Multiple sequence alignment - TraesCS7D01G324300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G324300 chr7D 100.000 1797 0 0 402 2198 414103898 414102102 0.000000e+00 3319
1 TraesCS7D01G324300 chr7D 89.226 297 29 3 1902 2196 20424562 20424267 3.450000e-98 368
2 TraesCS7D01G324300 chr7D 100.000 148 0 0 1 148 414104299 414104152 7.730000e-70 274
3 TraesCS7D01G324300 chr7D 90.123 81 7 1 1230 1310 264746912 264746833 1.070000e-18 104
4 TraesCS7D01G324300 chr7A 93.026 1434 67 4 402 1812 475978087 475976664 0.000000e+00 2063
5 TraesCS7D01G324300 chr7A 90.132 152 11 4 1 148 475978293 475978142 6.190000e-46 195
6 TraesCS7D01G324300 chr7B 94.750 819 34 3 418 1228 428492591 428491774 0.000000e+00 1266
7 TraesCS7D01G324300 chr7B 78.153 563 61 27 1354 1900 428491710 428491194 3.550000e-78 302
8 TraesCS7D01G324300 chr7B 92.857 140 6 4 1 137 428493170 428493032 1.330000e-47 200
9 TraesCS7D01G324300 chr7B 92.174 115 9 0 1498 1612 728628487 728628373 1.750000e-36 163
10 TraesCS7D01G324300 chr3B 91.582 297 23 2 1902 2196 489694546 489694250 2.030000e-110 409
11 TraesCS7D01G324300 chr6D 91.409 291 21 4 1907 2196 35028670 35028957 1.580000e-106 396
12 TraesCS7D01G324300 chr2D 90.728 302 21 4 1899 2196 503913172 503913470 1.580000e-106 396
13 TraesCS7D01G324300 chr2D 89.262 298 30 2 1900 2196 3771969 3772265 2.670000e-99 372
14 TraesCS7D01G324300 chr2D 88.889 90 7 1 1226 1315 473096450 473096364 8.300000e-20 108
15 TraesCS7D01G324300 chr4B 89.632 299 28 3 1899 2196 81985575 81985871 5.730000e-101 377
16 TraesCS7D01G324300 chr4B 91.129 124 10 1 1493 1615 592702024 592702147 1.350000e-37 167
17 TraesCS7D01G324300 chr4B 88.889 90 10 0 1226 1315 315723273 315723362 6.410000e-21 111
18 TraesCS7D01G324300 chr3A 89.298 299 26 5 1900 2196 538843437 538843143 9.590000e-99 370
19 TraesCS7D01G324300 chr3A 86.869 99 6 3 1224 1315 481889724 481889822 1.070000e-18 104
20 TraesCS7D01G324300 chr3D 89.262 298 24 6 1900 2196 411623349 411623639 1.240000e-97 366
21 TraesCS7D01G324300 chr2B 88.704 301 31 3 1898 2196 461519908 461519609 4.460000e-97 364
22 TraesCS7D01G324300 chr2A 91.870 123 10 0 1491 1613 389220805 389220927 2.900000e-39 172
23 TraesCS7D01G324300 chr2A 90.110 91 5 2 1226 1316 522505495 522505409 4.960000e-22 115
24 TraesCS7D01G324300 chr1B 91.270 126 10 1 1489 1613 332136152 332136277 1.040000e-38 171
25 TraesCS7D01G324300 chr1B 90.000 120 12 0 1493 1612 325262215 325262096 2.920000e-34 156
26 TraesCS7D01G324300 chr5B 90.909 121 11 0 1492 1612 517217108 517216988 1.750000e-36 163
27 TraesCS7D01G324300 chr1A 89.831 118 12 0 1496 1613 86576553 86576670 3.780000e-33 152
28 TraesCS7D01G324300 chr6B 88.095 126 14 1 1493 1617 160908406 160908281 4.890000e-32 148
29 TraesCS7D01G324300 chr6B 88.372 86 10 0 1230 1315 545839649 545839564 1.070000e-18 104
30 TraesCS7D01G324300 chr1D 90.909 88 7 1 1223 1310 30101021 30101107 1.380000e-22 117
31 TraesCS7D01G324300 chr4A 88.889 90 5 1 1230 1314 236122213 236122124 2.980000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G324300 chr7D 414102102 414104299 2197 True 1796.500000 3319 100.000000 1 2198 2 chr7D.!!$R3 2197
1 TraesCS7D01G324300 chr7A 475976664 475978293 1629 True 1129.000000 2063 91.579000 1 1812 2 chr7A.!!$R1 1811
2 TraesCS7D01G324300 chr7B 428491194 428493170 1976 True 589.333333 1266 88.586667 1 1900 3 chr7B.!!$R2 1899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 1101 2.313342 TCTTCCTCTTCCTCTAGCCACT 59.687 50.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 2332 0.035056 CCGCATCCCTTCTTGAAGGT 60.035 55.0 23.12 7.5 38.28 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 4.687262 AGGCCCATATTCATGATTCCAT 57.313 40.909 0.00 0.00 33.67 3.41
47 49 4.617959 CATGATTCCATGGTCTTGCATTC 58.382 43.478 12.58 0.00 44.88 2.67
88 92 7.516943 GCCGAGCTACTTAGTTTATCACAAATC 60.517 40.741 0.00 0.00 0.00 2.17
89 93 7.491372 CCGAGCTACTTAGTTTATCACAAATCA 59.509 37.037 0.00 0.00 0.00 2.57
90 94 8.321716 CGAGCTACTTAGTTTATCACAAATCAC 58.678 37.037 0.00 0.00 0.00 3.06
91 95 8.186178 AGCTACTTAGTTTATCACAAATCACG 57.814 34.615 0.00 0.00 0.00 4.35
131 136 6.338146 CAGATTACTGAAATTCGGTAGGTCA 58.662 40.000 20.99 8.54 46.03 4.02
141 146 7.282675 TGAAATTCGGTAGGTCAGTTTGTTAAA 59.717 33.333 0.00 0.00 0.00 1.52
428 592 4.067896 GCAACTGTTCTCTCATTCAAGGA 58.932 43.478 0.00 0.00 0.00 3.36
476 640 8.564574 TGTCTCAACCAAACAATCTTAATGTAC 58.435 33.333 0.00 0.00 0.00 2.90
504 668 4.202315 GCCTTATTTTTGTTCCAACCAGGT 60.202 41.667 0.00 0.00 39.02 4.00
529 693 4.026052 ACCCCTTTCCATTAATTGCTCAG 58.974 43.478 0.00 0.00 0.00 3.35
