTGCTTTCTTTTC 60.306 47.826 0.00 0.00 33.58 2.29
317 318 3.243359 TGGGGATGTGCTTTCTTTTCT 57.757 42.857 0.00 0.00 0.00 2.52
318 319 3.157087 TGGGGATGTGCTTTCTTTTCTC 58.843 45.455 0.00 0.00 0.00 2.87
319 320 2.493675 GGGGATGTGCTTTCTTTTCTCC 59.506 50.000 0.00 0.00 0.00 3.71
320 321 2.493675 GGGATGTGCTTTCTTTTCTCCC 59.506 50.000 0.00 0.00 34.73 4.30
321 322 2.493675 GGATGTGCTTTCTTTTCTCCCC 59.506 50.000 0.00 0.00 0.00 4.81
322 323 1.995376 TGTGCTTTCTTTTCTCCCCC 58.005 50.000 0.00 0.00 0.00 5.40
323 324 1.499007 TGTGCTTTCTTTTCTCCCCCT 59.501 47.619 0.00 0.00 0.00 4.79
324 325 2.714250 TGTGCTTTCTTTTCTCCCCCTA 59.286 45.455 0.00 0.00 0.00 3.53
325 326 3.333680 TGTGCTTTCTTTTCTCCCCCTAT 59.666 43.478 0.00 0.00 0.00 2.57
326 327 4.202673 TGTGCTTTCTTTTCTCCCCCTATT 60.203 41.667 0.00 0.00 0.00 1.73
327 328 4.399618 GTGCTTTCTTTTCTCCCCCTATTC 59.600 45.833 0.00 0.00 0.00 1.75
328 329 3.628032 GCTTTCTTTTCTCCCCCTATTCG 59.372 47.826 0.00 0.00 0.00 3.34
329 330 4.625564 GCTTTCTTTTCTCCCCCTATTCGA 60.626 45.833 0.00 0.00 0.00 3.71
330 331 4.482952 TTCTTTTCTCCCCCTATTCGAC 57.517 45.455 0.00 0.00 0.00 4.20
331 332 3.721021 TCTTTTCTCCCCCTATTCGACT 58.279 45.455 0.00 0.00 0.00 4.18
332 333 3.451178 TCTTTTCTCCCCCTATTCGACTG 59.549 47.826 0.00 0.00 0.00 3.51
333 334 2.840640 TTCTCCCCCTATTCGACTGA 57.159 50.000 0.00 0.00 0.00 3.41
334 335 3.330126 TTCTCCCCCTATTCGACTGAT 57.670 47.619 0.00 0.00 0.00 2.90
335 336 2.598565 TCTCCCCCTATTCGACTGATG 58.401 52.381 0.00 0.00 0.00 3.07
336 337 1.001406 CTCCCCCTATTCGACTGATGC 59.999 57.143 0.00 0.00 0.00 3.91
337 338 0.319900 CCCCCTATTCGACTGATGCG 60.320 60.000 0.00 0.00 0.00 4.73
338 339 0.319900 CCCCTATTCGACTGATGCGG 60.320 60.000 0.00 0.00 0.00 5.69
339 340 0.946221 CCCTATTCGACTGATGCGGC 60.946 60.000 0.00 0.00 0.00 6.53
340 341 0.249447 CCTATTCGACTGATGCGGCA 60.249 55.000 4.58 4.58 0.00 5.69
341 342 1.570813 CTATTCGACTGATGCGGCAA 58.429 50.000 6.82 0.00 0.00 4.52
342 343 1.933181 CTATTCGACTGATGCGGCAAA 59.067 47.619 6.82 0.00 0.00 3.68
343 344 1.164411 ATTCGACTGATGCGGCAAAA 58.836 45.000 6.82 0.00 0.00 2.44
344 345 0.947960 TTCGACTGATGCGGCAAAAA 59.052 45.000 6.82 0.00 0.00 1.94
361 362 3.949842 AAAAATTCCAGGAGCTTGCTC 57.050 42.857 13.69 13.69 0.00 4.26
362 363 2.592102 AAATTCCAGGAGCTTGCTCA 57.408 45.000 21.97 3.79 0.00 4.26
363 364 2.592102 AATTCCAGGAGCTTGCTCAA 57.408 45.000 21.97 9.67 0.00 3.02
364 365 2.822707 ATTCCAGGAGCTTGCTCAAT 57.177 45.000 21.97 11.33 0.00 2.57
365 366 3.939740 ATTCCAGGAGCTTGCTCAATA 57.060 42.857 21.97 4.01 0.00 1.90
366 367 2.996249 TCCAGGAGCTTGCTCAATAG 57.004 50.000 21.97 9.22 0.00 1.73
379 380 3.763097 CTCAATAGCATGGCGAAAACA 57.237 42.857 0.00 0.00 0.00 2.83
380 381 4.297299 CTCAATAGCATGGCGAAAACAT 57.703 40.909 0.00 0.00 0.00 2.71
381 382 5.422666 CTCAATAGCATGGCGAAAACATA 57.577 39.130 0.00 0.00 0.00 2.29
382 383 5.820131 CTCAATAGCATGGCGAAAACATAA 58.180 37.500 0.00 0.00 0.00 1.90
383 384 6.201226 TCAATAGCATGGCGAAAACATAAA 57.799 33.333 0.00 0.00 0.00 1.40
384 385 6.804677 TCAATAGCATGGCGAAAACATAAAT 58.195 32.000 0.00 0.00 0.00 1.40
385 386 7.935520 TCAATAGCATGGCGAAAACATAAATA 58.064 30.769 0.00 0.00 0.00 1.40
386 387 8.575589 TCAATAGCATGGCGAAAACATAAATAT 58.424 29.630 0.00 0.00 0.00 1.28
387 388 9.195411 CAATAGCATGGCGAAAACATAAATATT 57.805 29.630 0.00 0.00 0.00 1.28
388 389 8.970691 ATAGCATGGCGAAAACATAAATATTC 57.029 30.769 0.00 0.00 0.00 1.75
389 390 7.042797 AGCATGGCGAAAACATAAATATTCT 57.957 32.000 0.00 0.00 0.00 2.40
390 391 6.919662 AGCATGGCGAAAACATAAATATTCTG 59.080 34.615 0.00 0.00 0.00 3.02
391 392 6.917477 GCATGGCGAAAACATAAATATTCTGA 59.083 34.615 0.00 0.00 0.00 3.27
392 393 7.113965 GCATGGCGAAAACATAAATATTCTGAG 59.886 37.037 0.00 0.00 0.00 3.35
393 394 7.857734 TGGCGAAAACATAAATATTCTGAGA 57.142 32.000 5.29 0.00 0.00 3.27
394 395 7.693952 TGGCGAAAACATAAATATTCTGAGAC 58.306 34.615 5.29 0.00 0.00 3.36
395 396 7.132863 GGCGAAAACATAAATATTCTGAGACC 58.867 38.462 5.29 0.00 0.00 3.85
396 397 7.012421 GGCGAAAACATAAATATTCTGAGACCT 59.988 37.037 5.29 0.00 0.00 3.85
397 398 7.852945 GCGAAAACATAAATATTCTGAGACCTG 59.147 37.037 5.29 0.00 0.00 4.00
398 399 8.338259 CGAAAACATAAATATTCTGAGACCTGG 58.662 37.037 0.00 0.00 0.00 4.45
413 414 3.703052 AGACCTGGTATTAGTTACACCCG 59.297 47.826 0.00 0.00 31.99 5.28
421 422 5.234972 GGTATTAGTTACACCCGAATTTCCG 59.765 44.000 0.00 0.00 31.99 4.30
565 568 4.974368 TTATGCCCCGTAATTTTCACAG 57.026 40.909 0.00 0.00 0.00 3.66
612 616 3.068873 CGGTAAAGAAGATCTCCAGGAGG 59.931 52.174 17.10 0.00 0.00 4.30
