Multiple sequence alignment - TraesCS7D01G325400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G325400 chr7D 100.000 2198 0 0 898 3095 415746438 415744241 0.000000e+00 4060
1 TraesCS7D01G325400 chr7D 100.000 336 0 0 1 336 415747335 415747000 3.390000e-174 621
2 TraesCS7D01G325400 chr3D 89.017 783 64 5 1590 2369 587064256 587063493 0.000000e+00 950
3 TraesCS7D01G325400 chr3D 90.694 677 48 5 899 1566 587065115 587064445 0.000000e+00 887
4 TraesCS7D01G325400 chr3D 90.820 512 35 8 2397 2898 587063427 587062918 0.000000e+00 675
5 TraesCS7D01G325400 chr3D 82.564 195 15 10 102 289 587065413 587065231 1.490000e-33 154
6 TraesCS7D01G325400 chr3B 88.672 512 36 11 2397 2898 783657596 783657097 3.410000e-169 604
7 TraesCS7D01G325400 chr3B 90.909 187 14 1 2109 2292 811775050 811775236 6.630000e-62 248
8 TraesCS7D01G325400 chr3B 81.818 187 34 0 2905 3091 40533580 40533394 1.150000e-34 158
9 TraesCS7D01G325400 chr1D 83.981 206 26 4 2894 3095 40809174 40808972 1.130000e-44 191
10 TraesCS7D01G325400 chr1D 81.977 172 28 3 2923 3093 203458480 203458649 3.220000e-30 143
11 TraesCS7D01G325400 chr6B 82.673 202 34 1 2893 3093 544697757 544697958 8.820000e-41 178
12 TraesCS7D01G325400 chr7A 83.158 190 30 2 2894 3082 133051755 133051567 4.100000e-39 172
13 TraesCS7D01G325400 chr4D 81.000 200 38 0 2894 3093 450528927 450529126 3.190000e-35 159
14 TraesCS7D01G325400 chr4D 79.208 202 38 3 2894 3093 450533521 450533720 1.500000e-28 137
15 TraesCS7D01G325400 chrUn 78.058 278 41 14 970 1243 45578664 45578403 1.150000e-34 158
16 TraesCS7D01G325400 chr5A 80.729 192 32 3 2894 3082 540287044 540287233 8.950000e-31 145
17 TraesCS7D01G325400 chr7B 79.602 201 38 3 2894 3093 238600055 238600253 1.160000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G325400 chr7D 415744241 415747335 3094 True 2340.5 4060 100.00000 1 3095 2 chr7D.!!$R1 3094
1 TraesCS7D01G325400 chr3D 587062918 587065413 2495 True 666.5 950 88.27375 102 2898 4 chr3D.!!$R1 2796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 299 0.029163 TCCAGCTCCATTCCCCCATA 60.029 55.0 0.0 0.0 0.0 2.74 F
1456 1465 0.034896 GACAGAGGAGGCCGTTGAAA 59.965 55.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 1977 0.034896 TCTCTTGGCCGAGGAACAAC 59.965 55.0 20.46 0.0 0.0 3.32 R
2384 2581 0.034670 AGCAGATTTCCTCCACCAGC 60.035 55.0 0.00 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.827505 ACCAGTGACAGCCAAACAT 57.172 47.368 0.00 0.00 0.00 2.71
19 20 1.321474 ACCAGTGACAGCCAAACATG 58.679 50.000 0.00 0.00 0.00 3.21
20 21 1.133823 ACCAGTGACAGCCAAACATGA 60.134 47.619 0.00 0.00 0.00 3.07
21 22 2.165167 CCAGTGACAGCCAAACATGAT 58.835 47.619 0.00 0.00 0.00 2.45
22 23 3.244875 ACCAGTGACAGCCAAACATGATA 60.245 43.478 0.00 0.00 0.00 2.15
23 24 3.949754 CCAGTGACAGCCAAACATGATAT 59.050 43.478 0.00 0.00 0.00 1.63
24 25 4.400251 CCAGTGACAGCCAAACATGATATT 59.600 41.667 0.00 0.00 0.00 1.28
25 26 5.105635 CCAGTGACAGCCAAACATGATATTT 60.106 40.000 0.00 0.00 0.00 1.40
26 27 6.392354 CAGTGACAGCCAAACATGATATTTT 58.608 36.000 0.00 0.00 0.00 1.82
27 28 6.309494 CAGTGACAGCCAAACATGATATTTTG 59.691 38.462 0.00 0.00 33.30 2.44
28 29 6.209192 AGTGACAGCCAAACATGATATTTTGA 59.791 34.615 0.00 0.00 35.13 2.69
29 30 7.037438 GTGACAGCCAAACATGATATTTTGAT 58.963 34.615 0.00 0.00 35.13 2.57
30 31 7.546667 GTGACAGCCAAACATGATATTTTGATT 59.453 33.333 0.00 0.00 35.13 2.57
31 32 7.760794 TGACAGCCAAACATGATATTTTGATTC 59.239 33.333 0.00 0.00 35.13 2.52
32 33 7.043565 ACAGCCAAACATGATATTTTGATTCC 58.956 34.615 0.00 0.00 35.13 3.01
33 34 7.042950 CAGCCAAACATGATATTTTGATTCCA 58.957 34.615 0.00 0.00 35.13 3.53
34 35 7.223971 CAGCCAAACATGATATTTTGATTCCAG 59.776 37.037 0.00 0.00 35.13 3.86
35 36 6.018507 GCCAAACATGATATTTTGATTCCAGC 60.019 38.462 0.00 0.00 35.13 4.85
36 37 7.042950 CCAAACATGATATTTTGATTCCAGCA 58.957 34.615 0.00 0.00 35.13 4.41
37 38 7.713507 CCAAACATGATATTTTGATTCCAGCAT 59.286 33.333 0.00 0.00 35.13 3.79
38 39 9.752961 CAAACATGATATTTTGATTCCAGCATA 57.247 29.630 0.00 0.00 35.13 3.14
40 41 9.923143 AACATGATATTTTGATTCCAGCATATG 57.077 29.630 0.00 0.00 0.00 1.78
41 42 9.304335 ACATGATATTTTGATTCCAGCATATGA 57.696 29.630 6.97 0.00 0.00 2.15
47 48 5.694231 TTGATTCCAGCATATGAAATCCG 57.306 39.130 6.97 0.00 0.00 4.18
48 49 4.971939 TGATTCCAGCATATGAAATCCGA 58.028 39.130 6.97 0.00 0.00 4.55
49 50 5.563592 TGATTCCAGCATATGAAATCCGAT 58.436 37.500 6.97 0.00 0.00 4.18
50 51 5.645067 TGATTCCAGCATATGAAATCCGATC 59.355 40.000 6.97 1.63 0.00 3.69
51 52 4.622260 TCCAGCATATGAAATCCGATCA 57.378 40.909 6.97 0.00 0.00 2.92
52 53 5.169992 TCCAGCATATGAAATCCGATCAT 57.830 39.130 6.97 0.00 40.49 2.45
53 54 6.298441 TCCAGCATATGAAATCCGATCATA 57.702 37.500 6.97 0.00 42.30 2.15
54 55 6.343703 TCCAGCATATGAAATCCGATCATAG 58.656 40.000 6.97 0.00 41.62 2.23
55 56 6.155049 TCCAGCATATGAAATCCGATCATAGA 59.845 38.462 6.97 0.00 41.62 1.98
56 57 6.990939 CCAGCATATGAAATCCGATCATAGAT 59.009 38.462 6.97 0.00 41.62 1.98
57 58 7.498239 CCAGCATATGAAATCCGATCATAGATT 59.502 37.037 6.97 0.00 41.62 2.40
58 59 8.890718 CAGCATATGAAATCCGATCATAGATTT 58.109 33.333 6.97 12.66 43.58 2.17
90 91 9.826574 CATATGAAATGAAATGAAATTCCAGGT 57.173 29.630 0.00 0.00 33.67 4.00
91 92 9.826574 ATATGAAATGAAATGAAATTCCAGGTG 57.173 29.630 0.00 0.00 33.67 4.00
92 93 5.933463 TGAAATGAAATGAAATTCCAGGTGC 59.067 36.000 0.00 0.00 33.67 5.01
93 94 3.959535 TGAAATGAAATTCCAGGTGCC 57.040 42.857 0.00 0.00 33.67 5.01
94 95 3.237746 TGAAATGAAATTCCAGGTGCCA 58.762 40.909 0.00 0.00 33.67 4.92
95 96 3.645212 TGAAATGAAATTCCAGGTGCCAA 59.355 39.130 0.00 0.00 33.67 4.52
96 97 4.102210 TGAAATGAAATTCCAGGTGCCAAA 59.898 37.500 0.00 0.00 33.67 3.28
97 98 3.683365 ATGAAATTCCAGGTGCCAAAC 57.317 42.857 0.00 0.00 0.00 2.93
98 99 1.339610 TGAAATTCCAGGTGCCAAACG 59.660 47.619 0.00 0.00 0.00 3.60
99 100 1.611491 GAAATTCCAGGTGCCAAACGA 59.389 47.619 0.00 0.00 0.00 3.85
100 101 0.958822 AATTCCAGGTGCCAAACGAC 59.041 50.000 0.00 0.00 0.00 4.34
114 115 5.151389 GCCAAACGACCTGTAAGTTTATTG 58.849 41.667 0.00 0.00 36.46 1.90
119 120 5.850614 ACGACCTGTAAGTTTATTGAGTGT 58.149 37.500 0.00 0.00 0.00 3.55
121 122 7.436118 ACGACCTGTAAGTTTATTGAGTGTTA 58.564 34.615 0.00 0.00 0.00 2.41
137 138 7.429636 TGAGTGTTAAAAACCGATAGAAAGG 57.570 36.000 0.00 0.00 39.76 3.11
139 140 5.182570 AGTGTTAAAAACCGATAGAAAGGGC 59.817 40.000 0.00 0.00 39.76 5.19
141 142 5.712917 TGTTAAAAACCGATAGAAAGGGCAT 59.287 36.000 0.00 0.00 39.76 4.40