561 725 4.009675 CCAGTATTTACAGCAGCAAAGGA 58.990 43.478 0.00 0.00 0.00 3.36
699 869 4.127171 CGTGGAAGGAGAAAGTCTTTCAA 58.873 43.478 23.93 0.00 41.94 2.69
706 876 9.183368 GGAAGGAGAAAGTCTTTCAATCATAAT 57.817 33.333 23.93 3.97 41.94 1.28
773 945 6.644347 TGTCTGCTTAAGGAAATCTAAGGAG 58.356 40.000 4.29 4.52 38.70 3.69
790 962 8.732746 TCTAAGGAGTTTTTATGTTAGGATGC 57.267 34.615 0.00 0.00 0.00 3.91
843 1015 4.269523 GCAGTGGGAGGTGCACCA 62.270 66.667 36.39 14.54 39.62 4.17
919 1098 3.222603 CTCTCTTCCTCTTCCTCTAGCC 58.777 54.545 0.00 0.00 0.00 3.93
920 1099 2.583101 TCTCTTCCTCTTCCTCTAGCCA 59.417 50.000 0.00 0.00 0.00 4.75
921 1100 2.693074 CTCTTCCTCTTCCTCTAGCCAC 59.307 54.545 0.00 0.00 0.00 5.01
922 1101 2.313342 TCTTCCTCTTCCTCTAGCCACT 59.687 50.000 0.00 0.00 0.00 4.00
923 1102 2.930109 TCCTCTTCCTCTAGCCACTT 57.070 50.000 0.00 0.00 0.00 3.16
924 1103 4.017407 TCTTCCTCTTCCTCTAGCCACTTA 60.017 45.833 0.00 0.00 0.00 2.24
925 1104 4.544564 TCCTCTTCCTCTAGCCACTTAT 57.455 45.455 0.00 0.00 0.00 1.73
1005 1184 1.021390 GCGGTGAAGTGTCCATGGAG 61.021 60.000 16.81 0.48 0.00 3.86
1008 1187 1.347707 GGTGAAGTGTCCATGGAGTCA 59.652 52.381 16.81 13.45 0.00 3.41
1032 1211 1.444383 GAGCTCATGCGTGTCGTCA 60.444 57.895 9.40 0.00 45.42 4.35
1188 1367 3.323979 ACAAGTACTGGGACACGAAGAAT 59.676 43.478 1.45 0.00 0.00 2.40
1248 1427 2.793288 TCCCTCCGTCCCAAAATAAC 57.207 50.000 0.00 0.00 0.00 1.89
1254 1433 4.324267 CTCCGTCCCAAAATAACTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
1261 1440 7.589954 CGTCCCAAAATAACTGTCTTAACTTTG 59.410 37.037 0.00 0.00 0.00 2.77
1310 1489 2.981859 TATTTTGAGACGGAGGGAGC 57.018 50.000 0.00 0.00 0.00 4.70
1331 1510 1.246649 TATGCAGTTTGGCTGTGTGG 58.753 50.000 0.00 0.00 46.64 4.17
1335 1514 0.883833 CAGTTTGGCTGTGTGGATCC 59.116 55.000 4.20 4.20 40.27 3.36
1453 1656 7.039152 TGTGTTTCTTCTCATCTCTCATCTCTT 60.039 37.037 0.00 0.00 0.00 2.85
1470 1673 1.093159 CTTGCTGGCCTCTCAATCAC 58.907 55.000 3.32 0.00 0.00 3.06
1481 1684 3.268330 CTCTCAATCACAGTGTCCCATG 58.732 50.000 0.00 0.00 0.00 3.66
1691 1905 7.014134 CCTTGTGACTCTGAGATCATGTATACT 59.986 40.741 12.44 0.00 0.00 2.12
1720 1934 0.674895 ACCATGCCTTCGTCTTCAGC 60.675 55.000 0.00 0.00 0.00 4.26
1726 1940 2.126463 TTCGTCTTCAGCGAGGCG 60.126 61.111 5.61 5.61 45.59 5.52
1752 1966 3.697045 TCCTTTTTCGCCTTTCTTGAACA 59.303 39.130 0.00 0.00 0.00 3.18
1866 2080 6.793492 AGTCATGTAAGAGCAAACTTTCTC 57.207 37.500 0.00 0.00 0.00 2.87
1908 2123 6.619801 GAGCAAACTCTCCTTTTTACTGAA 57.380 37.500 0.00 0.00 40.03 3.02
1909 2124 7.027778 GAGCAAACTCTCCTTTTTACTGAAA 57.972 36.000 0.00 0.00 40.03 2.69
1910 2125 7.404671 AGCAAACTCTCCTTTTTACTGAAAA 57.595 32.000 0.00 0.00 35.94 2.29
1911 2126 7.836842 AGCAAACTCTCCTTTTTACTGAAAAA 58.163 30.769 0.00 0.00 41.24 1.94
1925 2140 4.726646 AAAAAGGTTGCCCCTGCT 57.273 50.000 0.00 0.00 45.47 4.24
1926 2141 2.929467 AAAAAGGTTGCCCCTGCTT 58.071 47.368 0.00 0.00 45.47 3.91
1927 2142 1.212375 AAAAAGGTTGCCCCTGCTTT 58.788 45.000 0.00 0.00 45.47 3.51
1928 2143 0.469494 AAAAGGTTGCCCCTGCTTTG 59.531 50.000 0.00 0.00 45.47 2.77
1929 2144 0.690744 AAAGGTTGCCCCTGCTTTGT 60.691 50.000 0.00 0.00 45.47 2.83
1930 2145 0.187361 AAGGTTGCCCCTGCTTTGTA 59.813 50.000 0.00 0.00 45.47 2.41
1931 2146 0.409484 AGGTTGCCCCTGCTTTGTAT 59.591 50.000 0.00 0.00 44.08 2.29
1932 2147 1.203174 AGGTTGCCCCTGCTTTGTATT 60.203 47.619 0.00 0.00 44.08 1.89
1933 2148 1.623311 GGTTGCCCCTGCTTTGTATTT 59.377 47.619 0.00 0.00 38.71 1.40
1934 2149 2.353704 GGTTGCCCCTGCTTTGTATTTC 60.354 50.000 0.00 0.00 38.71 2.17
1935 2150 2.298729 GTTGCCCCTGCTTTGTATTTCA 59.701 45.455 0.00 0.00 38.71 2.69
1936 2151 2.603021 TGCCCCTGCTTTGTATTTCAA 58.397 42.857 0.00 0.00 38.71 2.69
1937 2152 2.968574 TGCCCCTGCTTTGTATTTCAAA 59.031 40.909 0.00 0.00 42.72 2.69
1938 2153 3.389329 TGCCCCTGCTTTGTATTTCAAAA 59.611 39.130 0.00 0.00 44.08 2.44
1939 2154 3.745975 GCCCCTGCTTTGTATTTCAAAAC 59.254 43.478 0.00 0.00 44.08 2.43
1940 2155 4.742138 GCCCCTGCTTTGTATTTCAAAACA 60.742 41.667 0.00 0.00 44.08 2.83
1941 2156 5.363939 CCCCTGCTTTGTATTTCAAAACAA 58.636 37.500 0.00 0.00 44.08 2.83
1942 2157 5.236263 CCCCTGCTTTGTATTTCAAAACAAC 59.764 40.000 0.00 0.00 44.08 3.32
1943 2158 5.236263 CCCTGCTTTGTATTTCAAAACAACC 59.764 40.000 0.00 0.00 44.08 3.77
1944 2159 5.814705 CCTGCTTTGTATTTCAAAACAACCA 59.185 36.000 0.00 0.00 44.08 3.67
1945 2160 6.314896 CCTGCTTTGTATTTCAAAACAACCAA 59.685 34.615 0.00 0.00 44.08 3.67
1946 2161 7.066374 TGCTTTGTATTTCAAAACAACCAAC 57.934 32.000 0.00 0.00 44.08 3.77
1947 2162 6.650807 TGCTTTGTATTTCAAAACAACCAACA 59.349 30.769 0.00 0.00 44.08 3.33
1948 2163 6.958752 GCTTTGTATTTCAAAACAACCAACAC 59.041 34.615 0.00 0.00 44.08 3.32