687 691 1.791103 GATCTCTGACCGCTCCTCCG 61.791 65.000 0.00 0.00 0.00 4.63
708 712 1.134670 GGCTGGCTCGTATCTTTGACT 60.135 52.381 0.00 0.00 0.00 3.41
714 718 2.094182 GCTCGTATCTTTGACTGGACCA 60.094 50.000 0.00 0.00 0.00 4.02
722 726 4.836825 TCTTTGACTGGACCAATCATCTC 58.163 43.478 6.44 0.00 0.00 2.75
737 755 0.105913 ATCTCCCTCCTCTTCCGTCC 60.106 60.000 0.00 0.00 0.00 4.79
821 839 2.205074 CGTGGCTATAGAGTTTGGCTG 58.795 52.381 3.21 0.00 0.00 4.85
988 1016 0.612174 CGAGAGGAGTGACAAGGGGA 60.612 60.000 0.00 0.00 0.00 4.81
1333 1367 3.506096 CCGACCTGCTCTACGCGA 61.506 66.667 15.93 0.00 43.27 5.87
1390 1424 4.222145 TCAACGGCTTTCCTTACTGATACT 59.778 41.667 0.00 0.00 0.00 2.12
1421 1460 4.527038 TGAAGAATCGTGTTACCCTTCTCT 59.473 41.667 0.00 0.00 33.28 3.10
1487 1576 1.493950 GCGCCAGATGTGATCTTCCG 61.494 60.000 0.00 0.00 37.58 4.30
1553 1642 7.120579 TGAATATATTGTGTTCAGCGAAAAGGT 59.879 33.333 1.78 0.00 33.62 3.50
1569 1658 5.582665 CGAAAAGGTAGAAGAAAGAGATGGG 59.417 44.000 0.00 0.00 0.00 4.00
1570 1659 4.495690 AAGGTAGAAGAAAGAGATGGGC 57.504 45.455 0.00 0.00 0.00 5.36
1591 1681 1.060937 GTATGCTGGCAAACGAGCG 59.939 57.895 0.00 0.00 38.09 5.03
1593 1683 0.672091 TATGCTGGCAAACGAGCGAA 60.672 50.000 0.00 0.00 38.09 4.70
1671 2190 8.784994 GGTCATCTGTAGTAGAATTAGAATCGA 58.215 37.037 0.00 0.00 39.30 3.59
1680 2199 7.081349 AGTAGAATTAGAATCGAATCGCTCAG 58.919 38.462 0.00 0.00 0.00 3.35
1774 2294 7.118680 GTGTTATAATCTTCAGTGAAACCCGAA 59.881 37.037 7.06 0.00 37.80 4.30
1776 2296 8.674607 GTTATAATCTTCAGTGAAACCCGAATT 58.325 33.333 7.06 3.53 37.80 2.17
1787 2307 0.546747 ACCCGAATTCCCTGACCTGA 60.547 55.000 0.00 0.00 0.00 3.86
1801 2321 2.429250 TGACCTGAACTGAACGACTGAA 59.571 45.455 0.00 0.00 0.00 3.02
1802 2322 2.795470 GACCTGAACTGAACGACTGAAC 59.205 50.000 0.00 0.00 0.00 3.18
1819 2339 1.936547 GAACCCTAGCGCTTCAATCAG 59.063 52.381 18.68 5.21 0.00 2.90
1890 2410 1.209504 CCGGCCATTCAGGAGTAGAAA 59.790 52.381 2.24 0.00 41.22 2.52
1899 2419 2.301870 TCAGGAGTAGAAATTGTGCCGT 59.698 45.455 0.00 0.00 0.00 5.68
1900 2420 3.074412 CAGGAGTAGAAATTGTGCCGTT 58.926 45.455 0.00 0.00 0.00 4.44
1901 2421 3.074412 AGGAGTAGAAATTGTGCCGTTG 58.926 45.455 0.00 0.00 0.00 4.10
1902 2422 2.812011 GGAGTAGAAATTGTGCCGTTGT 59.188 45.455 0.00 0.00 0.00 3.32
1903 2423 3.998341 GGAGTAGAAATTGTGCCGTTGTA 59.002 43.478 0.00 0.00 0.00 2.41
1905 2425 4.638304 AGTAGAAATTGTGCCGTTGTACT 58.362 39.130 0.00 0.00 0.00 2.73
1906 2426 4.689345 AGTAGAAATTGTGCCGTTGTACTC 59.311 41.667 0.00 0.00 28.26 2.59
1907 2427 2.478894 AGAAATTGTGCCGTTGTACTCG 59.521 45.455 0.00 0.00 0.00 4.18
1909 2429 0.672401 ATTGTGCCGTTGTACTCGGG 60.672 55.000 23.51 10.91 46.90 5.14
1910 2430 2.433664 GTGCCGTTGTACTCGGGG 60.434 66.667 23.51 9.43 46.90 5.73
1911 2431 4.382320 TGCCGTTGTACTCGGGGC 62.382 66.667 23.51 17.09 46.90 5.80
1912 2432 4.382320 GCCGTTGTACTCGGGGCA 62.382 66.667 23.51 0.00 46.90 5.36
1913 2433 2.582436 CCGTTGTACTCGGGGCAT 59.418 61.111 17.76 0.00 43.68 4.40
1914 2434 1.520787 CCGTTGTACTCGGGGCATC 60.521 63.158 17.76 0.00 43.68 3.91
1915 2435 1.515954 CGTTGTACTCGGGGCATCT 59.484 57.895 0.00 0.00 0.00 2.90
1916 2436 0.527817 CGTTGTACTCGGGGCATCTC 60.528 60.000 0.00 0.00 0.00 2.75
1917 2437 0.179081 GTTGTACTCGGGGCATCTCC 60.179 60.000 0.00 0.00 0.00 3.71
1928 2448 2.278206 CATCTCCGACGCTGACCG 60.278 66.667 0.00 0.00 44.21 4.79
1942 2462 2.432444 CTGACCGGTAATTTTGCTCCA 58.568 47.619 7.34 0.00 0.00 3.86
1951 2471 6.475402 CCGGTAATTTTGCTCCAATATTTGTC 59.525 38.462 0.00 0.00 30.36 3.18
1958 2478 2.354821 GCTCCAATATTTGTCCACGGAC 59.645 50.000 9.38 9.38 44.77 4.79
1969 2489 2.500229 GTCCACGGACAAAGGAATCAA 58.500 47.619 11.43 0.00 44.02 2.57
1975 2495 2.749076 CGGACAAAGGAATCAATCTGCA 59.251 45.455 0.00 0.00 0.00 4.41
1986 2506 2.981898 TCAATCTGCAGACACTGATGG 58.018 47.619 20.97 0.00 32.44 3.51
1987 2507 2.303890 TCAATCTGCAGACACTGATGGT 59.696 45.455 20.97 0.00 32.44 3.55
1999 2519 1.976132 CTGATGGTGGAGACGGCCAT 61.976 60.000 2.24 0.00 46.84 4.40
2004 2524 1.224592 GTGGAGACGGCCATCCAAT 59.775 57.895 19.93 0.00 46.87 3.16
2005 2525 0.468226 GTGGAGACGGCCATCCAATA 59.532 55.000 19.93 0.00 46.87 1.90
2009 2529 0.179045 AGACGGCCATCCAATACTGC 60.179 55.000 2.24 0.00 0.00 4.40
2065 2585 4.792528 AACAAAATTCATGCAAACACGG 57.207 36.364 0.00 0.00 0.00 4.94
2085 2605 5.681105 CACGGCGGATTTTCAATACATTTAG 59.319 40.000 13.24 0.00 0.00 1.85
2086 2606 5.212194 CGGCGGATTTTCAATACATTTAGG 58.788 41.667 0.00 0.00 0.00 2.69
2087 2607 5.528870 GGCGGATTTTCAATACATTTAGGG 58.471 41.667 0.00 0.00 0.00 3.53