142 143 4.983671 AAAAACCGATAGAAAGGGCATC 57.016 40.909 0.00 0.00 39.76 3.91
143 144 3.933861 AAACCGATAGAAAGGGCATCT 57.066 42.857 0.00 0.00 39.76 2.90
144 145 2.918712 ACCGATAGAAAGGGCATCTG 57.081 50.000 0.00 0.00 39.76 2.90
145 146 1.417890 ACCGATAGAAAGGGCATCTGG 59.582 52.381 0.00 0.00 39.76 3.86
185 186 0.331616 AAGCCGACCCTAAGCCATTT 59.668 50.000 0.00 0.00 0.00 2.32
186 187 0.107165 AGCCGACCCTAAGCCATTTC 60.107 55.000 0.00 0.00 0.00 2.17
190 191 1.475213 CGACCCTAAGCCATTTCCTCC 60.475 57.143 0.00 0.00 0.00 4.30
191 192 1.564348 GACCCTAAGCCATTTCCTCCA 59.436 52.381 0.00 0.00 0.00 3.86
192 193 2.000048 ACCCTAAGCCATTTCCTCCAA 59.000 47.619 0.00 0.00 0.00 3.53
193 194 2.381961 ACCCTAAGCCATTTCCTCCAAA 59.618 45.455 0.00 0.00 0.00 3.28
194 195 3.181412 ACCCTAAGCCATTTCCTCCAAAA 60.181 43.478 0.00 0.00 0.00 2.44
223 224 1.222113 CGAGCTTCCTTCTTCCCCC 59.778 63.158 0.00 0.00 0.00 5.40
233 234 1.007607 TTCTTCCCCCAAATCCTCCC 58.992 55.000 0.00 0.00 0.00 4.30
234 235 1.227383 CTTCCCCCAAATCCTCCCG 59.773 63.158 0.00 0.00 0.00 5.14
235 236 2.284515 CTTCCCCCAAATCCTCCCGG 62.285 65.000 0.00 0.00 0.00 5.73
289 295 0.182299 CTTCTCCAGCTCCATTCCCC 59.818 60.000 0.00 0.00 0.00 4.81
290 296 1.281925 TTCTCCAGCTCCATTCCCCC 61.282 60.000 0.00 0.00 0.00 5.40
291 297 2.002977 CTCCAGCTCCATTCCCCCA 61.003 63.158 0.00 0.00 0.00 4.96
292 298 1.309013 TCCAGCTCCATTCCCCCAT 60.309 57.895 0.00 0.00 0.00 4.00
293 299 0.029163 TCCAGCTCCATTCCCCCATA 60.029 55.000 0.00 0.00 0.00 2.74
294 300 0.111253 CCAGCTCCATTCCCCCATAC 59.889 60.000 0.00 0.00 0.00 2.39
295 301 0.846015 CAGCTCCATTCCCCCATACA 59.154 55.000 0.00 0.00 0.00 2.29
296 302 1.215173 CAGCTCCATTCCCCCATACAA 59.785 52.381 0.00 0.00 0.00 2.41
297 303 1.496429 AGCTCCATTCCCCCATACAAG 59.504 52.381 0.00 0.00 0.00 3.16
309 315 2.290896 CCCATACAAGTTTGCTCCCAGA 60.291 50.000 0.00 0.00 0.00 3.86
319 325 2.419198 CTCCCAGAAGATCCGCCG 59.581 66.667 0.00 0.00 0.00 6.46
918 924 2.376063 TGGCCTATCCATCATCCCG 58.624 57.895 3.32 0.00 40.72 5.14
925 931 1.746157 ATCCATCATCCCGGAATGGA 58.254 50.000 19.18 19.18 44.44 3.41
1048 1054 3.885521 GCTCTGCCATCGCCAAGC 61.886 66.667 0.00 0.00 35.27 4.01
1056 1062 2.109799 ATCGCCAAGCCATCTCCG 59.890 61.111 0.00 0.00 0.00 4.63
1057 1063 4.838152 TCGCCAAGCCATCTCCGC 62.838 66.667 0.00 0.00 0.00 5.54
1107 1113 3.129502 CGCCACTGGGTCATGCTG 61.130 66.667 0.00 0.00 36.17 4.41
1131 1137 3.708734 CAACCCGACGACCGCAAC 61.709 66.667 0.00 0.00 36.84 4.17
1137 1143 3.456039 GACGACCGCAACGACGAC 61.456 66.667 0.00 4.24 34.06 4.34
1140 1146 2.503375 GACCGCAACGACGACGAT 60.503 61.111 15.32 0.00 42.66 3.73
1141 1147 2.774951 GACCGCAACGACGACGATG 61.775 63.158 15.32 13.82 43.34 3.84
1142 1148 2.503158 CCGCAACGACGACGATGA 60.503 61.111 20.02 0.00 43.20 2.92
1143 1149 2.681666 CGCAACGACGACGATGAC 59.318 61.111 20.02 10.73 43.20 3.06
1228 1234 2.922950 AACTTCGTCGCCGGTGCTA 61.923 57.895 11.05 0.00 34.43 3.49
1230 1236 3.338126 CTTCGTCGCCGGTGCTACT 62.338 63.158 11.05 0.00 31.33 2.57
1247 1253 3.669036 CTGACGGTCTCCTCGTGCG 62.669 68.421 9.88 0.00 41.22 5.34
1263 1269 2.818841 CGCGGGGACATGTATCCA 59.181 61.111 16.62 0.00 40.96 3.41
1290 1296 2.047179 GCTCGTGTCCTCAACCCC 60.047 66.667 0.00 0.00 0.00 4.95
1340 1346 2.667481 CGGCGTTACCTCGACATTTTAA 59.333 45.455 0.00 0.00 38.97 1.52
1341 1347 3.241868 CGGCGTTACCTCGACATTTTAAG 60.242 47.826 0.00 0.00 38.97 1.85
1342 1348 3.484721 GGCGTTACCTCGACATTTTAAGC 60.485 47.826 0.00 0.00 38.86 3.09
1343 1349 3.123959 GCGTTACCTCGACATTTTAAGCA 59.876 43.478 0.00 0.00 0.00 3.91
1369 1378 0.915364 GGTGAAGGGAGGCTCTCATT 59.085 55.000 18.31 9.76 31.08 2.57
1371 1380 1.556911 GTGAAGGGAGGCTCTCATTCA 59.443 52.381 18.31 20.06 36.27 2.57
1402 1411 3.083349 TGAGATGGGGCTCGGTGG 61.083 66.667 0.00 0.00 37.73 4.61
1426 1435 2.436646 CTGCCCCGAACAGCGATT 60.437 61.111 0.00 0.00 44.57 3.34
1435 1444 3.181520 CCCGAACAGCGATTTCTTTACAG 60.182 47.826 0.00 0.00 44.57 2.74
1456 1465 0.034896 GACAGAGGAGGCCGTTGAAA 59.965 55.000 0.00 0.00 0.00 2.69
1475 1484 0.685097 ACGTACCTGGTGAGCATTGT 59.315 50.000 10.23 0.00 0.00 2.71
1481 1490 4.634012 ACCTGGTGAGCATTGTTAACTA 57.366 40.909 7.22 0.00 0.00 2.24
1485 1494 4.720046 TGGTGAGCATTGTTAACTACCAA 58.280 39.130 7.22 0.00 34.33 3.67
1508 1517 0.577269 GACGTCTATTGTGCCGATGC 59.423 55.000 8.70 0.00 38.26 3.91
1509 1518 1.145759 ACGTCTATTGTGCCGATGCG 61.146 55.000 0.00 0.00 41.78 4.73
1566 1581 4.120589 CAGACCAGTGTGATGATGATGAG 58.879 47.826 0.00 0.00 0.00 2.90
1567 1582 2.871022 GACCAGTGTGATGATGATGAGC 59.129 50.000 0.00 0.00 0.00 4.26
1568 1583 2.504585 ACCAGTGTGATGATGATGAGCT 59.495 45.455 0.00 0.00 0.00 4.09
1569 1584 3.132160 CCAGTGTGATGATGATGAGCTC 58.868 50.000 6.82 6.82 0.00 4.09
1570 1585 3.132160 CAGTGTGATGATGATGAGCTCC 58.868 50.000 12.15 0.00 0.00 4.70
1571 1586 3.039743 AGTGTGATGATGATGAGCTCCT 58.960 45.455 12.15 0.00 0.00 3.69
1572 1587 3.132160 GTGTGATGATGATGAGCTCCTG 58.868 50.000 12.15 0.00 0.00 3.86
1574 1589 2.104451 GTGATGATGATGAGCTCCTGGT 59.896 50.000 12.15 0.00 0.00 4.00
1575 1590 2.367894 TGATGATGATGAGCTCCTGGTC 59.632 50.000 12.15 5.36 40.79 4.02
1581 1596 2.916355 TGAGCTCCTGGTCATACCC 58.084 57.895 12.15 0.00 44.58 3.69
1584 1599 0.757188 AGCTCCTGGTCATACCCGAG 60.757 60.000 0.00 6.10 37.50 4.63
1586 1601 0.397254 CTCCTGGTCATACCCGAGGT 60.397 60.000 0.00 1.14 37.50 3.85
1587 1602 0.686441 TCCTGGTCATACCCGAGGTG 60.686 60.000 5.90 0.00 37.50 4.00
1588 1603 0.976073 CCTGGTCATACCCGAGGTGT 60.976 60.000 5.90 0.00 37.50 4.16
1612 1792 0.599204 GCCGGGTGTGGACGTATATG 60.599 60.000 2.18 0.00 0.00 1.78
1615 1795 1.865865 GGGTGTGGACGTATATGCAG 58.134 55.000 0.00 0.00 0.00 4.41
1624 1804 3.057174 GGACGTATATGCAGAAGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
1625 1805 3.821600 GACGTATATGCAGAAGAGGGAGA 59.178 47.826 0.00 0.00 0.00 3.71
1626 1806 4.411927 ACGTATATGCAGAAGAGGGAGAT 58.588 43.478 0.00 0.00 0.00 2.75
1627 1807 4.219507 ACGTATATGCAGAAGAGGGAGATG 59.780 45.833 0.00 0.00 0.00 2.90
1628 1808 4.460731 CGTATATGCAGAAGAGGGAGATGA 59.539 45.833 0.00 0.00 0.00 2.92
1629 1809 5.126869 CGTATATGCAGAAGAGGGAGATGAT 59.873 44.000 0.00 0.00 0.00 2.45
1657 1837 7.222161 TGATGATACAAAAGAGGGAGATGATG 58.778 38.462 0.00 0.00 0.00 3.07
1658 1838 5.933617 TGATACAAAAGAGGGAGATGATGG 58.066 41.667 0.00 0.00 0.00 3.51
1702 1882 1.484444 GGAGTCTGCTGGGGAACTGT 61.484 60.000 0.00 0.00 0.00 3.55