1949 2164 6.969828 TTGTATTTCAAAACAACCAACACC 57.030 33.333 0.00 0.00 30.88 4.16
1950 2165 5.103000 TGTATTTCAAAACAACCAACACCG 58.897 37.500 0.00 0.00 0.00 4.94
1951 2166 3.662247 TTTCAAAACAACCAACACCGT 57.338 38.095 0.00 0.00 0.00 4.83
1952 2167 4.778534 TTTCAAAACAACCAACACCGTA 57.221 36.364 0.00 0.00 0.00 4.02
1953 2168 3.761311 TCAAAACAACCAACACCGTAC 57.239 42.857 0.00 0.00 0.00 3.67
1954 2169 3.079578 TCAAAACAACCAACACCGTACA 58.920 40.909 0.00 0.00 0.00 2.90
1955 2170 3.119919 TCAAAACAACCAACACCGTACAC 60.120 43.478 0.00 0.00 0.00 2.90
1956 2171 2.110901 AACAACCAACACCGTACACA 57.889 45.000 0.00 0.00 0.00 3.72
1957 2172 2.335316 ACAACCAACACCGTACACAT 57.665 45.000 0.00 0.00 0.00 3.21
1958 2173 3.472283 ACAACCAACACCGTACACATA 57.528 42.857 0.00 0.00 0.00 2.29
1959 2174 3.395639 ACAACCAACACCGTACACATAG 58.604 45.455 0.00 0.00 0.00 2.23
1960 2175 2.088950 ACCAACACCGTACACATAGC 57.911 50.000 0.00 0.00 0.00 2.97
1961 2176 1.345089 ACCAACACCGTACACATAGCA 59.655 47.619 0.00 0.00 0.00 3.49
1962 2177 2.027561 ACCAACACCGTACACATAGCAT 60.028 45.455 0.00 0.00 0.00 3.79
1963 2178 3.006940 CCAACACCGTACACATAGCATT 58.993 45.455 0.00 0.00 0.00 3.56
1964 2179 3.181511 CCAACACCGTACACATAGCATTG 60.182 47.826 0.00 0.00 0.00 2.82
1965 2180 2.006888 ACACCGTACACATAGCATTGC 58.993 47.619 0.00 0.00 0.00 3.56
1966 2181 2.279741 CACCGTACACATAGCATTGCT 58.720 47.619 16.63 16.63 43.41 3.91
1967 2182 2.030823 CACCGTACACATAGCATTGCTG 59.969 50.000 21.31 8.82 40.10 4.41
1968 2183 1.599071 CCGTACACATAGCATTGCTGG 59.401 52.381 21.31 14.82 40.10 4.85
1969 2184 1.599071 CGTACACATAGCATTGCTGGG 59.401 52.381 21.31 14.48 40.10 4.45
1970 2185 1.949525 GTACACATAGCATTGCTGGGG 59.050 52.381 21.31 15.81 40.10 4.96
1971 2186 1.039233 ACACATAGCATTGCTGGGGC 61.039 55.000 21.31 0.00 40.10 5.80
1972 2187 1.825191 ACATAGCATTGCTGGGGCG 60.825 57.895 21.31 7.15 40.10 6.13
1973 2188 1.526686 CATAGCATTGCTGGGGCGA 60.527 57.895 21.31 0.00 40.10 5.54
1974 2189 1.228063 ATAGCATTGCTGGGGCGAG 60.228 57.895 21.31 0.00 40.10 5.03
1989 2204 2.242113 CGAGCAGCATATCAAGCCC 58.758 57.895 0.00 0.00 0.00 5.19
1990 2205 0.533531 CGAGCAGCATATCAAGCCCA 60.534 55.000 0.00 0.00 0.00 5.36
1991 2206 1.683943 GAGCAGCATATCAAGCCCAA 58.316 50.000 0.00 0.00 0.00 4.12
1992 2207 2.026641 GAGCAGCATATCAAGCCCAAA 58.973 47.619 0.00 0.00 0.00 3.28
1993 2208 2.428171 GAGCAGCATATCAAGCCCAAAA 59.572 45.455 0.00 0.00 0.00 2.44
1994 2209 2.429610 AGCAGCATATCAAGCCCAAAAG 59.570 45.455 0.00 0.00 0.00 2.27
1995 2210 2.817901 CAGCATATCAAGCCCAAAAGC 58.182 47.619 0.00 0.00 0.00 3.51
1996 2211 2.166870 CAGCATATCAAGCCCAAAAGCA 59.833 45.455 0.00 0.00 34.23 3.91
1997 2212 2.833338 AGCATATCAAGCCCAAAAGCAA 59.167 40.909 0.00 0.00 34.23 3.91
1998 2213 3.261390 AGCATATCAAGCCCAAAAGCAAA 59.739 39.130 0.00 0.00 34.23 3.68
1999 2214 4.002316 GCATATCAAGCCCAAAAGCAAAA 58.998 39.130 0.00 0.00 34.23 2.44
2000 2215 4.093850 GCATATCAAGCCCAAAAGCAAAAG 59.906 41.667 0.00 0.00 34.23 2.27
2001 2216 5.481105 CATATCAAGCCCAAAAGCAAAAGA 58.519 37.500 0.00 0.00 34.23 2.52
2002 2217 3.902881 TCAAGCCCAAAAGCAAAAGAA 57.097 38.095 0.00 0.00 34.23 2.52
2003 2218 3.795877 TCAAGCCCAAAAGCAAAAGAAG 58.204 40.909 0.00 0.00 34.23 2.85
2004 2219 3.450457 TCAAGCCCAAAAGCAAAAGAAGA 59.550 39.130 0.00 0.00 34.23 2.87
2005 2220 4.081198 TCAAGCCCAAAAGCAAAAGAAGAA 60.081 37.500 0.00 0.00 34.23 2.52
2006 2221 4.486125 AGCCCAAAAGCAAAAGAAGAAA 57.514 36.364 0.00 0.00 34.23 2.52
2007 2222 4.191544 AGCCCAAAAGCAAAAGAAGAAAC 58.808 39.130 0.00 0.00 34.23 2.78
2008 2223 3.938334 GCCCAAAAGCAAAAGAAGAAACA 59.062 39.130 0.00 0.00 0.00 2.83
2009 2224 4.394610 GCCCAAAAGCAAAAGAAGAAACAA 59.605 37.500 0.00 0.00 0.00 2.83
2010 2225 5.106357 GCCCAAAAGCAAAAGAAGAAACAAA 60.106 36.000 0.00 0.00 0.00 2.83
2011 2226 6.404623 GCCCAAAAGCAAAAGAAGAAACAAAT 60.405 34.615 0.00 0.00 0.00 2.32
2012 2227 6.968335 CCCAAAAGCAAAAGAAGAAACAAATG 59.032 34.615 0.00 0.00 0.00 2.32
2013 2228 6.469915 CCAAAAGCAAAAGAAGAAACAAATGC 59.530 34.615 0.00 0.00 0.00 3.56
2014 2229 5.739752 AAGCAAAAGAAGAAACAAATGCC 57.260 34.783 0.00 0.00 33.19 4.40
2015 2230 4.768583 AGCAAAAGAAGAAACAAATGCCA 58.231 34.783 0.00 0.00 33.19 4.92
2016 2231 5.184711 AGCAAAAGAAGAAACAAATGCCAA 58.815 33.333 0.00 0.00 33.19 4.52
2017 2232 5.065090 AGCAAAAGAAGAAACAAATGCCAAC 59.935 36.000 0.00 0.00 33.19 3.77
2018 2233 5.163774 GCAAAAGAAGAAACAAATGCCAACA 60.164 36.000 0.00 0.00 0.00 3.33
2019 2234 6.622462 GCAAAAGAAGAAACAAATGCCAACAA 60.622 34.615 0.00 0.00 0.00 2.83
2020 2235 6.421377 AAAGAAGAAACAAATGCCAACAAC 57.579 33.333 0.00 0.00 0.00 3.32
2021 2236 4.111916 AGAAGAAACAAATGCCAACAACG 58.888 39.130 0.00 0.00 0.00 4.10