2088 2608 5.508994 GGCGGATTTTCAATACATTTAGGGG 60.509 44.000 0.00 0.00 0.00 4.79
2093 2613 9.952030 GGATTTTCAATACATTTAGGGGAAAAA 57.048 29.630 0.00 0.00 36.65 1.94
2188 3083 3.110178 GCGACGAGTTGGGGTTCG 61.110 66.667 0.00 0.00 42.26 3.95
2240 3135 0.815615 GCTGTCTATTTGGCCCTCCG 60.816 60.000 0.00 0.00 34.14 4.63
2268 3163 1.075425 CGCTGCTCGAGGAGAAACAG 61.075 60.000 34.83 21.68 41.67 3.16
2277 3172 2.685100 GAGGAGAAACAGGTTGTACCG 58.315 52.381 0.00 0.00 44.90 4.02
2283 3178 3.624410 AGAAACAGGTTGTACCGTTGTTC 59.376 43.478 4.56 1.99 44.90 3.18
2288 3183 1.071228 GGTTGTACCGTTGTTCCTCCT 59.929 52.381 0.00 0.00 0.00 3.69
2302 3197 2.669569 TCCTGCGCCTGCTGAAAC 60.670 61.111 4.18 0.00 42.14 2.78
2303 3198 2.979676 CCTGCGCCTGCTGAAACA 60.980 61.111 4.18 0.00 42.14 2.83
2338 3233 3.768922 GCAGAGTGCTCCTCCGCT 61.769 66.667 5.30 0.00 39.96 5.52
2341 3236 0.031857 CAGAGTGCTCCTCCGCTATG 59.968 60.000 0.00 0.00 41.47 2.23
2356 3251 2.486951 CTATGGCAGCATTGAAGTGC 57.513 50.000 0.00 0.00 45.38 4.40
2382 3277 1.302285 CCTGCTCCATGGTGAAGCT 59.698 57.895 21.00 0.00 0.00 3.74
2383 3278 1.030488 CCTGCTCCATGGTGAAGCTG 61.030 60.000 21.00 19.69 0.00 4.24
2384 3279 1.001764 TGCTCCATGGTGAAGCTGG 60.002 57.895 21.00 0.00 0.00 4.85
2385 3280 2.413142 GCTCCATGGTGAAGCTGGC 61.413 63.158 17.98 4.40 0.00 4.85
2386 3281 1.001764 CTCCATGGTGAAGCTGGCA 60.002 57.895 12.58 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.712829 TGGATCAAATGGTGCTGATTGATT 59.287 37.500 0.00 0.00 41.29 2.57
1 2 4.283337 TGGATCAAATGGTGCTGATTGAT 58.717 39.130 0.00 0.00 43.25 2.57
2 3 3.699413 TGGATCAAATGGTGCTGATTGA 58.301 40.909 0.00 0.00 36.35 2.57
3 4 4.178540 GTTGGATCAAATGGTGCTGATTG 58.821 43.478 0.00 0.00 32.40 2.67
4 5 3.833650 TGTTGGATCAAATGGTGCTGATT 59.166 39.130 0.00 0.00 32.40 2.57
5 6 3.433343 TGTTGGATCAAATGGTGCTGAT 58.567 40.909 0.00 0.00 34.96 2.90
6 7 2.874014 TGTTGGATCAAATGGTGCTGA 58.126 42.857 0.00 0.00 0.00 4.26
7 8 3.880047 ATGTTGGATCAAATGGTGCTG 57.120 42.857 0.00 0.00 0.00 4.41
8 9 4.529377 AGAAATGTTGGATCAAATGGTGCT 59.471 37.500 0.00 0.00 0.00 4.40
9 10 4.824289 AGAAATGTTGGATCAAATGGTGC 58.176 39.130 0.00 0.00 0.00 5.01
10 11 5.870978 GGAAGAAATGTTGGATCAAATGGTG 59.129 40.000 0.00 0.00 0.00 4.17
11 12 5.781818 AGGAAGAAATGTTGGATCAAATGGT 59.218 36.000 0.00 0.00 0.00 3.55
12 13 6.290294 AGGAAGAAATGTTGGATCAAATGG 57.710 37.500 0.00 0.00 0.00 3.16
13 14 6.154021 AGGAGGAAGAAATGTTGGATCAAATG 59.846 38.462 0.00 0.00 0.00 2.32
14 15 6.259123 AGGAGGAAGAAATGTTGGATCAAAT 58.741 36.000 0.00 0.00 0.00 2.32
15 16 5.644188 AGGAGGAAGAAATGTTGGATCAAA 58.356 37.500 0.00 0.00 0.00 2.69
16 17 5.222109 TGAGGAGGAAGAAATGTTGGATCAA 60.222 40.000 0.00 0.00 0.00 2.57
17 18 4.289410 TGAGGAGGAAGAAATGTTGGATCA 59.711 41.667 0.00 0.00 0.00 2.92
18 19 4.848357 TGAGGAGGAAGAAATGTTGGATC 58.152 43.478 0.00 0.00 0.00 3.36
19 20 4.934797 TGAGGAGGAAGAAATGTTGGAT 57.065 40.909 0.00 0.00 0.00 3.41
20 21 4.104738 ACTTGAGGAGGAAGAAATGTTGGA 59.895 41.667 0.00 0.00 0.00 3.53
21 22 4.401925 ACTTGAGGAGGAAGAAATGTTGG 58.598 43.478 0.00 0.00 0.00 3.77
22 23 4.153117 CGACTTGAGGAGGAAGAAATGTTG 59.847 45.833 0.00 0.00 0.00 3.33
23 24 4.202367 ACGACTTGAGGAGGAAGAAATGTT 60.202 41.667 0.00 0.00 0.00 2.71
24 25 3.325135 ACGACTTGAGGAGGAAGAAATGT 59.675 43.478 0.00 0.00 0.00 2.71
25 26 3.929610 GACGACTTGAGGAGGAAGAAATG 59.070 47.826 0.00 0.00 0.00 2.32
26 27 3.055747 GGACGACTTGAGGAGGAAGAAAT 60.056 47.826 0.00 0.00 0.00 2.17
27 28 2.299297 GGACGACTTGAGGAGGAAGAAA 59.701 50.000 0.00 0.00 0.00 2.52
28 29 1.893801 GGACGACTTGAGGAGGAAGAA 59.106 52.381 0.00 0.00 0.00 2.52
29 30 1.546961 GGACGACTTGAGGAGGAAGA 58.453 55.000 0.00 0.00 0.00 2.87
30 31 0.171455 CGGACGACTTGAGGAGGAAG 59.829 60.000 0.00 0.00 0.00 3.46
31 32 0.251033 TCGGACGACTTGAGGAGGAA 60.251 55.000 0.00 0.00 0.00 3.36
32 33 0.034380 ATCGGACGACTTGAGGAGGA 60.034 55.000 0.00 0.00 0.00 3.71
33 34 0.382515 GATCGGACGACTTGAGGAGG 59.617 60.000 0.00 0.00 0.00 4.30
34 35 0.382515 GGATCGGACGACTTGAGGAG 59.617 60.000 0.00 0.00 0.00 3.69
35 36 0.034380 AGGATCGGACGACTTGAGGA 60.034 55.000 0.00 0.00 0.00 3.71
36 37 0.382515 GAGGATCGGACGACTTGAGG 59.617 60.000 0.00 0.00 0.00 3.86
37 38 0.382515 GGAGGATCGGACGACTTGAG 59.617 60.000 0.00 0.00 34.37 3.02
38 39 1.035932 GGGAGGATCGGACGACTTGA 61.036 60.000 0.00 0.00 34.37 3.02
39 40 1.437986 GGGAGGATCGGACGACTTG 59.562 63.158 0.00 0.00 34.37 3.16
40 41 1.757340 GGGGAGGATCGGACGACTT 60.757 63.158 0.00 0.00 34.37 3.01
