>input_sequence_60864
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---------------------------------------------ATGGACATGAGGGCCGTCTGCTCAACCTGGCGCTC
TGCCATCGCCAAGCCATCTCCGCTCGCCGCGGTAGCTGGCCTCCGTTTCCGCCCACGCCACTGGGTCATGCTGGACCTGC
AACCCGACGACCGCAACGACGACGATGACGCTCGCCTCTTCCTCCACGTCCCCACCGGGCGCATCCGCCGCCTGCACCTC
CCGGTGCTCCGCGACAACTTCGTCGCCGGTGCTACTGACGGTCTCCTCGTGCGCGGGGACATGTATCCACCGCACTTGGC
TCGTGTCCTCAACCCCTTTACAGGTGACATGCTCCACTTCCCCGCGGCGTTACCTCGACATTTTAAGCATACCTCGGTGA
---AGGGAGGCTCTCATTCAACGCTGGTCTTGCTGAGATGGGGCTCGGTGGTCTGTGCTGCCCCGAACAGCGATTTCTTT
ACAGAGACAGAGGAGGCCGTTGAAACGTACCTGGTGAGCATTGTTAACTACCAAGGCGACGTCTATTGTGCCGATGCGCG
TGGATGTGTATTCAAGTTGG------TCGCACCAGCAGCAGACCAGTGTGATGATGATGAGCTCCTGGTCATACCCGAGG
TGT-----------------------------------------------------------------------------
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--------CGCCGCCGGGTGTGGACGTATATGCAGAAGAGGGAGATGATGATGATGATACAAAAGAGGGAGATGATGGCA
GCGAAATGCCTTCTTATCTCGTGGAGTCTGCTGGGGAACTGTTGCTTGTTCGCTATGTGGATGAAACTTTGAAAGTTTTC
AGAGTCGACGTCGAGCACAAGTTGTTGGAAGAGGTCAAGAGCCTCGGCGGCCGCACGTTGTTCCTCGGCCAAGAGAGGTG
TGTCTCTGTGGATGCAGCTAAGCTTCCGTCTGTTGACGGAGATTGCATATACATGTTAGATTTTGAAAACGTGTCCATGT
CAGATTCTGAAGACATGTCCATGTCAGATTCTGAAGACATGCCCATTTTAGATTCTGGAGACAAGTGCGACATGTGCGTG
TATAACCTAAGAGGTGACATGGTGGATATTATCTACAGCAAGGACTTTCGTGCTCGACCTTTTAGCCTTGTTCAGGTTCT
CTTGTGGTACTGCGATGTCCTTCCCAAATTGTAG----------------------------------------------
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>chr7D_1_TraesCS7D01G325400
ACCAGTGACAGCCAAACATGATATTTTGATTCCAGCATATGAAATCCGATCATAGATTTCATTTCATATGAAATGAAATG
AAATTCCAGGTGCCAAACGACCTGTAAGTTTATTGAGTGTTAAAAACCGATAGAAAGGGCATCTGGGACGAGGCCCAAGC
CCAACCAAGCCGACCCTAAGCCATTTCCTCCAAAAGCACGCGACGCGAGCTTCCTTCTTCCCCCAAATCCTCCCGGCCGC
CTCCCTTCTCCCCCAAAATCCA-----TTGCCGCCCTTCTCCAGCTCCATTCCCCCATACAAGTTTGCTCCCAGAAGATC
CGCCGCCCAGCACCGATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCGGTGGCCTATCCATCATCCCGGAATGGAATTCGCTTCCAACGGAGCTTGTCCAAGTT
GTCGCCGACCGCGTCCTCTCGACCACCGGCGGCGTCGACGCGTACATGGACATGAGGGCCGTCTGCTCAACCTGGCGCTC
TGCCATCGCCAAGCCATCTCCGCTCGCCGCGGTAGCTGGCCTCCGTTTCCGCCCACGCCACTGGGTCATGCTGGACCTGC
AACCCGACGACCGCAACGACGACGATGACGCTCGCCTCTTCCTCCACGTCCCCACCGGGCGCATCCGCCGCCTGCACCTC
CCGGTGCTCCGCGACAACTTCGTCGCCGGTGCTACTGACGGTCTCCTCGTGCGCGGGGACATGTATCCACCGCACTTGGC
TCGTGTCCTCAACCCCTTTACAGGTGACATGCTCCACTTCCCCGCGGCGTTACCTCGACATTTTAAGCATACCTCGGTGA
---AGGGAGGCTCTCATTCAACGCTGGTCTTGCTGAGATGGGGCTCGGTGGTCTGTGCTGCCCCGAACAGCGATTTCTTT
ACAGAGACAGAGGAGGCCGTTGAAACGTACCTGGTGAGCATTGTTAACTACCAAGGCGACGTCTATTGTGCCGATGCGCG
TGGATGTGTATTCAAGTTGG------TCGCACCAGCAGCAGACCAGTGTGATGATGATGAGCTCCTGGTCATACCCGAGG