2022 2237 2.820330 AGAAACAAATGCCAACAACGG 58.180 42.857 0.00 0.00 0.00 4.44
2030 2245 2.972505 CCAACAACGGCAGCTCGT 60.973 61.111 3.38 3.38 46.08 4.18
2031 2246 2.551270 CAACAACGGCAGCTCGTC 59.449 61.111 9.04 0.00 43.07 4.20
2032 2247 2.108157 AACAACGGCAGCTCGTCA 59.892 55.556 9.04 0.00 43.07 4.35
2033 2248 1.522806 AACAACGGCAGCTCGTCAA 60.523 52.632 9.04 0.00 43.07 3.18
2034 2249 1.092921 AACAACGGCAGCTCGTCAAA 61.093 50.000 9.04 0.00 43.07 2.69
2035 2250 1.205064 CAACGGCAGCTCGTCAAAG 59.795 57.895 9.04 0.00 43.07 2.77
2036 2251 2.607892 AACGGCAGCTCGTCAAAGC 61.608 57.895 9.04 0.00 43.07 3.51
2042 2257 3.188786 GCTCGTCAAAGCGCGGAT 61.189 61.111 8.83 0.00 31.56 4.18
2043 2258 2.697425 CTCGTCAAAGCGCGGATG 59.303 61.111 8.83 7.20 0.00 3.51
2044 2259 1.805539 CTCGTCAAAGCGCGGATGA 60.806 57.895 8.83 16.85 0.00 2.92
2045 2260 2.014093 CTCGTCAAAGCGCGGATGAC 62.014 60.000 24.14 24.14 39.98 3.06
2046 2261 2.785258 GTCAAAGCGCGGATGACC 59.215 61.111 23.78 11.85 37.97 4.02
2047 2262 2.435938 TCAAAGCGCGGATGACCC 60.436 61.111 8.83 0.00 0.00 4.46
2074 2289 4.388499 GCGCCCTCCGGAGACAAA 62.388 66.667 33.39 0.00 37.44 2.83
2075 2290 2.434359 CGCCCTCCGGAGACAAAC 60.434 66.667 33.39 14.95 0.00 2.93
2076 2291 2.046217 GCCCTCCGGAGACAAACC 60.046 66.667 33.39 9.80 0.00 3.27
2077 2292 2.890766 GCCCTCCGGAGACAAACCA 61.891 63.158 33.39 0.00 0.00 3.67
2078 2293 1.003718 CCCTCCGGAGACAAACCAC 60.004 63.158 33.39 0.00 0.00 4.16
2079 2294 1.003718 CCTCCGGAGACAAACCACC 60.004 63.158 33.39 0.00 0.00 4.61
2080 2295 1.752198 CTCCGGAGACAAACCACCA 59.248 57.895 28.21 0.00 0.00 4.17
2081 2296 0.602905 CTCCGGAGACAAACCACCAC 60.603 60.000 28.21 0.00 0.00 4.16
2082 2297 1.147376 CCGGAGACAAACCACCACA 59.853 57.895 0.00 0.00 0.00 4.17
2083 2298 0.464735 CCGGAGACAAACCACCACAA 60.465 55.000 0.00 0.00 0.00 3.33
2084 2299 0.661020 CGGAGACAAACCACCACAAC 59.339 55.000 0.00 0.00 0.00 3.32
2085 2300 1.029681 GGAGACAAACCACCACAACC 58.970 55.000 0.00 0.00 0.00 3.77
2086 2301 1.029681 GAGACAAACCACCACAACCC 58.970 55.000 0.00 0.00 0.00 4.11
2087 2302 0.750182 AGACAAACCACCACAACCCG 60.750 55.000 0.00 0.00 0.00 5.28
2088 2303 0.748729 GACAAACCACCACAACCCGA 60.749 55.000 0.00 0.00 0.00 5.14
2089 2304 0.750182 ACAAACCACCACAACCCGAG 60.750 55.000 0.00 0.00 0.00 4.63
2090 2305 1.152839 AAACCACCACAACCCGAGG 60.153 57.895 0.00 0.00 0.00 4.63
2091 2306 3.785122 AACCACCACAACCCGAGGC 62.785 63.158 0.00 0.00 0.00 4.70
2092 2307 3.953775 CCACCACAACCCGAGGCT 61.954 66.667 0.00 0.00 0.00 4.58
2093 2308 2.358737 CACCACAACCCGAGGCTC 60.359 66.667 3.87 3.87 0.00 4.70
2094 2309 3.637273 ACCACAACCCGAGGCTCC 61.637 66.667 9.32 0.00 0.00 4.70
2095 2310 4.760047 CCACAACCCGAGGCTCCG 62.760 72.222 9.32 1.88 0.00 4.63
2096 2311 3.691342 CACAACCCGAGGCTCCGA 61.691 66.667 9.32 0.00 0.00 4.55
2097 2312 2.683933 ACAACCCGAGGCTCCGAT 60.684 61.111 9.32 0.00 0.00 4.18
2098 2313 2.107141 CAACCCGAGGCTCCGATC 59.893 66.667 9.32 0.00 0.00 3.69
2099 2314 2.042843 AACCCGAGGCTCCGATCT 60.043 61.111 9.32 0.00 0.00 2.75
2100 2315 2.427245 AACCCGAGGCTCCGATCTG 61.427 63.158 9.32 0.00 0.00 2.90
2101 2316 3.610669 CCCGAGGCTCCGATCTGG 61.611 72.222 9.32 2.77 40.09 3.86
2102 2317 4.292178 CCGAGGCTCCGATCTGGC 62.292 72.222 9.32 0.00 37.80 4.85
2103 2318 3.531207 CGAGGCTCCGATCTGGCA 61.531 66.667 9.32 0.00 37.80 4.92
2104 2319 2.107953 GAGGCTCCGATCTGGCAC 59.892 66.667 2.15 0.00 37.80 5.01
2105 2320 3.781770 GAGGCTCCGATCTGGCACG 62.782 68.421 2.15 0.00 37.80 5.34
2106 2321 4.148825 GGCTCCGATCTGGCACGT 62.149 66.667 0.00 0.00 37.80 4.49
2107 2322 2.782222 GGCTCCGATCTGGCACGTA 61.782 63.158 0.00 0.00 37.80 3.57
2108 2323 1.589196 GCTCCGATCTGGCACGTAC 60.589 63.158 0.00 0.00 37.80 3.67
2109 2324 1.065928 CTCCGATCTGGCACGTACC 59.934 63.158 0.00 0.00 37.80 3.34
2110 2325 1.663379 CTCCGATCTGGCACGTACCA 61.663 60.000 7.43 7.43 37.80 3.25
2111 2326 1.216977 CCGATCTGGCACGTACCAA 59.783 57.895 9.24 0.66 39.86 3.67
2112 2327 0.806102 CCGATCTGGCACGTACCAAG 60.806 60.000 9.24 3.62 39.86 3.61
2113 2328 1.421410 CGATCTGGCACGTACCAAGC 61.421 60.000 9.24 2.42 39.86 4.01
2114 2329 0.391130 GATCTGGCACGTACCAAGCA 60.391 55.000 9.24 0.00 39.86 3.91
2115 2330 0.391661 ATCTGGCACGTACCAAGCAG 60.392 55.000 9.24 0.00 39.86 4.24
2116 2331 2.668212 TGGCACGTACCAAGCAGC 60.668 61.111 4.61 0.00 36.55 5.25
2117 2332 2.668212 GGCACGTACCAAGCAGCA 60.668 61.111 0.00 0.00 0.00 4.41
2118 2333 2.556287 GCACGTACCAAGCAGCAC 59.444 61.111 0.00 0.00 0.00 4.40
2119 2334 2.966309 GCACGTACCAAGCAGCACC 61.966 63.158 0.00 0.00 0.00 5.01
2120 2335 1.301716 CACGTACCAAGCAGCACCT 60.302 57.895 0.00 0.00 0.00 4.00