41 42 2.123812 GGGGAGGATCGGACGACT 60.124 66.667 0.00 0.00 34.37 4.18
42 43 2.349100 TAGGGGGAGGATCGGACGAC 62.349 65.000 0.00 0.00 34.37 4.34
43 44 1.648302 TTAGGGGGAGGATCGGACGA 61.648 60.000 0.00 0.00 34.37 4.20
44 45 0.757935 TTTAGGGGGAGGATCGGACG 60.758 60.000 0.00 0.00 34.37 4.79
45 46 0.757512 GTTTAGGGGGAGGATCGGAC 59.242 60.000 0.00 0.00 34.37 4.79
46 47 0.399519 GGTTTAGGGGGAGGATCGGA 60.400 60.000 0.00 0.00 34.37 4.55
47 48 1.416480 GGGTTTAGGGGGAGGATCGG 61.416 65.000 0.00 0.00 34.37 4.18
48 49 1.416480 GGGGTTTAGGGGGAGGATCG 61.416 65.000 0.00 0.00 34.37 3.69
49 50 1.416480 CGGGGTTTAGGGGGAGGATC 61.416 65.000 0.00 0.00 0.00 3.36
50 51 1.385489 CGGGGTTTAGGGGGAGGAT 60.385 63.158 0.00 0.00 0.00 3.24
51 52 2.041596 CGGGGTTTAGGGGGAGGA 59.958 66.667 0.00 0.00 0.00 3.71
52 53 3.805497 GCGGGGTTTAGGGGGAGG 61.805 72.222 0.00 0.00 0.00 4.30
53 54 2.691252 AGCGGGGTTTAGGGGGAG 60.691 66.667 0.00 0.00 0.00 4.30
54 55 2.689771 GAGCGGGGTTTAGGGGGA 60.690 66.667 0.00 0.00 0.00 4.81
55 56 3.805497 GGAGCGGGGTTTAGGGGG 61.805 72.222 0.00 0.00 0.00 5.40
56 57 2.608550 TTGGAGCGGGGTTTAGGGG 61.609 63.158 0.00 0.00 0.00 4.79
57 58 1.378119 GTTGGAGCGGGGTTTAGGG 60.378 63.158 0.00 0.00 0.00 3.53
58 59 0.037734 AAGTTGGAGCGGGGTTTAGG 59.962 55.000 0.00 0.00 0.00 2.69
59 60 1.450025 GAAGTTGGAGCGGGGTTTAG 58.550 55.000 0.00 0.00 0.00 1.85
60 61 0.320946 CGAAGTTGGAGCGGGGTTTA 60.321 55.000 0.00 0.00 0.00 2.01
61 62 1.599797 CGAAGTTGGAGCGGGGTTT 60.600 57.895 0.00 0.00 0.00 3.27
62 63 2.032071 CGAAGTTGGAGCGGGGTT 59.968 61.111 0.00 0.00 0.00 4.11
63 64 4.016706 CCGAAGTTGGAGCGGGGT 62.017 66.667 0.00 0.00 41.29 4.95
88 89 2.759641 ATAGCTGCCGGCCATGGATG 62.760 60.000 26.77 6.27 43.05 3.51
89 90 2.475371 GATAGCTGCCGGCCATGGAT 62.475 60.000 26.77 12.73 43.05 3.41
90 91 3.170672 ATAGCTGCCGGCCATGGA 61.171 61.111 26.77 2.93 43.05 3.41
91 92 2.670934 GATAGCTGCCGGCCATGG 60.671 66.667 26.77 7.63 43.05 3.66
92 93 3.046087 CGATAGCTGCCGGCCATG 61.046 66.667 26.77 15.43 43.05 3.66
93 94 3.550431 ACGATAGCTGCCGGCCAT 61.550 61.111 26.77 12.48 43.05 4.40
94 95 4.529219 CACGATAGCTGCCGGCCA 62.529 66.667 26.77 11.42 43.05 5.36
97 98 2.280389 ATGCACGATAGCTGCCGG 60.280 61.111 12.93 0.00 40.70 6.13
98 99 2.601398 CCATGCACGATAGCTGCCG 61.601 63.158 0.00 1.68 40.70 5.69
99 100 2.901292 GCCATGCACGATAGCTGCC 61.901 63.158 0.00 0.00 40.70 4.85
100 101 1.442526 AAGCCATGCACGATAGCTGC 61.443 55.000 0.00 0.00 41.41 5.25
101 102 0.306840 CAAGCCATGCACGATAGCTG 59.693 55.000 0.00 0.00 42.67 4.24
102 103 2.699073 CAAGCCATGCACGATAGCT 58.301 52.632 0.00 0.00 42.67 3.32
122 123 4.680237 TCAAGGGAGTGCACGGCG 62.680 66.667 12.01 4.80 0.00 6.46
123 124 2.281484 TTCAAGGGAGTGCACGGC 60.281 61.111 12.01 7.73 0.00 5.68
124 125 1.966451 GGTTCAAGGGAGTGCACGG 60.966 63.158 12.01 0.00 0.00 4.94
125 126 2.317609 CGGTTCAAGGGAGTGCACG 61.318 63.158 12.01 0.00 0.00 5.34
126 127 2.617274 GCGGTTCAAGGGAGTGCAC 61.617 63.158 9.40 9.40 0.00 4.57
127 128 2.281484 GCGGTTCAAGGGAGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
128 129 3.056328 GGCGGTTCAAGGGAGTGC 61.056 66.667 0.00 0.00 0.00 4.40
129 130 2.359975 GGGCGGTTCAAGGGAGTG 60.360 66.667 0.00 0.00 0.00 3.51
130 131 0.838987 TAAGGGCGGTTCAAGGGAGT 60.839 55.000 0.00 0.00 0.00 3.85
131 132 0.392595 GTAAGGGCGGTTCAAGGGAG 60.393 60.000 0.00 0.00 0.00 4.30
132 133 1.681076 GTAAGGGCGGTTCAAGGGA 59.319 57.895 0.00 0.00 0.00 4.20
133 134 1.378119 GGTAAGGGCGGTTCAAGGG 60.378 63.158 0.00 0.00 0.00 3.95
134 135 1.743995 CGGTAAGGGCGGTTCAAGG 60.744 63.158 0.00 0.00 0.00 3.61
135 136 2.396157 GCGGTAAGGGCGGTTCAAG 61.396 63.158 0.00 0.00 0.00 3.02
136 137 2.358984 GCGGTAAGGGCGGTTCAA 60.359 61.111 0.00 0.00 0.00 2.69
137 138 4.397832 GGCGGTAAGGGCGGTTCA 62.398 66.667 0.00 0.00 0.00 3.18
143 144 2.935627 AATAGCACGGCGGTAAGGGC 62.936 60.000 13.24 4.82 36.96 5.19
144 145 1.145377 AATAGCACGGCGGTAAGGG 59.855 57.895 13.24 0.00 0.00 3.95
145 146 1.772063 GCAATAGCACGGCGGTAAGG 61.772 60.000 13.24 0.00 41.58 2.69
146 147 1.641677 GCAATAGCACGGCGGTAAG 59.358 57.895 13.24 0.00 41.58 2.34
147 148 1.816259 GGCAATAGCACGGCGGTAA 60.816 57.895 13.24 0.00 44.61 2.85
148 149 2.202960 GGCAATAGCACGGCGGTA 60.203 61.111 13.24 0.00 44.61 4.02
149 150 3.622060 AAGGCAATAGCACGGCGGT 62.622 57.895 13.24 0.00 44.61 5.68
150 151 2.322999 GAAAGGCAATAGCACGGCGG 62.323 60.000 13.24 0.66 44.61 6.13
151 152 1.062525 GAAAGGCAATAGCACGGCG 59.937 57.895 4.80 4.80 44.61 6.46
152 153 1.062525 CGAAAGGCAATAGCACGGC 59.937 57.895 0.00 0.00 44.61 5.68