1707 1887 0.825010 CTGCTGGGGAACTGTTGCTT 60.825 55.000 11.83 0.00 0.00 3.91
1711 1891 1.338020 CTGGGGAACTGTTGCTTGTTC 59.662 52.381 11.83 0.00 41.08 3.18
1715 1895 1.871039 GGAACTGTTGCTTGTTCGCTA 59.129 47.619 4.68 0.00 42.28 4.26
1716 1896 2.484264 GGAACTGTTGCTTGTTCGCTAT 59.516 45.455 4.68 0.00 42.28 2.97
1719 1899 2.224079 ACTGTTGCTTGTTCGCTATGTG 59.776 45.455 0.00 0.00 0.00 3.21
1723 1903 2.009051 TGCTTGTTCGCTATGTGGATG 58.991 47.619 0.00 0.00 0.00 3.51
1770 1950 1.668751 GTCGAGCACAAGTTGTTGGAA 59.331 47.619 5.57 0.00 38.07 3.53
1824 2004 1.374758 CGGCCAAGAGAGGTGTGTC 60.375 63.158 2.24 0.00 0.00 3.67
1839 2019 0.036577 GTGTCTCTGTGGATGCAGCT 60.037 55.000 0.22 0.00 36.49 4.24
1848 2028 2.315246 GGATGCAGCTAAGCTTCCG 58.685 57.895 0.00 0.00 45.23 4.30
1851 2031 0.539051 ATGCAGCTAAGCTTCCGTCT 59.461 50.000 0.00 0.00 36.40 4.18
1912 2092 3.615937 CGTGTCCATGTCAGATTCTGAAG 59.384 47.826 17.73 10.66 42.46 3.02
1913 2093 4.619160 CGTGTCCATGTCAGATTCTGAAGA 60.619 45.833 17.73 8.33 42.46 2.87
1915 2095 4.284234 TGTCCATGTCAGATTCTGAAGACA 59.716 41.667 22.96 22.96 42.46 3.41
1945 2125 2.573009 TCAGATTCTGAAGACATGCCCA 59.427 45.455 13.96 0.00 37.57 5.36
1947 2127 3.952323 CAGATTCTGAAGACATGCCCATT 59.048 43.478 8.00 0.00 32.44 3.16
1949 2129 5.021458 AGATTCTGAAGACATGCCCATTTT 58.979 37.500 0.00 0.00 0.00 1.82
1957 2137 6.095860 TGAAGACATGCCCATTTTAGATTCTG 59.904 38.462 0.00 0.00 0.00 3.02
1966 2146 6.183347 CCCATTTTAGATTCTGGAGACAAGT 58.817 40.000 0.00 0.00 42.06 3.16
1967 2147 6.094603 CCCATTTTAGATTCTGGAGACAAGTG 59.905 42.308 0.00 0.00 42.06 3.16
1968 2148 6.404074 CCATTTTAGATTCTGGAGACAAGTGC 60.404 42.308 0.00 0.00 42.06 4.40
1969 2149 2.376808 AGATTCTGGAGACAAGTGCG 57.623 50.000 0.00 0.00 42.06 5.34
1970 2150 1.895798 AGATTCTGGAGACAAGTGCGA 59.104 47.619 0.00 0.00 42.06 5.10
1971 2151 1.996191 GATTCTGGAGACAAGTGCGAC 59.004 52.381 0.00 0.00 42.06 5.19
1972 2152 0.750249 TTCTGGAGACAAGTGCGACA 59.250 50.000 0.00 0.00 42.06 4.35
1973 2153 0.969149 TCTGGAGACAAGTGCGACAT 59.031 50.000 0.00 0.00 42.06 3.06
1974 2154 1.073964 CTGGAGACAAGTGCGACATG 58.926 55.000 0.00 0.00 42.06 3.21
1995 2175 9.707269 GACATGTGCGTGTATAACCTAAGAGGT 62.707 44.444 1.15 0.00 40.82 3.85
2007 2187 2.774234 CCTAAGAGGTGACATGGTGGAT 59.226 50.000 0.00 0.00 0.00 3.41
2015 2195 7.248976 AGAGGTGACATGGTGGATATTATCTA 58.751 38.462 0.00 0.00 0.00 1.98
2029 2209 8.150945 TGGATATTATCTACAGCAAGGACTTTC 58.849 37.037 3.77 0.00 0.00 2.62
2043 2223 1.865340 GACTTTCGTGCTCGACCTTTT 59.135 47.619 10.88 0.00 46.03 2.27
2052 2232 2.152016 GCTCGACCTTTTAGCCTTGTT 58.848 47.619 0.00 0.00 0.00 2.83
2062 2242 4.706842 TTTAGCCTTGTTCAGGTTCTCT 57.293 40.909 0.00 0.00 46.07 3.10
2065 2245 2.173569 AGCCTTGTTCAGGTTCTCTTGT 59.826 45.455 0.00 0.00 46.07 3.16
2073 2253 2.037251 TCAGGTTCTCTTGTGGTACTGC 59.963 50.000 0.00 0.00 0.00 4.40
2094 2274 3.065371 GCGATGTCCTTCCCAAATTGTAG 59.935 47.826 0.00 0.00 0.00 2.74
2098 2278 3.655777 TGTCCTTCCCAAATTGTAGAGGT 59.344 43.478 0.00 0.00 0.00 3.85
2132 2312 0.321919 TGTTCTGGCCTTGCTGCTAG 60.322 55.000 3.32 4.04 40.83 3.42
2139 2319 1.812922 CCTTGCTGCTAGTGCCTCG 60.813 63.158 10.07 0.00 38.71 4.63
2171 2351 9.275398 CTGTGAGTAGTAGATTAAGTAGTAGGG 57.725 40.741 0.00 0.00 0.00 3.53
2180 2360 9.543783 GTAGATTAAGTAGTAGGGTTTTCCATG 57.456 37.037 0.00 0.00 42.91 3.66
2250 2433 3.853623 CATCGCTCGACTGATGCTA 57.146 52.632 8.69 0.00 35.97 3.49
2291 2474 4.884668 TCCTTATTTCAGTCCGTGTTCT 57.115 40.909 0.00 0.00 0.00 3.01
2292 2475 5.223449 TCCTTATTTCAGTCCGTGTTCTT 57.777 39.130 0.00 0.00 0.00 2.52
2293 2476 6.349243 TCCTTATTTCAGTCCGTGTTCTTA 57.651 37.500 0.00 0.00 0.00 2.10
2294 2477 6.395629 TCCTTATTTCAGTCCGTGTTCTTAG 58.604 40.000 0.00 0.00 0.00 2.18
2295 2478 6.014840 TCCTTATTTCAGTCCGTGTTCTTAGT 60.015 38.462 0.00 0.00 0.00 2.24
2296 2479 6.649557 CCTTATTTCAGTCCGTGTTCTTAGTT 59.350 38.462 0.00 0.00 0.00 2.24
2297 2480 7.148623 CCTTATTTCAGTCCGTGTTCTTAGTTC 60.149 40.741 0.00 0.00 0.00 3.01
2305 2488 6.015688 AGTCCGTGTTCTTAGTTCTGACAATA 60.016 38.462 0.00 0.00 0.00 1.90
2322 2505 5.931724 TGACAATAGGTGTGTTGTACTCATG 59.068 40.000 0.00 0.00 41.96 3.07
2327 2510 4.832248 AGGTGTGTTGTACTCATGGTATG 58.168 43.478 0.00 0.00 32.56 2.39
2334 2517 4.137116 TGTACTCATGGTATGACCTTGC 57.863 45.455 6.65 0.00 41.63 4.01
2362 2545 7.107542 GTCTGGTTACATCTTTAATGTACCCA 58.892 38.462 12.18 12.18 42.33 4.51
2380 2577 6.781014 TGTACCCATCGAATATCTAGGAACTT 59.219 38.462 0.00 0.00 41.75 2.66
2384 2581 7.039644 ACCCATCGAATATCTAGGAACTTACTG 60.040 40.741 0.00 0.00 41.75 2.74
2385 2582 6.809196 CCATCGAATATCTAGGAACTTACTGC 59.191 42.308 0.00 0.00 41.75 4.40
2386 2583 7.309499 CCATCGAATATCTAGGAACTTACTGCT 60.309 40.741 0.00 0.00 41.75 4.24
2387 2584 6.971602 TCGAATATCTAGGAACTTACTGCTG 58.028 40.000 0.00 0.00 41.75 4.41
2388 2585 6.016192 TCGAATATCTAGGAACTTACTGCTGG 60.016 42.308 0.00 0.00 41.75 4.85
2390 2587 4.744795 ATCTAGGAACTTACTGCTGGTG 57.255 45.455 0.00 0.00 41.75 4.17
2391 2588 2.832129 TCTAGGAACTTACTGCTGGTGG 59.168 50.000 0.00 0.00 41.75 4.61
2392 2589 1.729586 AGGAACTTACTGCTGGTGGA 58.270 50.000 0.00 0.00 27.25 4.02
2394 2591 1.339151 GGAACTTACTGCTGGTGGAGG 60.339 57.143 0.00 0.00 35.84 4.30
2395 2592 1.623811 GAACTTACTGCTGGTGGAGGA 59.376 52.381 0.00 0.00 35.84 3.71
2448 2670 7.609056 ACAAGTAGTACCATGTTCGAGTTAAT 58.391 34.615 0.00 0.00 0.00 1.40
2459 2681 9.212641 CCATGTTCGAGTTAATCTGAATGATAT 57.787 33.333 0.00 0.00 34.45 1.63
2465 2687 8.642432 TCGAGTTAATCTGAATGATATGAACCT 58.358 33.333 0.00 0.00 34.45 3.50
2514 2738 6.016777 CAGTTTTAGGCTCAATTGAAGTGACT 60.017 38.462 9.88 8.13 0.00 3.41
2522 2746 6.327934 GCTCAATTGAAGTGACTGCATTATT 58.672 36.000 9.88 0.00 0.00 1.40
2526 2750 9.013229 TCAATTGAAGTGACTGCATTATTAAGT 57.987 29.630 5.45 0.00 0.00 2.24
2534 2758 8.850156 AGTGACTGCATTATTAAGTGAAGTTTT 58.150 29.630 0.00 0.00 34.36 2.43
2548 2772 8.870075 AAGTGAAGTTTTTCAGGCTATAAGAT 57.130 30.769 0.00 0.00 43.66 2.40
2550 2774 7.337942 AGTGAAGTTTTTCAGGCTATAAGATGG 59.662 37.037 0.00 0.00 43.66 3.51
2551 2775 7.336931 GTGAAGTTTTTCAGGCTATAAGATGGA 59.663 37.037 0.00 0.00 43.66 3.41
2552 2776 7.336931 TGAAGTTTTTCAGGCTATAAGATGGAC 59.663 37.037 0.00 0.00 38.37 4.02
2553 2777 6.721318 AGTTTTTCAGGCTATAAGATGGACA 58.279 36.000 0.00 0.00 0.00 4.02
2554 2778 6.599638 AGTTTTTCAGGCTATAAGATGGACAC 59.400 38.462 0.00 0.00 0.00 3.67