TGT-----------------------------------------------------------------------------
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--------CGCCGCCGGGTGTGGACGTATATGCAGAAGAGGGAGATGATGATGATGATACAAAAGAGGGAGATGATGGCA
GCGAAATGCCTTCTTATCTCGTGGAGTCTGCTGGGGAACTGTTGCTTGTTCGCTATGTGGATGAAACTTTGAAAGTTTTC
AGAGTCGACGTCGAGCACAAGTTGTTGGAAGAGGTCAAGAGCCTCGGCGGCCGCACGTTGTTCCTCGGCCAAGAGAGGTG
TGTCTCTGTGGATGCAGCTAAGCTTCCGTCTGTTGACGGAGATTGCATATACATGTTAGATTTTGAAAACGTGTCCATGT
CAGATTCTGAAGACATGTCCATGTCAGATTCTGAAGACATGCCCATTTTAGATTCTGGAGACAAGTGCGACATGTGCGTG
TATAACCTAAGAGGTGACATGGTGGATATTATCTACAGCAAGGACTTTCGTGCTCGACCTTTTAGCCTTGTTCAGGTTCT
CTTGTGGTACTGCGATGTCCTTCCCAAATTGTAGAGGTTGTGAAAATAAACCTGTTCTGGCCTTGCTGCTAGTGCCTCGT
GCCACTGTGAGTAGTAGATTAAGTAGTAGGGTTTTCCATGTTGGAACAGTTTTATGTACTATTTTGATTATCTCCTTCAT
ATTATATA---TTGCATCGCTCGACTGATGCTATTTATCAGCTATTCATTAATCCTTATTTCAGTCCGTGTTCTTAGTTC
TGACAATAGGTGTGTTGTACTCATGGTATGACCTTGCGTGTCTGGTTACATCTTTAATGTACCCATCGAAT---------
-----ATCTAGGAACTTACTGCTGGTGGAGGA------------------------AATCTGCTTATGCAGTATTTCATC
AAAACAAGTAGTACCATGTT-CGAGTTAATCTGAATGATATGAACCT-GTTTCAATCATAAGAACAGTAAACAGTTTTAG
GCTC-AATTGAAGTGACTGCATTATTAAGTGAAGTTTTTCAGGCTATAAGATGGACACC---GGTGGTTCGTCCACTGGA
GCTCTAAAGATTGGGGCATGCGTGCTGCTACCTCTTTTCCTGCCTGTTGCTTTGTTCTTATGGGAACTAGGGCAGTGGCT
ATCGTAGTTGCAAAGGGAAAGGCTTAAGTGTGTCTAACAGGTATGAAAAATAAACTTGTGGTTTCATAGTGCATATTAGA
CCACTAGAAATTGTTCACAGCCATTGAAAATATTACATTTGGGTTGCAAACCTTTGTATCCGGCATTTTAAAATTTAATT
CAGAATTGATCCATATAATTTAATGAAATCTGGATTTTTTTTT---ACCAAATTTGAATTTTGTTTGAA-CTAGGAGATT
ACTAGAACGGACGTGACCGCTCACTGGCAGCGGCATTGAAGCGGCACGCAGCCCGAGAGAGCGCCGCCCGCACCGCTTCC
CGATGCAGGCGATTACTGCGCGTTCAAATGACACGGCGCCCGTCCGACCGTCCGTCTGCCGCTCACATTGATGGCACGCG
GTTGCCAAGGCGTCTCCTCTAGCGCCACCCGTTGATCCCTCTGTC
>chr3D_102
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---------------------CTGTAAGTTTATTCAGTGATGAAACTAGAGGGCAGTCGGA-----GACGAGGCCCAAGC
CCAAGCAAGCCGACCCTAAGCCATTCGCTC-----GCACGCGACGCGAGCTTCCTTCTTCCCCAAAATCCTCCGTCCCGG
CCGCCGCCTCCCCCAAAATCCAATCCTTTGCCGCCCTTCTCCAGCTCCATTCCC---------TTTGCTCCCAGCAGATC
CGCCACCCAGCGCGAGGACCCTGGGCGTGGCCATGAAGATGAAGGAGGGGGGCGACTGGAGCAGCGAGTGGCGGCGGCCG
CACGGCAGCGCCAAGTTG--------------------------------------------------------------
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-----------------------GGTGGCCTATCCATGGTCCCTGAATGGGATTCGCTTCCACCGGAGCTTGTCCAAGCG
GTCGCCGACCGCGTCCTCTCCGCCACCGGCGGCGTCGACGCGTACATGGACATGAGGGCCGTCTGCTCAACCTGGCGCTC
TGCCGTCGCCAAGTCATCTCCTTTCGCCGCGGTCGCCGGCCTCCGTTTCCGCCCGCGCCACTGGGTCATGCTCGACCTGC
AACCCGACGACCTCAATGACGAG------GCTCGCCTCTTCCTCCACGTCCCCACCGGCCGCTTCCGCCGCCTGCACCTC
CCGGCGCTCCGCGACAACCTCGTCGCCGGTGCTGCCGACGGTCTCCTCGTGCTCGCGGACATGTATCCGCCGCACTTGGC