153 154 0.802494 AACGAAAGGCAATAGCACGG 59.198 50.000 0.00 0.00 44.61 4.94
154 155 1.465689 CCAACGAAAGGCAATAGCACG 60.466 52.381 0.00 0.00 44.61 5.34
155 156 2.262572 CCAACGAAAGGCAATAGCAC 57.737 50.000 0.00 0.00 44.61 4.40
164 165 3.053896 GTCGGGGCCAACGAAAGG 61.054 66.667 21.22 0.00 42.55 3.11
165 166 3.053896 GGTCGGGGCCAACGAAAG 61.054 66.667 21.22 0.00 42.55 2.62
166 167 3.540367 GAGGTCGGGGCCAACGAAA 62.540 63.158 21.22 0.14 42.55 3.46
167 168 4.011517 GAGGTCGGGGCCAACGAA 62.012 66.667 21.22 5.45 42.55 3.85
170 171 3.728373 ATGGAGGTCGGGGCCAAC 61.728 66.667 4.39 2.23 34.95 3.77
171 172 3.727258 CATGGAGGTCGGGGCCAA 61.727 66.667 4.39 0.00 34.95 4.52
174 175 4.424711 TTGCATGGAGGTCGGGGC 62.425 66.667 0.00 0.00 0.00 5.80
175 176 2.438434 GTTGCATGGAGGTCGGGG 60.438 66.667 0.00 0.00 0.00 5.73
176 177 2.040544 GTGTTGCATGGAGGTCGGG 61.041 63.158 0.00 0.00 0.00 5.14
177 178 2.040544 GGTGTTGCATGGAGGTCGG 61.041 63.158 0.00 0.00 0.00 4.79
178 179 2.040544 GGGTGTTGCATGGAGGTCG 61.041 63.158 0.00 0.00 0.00 4.79
179 180 1.678970 GGGGTGTTGCATGGAGGTC 60.679 63.158 0.00 0.00 0.00 3.85
180 181 2.440599 GGGGTGTTGCATGGAGGT 59.559 61.111 0.00 0.00 0.00 3.85
181 182 2.362889 GGGGGTGTTGCATGGAGG 60.363 66.667 0.00 0.00 0.00 4.30
182 183 1.077265 AAGGGGGTGTTGCATGGAG 59.923 57.895 0.00 0.00 0.00 3.86
183 184 1.228831 CAAGGGGGTGTTGCATGGA 60.229 57.895 0.00 0.00 0.00 3.41
184 185 3.379880 CAAGGGGGTGTTGCATGG 58.620 61.111 0.00 0.00 0.00 3.66
189 190 1.048160 AGGTTTGCAAGGGGGTGTTG 61.048 55.000 0.00 0.00 0.00 3.33
190 191 0.759060 GAGGTTTGCAAGGGGGTGTT 60.759 55.000 0.00 0.00 0.00 3.32
191 192 1.152546 GAGGTTTGCAAGGGGGTGT 60.153 57.895 0.00 0.00 0.00 4.16
192 193 1.908299 GGAGGTTTGCAAGGGGGTG 60.908 63.158 0.00 0.00 0.00 4.61
193 194 2.526110 GGAGGTTTGCAAGGGGGT 59.474 61.111 0.00 0.00 0.00 4.95
194 195 2.676471 CGGAGGTTTGCAAGGGGG 60.676 66.667 0.00 0.00 0.00 5.40
195 196 1.971695 GTCGGAGGTTTGCAAGGGG 60.972 63.158 0.00 0.00 0.00 4.79
196 197 1.971695 GGTCGGAGGTTTGCAAGGG 60.972 63.158 0.00 0.00 0.00 3.95
197 198 1.971695 GGGTCGGAGGTTTGCAAGG 60.972 63.158 0.00 0.00 0.00 3.61
198 199 1.971695 GGGGTCGGAGGTTTGCAAG 60.972 63.158 0.00 0.00 0.00 4.01
199 200 2.114411 GGGGTCGGAGGTTTGCAA 59.886 61.111 0.00 0.00 0.00 4.08
200 201 3.961414 GGGGGTCGGAGGTTTGCA 61.961 66.667 0.00 0.00 0.00 4.08
202 203 3.600898 GACGGGGGTCGGAGGTTTG 62.601 68.421 0.00 0.00 44.45 2.93
203 204 3.316760 GACGGGGGTCGGAGGTTT 61.317 66.667 0.00 0.00 44.45 3.27
207 208 2.635787 TAGATGGACGGGGGTCGGAG 62.636 65.000 0.00 0.00 44.45 4.63
208 209 2.635787 CTAGATGGACGGGGGTCGGA 62.636 65.000 0.00 0.00 44.45 4.55
209 210 2.123597 TAGATGGACGGGGGTCGG 60.124 66.667 0.00 0.00 44.45 4.79
210 211 0.754217 TTCTAGATGGACGGGGGTCG 60.754 60.000 0.00 0.00 45.88 4.79
211 212 0.751452 GTTCTAGATGGACGGGGGTC 59.249 60.000 0.00 0.00 0.00 4.46
212 213 0.042131 TGTTCTAGATGGACGGGGGT 59.958 55.000 0.00 0.00 0.00 4.95
213 214 0.464452 GTGTTCTAGATGGACGGGGG 59.536 60.000 0.00 0.00 0.00 5.40
214 215 0.464452 GGTGTTCTAGATGGACGGGG 59.536 60.000 0.00 0.00 0.00 5.73
215 216 1.137086 CTGGTGTTCTAGATGGACGGG 59.863 57.143 0.00 0.00 0.00 5.28
216 217 1.471676 GCTGGTGTTCTAGATGGACGG 60.472 57.143 0.00 0.00 0.00 4.79
217 218 1.204704 TGCTGGTGTTCTAGATGGACG 59.795 52.381 0.00 0.00 0.00 4.79
218 219 2.622436 GTGCTGGTGTTCTAGATGGAC 58.378 52.381 0.00 0.00 0.00 4.02
219 220 1.555075 GGTGCTGGTGTTCTAGATGGA 59.445 52.381 0.00 0.00 0.00 3.41
220 221 1.278985 TGGTGCTGGTGTTCTAGATGG 59.721 52.381 0.00 0.00 0.00 3.51
221 222 2.625737 CTGGTGCTGGTGTTCTAGATG 58.374 52.381 0.00 0.00 0.00 2.90
222 223 1.556911 CCTGGTGCTGGTGTTCTAGAT 59.443 52.381 0.00 0.00 0.00 1.98
223 224 0.976641 CCTGGTGCTGGTGTTCTAGA 59.023 55.000 0.00 0.00 0.00 2.43
224 225 0.687354 ACCTGGTGCTGGTGTTCTAG 59.313 55.000 0.00 0.00 34.44 2.43
225 226 1.136828 AACCTGGTGCTGGTGTTCTA 58.863 50.000 0.00 0.00 35.88 2.10
226 227 1.136828 TAACCTGGTGCTGGTGTTCT 58.863 50.000 0.00 0.00 35.88 3.01
227 228 2.200373 ATAACCTGGTGCTGGTGTTC 57.800 50.000 0.00 0.00 35.88 3.18
228 229 2.627699 CAAATAACCTGGTGCTGGTGTT 59.372 45.455 0.00 0.00 35.88 3.32
229 230 2.238521 CAAATAACCTGGTGCTGGTGT 58.761 47.619 0.00 0.00 35.88 4.16
230 231 2.030007 CACAAATAACCTGGTGCTGGTG 60.030 50.000 0.00 2.37 35.88 4.17
231 232 2.238521 CACAAATAACCTGGTGCTGGT 58.761 47.619 0.00 0.00 37.28 4.00
232 233 2.228822 GACACAAATAACCTGGTGCTGG 59.771 50.000 0.00 0.00 34.69 4.85
233 234 2.228822 GGACACAAATAACCTGGTGCTG 59.771 50.000 0.00 0.00 34.69 4.41