2564 2791 1.740296 GATGGACACCGGTGGTTCG 60.740 63.158 36.47 13.60 31.02 3.95
2621 2848 2.553247 GCTACCTCTTTTCCTGCCTGTT 60.553 50.000 0.00 0.00 0.00 3.16
2635 2862 4.232221 CTGCCTGTTGCTTTGTTCTTATG 58.768 43.478 0.00 0.00 42.00 1.90
2653 2880 2.301738 GGGAACTAGGGCAGTGGCT 61.302 63.158 17.16 5.32 37.63 4.75
2654 2881 0.981277 GGGAACTAGGGCAGTGGCTA 60.981 60.000 17.16 6.21 37.63 3.93
2660 2887 1.542030 CTAGGGCAGTGGCTATCGTAG 59.458 57.143 17.16 6.44 40.87 3.51
2673 2900 3.687698 GCTATCGTAGTTGCAAAGGGAAA 59.312 43.478 0.00 0.00 0.00 3.13
2674 2901 4.201822 GCTATCGTAGTTGCAAAGGGAAAG 60.202 45.833 0.00 0.00 0.00 2.62
2701 2928 7.386848 GCTTAAGTGTGTCTAACAGGTATGAAA 59.613 37.037 4.02 0.00 40.26 2.69
2737 2964 6.765989 TGGTTTCATAGTGCATATTAGACCAC 59.234 38.462 0.00 0.00 28.54 4.16
2749 2976 9.109393 TGCATATTAGACCACTAGAAATTGTTC 57.891 33.333 0.00 0.00 0.00 3.18
2765 2992 8.149647 AGAAATTGTTCACAGCCATTGAAAATA 58.850 29.630 0.00 0.00 34.78 1.40
2803 3030 5.715070 CAAACCTTTGTATCCGGCATTTTA 58.285 37.500 0.00 0.00 33.59 1.52
2897 3128 9.924650 TTGTTTGAACTAGGAGATTACTAGAAC 57.075 33.333 0.00 1.89 40.22 3.01
2898 3129 8.242053 TGTTTGAACTAGGAGATTACTAGAACG 58.758 37.037 0.00 0.00 40.22 3.95
2899 3130 6.939132 TGAACTAGGAGATTACTAGAACGG 57.061 41.667 0.00 0.00 40.22 4.44
2900 3131 6.656902 TGAACTAGGAGATTACTAGAACGGA 58.343 40.000 0.00 0.00 40.22 4.69
2901 3132 6.541641 TGAACTAGGAGATTACTAGAACGGAC 59.458 42.308 0.00 0.00 40.22 4.79
2902 3133 5.055812 ACTAGGAGATTACTAGAACGGACG 58.944 45.833 0.00 0.00 40.22 4.79
2903 3134 3.883669 AGGAGATTACTAGAACGGACGT 58.116 45.455 0.00 0.00 0.00 4.34
2904 3135 3.626670 AGGAGATTACTAGAACGGACGTG 59.373 47.826 0.00 0.00 0.00 4.49
2905 3136 3.624861 GGAGATTACTAGAACGGACGTGA 59.375 47.826 0.00 0.00 0.00 4.35
2906 3137 4.495514 GGAGATTACTAGAACGGACGTGAC 60.496 50.000 0.00 0.00 0.00 3.67
2907 3138 3.376546 AGATTACTAGAACGGACGTGACC 59.623 47.826 0.00 0.00 0.00 4.02
2914 3145 4.039357 CGGACGTGACCGCTCACT 62.039 66.667 9.10 0.00 46.20 3.41
2915 3146 2.430921 GGACGTGACCGCTCACTG 60.431 66.667 9.10 5.47 44.27 3.66
2916 3147 2.430921 GACGTGACCGCTCACTGG 60.431 66.667 9.10 0.00 44.27 4.00
2917 3148 4.664677 ACGTGACCGCTCACTGGC 62.665 66.667 9.10 0.00 44.27 4.85
2918 3149 4.662961 CGTGACCGCTCACTGGCA 62.663 66.667 9.10 0.00 44.27 4.92
2919 3150 2.740055 GTGACCGCTCACTGGCAG 60.740 66.667 14.16 14.16 43.26 4.85
2920 3151 4.687215 TGACCGCTCACTGGCAGC 62.687 66.667 15.89 0.00 0.00 5.25
2926 3157 2.749044 CTCACTGGCAGCGGCATT 60.749 61.111 15.89 0.03 43.71 3.56
2927 3158 3.047718 CTCACTGGCAGCGGCATTG 62.048 63.158 15.89 12.69 43.71 2.82
2928 3159 3.057548 CACTGGCAGCGGCATTGA 61.058 61.111 15.89 0.00 40.21 2.57
2929 3160 2.282391 ACTGGCAGCGGCATTGAA 60.282 55.556 15.89 0.00 43.71 2.69
2930 3161 2.338015 ACTGGCAGCGGCATTGAAG 61.338 57.895 15.89 2.41 43.71 3.02
2931 3162 3.695022 CTGGCAGCGGCATTGAAGC 62.695 63.158 11.88 0.00 43.71 3.86
2932 3163 4.842091 GGCAGCGGCATTGAAGCG 62.842 66.667 11.88 0.00 43.71 4.68
2933 3164 4.842091 GCAGCGGCATTGAAGCGG 62.842 66.667 3.18 0.00 40.72 5.52
2977 3208 3.197790 CACCGCTTCCCGATGCAG 61.198 66.667 0.00 0.00 40.02 4.41
2978 3209 4.473520 ACCGCTTCCCGATGCAGG 62.474 66.667 0.00 7.37 40.02 4.85
2981 3212 4.838152 GCTTCCCGATGCAGGCGA 62.838 66.667 12.70 0.00 0.00 5.54
2982 3213 2.109799 CTTCCCGATGCAGGCGAT 59.890 61.111 12.70 0.00 0.00 4.58
2983 3214 1.524621 CTTCCCGATGCAGGCGATT 60.525 57.895 12.70 0.00 0.00 3.34
2984 3215 0.249868 CTTCCCGATGCAGGCGATTA 60.250 55.000 12.70 0.00 0.00 1.75
2985 3216 0.531974 TTCCCGATGCAGGCGATTAC 60.532 55.000 12.70 0.00 0.00 1.89
2986 3217 1.069765 CCCGATGCAGGCGATTACT 59.930 57.895 12.70 0.00 0.00 2.24
2987 3218 1.224069 CCCGATGCAGGCGATTACTG 61.224 60.000 12.70 0.00 38.95 2.74
2995 3226 3.077705 GCGATTACTGCGCGTTCA 58.922 55.556 8.43 0.00 45.27 3.18
2996 3227 1.418367 GCGATTACTGCGCGTTCAA 59.582 52.632 8.43 0.00 45.27 2.69
2997 3228 0.179235 GCGATTACTGCGCGTTCAAA 60.179 50.000 8.43 0.00 45.27 2.69
2998 3229 1.529010 GCGATTACTGCGCGTTCAAAT 60.529 47.619 8.43 3.15 45.27 2.32
2999 3230 2.093638 CGATTACTGCGCGTTCAAATG 58.906 47.619 8.43 0.00 0.00 2.32
3000 3231 2.222707 CGATTACTGCGCGTTCAAATGA 60.223 45.455 8.43 0.00 0.00 2.57
3001 3232 2.587612 TTACTGCGCGTTCAAATGAC 57.412 45.000 8.43 0.00 0.00 3.06
3002 3233 1.503294 TACTGCGCGTTCAAATGACA 58.497 45.000 8.43 0.00 0.00 3.58
3003 3234 0.041312 ACTGCGCGTTCAAATGACAC 60.041 50.000 8.43 0.00 0.00 3.67
3004 3235 1.054348 CTGCGCGTTCAAATGACACG 61.054 55.000 8.43 11.26 34.30 4.49
3005 3236 1.792057 GCGCGTTCAAATGACACGG 60.792 57.895 8.43 9.30 32.95 4.94
3006 3237 1.792057 CGCGTTCAAATGACACGGC 60.792 57.895 0.00 9.35 32.95 5.68
3007 3238 1.792057 GCGTTCAAATGACACGGCG 60.792 57.895 4.80 4.80 32.95 6.46
3008 3239 1.792057 CGTTCAAATGACACGGCGC 60.792 57.895 6.90 0.00 0.00 6.53
3009 3240 1.442017 GTTCAAATGACACGGCGCC 60.442 57.895 19.07 19.07 0.00 6.53
3010 3241 2.622011 TTCAAATGACACGGCGCCC 61.622 57.895 23.46 7.25 0.00 6.13
3027 3258 4.456253 CGTCCGACCGTCCGTCTG 62.456 72.222 0.00 0.00 39.56 3.51
3028 3259 4.773117 GTCCGACCGTCCGTCTGC 62.773 72.222 0.00 0.00 39.56 4.26
3036 3267 4.357947 GTCCGTCTGCCGCTCACA 62.358 66.667 0.00 0.00 34.38 3.58
3037 3268 3.381983 TCCGTCTGCCGCTCACAT 61.382 61.111 0.00 0.00 34.38 3.21
3038 3269 2.434884 CCGTCTGCCGCTCACATT 60.435 61.111 0.00 0.00 34.38 2.71
3039 3270 2.743752 CCGTCTGCCGCTCACATTG 61.744 63.158 0.00 0.00 34.38 2.82
3040 3271 1.737735 CGTCTGCCGCTCACATTGA 60.738 57.895 0.00 0.00 0.00 2.57
3041 3272 1.086067 CGTCTGCCGCTCACATTGAT 61.086 55.000 0.00 0.00 0.00 2.57
3042 3273 0.376152 GTCTGCCGCTCACATTGATG 59.624 55.000 0.00 0.00 0.00 3.07
3043 3274 0.745486 TCTGCCGCTCACATTGATGG 60.745 55.000 0.00 0.00 0.00 3.51
3044 3275 2.332362 CTGCCGCTCACATTGATGGC 62.332 60.000 10.97 10.97 43.79 4.40
3045 3276 2.409055 GCCGCTCACATTGATGGCA 61.409 57.895 12.38 0.00 43.31 4.92
3046 3277 1.430632 CCGCTCACATTGATGGCAC 59.569 57.895 0.00 0.00 0.00 5.01
3047 3278 1.061411 CGCTCACATTGATGGCACG 59.939 57.895 0.00 0.00 0.00 5.34
3048 3279 1.226491 GCTCACATTGATGGCACGC 60.226 57.895 0.00 0.00 0.00 5.34
3049 3280 1.061411 CTCACATTGATGGCACGCG 59.939 57.895 3.53 3.53 0.00 6.01
3050 3281 2.100797 CACATTGATGGCACGCGG 59.899 61.111 12.47 0.00 0.00 6.46
3051 3282 2.359850 ACATTGATGGCACGCGGT 60.360 55.556 12.47 0.00 0.00 5.68
3052 3283 1.971167 ACATTGATGGCACGCGGTT 60.971 52.632 12.47 0.00 0.00 4.44