TCGTGTCCTCAACCCATTTACAGGTGACATGCTCCACTTCCCCGCGGCGTTACCTCGGCATTTTACCTTTACCTCGGTGA
TGAAGGGAGGCTCTCATCCGACGCTGGTCTTGCTGAGATGGGGCTCGGTGTTCTGTGCTGCCCCAAACAGCGATCTCTTT
ACACAGACAGAGGAGGCCGTTGAATCCTACTTGGTGAGCATTGCTAACTTCCAGGGCGACGTCTATTGTGCCGATGGCCG
TGGATGTGTATTCAAGTTGGTCGCACTCGCACCAGCAGCAGACCAGTGTGATGATGATGATGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT
GATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGA
TGCCGCGGCGCCGCCGGATGTGCACGTATATACACAAGAGGGA------GATGATGATACAAAAGAGGGAGATGATCACA
GCGAAATGCCTTCTTATCTTGTGGAGTCTGCTGGGGAACTGCTGCTCGTTTGCTCCGTTGATCAAACTTTGAAAGTTTTC
AGAGTCAACGTCGAGCACAAGTTGTTGGAGGAGGTCAAGAGCCTCGGCGGCCGCACCTTGTTCCTCGGCCAAGAGAGGTG
TGTGTCTGTCGATGCAGCGAAGCTTCCTTCCGTTGACGGAGATTGCATATACATGTTAGATTTTGAAAACGCGCCCATGT
CAGATTCTGAAAGCGTGTCCATGTCAGATTCTGAAGACATGTCCGTGTCAGATTCTAGAGACAAGATA------TGCGTG
TATAACCTAAGAGGCGACGTGGTGGACATTATCTCCAGCAAGGACTTTTGTGCTCGACCTTTCAGCCTTGTCCAGGTTCT
CCTGCGGTACTGTGATGTCCTTCCCAAATTGTAAAGGGTGTGAAAATAAACCTGTGCTGGCCTTGCTGCTACTGCCTCAT
GCCACTGTGAGTAGTAGATTAAGTAGTAGGTTTTCCCATATTGGAACAGTTTTATGTACTATTTTGCTTATCTCCTTCAT
CTTATGTATTCTTGCATCGCTCGACTGATGTTGTTTATCAGCTGTTCATTAACCCTTATTCCAGTCCGTGTTC-------
TGACAATGGGTGTGTTGTACTCATAGTATAACCTTGAGTGTCTGGTTACATCTTTAATGTACCCGTCGAATCAAAATTTC
TCAATATCTAGGAACTGACTTTCAATCCGGTTATACAGTGGTTAACGGGAAAAAATAATCTGCTTATGCAGTATTTCACC
AAAACAAGTAGTACCAGGTTCCGAGTTAACCTGAATGATAAGAACCCGGTTTCAATCATAAGAACAGTAAACAGTTTTAG
GCTCGAATTGAAGTGACCGCATTATCAAGGGAAGTTTGTCAGGCTACAAGAGGATGGACGCAGGTGGTTCTTCCACCGGA
GCTCTAAAGATTGGGGCATGCGTGCTGCTGCCTCTTTTCCTGCCTGTAGCTTTGTTCTTATAGGAACTAGGGCAGTGGCC
CTCGTAATTGCAAAGGGAATCGCTTAAGTGTGTCTAACAGGTATGAACAATAAGCTTCTGGTTTCATAGTGCATATTAGA
CCATTAGAAATTGTTGATAGCCATTGAAAATGTTACATTTGGGTTGCAAACCTATGTATCCGGCATTTTGAAATTTAATT
CAGAATTGGTCCATATAATTTAGTCAAATCTGGATTTTTTTTTCTGACCAAAATTGAATTTTGTTTGAATCTAGGAGATT
ATAAAC--------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-------------S----S-S---SSS--SS-S-SSS-S-SSSSS--------------
----S--------------------SS---SSSSS----------------------------S---------SSS---S
-SS--SS-----------------------------------------------SSSSSSSSS-----------S-----
----S------S-SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--------------SS----S------S-----------S---------------SS
--------------------SS----------------------------------------------------------
----S--------S-------SS----------S--S-----------------S-----------------S-------
------------S---S-----SSSSSSS-----------------------------S---S-----------------
----S-------------S--------------S-S----------------S--S------------S-----------
---------------S-----------------------------------------S-------SSSS-----------