234 235 2.514803 GGACACAAATAACCTGGTGCT 58.485 47.619 0.00 0.00 34.69 4.40
235 236 1.199097 CGGACACAAATAACCTGGTGC 59.801 52.381 0.00 0.00 34.69 5.01
236 237 2.742053 CTCGGACACAAATAACCTGGTG 59.258 50.000 0.00 0.00 37.29 4.17
237 238 2.290071 CCTCGGACACAAATAACCTGGT 60.290 50.000 0.00 0.00 0.00 4.00
238 239 2.356135 CCTCGGACACAAATAACCTGG 58.644 52.381 0.00 0.00 0.00 4.45
239 240 1.737793 GCCTCGGACACAAATAACCTG 59.262 52.381 0.00 0.00 0.00 4.00
240 241 1.339727 GGCCTCGGACACAAATAACCT 60.340 52.381 0.00 0.00 0.00 3.50
241 242 1.092348 GGCCTCGGACACAAATAACC 58.908 55.000 0.00 0.00 0.00 2.85
242 243 2.007608 GAGGCCTCGGACACAAATAAC 58.992 52.381 19.06 0.00 0.00 1.89
243 244 1.065709 GGAGGCCTCGGACACAAATAA 60.066 52.381 26.36 0.00 0.00 1.40
244 245 0.539986 GGAGGCCTCGGACACAAATA 59.460 55.000 26.36 0.00 0.00 1.40
245 246 1.299976 GGAGGCCTCGGACACAAAT 59.700 57.895 26.36 0.00 0.00 2.32
246 247 2.747686 GGAGGCCTCGGACACAAA 59.252 61.111 26.36 0.00 0.00 2.83
247 248 3.319198 GGGAGGCCTCGGACACAA 61.319 66.667 26.36 0.00 0.00 3.33
248 249 4.316823 AGGGAGGCCTCGGACACA 62.317 66.667 26.36 0.00 0.00 3.72
249 250 3.775654 CAGGGAGGCCTCGGACAC 61.776 72.222 26.36 11.94 0.00 3.67
284 285 4.760047 CCCCAAGGCGGAGTCGTG 62.760 72.222 0.00 0.00 42.26 4.35
286 287 3.470888 ATCCCCAAGGCGGAGTCG 61.471 66.667 3.33 0.00 36.95 4.18
287 288 2.190578 CATCCCCAAGGCGGAGTC 59.809 66.667 3.33 0.00 36.56 3.36
288 289 2.610859 ACATCCCCAAGGCGGAGT 60.611 61.111 3.33 0.32 36.56 3.85
289 290 2.124570 CACATCCCCAAGGCGGAG 60.125 66.667 3.33 0.00 36.56 4.63
290 291 4.424711 GCACATCCCCAAGGCGGA 62.425 66.667 0.00 0.00 36.56 5.54
291 292 3.944250 AAGCACATCCCCAAGGCGG 62.944 63.158 0.00 0.00 0.00 6.13
292 293 1.937546 GAAAGCACATCCCCAAGGCG 61.938 60.000 0.00 0.00 0.00 5.52
293 294 0.613012 AGAAAGCACATCCCCAAGGC 60.613 55.000 0.00 0.00 0.00 4.35
294 295 1.928868 AAGAAAGCACATCCCCAAGG 58.071 50.000 0.00 0.00 0.00 3.61
295 296 3.575687 AGAAAAGAAAGCACATCCCCAAG 59.424 43.478 0.00 0.00 0.00 3.61
296 297 3.573967 GAGAAAAGAAAGCACATCCCCAA 59.426 43.478 0.00 0.00 0.00 4.12
297 298 3.157087 GAGAAAAGAAAGCACATCCCCA 58.843 45.455 0.00 0.00 0.00 4.96
298 299 2.493675 GGAGAAAAGAAAGCACATCCCC 59.506 50.000 0.00 0.00 0.00 4.81
299 300 2.493675 GGGAGAAAAGAAAGCACATCCC 59.506 50.000 0.00 0.00 38.51 3.85
300 301 2.493675 GGGGAGAAAAGAAAGCACATCC 59.506 50.000 0.00 0.00 0.00 3.51
301 302 2.493675 GGGGGAGAAAAGAAAGCACATC 59.506 50.000 0.00 0.00 0.00 3.06
302 303 2.110721 AGGGGGAGAAAAGAAAGCACAT 59.889 45.455 0.00 0.00 0.00 3.21
303 304 1.499007 AGGGGGAGAAAAGAAAGCACA 59.501 47.619 0.00 0.00 0.00 4.57
304 305 2.294449 AGGGGGAGAAAAGAAAGCAC 57.706 50.000 0.00 0.00 0.00 4.40
305 306 4.600062 GAATAGGGGGAGAAAAGAAAGCA 58.400 43.478 0.00 0.00 0.00 3.91
306 307 3.628032 CGAATAGGGGGAGAAAAGAAAGC 59.372 47.826 0.00 0.00 0.00 3.51
307 308 4.876679 GTCGAATAGGGGGAGAAAAGAAAG 59.123 45.833 0.00 0.00 0.00 2.62
308 309 4.534897 AGTCGAATAGGGGGAGAAAAGAAA 59.465 41.667 0.00 0.00 0.00 2.52
309 310 4.081087 CAGTCGAATAGGGGGAGAAAAGAA 60.081 45.833 0.00 0.00 0.00 2.52
310 311 3.451178 CAGTCGAATAGGGGGAGAAAAGA 59.549 47.826 0.00 0.00 0.00 2.52
311 312 3.451178 TCAGTCGAATAGGGGGAGAAAAG 59.549 47.826 0.00 0.00 0.00 2.27
312 313 3.446968 TCAGTCGAATAGGGGGAGAAAA 58.553 45.455 0.00 0.00 0.00 2.29
313 314 3.110293 TCAGTCGAATAGGGGGAGAAA 57.890 47.619 0.00 0.00 0.00 2.52
314 315 2.840640 TCAGTCGAATAGGGGGAGAA 57.159 50.000 0.00 0.00 0.00 2.87
315 316 2.598565 CATCAGTCGAATAGGGGGAGA 58.401 52.381 0.00 0.00 0.00 3.71
316 317 1.001406 GCATCAGTCGAATAGGGGGAG 59.999 57.143 0.00 0.00 0.00 4.30
317 318 1.048601 GCATCAGTCGAATAGGGGGA 58.951 55.000 0.00 0.00 0.00 4.81
318 319 0.319900 CGCATCAGTCGAATAGGGGG 60.320 60.000 0.00 0.00 0.00 5.40
319 320 0.319900 CCGCATCAGTCGAATAGGGG 60.320 60.000 0.00 0.00 0.00 4.79
320 321 0.946221 GCCGCATCAGTCGAATAGGG 60.946 60.000 0.00 0.00 0.00 3.53
321 322 0.249447 TGCCGCATCAGTCGAATAGG 60.249 55.000 0.00 0.00 0.00 2.57
322 323 1.570813 TTGCCGCATCAGTCGAATAG 58.429 50.000 0.00 0.00 0.00 1.73
323 324 2.017138 TTTGCCGCATCAGTCGAATA 57.983 45.000 0.00 0.00 0.00 1.75
324 325 1.164411 TTTTGCCGCATCAGTCGAAT 58.836 45.000 0.00 0.00 0.00 3.34
325 326 0.947960 TTTTTGCCGCATCAGTCGAA 59.052 45.000 0.00 0.00 0.00 3.71
326 327 2.622965 TTTTTGCCGCATCAGTCGA 58.377 47.368 0.00 0.00 0.00 4.20
341 342 3.233507 TGAGCAAGCTCCTGGAATTTTT 58.766 40.909 18.54 0.00 42.09 1.94
342 343 2.880443 TGAGCAAGCTCCTGGAATTTT 58.120 42.857 18.54 0.00 42.09 1.82