2121 2336 0.884704 CACGTACCAAGCAGCACCTT 60.885 55.000 0.00 0.00 0.00 3.50
2122 2337 0.602905 ACGTACCAAGCAGCACCTTC 60.603 55.000 0.00 0.00 0.00 3.46
2123 2338 0.602638 CGTACCAAGCAGCACCTTCA 60.603 55.000 0.00 0.00 0.00 3.02
2124 2339 1.604604 GTACCAAGCAGCACCTTCAA 58.395 50.000 0.00 0.00 0.00 2.69
2125 2340 1.537202 GTACCAAGCAGCACCTTCAAG 59.463 52.381 0.00 0.00 0.00 3.02
2126 2341 0.183492 ACCAAGCAGCACCTTCAAGA 59.817 50.000 0.00 0.00 0.00 3.02
2127 2342 1.321474 CCAAGCAGCACCTTCAAGAA 58.679 50.000 0.00 0.00 0.00 2.52
2128 2343 1.268899 CCAAGCAGCACCTTCAAGAAG 59.731 52.381 2.83 2.83 38.14 2.85
2137 2352 2.101700 CTTCAAGAAGGGATGCGGC 58.898 57.895 1.86 0.00 34.87 6.53
2138 2353 1.709147 CTTCAAGAAGGGATGCGGCG 61.709 60.000 0.51 0.51 34.87 6.46
2139 2354 3.880846 CAAGAAGGGATGCGGCGC 61.881 66.667 27.44 27.44 0.00 6.53
2164 2379 4.385405 GCTGCTGCCCAGACGAGT 62.385 66.667 3.85 0.00 44.64 4.18
2165 2380 2.125753 CTGCTGCCCAGACGAGTC 60.126 66.667 0.00 0.00 44.64 3.36
2166 2381 3.655810 CTGCTGCCCAGACGAGTCC 62.656 68.421 0.00 0.00 44.64 3.85
2167 2382 3.386237 GCTGCCCAGACGAGTCCT 61.386 66.667 0.00 0.00 0.00 3.85
2168 2383 2.052690 GCTGCCCAGACGAGTCCTA 61.053 63.158 0.00 0.00 0.00 2.94
2169 2384 2.010582 GCTGCCCAGACGAGTCCTAG 62.011 65.000 0.00 0.00 0.00 3.02
2170 2385 1.379977 TGCCCAGACGAGTCCTAGG 60.380 63.158 0.82 0.82 0.00 3.02
2171 2386 2.128507 GCCCAGACGAGTCCTAGGG 61.129 68.421 9.46 16.78 38.77 3.53
2172 2387 1.306970 CCCAGACGAGTCCTAGGGT 59.693 63.158 9.46 0.00 34.14 4.34
2173 2388 0.324460 CCCAGACGAGTCCTAGGGTT 60.324 60.000 9.46 0.00 34.14 4.11
2174 2389 1.558233 CCAGACGAGTCCTAGGGTTT 58.442 55.000 9.46 0.00 0.00 3.27
2175 2390 1.477295 CCAGACGAGTCCTAGGGTTTC 59.523 57.143 9.46 3.58 0.00 2.78
2176 2391 1.477295 CAGACGAGTCCTAGGGTTTCC 59.523 57.143 9.46 0.00 0.00 3.13
2177 2392 0.822811 GACGAGTCCTAGGGTTTCCC 59.177 60.000 9.46 0.00 45.90 3.97
2196 2411 2.430367 GGCACGTGGAGGGAAGTT 59.570 61.111 18.88 0.00 0.00 2.66
2197 2412 1.966451 GGCACGTGGAGGGAAGTTG 60.966 63.158 18.88 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.474303 TGGAATCATGAATATGGGCCTT 57.526 40.909 4.53 0.00 34.97 4.35
406 411 4.067896 TCCTTGAATGAGAGAACAGTTGC 58.932 43.478 0.00 0.00 0.00 4.17
450 614 7.581213 ACATTAAGATTGTTTGGTTGAGACA 57.419 32.000 0.00 0.00 0.00 3.41
504 668 4.424842 AGCAATTAATGGAAAGGGGTTCA 58.575 39.130 0.00 0.00 38.06 3.18
529 693 4.679654 GCTGTAAATACTGGTTGTTTGCAC 59.320 41.667 0.00 0.00 0.00 4.57
536 700 4.764679 TTGCTGCTGTAAATACTGGTTG 57.235 40.909 0.00 0.00 0.00 3.77
561 725 3.328535 ACACAACTCCCTTTCCCATTT 57.671 42.857 0.00 0.00 0.00 2.32
699 869 6.318144 CAGCTGAGGTGAAGTTTCATTATGAT 59.682 38.462 8.42 0.00 39.73 2.45
706 876 1.134128 TGCAGCTGAGGTGAAGTTTCA 60.134 47.619 20.43 0.00 32.22 2.69
773 945 5.485662 AGAGCGCATCCTAACATAAAAAC 57.514 39.130 11.47 0.00 0.00 2.43
781 953 2.317530 AAGGAAGAGCGCATCCTAAC 57.682 50.000 24.06 9.15 45.33 2.34
790 962 1.308783 GGCTTGGGAAAGGAAGAGCG 61.309 60.000 0.00 0.00 0.00 5.03
843 1015 1.112113 ACTGAGAACTGTGGTCGTGT 58.888 50.000 0.00 0.00 0.00 4.49
919 1098 5.240623 AGCTAGCTAGAGTGCAGTATAAGTG 59.759 44.000 25.15 0.00 34.99 3.16
920 1099 5.381757 AGCTAGCTAGAGTGCAGTATAAGT 58.618 41.667 25.15 0.00 34.99 2.24
921 1100 5.957842 AGCTAGCTAGAGTGCAGTATAAG 57.042 43.478 25.15 0.00 34.99 1.73
922 1101 5.828328 TCAAGCTAGCTAGAGTGCAGTATAA 59.172 40.000 25.15 0.84 34.99 0.98
923 1102 5.239744 GTCAAGCTAGCTAGAGTGCAGTATA 59.760 44.000 25.15 0.00 34.99 1.47
924 1103 4.037446 GTCAAGCTAGCTAGAGTGCAGTAT 59.963 45.833 25.15 0.00 34.99 2.12
925 1104 3.378742 GTCAAGCTAGCTAGAGTGCAGTA 59.621 47.826 25.15 2.51 34.99 2.74
1005 1184 2.887568 CATGAGCTCGCCGGTGAC 60.888 66.667 15.21 11.37 0.00 3.67
1032 1211 0.469070 GCATCTCCACCTCTGCATCT 59.531 55.000 0.00 0.00 34.77 2.90
1188 1367 6.152661 CCAGATGTTTTGGCAATTAGGTCTTA 59.847 38.462 0.00 0.00 0.00 2.10
1297 1476 0.037790 GCATATGCTCCCTCCGTCTC 60.038 60.000 20.64 0.00 38.21 3.36
1298 1477 0.760567 TGCATATGCTCCCTCCGTCT 60.761 55.000 27.13 0.00 42.66 4.18
1331 1510 1.169034 GGCCTTTGCATCCTCGGATC 61.169 60.000 0.00 0.00 40.13 3.36
1335 1514 1.305219 TTTCGGCCTTTGCATCCTCG 61.305 55.000 0.00 0.00 40.13 4.63
1368 1571 4.458989 CAGATAGCAAACACCAAAGGCTAA 59.541 41.667 0.00 0.00 40.12 3.09
1427 1630 6.436847 AGAGATGAGAGATGAGAAGAAACACA 59.563 38.462 0.00 0.00 0.00 3.72
1453 1656 0.035725 CTGTGATTGAGAGGCCAGCA 60.036 55.000 5.01 0.00 0.00 4.41
1481 1684 6.722129 ACAGAGGGAGTATATCATACTGGTTC 59.278 42.308 3.62 0.00 31.51 3.62
1581 1784 7.265673 CCTCTGTCCAGAAATACTTATCGAAA 58.734 38.462 0.00 0.00 36.94 3.46
1583 1786 5.302059 CCCTCTGTCCAGAAATACTTATCGA 59.698 44.000 0.00 0.00 36.94 3.59