3053 3284 1.514657 CATTGATGGCACGCGGTTG 60.515 57.895 12.47 0.56 0.00 3.77
3054 3285 3.340953 ATTGATGGCACGCGGTTGC 62.341 57.895 12.47 12.69 42.18 4.17
3065 3296 3.423154 CGGTTGCCAAGGCGTCTC 61.423 66.667 6.60 0.00 45.51 3.36
3066 3297 3.056328 GGTTGCCAAGGCGTCTCC 61.056 66.667 6.60 2.63 45.51 3.71
3068 3299 2.035442 GTTGCCAAGGCGTCTCCTC 61.035 63.158 6.60 0.00 46.94 3.71
3069 3300 2.217038 TTGCCAAGGCGTCTCCTCT 61.217 57.895 6.60 0.00 46.94 3.69
3070 3301 0.902984 TTGCCAAGGCGTCTCCTCTA 60.903 55.000 6.60 0.00 46.94 2.43
3071 3302 1.323271 TGCCAAGGCGTCTCCTCTAG 61.323 60.000 6.60 0.00 46.94 2.43
3072 3303 1.439644 CCAAGGCGTCTCCTCTAGC 59.560 63.158 0.00 0.00 46.94 3.42
3073 3304 1.064946 CAAGGCGTCTCCTCTAGCG 59.935 63.158 0.00 0.00 46.94 4.26
3074 3305 2.776913 AAGGCGTCTCCTCTAGCGC 61.777 63.158 0.00 0.00 46.94 5.92
3076 3307 3.518998 GCGTCTCCTCTAGCGCCA 61.519 66.667 2.29 0.00 41.70 5.69
3077 3308 2.409651 CGTCTCCTCTAGCGCCAC 59.590 66.667 2.29 0.00 0.00 5.01
3078 3309 2.809010 GTCTCCTCTAGCGCCACC 59.191 66.667 2.29 0.00 0.00 4.61
3079 3310 2.442272 TCTCCTCTAGCGCCACCC 60.442 66.667 2.29 0.00 0.00 4.61
3080 3311 3.905678 CTCCTCTAGCGCCACCCG 61.906 72.222 2.29 0.00 40.75 5.28
3081 3312 4.753662 TCCTCTAGCGCCACCCGT 62.754 66.667 2.29 0.00 39.71 5.28
3082 3313 3.771160 CCTCTAGCGCCACCCGTT 61.771 66.667 2.29 0.00 39.71 4.44
3083 3314 2.509336 CTCTAGCGCCACCCGTTG 60.509 66.667 2.29 0.00 39.71 4.10
3084 3315 2.992689 TCTAGCGCCACCCGTTGA 60.993 61.111 2.29 0.00 39.71 3.18
3085 3316 2.186903 CTAGCGCCACCCGTTGAT 59.813 61.111 2.29 0.00 39.71 2.57
3086 3317 1.883084 CTAGCGCCACCCGTTGATC 60.883 63.158 2.29 0.00 39.71 2.92
3087 3318 3.379865 TAGCGCCACCCGTTGATCC 62.380 63.158 2.29 0.00 39.71 3.36
3089 3320 4.096003 CGCCACCCGTTGATCCCT 62.096 66.667 0.00 0.00 0.00 4.20
3090 3321 2.124695 GCCACCCGTTGATCCCTC 60.125 66.667 0.00 0.00 0.00 4.30
3091 3322 2.670148 GCCACCCGTTGATCCCTCT 61.670 63.158 0.00 0.00 0.00 3.69
3092 3323 1.221840 CCACCCGTTGATCCCTCTG 59.778 63.158 0.00 0.00 0.00 3.35
3093 3324 1.553690 CCACCCGTTGATCCCTCTGT 61.554 60.000 0.00 0.00 0.00 3.41
3094 3325 0.108138 CACCCGTTGATCCCTCTGTC 60.108 60.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.133823 TCATGTTTGGCTGTCACTGGT 60.134 47.619 0.00 0.00 0.00 4.00
1 2 1.608055 TCATGTTTGGCTGTCACTGG 58.392 50.000 0.00 0.00 0.00 4.00
2 3 5.571784 AATATCATGTTTGGCTGTCACTG 57.428 39.130 0.00 0.00 0.00 3.66
3 4 6.209192 TCAAAATATCATGTTTGGCTGTCACT 59.791 34.615 6.66 0.00 35.79 3.41
4 5 6.389091 TCAAAATATCATGTTTGGCTGTCAC 58.611 36.000 6.66 0.00 35.79 3.67
5 6 6.587206 TCAAAATATCATGTTTGGCTGTCA 57.413 33.333 6.66 0.00 35.79 3.58
6 7 7.223387 GGAATCAAAATATCATGTTTGGCTGTC 59.777 37.037 6.66 1.39 35.79 3.51
7 8 7.043565 GGAATCAAAATATCATGTTTGGCTGT 58.956 34.615 6.66 0.00 35.79 4.40
8 9 7.042950 TGGAATCAAAATATCATGTTTGGCTG 58.957 34.615 6.66 0.00 35.79 4.85
9 10 7.185318 TGGAATCAAAATATCATGTTTGGCT 57.815 32.000 6.66 0.00 35.79 4.75
10 11 6.018507 GCTGGAATCAAAATATCATGTTTGGC 60.019 38.462 6.66 0.00 35.79 4.52
11 12 7.042950 TGCTGGAATCAAAATATCATGTTTGG 58.957 34.615 6.66 0.00 35.79 3.28
12 13 8.657074 ATGCTGGAATCAAAATATCATGTTTG 57.343 30.769 0.00 0.00 36.30 2.93
14 15 9.923143 CATATGCTGGAATCAAAATATCATGTT 57.077 29.630 0.00 0.00 0.00 2.71
15 16 9.304335 TCATATGCTGGAATCAAAATATCATGT 57.696 29.630 0.00 0.00 0.00 3.21
27 28 5.645067 TGATCGGATTTCATATGCTGGAATC 59.355 40.000 0.00 5.37 45.71 2.52
28 29 5.563592 TGATCGGATTTCATATGCTGGAAT 58.436 37.500 0.00 0.00 35.64 3.01
29 30 4.971939 TGATCGGATTTCATATGCTGGAA 58.028 39.130 0.00 0.00 0.00 3.53
30 31 4.622260 TGATCGGATTTCATATGCTGGA 57.378 40.909 0.00 0.00 0.00 3.86
31 32 6.343703 TCTATGATCGGATTTCATATGCTGG 58.656 40.000 0.00 0.00 35.95 4.85
32 33 8.434733 AATCTATGATCGGATTTCATATGCTG 57.565 34.615 0.00 0.00 35.95 4.41
64 65 9.826574 ACCTGGAATTTCATTTCATTTCATATG 57.173 29.630 0.00 0.00 0.00 1.78
65 66 9.826574 CACCTGGAATTTCATTTCATTTCATAT 57.173 29.630 0.00 0.00 0.00 1.78
66 67 7.765360 GCACCTGGAATTTCATTTCATTTCATA 59.235 33.333 0.00 0.00 0.00 2.15
67 68 6.596497 GCACCTGGAATTTCATTTCATTTCAT 59.404 34.615 0.00 0.00 0.00 2.57
68 69 5.933463 GCACCTGGAATTTCATTTCATTTCA 59.067 36.000 0.00 0.00 0.00 2.69
69 70 5.352293 GGCACCTGGAATTTCATTTCATTTC 59.648 40.000 0.00 0.00 0.00 2.17
70 71 5.221884 TGGCACCTGGAATTTCATTTCATTT 60.222 36.000 0.00 0.00 0.00 2.32
71 72 4.286549 TGGCACCTGGAATTTCATTTCATT 59.713 37.500 0.00 0.00 0.00 2.57
72 73 3.839490 TGGCACCTGGAATTTCATTTCAT 59.161 39.130 0.00 0.00 0.00 2.57
73 74 3.237746 TGGCACCTGGAATTTCATTTCA 58.762 40.909 0.00 0.00 0.00 2.69
74 75 3.959535 TGGCACCTGGAATTTCATTTC 57.040 42.857 0.00 0.00 0.00 2.17
75 76 4.388485 GTTTGGCACCTGGAATTTCATTT 58.612 39.130 0.00 0.00 0.00 2.32
76 77 3.554752 CGTTTGGCACCTGGAATTTCATT 60.555 43.478 0.00 0.00 0.00 2.57
77 78 2.029110 CGTTTGGCACCTGGAATTTCAT 60.029 45.455 0.00 0.00 0.00 2.57
78 79 1.339610 CGTTTGGCACCTGGAATTTCA 59.660 47.619 0.00 0.00 0.00 2.69
79 80 1.611491 TCGTTTGGCACCTGGAATTTC 59.389 47.619 0.00 0.00 0.00 2.17
80 81 1.339929 GTCGTTTGGCACCTGGAATTT 59.660 47.619 0.00 0.00 0.00 1.82
81 82 0.958822 GTCGTTTGGCACCTGGAATT 59.041 50.000 0.00 0.00 0.00 2.17
82 83 0.893727 GGTCGTTTGGCACCTGGAAT 60.894 55.000 0.00 0.00 0.00 3.01
83 84 1.527380 GGTCGTTTGGCACCTGGAA 60.527 57.895 0.00 0.00 0.00 3.53
84 85 2.112297 GGTCGTTTGGCACCTGGA 59.888 61.111 0.00 0.00 0.00 3.86
85 86 2.113139 AGGTCGTTTGGCACCTGG 59.887 61.111 0.00 0.00 41.79 4.45
87 88 0.470766 TTACAGGTCGTTTGGCACCT 59.529 50.000 0.00 0.00 44.42 4.00
88 89 0.872388 CTTACAGGTCGTTTGGCACC 59.128 55.000 0.00 0.00 0.00 5.01
89 90 1.589803 ACTTACAGGTCGTTTGGCAC 58.410 50.000 0.00 0.00 0.00 5.01
90 91 2.335316 AACTTACAGGTCGTTTGGCA 57.665 45.000 0.00 0.00 0.00 4.92
91 92 5.049267 TCAATAAACTTACAGGTCGTTTGGC 60.049 40.000 8.92 0.00 33.40 4.52
92 93 6.204108 ACTCAATAAACTTACAGGTCGTTTGG 59.796 38.462 8.92 2.18 33.40 3.28
93 94 7.069569 CACTCAATAAACTTACAGGTCGTTTG 58.930 38.462 8.92 0.00 33.40 2.93
94 95 6.764560 ACACTCAATAAACTTACAGGTCGTTT 59.235 34.615 0.00 0.00 35.32 3.60
95 96 6.285990 ACACTCAATAAACTTACAGGTCGTT 58.714 36.000 0.00 0.00 0.00 3.85
96 97 5.850614 ACACTCAATAAACTTACAGGTCGT 58.149 37.500 0.00 0.00 0.00 4.34
97 98 6.780706 AACACTCAATAAACTTACAGGTCG 57.219 37.500 0.00 0.00 0.00 4.79
114 115 6.622245 GCCCTTTCTATCGGTTTTTAACACTC 60.622 42.308 0.00 0.00 0.00 3.51