343 344 2.592102 TGAGCAAGCTCCTGGAATTT 57.408 45.000 18.54 0.00 42.09 1.82
344 345 2.592102 TTGAGCAAGCTCCTGGAATT 57.408 45.000 18.54 0.00 42.09 2.17
345 346 2.822707 ATTGAGCAAGCTCCTGGAAT 57.177 45.000 18.54 9.13 42.09 3.01
346 347 3.272574 CTATTGAGCAAGCTCCTGGAA 57.727 47.619 18.54 7.24 42.09 3.53
347 348 2.996249 CTATTGAGCAAGCTCCTGGA 57.004 50.000 18.54 0.00 42.09 3.86
359 360 3.763097 TGTTTTCGCCATGCTATTGAG 57.237 42.857 0.00 0.00 0.00 3.02
360 361 5.826601 TTATGTTTTCGCCATGCTATTGA 57.173 34.783 0.00 0.00 0.00 2.57
361 362 8.746922 ATATTTATGTTTTCGCCATGCTATTG 57.253 30.769 0.00 0.00 0.00 1.90
362 363 9.410556 GAATATTTATGTTTTCGCCATGCTATT 57.589 29.630 0.00 0.00 0.00 1.73
363 364 8.796475 AGAATATTTATGTTTTCGCCATGCTAT 58.204 29.630 0.00 0.00 0.00 2.97
364 365 8.075574 CAGAATATTTATGTTTTCGCCATGCTA 58.924 33.333 0.00 0.00 0.00 3.49
365 366 6.919662 CAGAATATTTATGTTTTCGCCATGCT 59.080 34.615 0.00 0.00 0.00 3.79
366 367 6.917477 TCAGAATATTTATGTTTTCGCCATGC 59.083 34.615 0.00 0.00 0.00 4.06
367 368 8.344831 TCTCAGAATATTTATGTTTTCGCCATG 58.655 33.333 0.00 0.00 0.00 3.66
368 369 8.345565 GTCTCAGAATATTTATGTTTTCGCCAT 58.654 33.333 0.00 0.00 0.00 4.40
369 370 7.201696 GGTCTCAGAATATTTATGTTTTCGCCA 60.202 37.037 0.00 0.00 0.00 5.69
370 371 7.012421 AGGTCTCAGAATATTTATGTTTTCGCC 59.988 37.037 0.00 0.00 0.00 5.54
371 372 7.852945 CAGGTCTCAGAATATTTATGTTTTCGC 59.147 37.037 0.00 0.00 0.00 4.70
372 373 8.338259 CCAGGTCTCAGAATATTTATGTTTTCG 58.662 37.037 0.00 0.00 0.00 3.46
373 374 9.178758 ACCAGGTCTCAGAATATTTATGTTTTC 57.821 33.333 0.00 0.00 0.00 2.29
383 384 9.656323 TGTAACTAATACCAGGTCTCAGAATAT 57.344 33.333 0.00 0.00 33.27 1.28
384 385 8.910944 GTGTAACTAATACCAGGTCTCAGAATA 58.089 37.037 0.00 0.00 33.27 1.75
385 386 7.147707 GGTGTAACTAATACCAGGTCTCAGAAT 60.148 40.741 0.00 0.00 36.74 2.40
386 387 6.154021 GGTGTAACTAATACCAGGTCTCAGAA 59.846 42.308 0.00 0.00 36.74 3.02
387 388 5.655532 GGTGTAACTAATACCAGGTCTCAGA 59.344 44.000 0.00 0.00 36.74 3.27
388 389 5.163437 GGGTGTAACTAATACCAGGTCTCAG 60.163 48.000 0.00 0.00 36.19 3.35
389 390 4.713321 GGGTGTAACTAATACCAGGTCTCA 59.287 45.833 0.00 0.00 36.19 3.27
390 391 4.202090 CGGGTGTAACTAATACCAGGTCTC 60.202 50.000 0.00 0.00 36.19 3.36
391 392 3.703052 CGGGTGTAACTAATACCAGGTCT 59.297 47.826 0.00 0.00 36.19 3.85
392 393 3.701040 TCGGGTGTAACTAATACCAGGTC 59.299 47.826 0.00 0.00 36.19 3.85
393 394 3.711863 TCGGGTGTAACTAATACCAGGT 58.288 45.455 0.00 0.00 36.19 4.00
394 395 4.741321 TTCGGGTGTAACTAATACCAGG 57.259 45.455 0.00 0.00 36.19 4.45
395 396 6.259387 GGAAATTCGGGTGTAACTAATACCAG 59.741 42.308 0.00 0.00 36.19 4.00
396 397 6.114767 GGAAATTCGGGTGTAACTAATACCA 58.885 40.000 0.00 0.00 36.19 3.25
397 398 5.234972 CGGAAATTCGGGTGTAACTAATACC 59.765 44.000 0.00 0.00 36.74 2.73
398 399 5.234972 CCGGAAATTCGGGTGTAACTAATAC 59.765 44.000 10.97 0.00 45.78 1.89
408 409 3.507786 GAAATTTCCGGAAATTCGGGTG 58.492 45.455 41.03 0.00 46.76 4.61
421 422 4.529109 TCCCATTTTCACCGAAATTTCC 57.471 40.909 12.54 0.00 31.34 3.13
428 431 0.331278 AGGCATCCCATTTTCACCGA 59.669 50.000 0.00 0.00 0.00 4.69
431 434 3.448301 TCAATCAGGCATCCCATTTTCAC 59.552 43.478 0.00 0.00 0.00 3.18
432 435 3.702548 CTCAATCAGGCATCCCATTTTCA 59.297 43.478 0.00 0.00 0.00 2.69
459 462 5.728351 AATTTACCAACGTCCATATCGTG 57.272 39.130 0.00 0.00 41.38 4.35
565 568 4.187694 TGTGGTGCCAAATTTTCTGTTTC 58.812 39.130 0.00 0.00 0.00 2.78
579 583 0.887387 TCTTTACCGCTTGTGGTGCC 60.887 55.000 15.31 0.00 43.68 5.01
687 691 0.178068 TCAAAGATACGAGCCAGCCC 59.822 55.000 0.00 0.00 0.00 5.19
689 693 1.929836 CAGTCAAAGATACGAGCCAGC 59.070 52.381 0.00 0.00 0.00 4.85
708 712 1.010046 AGGAGGGAGATGATTGGTCCA 59.990 52.381 0.00 0.00 31.31 4.02
714 718 2.324541 CGGAAGAGGAGGGAGATGATT 58.675 52.381 0.00 0.00 0.00 2.57
722 726 2.060980 CAGGGACGGAAGAGGAGGG 61.061 68.421 0.00 0.00 0.00 4.30
783 801 2.696759 GGATTCCCCCGCAACGTTG 61.697 63.158 23.90 23.90 0.00 4.10
821 839 6.313252 CGAGTTTATATAGGTTCGGTAGCTC 58.687 44.000 0.00 0.00 35.80 4.09
988 1016 2.279741 CGCCGCCATATATGTATGCTT 58.720 47.619 11.73 0.00 37.06 3.91
1086 1117 1.067364 TGCACGACGGACTTGAAGTTA 59.933 47.619 0.00 0.00 0.00 2.24
1220 1254 4.778415 CCGTCGTCAGCTGGTCGG 62.778 72.222 23.75 21.29 0.00 4.79
1363 1397 2.028385 AGTAAGGAAAGCCGTTGACGAT 60.028 45.455 4.91 0.00 43.02 3.73
1390 1424 0.953471 CACGATTCTTCACGGGCCAA 60.953 55.000 4.39 0.00 0.00 4.52
1442 1531 2.298163 AGTGAGCATTTGAGCAAAAGGG 59.702 45.455 0.00 0.00 36.85 3.95
1487 1576 4.261197 CCTCTTACTTCCACTTGTGTTTGC 60.261 45.833 0.00 0.00 0.00 3.68