1587 1794 5.590818 ACTCCCTCTGTCCAGAAATACTTA 58.409 41.667 0.00 0.00 36.94 2.24
1691 1905 5.069914 AGACGAAGGCATGGTATGTATTACA 59.930 40.000 0.00 0.00 31.99 2.41
1720 1934 1.267383 GCGAAAAAGGAATACGCCTCG 60.267 52.381 0.00 0.00 42.79 4.63
1726 1940 6.009115 TCAAGAAAGGCGAAAAAGGAATAC 57.991 37.500 0.00 0.00 0.00 1.89
1741 1955 8.152309 AGAGAAATCTGACTTGTTCAAGAAAG 57.848 34.615 17.75 13.57 32.21 2.62
1752 1966 8.210265 GGATAATCCAAGAGAGAAATCTGACTT 58.790 37.037 0.00 0.00 36.28 3.01
1843 2057 6.291377 TGAGAAAGTTTGCTCTTACATGACT 58.709 36.000 0.00 0.00 32.44 3.41
1913 2128 6.310910 TTGAAATACAAAGCAGGGGCAACC 62.311 45.833 0.00 0.00 46.31 3.77
1914 2129 2.298729 TGAAATACAAAGCAGGGGCAAC 59.701 45.455 0.00 0.00 44.61 4.17
1915 2130 2.603021 TGAAATACAAAGCAGGGGCAA 58.397 42.857 0.00 0.00 44.61 4.52
1916 2131 2.300956 TGAAATACAAAGCAGGGGCA 57.699 45.000 0.00 0.00 44.61 5.36
1917 2132 3.676291 TTTGAAATACAAAGCAGGGGC 57.324 42.857 0.00 0.00 42.57 5.80
1923 2138 6.958752 GTGTTGGTTGTTTTGAAATACAAAGC 59.041 34.615 7.06 0.00 46.93 3.51
1924 2139 7.460296 GGTGTTGGTTGTTTTGAAATACAAAG 58.540 34.615 7.06 0.00 46.93 2.77
1925 2140 6.090898 CGGTGTTGGTTGTTTTGAAATACAAA 59.909 34.615 7.06 0.00 45.22 2.83
1926 2141 5.577164 CGGTGTTGGTTGTTTTGAAATACAA 59.423 36.000 2.93 2.93 36.65 2.41
1927 2142 5.103000 CGGTGTTGGTTGTTTTGAAATACA 58.897 37.500 0.00 0.00 0.00 2.29
1928 2143 5.103687 ACGGTGTTGGTTGTTTTGAAATAC 58.896 37.500 0.00 0.00 0.00 1.89
1929 2144 5.326200 ACGGTGTTGGTTGTTTTGAAATA 57.674 34.783 0.00 0.00 0.00 1.40
1930 2145 4.195225 ACGGTGTTGGTTGTTTTGAAAT 57.805 36.364 0.00 0.00 0.00 2.17
1931 2146 3.662247 ACGGTGTTGGTTGTTTTGAAA 57.338 38.095 0.00 0.00 0.00 2.69
1932 2147 3.504906 TGTACGGTGTTGGTTGTTTTGAA 59.495 39.130 0.00 0.00 0.00 2.69
1933 2148 3.079578 TGTACGGTGTTGGTTGTTTTGA 58.920 40.909 0.00 0.00 0.00 2.69
1934 2149 3.172824 GTGTACGGTGTTGGTTGTTTTG 58.827 45.455 0.00 0.00 0.00 2.44
1935 2150 2.818432 TGTGTACGGTGTTGGTTGTTTT 59.182 40.909 0.00 0.00 0.00 2.43
1936 2151 2.434428 TGTGTACGGTGTTGGTTGTTT 58.566 42.857 0.00 0.00 0.00 2.83
1937 2152 2.110901 TGTGTACGGTGTTGGTTGTT 57.889 45.000 0.00 0.00 0.00 2.83
1938 2153 2.335316 ATGTGTACGGTGTTGGTTGT 57.665 45.000 0.00 0.00 0.00 3.32
1939 2154 2.158841 GCTATGTGTACGGTGTTGGTTG 59.841 50.000 0.00 0.00 0.00 3.77
1940 2155 2.224329 TGCTATGTGTACGGTGTTGGTT 60.224 45.455 0.00 0.00 0.00 3.67
1941 2156 1.345089 TGCTATGTGTACGGTGTTGGT 59.655 47.619 0.00 0.00 0.00 3.67
1942 2157 2.087501 TGCTATGTGTACGGTGTTGG 57.912 50.000 0.00 0.00 0.00 3.77
1943 2158 3.727673 GCAATGCTATGTGTACGGTGTTG 60.728 47.826 0.00 0.00 0.00 3.33
1944 2159 2.418628 GCAATGCTATGTGTACGGTGTT 59.581 45.455 0.00 0.00 0.00 3.32
1945 2160 2.006888 GCAATGCTATGTGTACGGTGT 58.993 47.619 0.00 0.00 0.00 4.16
1946 2161 2.030823 CAGCAATGCTATGTGTACGGTG 59.969 50.000 7.70 0.00 36.40 4.94
1947 2162 2.279741 CAGCAATGCTATGTGTACGGT 58.720 47.619 7.70 0.00 36.40 4.83
1948 2163 1.599071 CCAGCAATGCTATGTGTACGG 59.401 52.381 7.70 0.00 36.40 4.02
1949 2164 1.599071 CCCAGCAATGCTATGTGTACG 59.401 52.381 7.70 0.00 36.40 3.67
1950 2165 1.949525 CCCCAGCAATGCTATGTGTAC 59.050 52.381 7.70 0.00 36.40 2.90
1951 2166 1.750332 GCCCCAGCAATGCTATGTGTA 60.750 52.381 7.70 0.00 36.40 2.90
1952 2167 1.039233 GCCCCAGCAATGCTATGTGT 61.039 55.000 7.70 0.00 36.40 3.72
1953 2168 1.737816 GCCCCAGCAATGCTATGTG 59.262 57.895 7.70 0.00 36.40 3.21
1954 2169 1.825191 CGCCCCAGCAATGCTATGT 60.825 57.895 7.70 0.00 36.40 2.29
1955 2170 1.512996 CTCGCCCCAGCAATGCTATG 61.513 60.000 7.70 1.80 36.40 2.23
1956 2171 1.228063 CTCGCCCCAGCAATGCTAT 60.228 57.895 7.70 0.00 36.40 2.97
1957 2172 2.190313 CTCGCCCCAGCAATGCTA 59.810 61.111 7.70 0.00 36.40 3.49
1965 2180 1.670406 GATATGCTGCTCGCCCCAG 60.670 63.158 0.00 0.00 38.05 4.45
1966 2181 1.981951 TTGATATGCTGCTCGCCCCA 61.982 55.000 0.00 0.00 38.05 4.96
1967 2182 1.227943 TTGATATGCTGCTCGCCCC 60.228 57.895 0.00 0.00 38.05 5.80
1968 2183 1.849976 GCTTGATATGCTGCTCGCCC 61.850 60.000 0.00 0.00 38.05 6.13
1969 2184 1.573436 GCTTGATATGCTGCTCGCC 59.427 57.895 0.00 0.00 38.05 5.54
1970 2185 1.573436 GGCTTGATATGCTGCTCGC 59.427 57.895 0.00 0.00 39.77 5.03
1971 2186 0.533531 TGGGCTTGATATGCTGCTCG 60.534 55.000 0.00 0.00 0.00 5.03
1972 2187 1.683943 TTGGGCTTGATATGCTGCTC 58.316 50.000 0.00 0.00 0.00 4.26
1973 2188 2.148446 TTTGGGCTTGATATGCTGCT 57.852 45.000 0.00 0.00 0.00 4.24
1974 2189 2.817901 CTTTTGGGCTTGATATGCTGC 58.182 47.619 0.00 0.00 0.00 5.25
1975 2190 2.166870 TGCTTTTGGGCTTGATATGCTG 59.833 45.455 0.00 0.00 0.00 4.41
1976 2191 2.459644 TGCTTTTGGGCTTGATATGCT 58.540 42.857 0.00 0.00 0.00 3.79