119 120 6.094881 CAGATGCCCTTTCTATCGGTTTTTAA 59.905 38.462 0.00 0.00 0.00 1.52
121 122 4.399303 CAGATGCCCTTTCTATCGGTTTTT 59.601 41.667 0.00 0.00 0.00 1.94
125 126 1.417890 CCAGATGCCCTTTCTATCGGT 59.582 52.381 0.00 0.00 0.00 4.69
126 127 1.271054 CCCAGATGCCCTTTCTATCGG 60.271 57.143 0.00 0.00 0.00 4.18
127 128 1.694150 TCCCAGATGCCCTTTCTATCG 59.306 52.381 0.00 0.00 0.00 2.92
130 131 0.830648 CGTCCCAGATGCCCTTTCTA 59.169 55.000 0.00 0.00 0.00 2.10
131 132 0.909610 TCGTCCCAGATGCCCTTTCT 60.910 55.000 0.00 0.00 0.00 2.52
133 134 1.604378 CTCGTCCCAGATGCCCTTT 59.396 57.895 0.00 0.00 0.00 3.11
135 136 2.765807 CCTCGTCCCAGATGCCCT 60.766 66.667 0.00 0.00 0.00 5.19
136 137 4.554036 GCCTCGTCCCAGATGCCC 62.554 72.222 0.00 0.00 0.00 5.36
137 138 4.554036 GGCCTCGTCCCAGATGCC 62.554 72.222 0.00 0.00 42.87 4.40
164 165 2.124695 GGCTTAGGGTCGGCTTGG 60.125 66.667 0.00 0.00 0.00 3.61
185 186 1.959226 GTCGCGTGCTTTTGGAGGA 60.959 57.895 5.77 0.00 0.00 3.71
186 187 2.556287 GTCGCGTGCTTTTGGAGG 59.444 61.111 5.77 0.00 0.00 4.30
239 240 1.010795 ATTTTGGGGGAGAAGGGAGG 58.989 55.000 0.00 0.00 0.00 4.30
241 242 1.007607 GGATTTTGGGGGAGAAGGGA 58.992 55.000 0.00 0.00 0.00 4.20
242 243 0.709992 TGGATTTTGGGGGAGAAGGG 59.290 55.000 0.00 0.00 0.00 3.95
245 246 2.187100 GCAATGGATTTTGGGGGAGAA 58.813 47.619 0.00 0.00 0.00 2.87
246 247 1.622173 GGCAATGGATTTTGGGGGAGA 60.622 52.381 0.00 0.00 0.00 3.71
289 295 3.071874 TCTGGGAGCAAACTTGTATGG 57.928 47.619 0.00 0.00 0.00 2.74
290 296 4.326826 TCTTCTGGGAGCAAACTTGTATG 58.673 43.478 0.00 0.00 0.00 2.39
291 297 4.640771 TCTTCTGGGAGCAAACTTGTAT 57.359 40.909 0.00 0.00 0.00 2.29
292 298 4.565652 GGATCTTCTGGGAGCAAACTTGTA 60.566 45.833 0.00 0.00 0.00 2.41
293 299 3.416156 GATCTTCTGGGAGCAAACTTGT 58.584 45.455 0.00 0.00 0.00 3.16
294 300 2.751806 GGATCTTCTGGGAGCAAACTTG 59.248 50.000 0.00 0.00 0.00 3.16
295 301 2.616510 CGGATCTTCTGGGAGCAAACTT 60.617 50.000 0.00 0.00 0.00 2.66
296 302 1.065854 CGGATCTTCTGGGAGCAAACT 60.066 52.381 0.00 0.00 0.00 2.66
297 303 1.373570 CGGATCTTCTGGGAGCAAAC 58.626 55.000 0.00 0.00 0.00 2.93
912 918 0.593128 GCGAATTCCATTCCGGGATG 59.407 55.000 16.59 16.59 36.67 3.51
913 919 0.474184 AGCGAATTCCATTCCGGGAT 59.526 50.000 0.00 0.00 36.67 3.85
925 931 0.321653 AGCTCCGTTGGAAGCGAATT 60.322 50.000 0.00 0.00 33.40 2.17
937 943 0.180406 ACAACTTGGACAAGCTCCGT 59.820 50.000 11.73 1.98 43.03 4.69
1039 1045 2.109799 CGGAGATGGCTTGGCGAT 59.890 61.111 0.00 0.00 0.00 4.58
1089 1095 3.640407 AGCATGACCCAGTGGCGT 61.640 61.111 2.61 2.97 33.59 5.68
1107 1113 3.998672 TCGTCGGGTTGCAGGTCC 61.999 66.667 0.00 0.00 0.00 4.46
1127 1133 2.681666 CGTCATCGTCGTCGTTGC 59.318 61.111 8.02 3.76 36.90 4.17
1131 1137 3.006336 CGAGCGTCATCGTCGTCG 61.006 66.667 0.00 0.00 37.91 5.12
1137 1143 1.941734 GAAGAGGCGAGCGTCATCG 60.942 63.158 18.16 0.00 45.48 3.84
1138 1144 1.590259 GGAAGAGGCGAGCGTCATC 60.590 63.158 18.16 15.32 33.73 2.92
1139 1145 2.010582 GAGGAAGAGGCGAGCGTCAT 62.011 60.000 18.16 7.78 33.73 3.06
1140 1146 2.676822 AGGAAGAGGCGAGCGTCA 60.677 61.111 18.16 0.00 33.73 4.35
1141 1147 2.103340 GAGGAAGAGGCGAGCGTC 59.897 66.667 9.48 9.48 0.00 5.19
1142 1148 3.453679 GGAGGAAGAGGCGAGCGT 61.454 66.667 0.00 0.00 0.00 5.07
1143 1149 3.452786 TGGAGGAAGAGGCGAGCG 61.453 66.667 0.00 0.00 0.00 5.03
1228 1234 2.627737 GCACGAGGAGACCGTCAGT 61.628 63.158 0.40 0.00 38.29 3.41
1230 1236 3.733960 CGCACGAGGAGACCGTCA 61.734 66.667 0.40 0.00 38.29 4.35
1290 1296 2.744202 GTGGAGCATGTCACCTGTAAAG 59.256 50.000 0.00 0.00 0.00 1.85
1332 1338 4.839121 TCACCGAGGTATGCTTAAAATGT 58.161 39.130 0.00 0.00 0.00 2.71
1340 1346 0.325296 TCCCTTCACCGAGGTATGCT 60.325 55.000 0.00 0.00 34.88 3.79
1341 1347 0.105039 CTCCCTTCACCGAGGTATGC 59.895 60.000 0.00 0.00 34.88 3.14
1342 1348 0.753262 CCTCCCTTCACCGAGGTATG 59.247 60.000 0.00 0.00 40.77 2.39
1343 1349 1.049289 GCCTCCCTTCACCGAGGTAT 61.049 60.000 5.09 0.00 46.35 2.73
1369 1378 0.601046 CTCAGCAAGACCAGCGTTGA 60.601 55.000 0.00 0.00 37.01 3.18
1371 1380 0.322975 ATCTCAGCAAGACCAGCGTT 59.677 50.000 0.00 0.00 36.65 4.84
1402 1411 3.050275 GTTCGGGGCAGCACAGAC 61.050 66.667 0.00 0.00 0.00 3.51
1416 1425 5.405571 TGTCTCTGTAAAGAAATCGCTGTTC 59.594 40.000 0.00 0.00 0.00 3.18
1426 1435 3.511934 GCCTCCTCTGTCTCTGTAAAGAA 59.488 47.826 0.00 0.00 0.00 2.52
1435 1444 1.216710 CAACGGCCTCCTCTGTCTC 59.783 63.158 0.00 0.00 0.00 3.36
1456 1465 0.685097 ACAATGCTCACCAGGTACGT 59.315 50.000 0.00 0.00 0.00 3.57
1458 1467 4.324267 AGTTAACAATGCTCACCAGGTAC 58.676 43.478 8.61 0.00 0.00 3.34
1462 1471 4.323417 TGGTAGTTAACAATGCTCACCAG 58.677 43.478 8.61 0.00 31.44 4.00
1475 1484 1.888512 AGACGTCGCCTTGGTAGTTAA 59.111 47.619 10.46 0.00 0.00 2.01
1481 1490 0.606604 ACAATAGACGTCGCCTTGGT 59.393 50.000 22.70 11.70 0.00 3.67
1485 1494 1.153628 GGCACAATAGACGTCGCCT 60.154 57.895 18.95 2.12 36.58 5.52
1508 1517 1.999735 ACTTGAATACACATCCACGCG 59.000 47.619 3.53 3.53 0.00 6.01
1509 1518 3.426159 CCAACTTGAATACACATCCACGC 60.426 47.826 0.00 0.00 0.00 5.34
1566 1581 1.742768 CTCGGGTATGACCAGGAGC 59.257 63.158 0.00 0.00 41.02 4.70
1567 1582 0.397254 ACCTCGGGTATGACCAGGAG 60.397 60.000 8.60 8.44 41.02 3.69
1568 1583 0.686441 CACCTCGGGTATGACCAGGA 60.686 60.000 8.60 0.00 41.02 3.86
1569 1584 0.976073 ACACCTCGGGTATGACCAGG 60.976 60.000 0.00 0.00 41.02 4.45
1570 1585 0.460311 GACACCTCGGGTATGACCAG 59.540 60.000 0.00 0.00 41.02 4.00
1571 1586 1.317431 CGACACCTCGGGTATGACCA 61.317 60.000 0.00 0.00 41.02 4.02
1572 1587 1.436336 CGACACCTCGGGTATGACC 59.564 63.158 0.00 0.00 36.16 4.02
1574 1589 2.420568 GGCGACACCTCGGGTATGA 61.421 63.158 0.00 0.00 40.53 2.15
1575 1590 2.106332 GGCGACACCTCGGGTATG 59.894 66.667 0.00 0.00 40.53 2.39
1576 1591 3.524606 CGGCGACACCTCGGGTAT 61.525 66.667 0.00 0.00 40.53 2.73
1598 1778 4.041740 TCTTCTGCATATACGTCCACAC 57.958 45.455 0.00 0.00 0.00 3.82
1603 1783 3.821600 TCTCCCTCTTCTGCATATACGTC 59.178 47.826 0.00 0.00 0.00 4.34
1612 1792 3.324268 TCATCATCATCTCCCTCTTCTGC 59.676 47.826 0.00 0.00 0.00 4.26
1615 1795 5.741962 TCATCATCATCATCTCCCTCTTC 57.258 43.478 0.00 0.00 0.00 2.87
1624 1804 7.881751 TCCCTCTTTTGTATCATCATCATCATC 59.118 37.037 0.00 0.00 0.00 2.92
1625 1805 7.752638 TCCCTCTTTTGTATCATCATCATCAT 58.247 34.615 0.00 0.00 0.00 2.45
1626 1806 7.071572 TCTCCCTCTTTTGTATCATCATCATCA 59.928 37.037 0.00 0.00 0.00 3.07
1627 1807 7.448420 TCTCCCTCTTTTGTATCATCATCATC 58.552 38.462 0.00 0.00 0.00 2.92