1542 1631 5.230942 TCTCTTTCTTCTACCTTTTCGCTG 58.769 41.667 0.00 0.00 0.00 5.18
1553 1642 6.528321 CATACATGCCCATCTCTTTCTTCTA 58.472 40.000 0.00 0.00 0.00 2.10
1570 1659 1.532505 GCTCGTTTGCCAGCATACATG 60.533 52.381 12.61 0.00 35.56 3.21
1587 1676 1.053811 GAAGACGACACACTTCGCTC 58.946 55.000 0.00 0.00 43.06 5.03
1591 1681 2.395654 GACAGGAAGACGACACACTTC 58.604 52.381 0.00 0.00 40.91 3.01
1593 1683 0.311165 CGACAGGAAGACGACACACT 59.689 55.000 0.00 0.00 37.60 3.55
1671 2190 2.787473 TGGAAACATCCTGAGCGATT 57.213 45.000 0.00 0.00 33.40 3.34
1672 2191 2.787473 TTGGAAACATCCTGAGCGAT 57.213 45.000 0.00 0.00 42.32 4.58
1748 2267 6.592607 TCGGGTTTCACTGAAGATTATAACAC 59.407 38.462 0.00 0.00 0.00 3.32
1749 2268 6.703319 TCGGGTTTCACTGAAGATTATAACA 58.297 36.000 0.00 0.00 0.00 2.41
1750 2269 7.605410 TTCGGGTTTCACTGAAGATTATAAC 57.395 36.000 0.00 0.00 32.27 1.89
1774 2294 2.289694 CGTTCAGTTCAGGTCAGGGAAT 60.290 50.000 0.00 0.00 0.00 3.01
1776 2296 0.679505 CGTTCAGTTCAGGTCAGGGA 59.320 55.000 0.00 0.00 0.00 4.20
1787 2307 2.288886 GCTAGGGTTCAGTCGTTCAGTT 60.289 50.000 0.00 0.00 0.00 3.16
1801 2321 0.179000 CCTGATTGAAGCGCTAGGGT 59.821 55.000 12.05 0.00 0.00 4.34
1802 2322 0.465705 TCCTGATTGAAGCGCTAGGG 59.534 55.000 19.06 1.65 0.00 3.53
1819 2339 1.157585 GGAGGCAGTCGTTTTCTTCC 58.842 55.000 0.00 0.00 0.00 3.46
1853 2373 3.818787 GTGCAGATGCGGGCAAGG 61.819 66.667 0.00 0.00 45.83 3.61
1861 2381 3.129913 GAATGGCCGGTGCAGATGC 62.130 63.158 1.90 0.00 40.13 3.91
1890 2410 2.835605 CCGAGTACAACGGCACAAT 58.164 52.632 16.11 0.00 43.74 2.71
1899 2419 2.208527 GGAGATGCCCCGAGTACAA 58.791 57.895 0.00 0.00 0.00 2.41
1900 2420 3.950232 GGAGATGCCCCGAGTACA 58.050 61.111 0.00 0.00 0.00 2.90
1917 2437 1.073177 AAAATTACCGGTCAGCGTCG 58.927 50.000 12.40 0.00 0.00 5.12
1918 2438 1.465187 GCAAAATTACCGGTCAGCGTC 60.465 52.381 12.40 0.00 0.00 5.19
1928 2448 7.277760 GTGGACAAATATTGGAGCAAAATTACC 59.722 37.037 0.00 0.00 34.12 2.85
1951 2471 3.127548 CAGATTGATTCCTTTGTCCGTGG 59.872 47.826 0.00 0.00 0.00 4.94
1958 2478 4.458295 AGTGTCTGCAGATTGATTCCTTTG 59.542 41.667 21.47 0.00 0.00 2.77
1960 2480 4.008330 CAGTGTCTGCAGATTGATTCCTT 58.992 43.478 21.47 0.00 0.00 3.36
1964 2484 3.945921 CCATCAGTGTCTGCAGATTGATT 59.054 43.478 25.94 15.51 0.00 2.57
1969 2489 1.065636 CCACCATCAGTGTCTGCAGAT 60.066 52.381 21.47 0.00 45.74 2.90
1975 2495 0.891373 CGTCTCCACCATCAGTGTCT 59.109 55.000 0.00 0.00 45.74 3.41
1986 2506 0.468226 TATTGGATGGCCGTCTCCAC 59.532 55.000 24.11 8.38 41.20 4.02
1987 2507 0.468226 GTATTGGATGGCCGTCTCCA 59.532 55.000 24.11 19.48 39.78 3.86
1989 2509 1.871080 CAGTATTGGATGGCCGTCTC 58.129 55.000 24.11 14.61 36.79 3.36
1992 2512 1.152963 GGCAGTATTGGATGGCCGT 60.153 57.895 0.00 0.00 36.06 5.68
1999 2519 9.073475 GTTTAAATATATGTGGGCAGTATTGGA 57.927 33.333 0.00 0.00 0.00 3.53
2005 2525 7.954666 AGTTGTTTAAATATATGTGGGCAGT 57.045 32.000 0.00 0.00 0.00 4.40
2041 2561 6.709643 CCGTGTTTGCATGAATTTTGTTTAA 58.290 32.000 0.00 0.00 33.58 1.52
2043 2563 4.495514 GCCGTGTTTGCATGAATTTTGTTT 60.496 37.500 0.00 0.00 33.58 2.83
2044 2564 3.002144 GCCGTGTTTGCATGAATTTTGTT 59.998 39.130 0.00 0.00 33.58 2.83
2065 2585 5.300792 TCCCCTAAATGTATTGAAAATCCGC 59.699 40.000 0.00 0.00 0.00 5.54
2093 2613 9.113797 GATAGGTTTAGGGTAGGATAGGATTTT 57.886 37.037 0.00 0.00 0.00 1.82
2097 2617 6.240793 CCAGATAGGTTTAGGGTAGGATAGGA 60.241 46.154 0.00 0.00 0.00 2.94
2098 2618 5.958987 CCAGATAGGTTTAGGGTAGGATAGG 59.041 48.000 0.00 0.00 0.00 2.57
2140 3035 1.008309 GATCTACGAGGCCGCTCAC 60.008 63.158 4.53 0.00 39.95 3.51
2175 3070 4.367023 TCGGCGAACCCCAACTCG 62.367 66.667 7.35 0.00 38.11 4.18
2221 3116 0.815615 CGGAGGGCCAAATAGACAGC 60.816 60.000 6.18 0.00 0.00 4.40
2245 3140 4.544689 CTCCTCGAGCAGCGTCGG 62.545 72.222 6.99 0.00 40.49 4.79
2250 3145 0.739112 CCTGTTTCTCCTCGAGCAGC 60.739 60.000 6.99 0.00 0.00 5.25
2251 3146 0.605589 ACCTGTTTCTCCTCGAGCAG 59.394 55.000 6.99 0.51 0.00 4.24
2268 3163 1.071228 AGGAGGAACAACGGTACAACC 59.929 52.381 0.00 0.00 34.05 3.77
2277 3172 2.032681 AGGCGCAGGAGGAACAAC 59.967 61.111 10.83 0.00 0.00 3.32
2283 3178 3.907260 TTTCAGCAGGCGCAGGAGG 62.907 63.158 10.83 0.00 42.27 4.30
2288 3183 3.286751 GGTGTTTCAGCAGGCGCA 61.287 61.111 10.83 0.00 42.27 6.09
2299 3194 1.743995 GGCGCCTATGTCGGTGTTT 60.744 57.895 22.15 0.00 36.91 2.83
2338 3233 0.734309 CGCACTTCAATGCTGCCATA 59.266 50.000 0.00 0.00 43.80 2.74
2341 3236 2.505557 GCGCACTTCAATGCTGCC 60.506 61.111 0.30 0.00 43.80 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.