1977 2192 2.965572 TGCTTTTGGGCTTGATATGC 57.034 45.000 0.00 0.00 0.00 3.14
1978 2193 5.481105 TCTTTTGCTTTTGGGCTTGATATG 58.519 37.500 0.00 0.00 0.00 1.78
1979 2194 5.743636 TCTTTTGCTTTTGGGCTTGATAT 57.256 34.783 0.00 0.00 0.00 1.63
1980 2195 5.304101 TCTTCTTTTGCTTTTGGGCTTGATA 59.696 36.000 0.00 0.00 0.00 2.15
1981 2196 4.101430 TCTTCTTTTGCTTTTGGGCTTGAT 59.899 37.500 0.00 0.00 0.00 2.57
1982 2197 3.450457 TCTTCTTTTGCTTTTGGGCTTGA 59.550 39.130 0.00 0.00 0.00 3.02
1983 2198 3.795877 TCTTCTTTTGCTTTTGGGCTTG 58.204 40.909 0.00 0.00 0.00 4.01
1984 2199 4.486125 TTCTTCTTTTGCTTTTGGGCTT 57.514 36.364 0.00 0.00 0.00 4.35
1985 2200 4.191544 GTTTCTTCTTTTGCTTTTGGGCT 58.808 39.130 0.00 0.00 0.00 5.19
1986 2201 3.938334 TGTTTCTTCTTTTGCTTTTGGGC 59.062 39.130 0.00 0.00 0.00 5.36
1987 2202 6.493449 TTTGTTTCTTCTTTTGCTTTTGGG 57.507 33.333 0.00 0.00 0.00 4.12
1988 2203 6.469915 GCATTTGTTTCTTCTTTTGCTTTTGG 59.530 34.615 0.00 0.00 0.00 3.28
1989 2204 6.469915 GGCATTTGTTTCTTCTTTTGCTTTTG 59.530 34.615 0.00 0.00 0.00 2.44
1990 2205 6.150809 TGGCATTTGTTTCTTCTTTTGCTTTT 59.849 30.769 0.00 0.00 0.00 2.27
1991 2206 5.647225 TGGCATTTGTTTCTTCTTTTGCTTT 59.353 32.000 0.00 0.00 0.00 3.51
1992 2207 5.184711 TGGCATTTGTTTCTTCTTTTGCTT 58.815 33.333 0.00 0.00 0.00 3.91
1993 2208 4.768583 TGGCATTTGTTTCTTCTTTTGCT 58.231 34.783 0.00 0.00 0.00 3.91
1994 2209 5.163774 TGTTGGCATTTGTTTCTTCTTTTGC 60.164 36.000 0.00 0.00 0.00 3.68
1995 2210 6.419980 TGTTGGCATTTGTTTCTTCTTTTG 57.580 33.333 0.00 0.00 0.00 2.44
1996 2211 6.402011 CGTTGTTGGCATTTGTTTCTTCTTTT 60.402 34.615 0.00 0.00 0.00 2.27
1997 2212 5.063312 CGTTGTTGGCATTTGTTTCTTCTTT 59.937 36.000 0.00 0.00 0.00 2.52
1998 2213 4.566360 CGTTGTTGGCATTTGTTTCTTCTT 59.434 37.500 0.00 0.00 0.00 2.52
1999 2214 4.111916 CGTTGTTGGCATTTGTTTCTTCT 58.888 39.130 0.00 0.00 0.00 2.85
2000 2215 3.245048 CCGTTGTTGGCATTTGTTTCTTC 59.755 43.478 0.00 0.00 0.00 2.87
2001 2216 3.194062 CCGTTGTTGGCATTTGTTTCTT 58.806 40.909 0.00 0.00 0.00 2.52
2002 2217 2.820330 CCGTTGTTGGCATTTGTTTCT 58.180 42.857 0.00 0.00 0.00 2.52
2013 2228 2.954753 GACGAGCTGCCGTTGTTGG 61.955 63.158 15.31 0.00 43.49 3.77
2014 2229 1.771073 TTGACGAGCTGCCGTTGTTG 61.771 55.000 15.31 0.00 43.49 3.33
2015 2230 1.092921 TTTGACGAGCTGCCGTTGTT 61.093 50.000 15.31 0.00 43.49 2.83
2016 2231 1.498865 CTTTGACGAGCTGCCGTTGT 61.499 55.000 15.31 0.00 43.49 3.32
2017 2232 1.205064 CTTTGACGAGCTGCCGTTG 59.795 57.895 15.31 0.00 43.49 4.10
2018 2233 2.607892 GCTTTGACGAGCTGCCGTT 61.608 57.895 15.31 2.61 43.49 4.44
2019 2234 3.044305 GCTTTGACGAGCTGCCGT 61.044 61.111 14.35 14.35 46.43 5.68
2020 2235 4.139420 CGCTTTGACGAGCTGCCG 62.139 66.667 0.00 8.60 40.52 5.69
2021 2236 4.451652 GCGCTTTGACGAGCTGCC 62.452 66.667 0.00 0.00 40.52 4.85
2022 2237 4.783841 CGCGCTTTGACGAGCTGC 62.784 66.667 5.56 0.00 40.52 5.25
2023 2238 4.139420 CCGCGCTTTGACGAGCTG 62.139 66.667 5.56 0.00 40.52 4.24
2024 2239 3.649277 ATCCGCGCTTTGACGAGCT 62.649 57.895 5.56 0.00 40.52 4.09
2025 2240 3.188786 ATCCGCGCTTTGACGAGC 61.189 61.111 5.56 0.00 39.29 5.03
2026 2241 1.805539 TCATCCGCGCTTTGACGAG 60.806 57.895 5.56 0.00 34.06 4.18
2027 2242 2.092291 GTCATCCGCGCTTTGACGA 61.092 57.895 15.32 1.62 31.40 4.20
2028 2243 2.395690 GTCATCCGCGCTTTGACG 59.604 61.111 15.32 0.00 31.40 4.35
2029 2244 2.750888 GGGTCATCCGCGCTTTGAC 61.751 63.158 19.72 19.72 39.19 3.18
2030 2245 2.435938 GGGTCATCCGCGCTTTGA 60.436 61.111 5.56 2.44 33.83 2.69
2062 2277 0.602905 GTGGTGGTTTGTCTCCGGAG 60.603 60.000 26.32 26.32 0.00 4.63
2063 2278 1.338890 TGTGGTGGTTTGTCTCCGGA 61.339 55.000 2.93 2.93 0.00 5.14
2064 2279 0.464735 TTGTGGTGGTTTGTCTCCGG 60.465 55.000 0.00 0.00 0.00 5.14
2065 2280 0.661020 GTTGTGGTGGTTTGTCTCCG 59.339 55.000 0.00 0.00 0.00 4.63
2066 2281 1.029681 GGTTGTGGTGGTTTGTCTCC 58.970 55.000 0.00 0.00 0.00 3.71
2067 2282 1.029681 GGGTTGTGGTGGTTTGTCTC 58.970 55.000 0.00 0.00 0.00 3.36
2068 2283 0.750182 CGGGTTGTGGTGGTTTGTCT 60.750 55.000 0.00 0.00 0.00 3.41
2069 2284 0.748729 TCGGGTTGTGGTGGTTTGTC 60.749 55.000 0.00 0.00 0.00 3.18
2070 2285 0.750182 CTCGGGTTGTGGTGGTTTGT 60.750 55.000 0.00 0.00 0.00 2.83
2071 2286 1.452145 CCTCGGGTTGTGGTGGTTTG 61.452 60.000 0.00 0.00 0.00 2.93
2072 2287 1.152839 CCTCGGGTTGTGGTGGTTT 60.153 57.895 0.00 0.00 0.00 3.27
2073 2288 2.513895 CCTCGGGTTGTGGTGGTT 59.486 61.111 0.00 0.00 0.00 3.67
2074 2289 4.265056 GCCTCGGGTTGTGGTGGT 62.265 66.667 0.00 0.00 33.61 4.16
2075 2290 3.901797 GAGCCTCGGGTTGTGGTGG 62.902 68.421 0.00 0.00 33.61 4.61
2076 2291 2.358737 GAGCCTCGGGTTGTGGTG 60.359 66.667 0.00 0.00 33.61 4.17
2077 2292 3.637273 GGAGCCTCGGGTTGTGGT 61.637 66.667 0.00 0.00 33.61 4.16