1628 1808 7.384524 TCTCCCTCTTTTGTATCATCATCAT 57.615 36.000 0.00 0.00 0.00 2.45
1629 1809 6.813293 TCTCCCTCTTTTGTATCATCATCA 57.187 37.500 0.00 0.00 0.00 3.07
1658 1838 2.615912 AGATAAGAAGGCATTTCGCTGC 59.384 45.455 0.00 0.00 40.86 5.25
1680 1860 2.583441 TTCCCCAGCAGACTCCACG 61.583 63.158 0.00 0.00 0.00 4.94
1702 1882 2.177394 TCCACATAGCGAACAAGCAA 57.823 45.000 0.00 0.00 40.15 3.91
1707 1887 3.937814 AGTTTCATCCACATAGCGAACA 58.062 40.909 0.00 0.00 0.00 3.18
1711 1891 4.944962 TCAAAGTTTCATCCACATAGCG 57.055 40.909 0.00 0.00 0.00 4.26
1747 1927 0.928229 AACAACTTGTGCTCGACGTC 59.072 50.000 5.18 5.18 0.00 4.34
1797 1977 0.034896 TCTCTTGGCCGAGGAACAAC 59.965 55.000 20.46 0.00 0.00 3.32
1824 2004 1.134461 AGCTTAGCTGCATCCACAGAG 60.134 52.381 5.70 0.00 40.25 3.35
1830 2010 0.462759 ACGGAAGCTTAGCTGCATCC 60.463 55.000 14.90 13.37 44.54 3.51
1848 2028 1.795768 TGCAATCTCCGTCAACAGAC 58.204 50.000 0.00 0.00 0.00 3.51
1851 2031 5.017294 TGTATATGCAATCTCCGTCAACA 57.983 39.130 0.00 0.00 0.00 3.33
1892 2072 4.284234 TGTCTTCAGAATCTGACATGGACA 59.716 41.667 21.72 21.72 40.46 4.02
1894 2074 5.688814 ATGTCTTCAGAATCTGACATGGA 57.311 39.130 13.17 6.41 45.05 3.41
1915 2095 5.046087 TGTCTTCAGAATCTGACATGGACAT 60.046 40.000 21.72 0.00 40.46 3.06
1942 2122 6.094603 CACTTGTCTCCAGAATCTAAAATGGG 59.905 42.308 0.00 0.00 33.45 4.00
1945 2125 5.352569 CGCACTTGTCTCCAGAATCTAAAAT 59.647 40.000 0.00 0.00 0.00 1.82
1947 2127 4.021456 TCGCACTTGTCTCCAGAATCTAAA 60.021 41.667 0.00 0.00 0.00 1.85
1949 2129 3.089284 TCGCACTTGTCTCCAGAATCTA 58.911 45.455 0.00 0.00 0.00 1.98
1957 2137 0.792640 CACATGTCGCACTTGTCTCC 59.207 55.000 0.00 0.00 34.74 3.71
1966 2146 1.656594 GTTATACACGCACATGTCGCA 59.343 47.619 16.80 5.75 33.85 5.10
1967 2147 1.005347 GGTTATACACGCACATGTCGC 60.005 52.381 14.78 12.16 33.85 5.19
1968 2148 2.536365 AGGTTATACACGCACATGTCG 58.464 47.619 13.71 13.71 33.85 4.35
1969 2149 5.345702 TCTTAGGTTATACACGCACATGTC 58.654 41.667 0.00 0.00 33.85 3.06
1970 2150 5.333299 TCTTAGGTTATACACGCACATGT 57.667 39.130 0.00 0.00 36.56 3.21
1971 2151 4.745125 CCTCTTAGGTTATACACGCACATG 59.255 45.833 0.00 0.00 0.00 3.21
1972 2152 4.945246 CCTCTTAGGTTATACACGCACAT 58.055 43.478 0.00 0.00 0.00 3.21
1973 2153 4.380841 CCTCTTAGGTTATACACGCACA 57.619 45.455 0.00 0.00 0.00 4.57
1995 2175 6.269769 TGCTGTAGATAATATCCACCATGTCA 59.730 38.462 0.00 0.00 0.00 3.58
1999 2179 6.501805 TCCTTGCTGTAGATAATATCCACCAT 59.498 38.462 0.00 0.00 0.00 3.55
2007 2187 7.108841 ACGAAAGTCCTTGCTGTAGATAATA 57.891 36.000 0.00 0.00 44.19 0.98
2029 2209 0.389948 AGGCTAAAAGGTCGAGCACG 60.390 55.000 18.15 0.00 37.98 5.34
2052 2232 2.037251 GCAGTACCACAAGAGAACCTGA 59.963 50.000 0.00 0.00 0.00 3.86
2062 2242 0.973632 AGGACATCGCAGTACCACAA 59.026 50.000 0.00 0.00 0.00 3.33
2065 2245 0.535335 GGAAGGACATCGCAGTACCA 59.465 55.000 0.00 0.00 0.00 3.25
2073 2253 4.513442 TCTACAATTTGGGAAGGACATCG 58.487 43.478 0.78 0.00 0.00 3.84
2094 2274 6.918022 CAGAACAGGTTTATTTTCACAACCTC 59.082 38.462 0.00 0.00 46.12 3.85
2098 2278 5.452636 GGCCAGAACAGGTTTATTTTCACAA 60.453 40.000 0.00 0.00 0.00 3.33
2116 2296 1.297689 CACTAGCAGCAAGGCCAGA 59.702 57.895 5.01 0.00 0.00 3.86
2139 2319 4.457834 AATCTACTACTCACAGTGGCAC 57.542 45.455 10.29 10.29 28.76 5.01
2175 2355 7.001674 AGTACATAAAACTGTTCCAACATGGA 58.998 34.615 0.00 0.00 46.61 3.41
2221 2401 6.564328 TCAGTCGAGCGATGCAATATATAAT 58.436 36.000 0.00 0.00 0.00 1.28
2226 2406 2.800881 TCAGTCGAGCGATGCAATAT 57.199 45.000 0.00 0.00 0.00 1.28
2261 2444 8.840321 CACGGACTGAAATAAGGATTAATGAAT 58.160 33.333 0.00 0.00 32.17 2.57
2270 2453 4.884668 AGAACACGGACTGAAATAAGGA 57.115 40.909 0.00 0.00 0.00 3.36
2278 2461 3.887110 TCAGAACTAAGAACACGGACTGA 59.113 43.478 0.00 0.00 0.00 3.41
2291 2474 6.588204 ACAACACACCTATTGTCAGAACTAA 58.412 36.000 0.00 0.00 35.67 2.24
2292 2475 6.169557 ACAACACACCTATTGTCAGAACTA 57.830 37.500 0.00 0.00 35.67 2.24
2293 2476 5.036117 ACAACACACCTATTGTCAGAACT 57.964 39.130 0.00 0.00 35.67 3.01
2294 2477 5.989777 AGTACAACACACCTATTGTCAGAAC 59.010 40.000 0.00 0.00 39.67 3.01
2295 2478 6.169557 AGTACAACACACCTATTGTCAGAA 57.830 37.500 0.00 0.00 39.67 3.02
2296 2479 5.303333 TGAGTACAACACACCTATTGTCAGA 59.697 40.000 0.00 0.00 39.67 3.27
2297 2480 5.538118 TGAGTACAACACACCTATTGTCAG 58.462 41.667 0.00 0.00 39.67 3.51
2305 2488 4.530553 TCATACCATGAGTACAACACACCT 59.469 41.667 0.00 0.00 33.59 4.00
2322 2505 1.359848 CAGACACGCAAGGTCATACC 58.640 55.000 0.00 0.00 46.39 2.73
2327 2510 1.145803 GTAACCAGACACGCAAGGTC 58.854 55.000 0.00 0.00 46.39 3.85
2334 2517 6.721571 ACATTAAAGATGTAACCAGACACG 57.278 37.500 0.00 0.00 30.52 4.49
2362 2545 7.309499 CCAGCAGTAAGTTCCTAGATATTCGAT 60.309 40.741 0.00 0.00 0.00 3.59
2380 2577 2.237143 CAGATTTCCTCCACCAGCAGTA 59.763 50.000 0.00 0.00 0.00 2.74
2384 2581 0.034670 AGCAGATTTCCTCCACCAGC 60.035 55.000 0.00 0.00 0.00 4.85
2385 2582 2.503895 AAGCAGATTTCCTCCACCAG 57.496 50.000 0.00 0.00 0.00 4.00
2386 2583 3.889815 CATAAGCAGATTTCCTCCACCA 58.110 45.455 0.00 0.00 0.00 4.17
2387 2584 2.620585 GCATAAGCAGATTTCCTCCACC 59.379 50.000 0.00 0.00 41.58 4.61
2388 2585 3.978718 GCATAAGCAGATTTCCTCCAC 57.021 47.619 0.00 0.00 41.58 4.02
2418 2639 6.282167 TCGAACATGGTACTACTTGTTTTGA 58.718 36.000 0.00 0.52 38.40 2.69
2436 2657 9.816354 TTCATATCATTCAGATTAACTCGAACA 57.184 29.630 0.00 0.00 38.19 3.18
2448 2670 8.812513 ATTGAAACAGGTTCATATCATTCAGA 57.187 30.769 0.47 0.00 45.71 3.27
2459 2681 7.502226 ACTGTTCTTATGATTGAAACAGGTTCA 59.498 33.333 15.53 0.00 44.74 3.18
2514 2738 7.598493 GCCTGAAAAACTTCACTTAATAATGCA 59.402 33.333 0.00 0.00 0.00 3.96
2522 2746 9.959721 ATCTTATAGCCTGAAAAACTTCACTTA 57.040 29.630 0.00 0.00 0.00 2.24
2526 2750 7.336931 GTCCATCTTATAGCCTGAAAAACTTCA 59.663 37.037 0.00 0.00 0.00 3.02
2534 2758 3.069586 CGGTGTCCATCTTATAGCCTGAA 59.930 47.826 0.00 0.00 0.00 3.02
2543 2767 1.276989 GAACCACCGGTGTCCATCTTA 59.723 52.381 31.80 0.00 35.34 2.10
2548 2772 3.154584 GACGAACCACCGGTGTCCA 62.155 63.158 31.80 0.00 35.34 4.02
2550 2774 2.356673 GGACGAACCACCGGTGTC 60.357 66.667 31.80 22.39 35.34 3.67
2551 2775 3.155861 TGGACGAACCACCGGTGT 61.156 61.111 31.80 15.97 44.64 4.16
2564 2791 4.187694 CAATCTTTAGAGCTCCAGTGGAC 58.812 47.826 8.12 5.70 0.00 4.02
2570 2797 1.212935 GCCCCAATCTTTAGAGCTCCA 59.787 52.381 10.93 0.00 0.00 3.86
2603 2830 1.986882 CAACAGGCAGGAAAAGAGGT 58.013 50.000 0.00 0.00 0.00 3.85