-----------------S-S------------------------------S-------------S---------S-----
---S--------------------S-S---S------------S-----S---S----------------------SS--
------------------------------------------------------------SSSSSSS-SSSSSSSS--S-
SSS-----------------------------------------------------------------------------
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-----------------S----S--------S--S--------SSSSSS---------------------------SS--
-------------------S---------------------S----S---S---SS--S---S-----------------
------S----------------------S--------------------------S-----------------------
---S-----S--------S--------S--S----------------------------------------S-S------
-----------SS-S--------------------------S--S-S-S-------S--------SSSSSSSSS------
--------------S---S-------S-------S-------------S-------------S--------S--------
-S--S-------S--------------------S---S-----------------S---------------S------S-
------------------------------S---S----S--------------------------S-------------
S----S------------------------S-S----------S--------S-------S------------SSSSSSS
-------S----------------S----S------S---------------------------S---------------
----------------S---SSSSS-SSS-SS----------------------------------------------S-
----------------S------------S----------S-----S---------------------------------
-----------------S-------S---S-------S--------S----S-SSSSS------------S-----S---
-----------------------------S-----------------S-------------S-----------------S
S-----S------------SS--------------------------S-----S---S----------------------
---S-----------S-S-------------S---------------------S---------------S----------
--------S-------------S-S---------------------------S---------------------------
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_299
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---------------------------------------TCCAGCTCCATTCCCCCATA---------------------
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>reverse_1977
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--------------------------------------------------------GTTGTTCCTCGGCCAAGAGA----
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>forward_1465
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-----GACAGAGGAGGCCGTTGAAA-------------------------------------------------------
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>reverse_2581
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--------------------GCTGGTGGAGGAAATCTGCT----------------------------------------
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