2078 2293 4.760047 CGGAGCCTCGGGTTGTGG 62.760 72.222 0.00 0.00 0.00 4.17
2079 2294 2.907897 GATCGGAGCCTCGGGTTGTG 62.908 65.000 0.00 0.00 0.00 3.33
2080 2295 2.683933 ATCGGAGCCTCGGGTTGT 60.684 61.111 0.00 0.00 0.00 3.32
2081 2296 2.107141 GATCGGAGCCTCGGGTTG 59.893 66.667 0.00 0.00 0.00 3.77
2082 2297 2.042843 AGATCGGAGCCTCGGGTT 60.043 61.111 0.00 0.00 0.00 4.11
2083 2298 2.835431 CAGATCGGAGCCTCGGGT 60.835 66.667 0.00 0.00 0.00 5.28
2084 2299 3.610669 CCAGATCGGAGCCTCGGG 61.611 72.222 0.00 0.00 36.56 5.14
2085 2300 4.292178 GCCAGATCGGAGCCTCGG 62.292 72.222 7.64 0.00 36.56 4.63
2086 2301 3.531207 TGCCAGATCGGAGCCTCG 61.531 66.667 7.64 0.00 36.56 4.63
2087 2302 2.107953 GTGCCAGATCGGAGCCTC 59.892 66.667 7.64 0.00 36.56 4.70
2088 2303 3.842923 CGTGCCAGATCGGAGCCT 61.843 66.667 7.64 0.00 36.56 4.58
2089 2304 2.782222 TACGTGCCAGATCGGAGCC 61.782 63.158 0.00 0.00 36.56 4.70
2090 2305 1.589196 GTACGTGCCAGATCGGAGC 60.589 63.158 0.00 3.14 36.56 4.70
2091 2306 1.065928 GGTACGTGCCAGATCGGAG 59.934 63.158 18.66 1.68 36.56 4.63
2092 2307 1.252215 TTGGTACGTGCCAGATCGGA 61.252 55.000 24.68 6.94 40.01 4.55
2093 2308 0.806102 CTTGGTACGTGCCAGATCGG 60.806 60.000 24.68 10.55 40.01 4.18
2094 2309 1.421410 GCTTGGTACGTGCCAGATCG 61.421 60.000 24.68 15.27 40.01 3.69
2095 2310 0.391130 TGCTTGGTACGTGCCAGATC 60.391 55.000 24.68 17.26 40.01 2.75
2096 2311 0.391661 CTGCTTGGTACGTGCCAGAT 60.392 55.000 24.68 0.00 40.01 2.90
2097 2312 1.005037 CTGCTTGGTACGTGCCAGA 60.005 57.895 24.68 14.84 40.01 3.86
2098 2313 2.680913 GCTGCTTGGTACGTGCCAG 61.681 63.158 24.68 18.90 40.01 4.85
2099 2314 2.668212 GCTGCTTGGTACGTGCCA 60.668 61.111 22.40 22.40 36.62 4.92
2100 2315 2.668212 TGCTGCTTGGTACGTGCC 60.668 61.111 16.68 16.68 0.00 5.01
2101 2316 2.556287 GTGCTGCTTGGTACGTGC 59.444 61.111 0.00 0.00 0.00 5.34
2102 2317 0.884704 AAGGTGCTGCTTGGTACGTG 60.885 55.000 0.00 0.00 0.00 4.49
2103 2318 0.602905 GAAGGTGCTGCTTGGTACGT 60.603 55.000 0.00 0.00 0.00 3.57
2104 2319 0.602638 TGAAGGTGCTGCTTGGTACG 60.603 55.000 0.00 0.00 0.00 3.67
2105 2320 1.537202 CTTGAAGGTGCTGCTTGGTAC 59.463 52.381 0.00 0.00 0.00 3.34
2106 2321 1.419762 TCTTGAAGGTGCTGCTTGGTA 59.580 47.619 0.00 0.00 0.00 3.25
2107 2322 0.183492 TCTTGAAGGTGCTGCTTGGT 59.817 50.000 0.00 0.00 0.00 3.67
2108 2323 1.268899 CTTCTTGAAGGTGCTGCTTGG 59.731 52.381 0.00 0.00 0.00 3.61
2109 2324 1.268899 CCTTCTTGAAGGTGCTGCTTG 59.731 52.381 18.52 0.00 35.22 4.01
2110 2325 1.613836 CCTTCTTGAAGGTGCTGCTT 58.386 50.000 18.52 0.00 35.22 3.91
2111 2326 0.251077 CCCTTCTTGAAGGTGCTGCT 60.251 55.000 23.12 0.00 38.28 4.24
2112 2327 0.250901 TCCCTTCTTGAAGGTGCTGC 60.251 55.000 23.12 0.00 38.28 5.25
2113 2328 2.089980 CATCCCTTCTTGAAGGTGCTG 58.910 52.381 23.12 14.96 38.28 4.41
2114 2329 1.615384 GCATCCCTTCTTGAAGGTGCT 60.615 52.381 25.13 11.41 38.31 4.40
2115 2330 0.813821 GCATCCCTTCTTGAAGGTGC 59.186 55.000 23.12 22.07 38.28 5.01
2116 2331 1.089920 CGCATCCCTTCTTGAAGGTG 58.910 55.000 23.12 17.73 38.28 4.00
2117 2332 0.035056 CCGCATCCCTTCTTGAAGGT 60.035 55.000 23.12 7.50 38.28 3.50
2118 2333 1.379642 GCCGCATCCCTTCTTGAAGG 61.380 60.000 19.53 19.53 39.68 3.46
2119 2334 1.709147 CGCCGCATCCCTTCTTGAAG 61.709 60.000 3.55 3.55 0.00 3.02
2120 2335 1.745115 CGCCGCATCCCTTCTTGAA 60.745 57.895 0.00 0.00 0.00 2.69
2121 2336 2.125147 CGCCGCATCCCTTCTTGA 60.125 61.111 0.00 0.00 0.00 3.02
2122 2337 3.880846 GCGCCGCATCCCTTCTTG 61.881 66.667 3.15 0.00 0.00 3.02
2147 2362 4.385405 ACTCGTCTGGGCAGCAGC 62.385 66.667 0.00 0.00 41.10 5.25
2148 2363 2.125753 GACTCGTCTGGGCAGCAG 60.126 66.667 0.00 0.00 0.00 4.24
2149 2364 2.781431 TAGGACTCGTCTGGGCAGCA 62.781 60.000 0.00 0.00 0.00 4.41
2150 2365 2.010582 CTAGGACTCGTCTGGGCAGC 62.011 65.000 0.00 0.00 0.00 5.25
2151 2366 1.388065 CCTAGGACTCGTCTGGGCAG 61.388 65.000 1.05 0.00 0.00 4.85
2152 2367 1.379977 CCTAGGACTCGTCTGGGCA 60.380 63.158 1.05 0.00 0.00 5.36
2153 2368 2.128507 CCCTAGGACTCGTCTGGGC 61.129 68.421 11.48 0.00 32.34 5.36
2154 2369 0.324460 AACCCTAGGACTCGTCTGGG 60.324 60.000 11.48 15.95 39.01 4.45
2155 2370 1.477295 GAAACCCTAGGACTCGTCTGG 59.523 57.143 11.48 0.00 0.00 3.86
2156 2371 1.477295 GGAAACCCTAGGACTCGTCTG 59.523 57.143 11.48 0.00 0.00 3.51
2157 2372 1.849977 GGAAACCCTAGGACTCGTCT 58.150 55.000 11.48 0.00 0.00 4.18
2177 2392 4.760047 CTTCCCTCCACGTGCCGG 62.760 72.222 10.91 12.07 0.00 6.13
2178 2393 3.530910 AACTTCCCTCCACGTGCCG 62.531 63.158 10.91 2.42 0.00 5.69
2179 2394 1.966451 CAACTTCCCTCCACGTGCC 60.966 63.158 10.91 0.00 0.00 5.01
2180 2395 3.655481 CAACTTCCCTCCACGTGC 58.345 61.111 10.91 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.