2635 2862 0.981277 TAGCCACTGCCCTAGTTCCC 60.981 60.000 0.00 0.00 37.60 3.97
2653 2880 4.258543 CCTTTCCCTTTGCAACTACGATA 58.741 43.478 0.00 0.00 0.00 2.92
2654 2881 3.081804 CCTTTCCCTTTGCAACTACGAT 58.918 45.455 0.00 0.00 0.00 3.73
2660 2887 3.069586 ACTTAAGCCTTTCCCTTTGCAAC 59.930 43.478 0.00 0.00 0.00 4.17
2673 2900 3.646637 ACCTGTTAGACACACTTAAGCCT 59.353 43.478 1.29 0.00 0.00 4.58
2674 2901 4.004196 ACCTGTTAGACACACTTAAGCC 57.996 45.455 1.29 0.00 0.00 4.35
2707 2934 8.046708 TCTAATATGCACTATGAAACCACAAGT 58.953 33.333 0.00 0.00 0.00 3.16
2711 2938 6.765989 TGGTCTAATATGCACTATGAAACCAC 59.234 38.462 0.00 0.00 0.00 4.16
2737 2964 6.258230 TCAATGGCTGTGAACAATTTCTAG 57.742 37.500 0.00 0.00 32.36 2.43
2749 2976 8.605746 CCAAATGTAATATTTTCAATGGCTGTG 58.394 33.333 0.00 0.00 0.00 3.66
2751 2978 7.769970 ACCCAAATGTAATATTTTCAATGGCTG 59.230 33.333 15.19 9.91 0.00 4.85
2891 3122 4.759564 CGGTCACGTCCGTTCTAG 57.240 61.111 7.49 0.00 44.77 2.43
2903 3134 4.687215 GCTGCCAGTGAGCGGTCA 62.687 66.667 14.39 14.39 41.44 4.02
2909 3140 2.749044 AATGCCGCTGCCAGTGAG 60.749 61.111 6.88 0.00 36.33 3.51
2910 3141 3.057548 CAATGCCGCTGCCAGTGA 61.058 61.111 6.88 0.00 36.33 3.41
2911 3142 2.537792 CTTCAATGCCGCTGCCAGTG 62.538 60.000 0.00 0.00 36.33 3.66
2912 3143 2.282391 TTCAATGCCGCTGCCAGT 60.282 55.556 0.00 0.00 36.33 4.00
2913 3144 2.488355 CTTCAATGCCGCTGCCAG 59.512 61.111 0.00 0.00 36.33 4.85
2914 3145 3.751246 GCTTCAATGCCGCTGCCA 61.751 61.111 0.00 0.00 36.33 4.92
2915 3146 4.842091 CGCTTCAATGCCGCTGCC 62.842 66.667 0.00 0.00 36.33 4.85
2916 3147 4.842091 CCGCTTCAATGCCGCTGC 62.842 66.667 0.00 0.00 38.26 5.25
2917 3148 4.842091 GCCGCTTCAATGCCGCTG 62.842 66.667 0.00 0.00 35.07 5.18
2920 3151 4.817063 CGTGCCGCTTCAATGCCG 62.817 66.667 0.00 0.00 0.00 5.69
2960 3191 3.197790 CTGCATCGGGAAGCGGTG 61.198 66.667 0.00 0.00 32.54 4.94
2961 3192 4.473520 CCTGCATCGGGAAGCGGT 62.474 66.667 4.28 0.00 35.37 5.68
2964 3195 4.838152 TCGCCTGCATCGGGAAGC 62.838 66.667 8.36 0.00 29.82 3.86
2965 3196 0.249868 TAATCGCCTGCATCGGGAAG 60.250 55.000 8.36 0.00 29.82 3.46
2966 3197 0.531974 GTAATCGCCTGCATCGGGAA 60.532 55.000 8.36 0.00 29.82 3.97
2967 3198 1.069090 GTAATCGCCTGCATCGGGA 59.931 57.895 8.36 6.00 29.82 5.14
2968 3199 1.069765 AGTAATCGCCTGCATCGGG 59.930 57.895 8.36 0.00 0.00 5.14
2969 3200 2.229039 CAGTAATCGCCTGCATCGG 58.771 57.895 8.36 0.00 0.00 4.18
2979 3210 2.093638 CATTTGAACGCGCAGTAATCG 58.906 47.619 5.73 0.00 0.00 3.34
2980 3211 3.091417 GTCATTTGAACGCGCAGTAATC 58.909 45.455 5.73 2.81 0.00 1.75
2981 3212 2.482336 TGTCATTTGAACGCGCAGTAAT 59.518 40.909 5.73 0.00 0.00 1.89
2982 3213 1.867865 TGTCATTTGAACGCGCAGTAA 59.132 42.857 5.73 0.00 0.00 2.24
2983 3214 1.193650 GTGTCATTTGAACGCGCAGTA 59.806 47.619 5.73 0.00 0.00 2.74
2984 3215 0.041312 GTGTCATTTGAACGCGCAGT 60.041 50.000 5.73 3.19 0.00 4.40
2985 3216 1.054348 CGTGTCATTTGAACGCGCAG 61.054 55.000 5.73 2.42 0.00 5.18
2986 3217 1.083080 CGTGTCATTTGAACGCGCA 60.083 52.632 5.73 0.00 0.00 6.09
2987 3218 1.792057 CCGTGTCATTTGAACGCGC 60.792 57.895 5.73 0.00 36.02 6.86
2988 3219 1.792057 GCCGTGTCATTTGAACGCG 60.792 57.895 3.53 3.53 36.02 6.01
2989 3220 1.792057 CGCCGTGTCATTTGAACGC 60.792 57.895 8.69 0.00 36.02 4.84
2990 3221 1.792057 GCGCCGTGTCATTTGAACG 60.792 57.895 0.00 7.73 37.07 3.95
2991 3222 1.442017 GGCGCCGTGTCATTTGAAC 60.442 57.895 12.58 0.00 0.00 3.18
2992 3223 2.622011 GGGCGCCGTGTCATTTGAA 61.622 57.895 22.54 0.00 0.00 2.69
2993 3224 3.053291 GGGCGCCGTGTCATTTGA 61.053 61.111 22.54 0.00 0.00 2.69
2994 3225 4.459331 CGGGCGCCGTGTCATTTG 62.459 66.667 22.54 0.00 42.73 2.32
3019 3250 3.649277 ATGTGAGCGGCAGACGGAC 62.649 63.158 1.45 0.00 44.51 4.79
3020 3251 2.942796 AATGTGAGCGGCAGACGGA 61.943 57.895 1.45 0.00 44.51 4.69
3021 3252 2.434884 AATGTGAGCGGCAGACGG 60.435 61.111 1.45 0.00 44.51 4.79
3023 3254 0.376152 CATCAATGTGAGCGGCAGAC 59.624 55.000 1.45 0.00 0.00 3.51
3024 3255 0.745486 CCATCAATGTGAGCGGCAGA 60.745 55.000 1.45 0.00 0.00 4.26
3025 3256 1.725665 CCATCAATGTGAGCGGCAG 59.274 57.895 1.45 0.00 0.00 4.85
3026 3257 2.409055 GCCATCAATGTGAGCGGCA 61.409 57.895 13.76 0.00 44.10 5.69
3027 3258 2.409055 TGCCATCAATGTGAGCGGC 61.409 57.895 12.37 12.37 44.61 6.53
3028 3259 1.430632 GTGCCATCAATGTGAGCGG 59.569 57.895 0.00 0.00 0.00 5.52
3029 3260 1.061411 CGTGCCATCAATGTGAGCG 59.939 57.895 0.00 0.00 0.00 5.03
3030 3261 1.226491 GCGTGCCATCAATGTGAGC 60.226 57.895 0.00 0.00 0.00 4.26
3031 3262 1.061411 CGCGTGCCATCAATGTGAG 59.939 57.895 0.00 0.00 0.00 3.51
3032 3263 2.397754 CCGCGTGCCATCAATGTGA 61.398 57.895 4.92 0.00 0.00 3.58
3033 3264 2.100797 CCGCGTGCCATCAATGTG 59.899 61.111 4.92 0.00 0.00 3.21
3034 3265 1.971167 AACCGCGTGCCATCAATGT 60.971 52.632 4.92 0.00 0.00 2.71
3035 3266 1.514657 CAACCGCGTGCCATCAATG 60.515 57.895 4.92 0.00 0.00 2.82
3036 3267 2.876955 CAACCGCGTGCCATCAAT 59.123 55.556 4.92 0.00 0.00 2.57
3037 3268 4.036804 GCAACCGCGTGCCATCAA 62.037 61.111 10.36 0.00 38.66 2.57
3048 3279 3.423154 GAGACGCCTTGGCAACCG 61.423 66.667 12.45 12.37 0.00 4.44
3049 3280 3.056328 GGAGACGCCTTGGCAACC 61.056 66.667 12.45 5.26 0.00 3.77
3059 3290 3.518998 TGGCGCTAGAGGAGACGC 61.519 66.667 7.64 0.00 44.67 5.19
3060 3291 2.409651 GTGGCGCTAGAGGAGACG 59.590 66.667 7.64 0.00 0.00 4.18
3061 3292 2.787567 GGGTGGCGCTAGAGGAGAC 61.788 68.421 7.64 0.00 0.00 3.36
3062 3293 2.442272 GGGTGGCGCTAGAGGAGA 60.442 66.667 7.64 0.00 0.00 3.71
3063 3294 3.905678 CGGGTGGCGCTAGAGGAG 61.906 72.222 7.64 0.00 0.00 3.69
3064 3295 4.753662 ACGGGTGGCGCTAGAGGA 62.754 66.667 7.64 0.00 0.00 3.71
3065 3296 3.771160 AACGGGTGGCGCTAGAGG 61.771 66.667 7.64 0.00 0.00 3.69
3066 3297 2.298158 ATCAACGGGTGGCGCTAGAG 62.298 60.000 7.64 0.00 0.00 2.43
3067 3298 2.292794 GATCAACGGGTGGCGCTAGA 62.293 60.000 7.64 0.00 0.00 2.43
3068 3299 1.883084 GATCAACGGGTGGCGCTAG 60.883 63.158 7.64 0.00 0.00 3.42
3069 3300 2.185867 GATCAACGGGTGGCGCTA 59.814 61.111 7.64 0.00 0.00 4.26
3070 3301 4.778143 GGATCAACGGGTGGCGCT 62.778 66.667 7.64 0.00 0.00 5.92
3072 3303 4.096003 AGGGATCAACGGGTGGCG 62.096 66.667 0.00 0.00 0.00 5.69
3073 3304 2.124695 GAGGGATCAACGGGTGGC 60.125 66.667 0.00 0.00 0.00 5.01
3074 3305 1.221840 CAGAGGGATCAACGGGTGG 59.778 63.158 0.00 0.00 0.00 4.61
3075 3306 0.108138 GACAGAGGGATCAACGGGTG 60.108 60.000 0.00 0.00 0.00 4.61
3076 3307 2.287829 GACAGAGGGATCAACGGGT 58.712 57.895 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.