Multiple sequence alignment - TraesCS7D01G320400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G320400 chr7D 100.000 2690 0 0 1 2690 410115685 410112996 0.000000e+00 4968
1 TraesCS7D01G320400 chr7D 79.182 831 136 26 1889 2690 171327609 171328431 2.360000e-150 542
2 TraesCS7D01G320400 chr7B 93.127 2386 106 15 337 2690 425409410 425411769 0.000000e+00 3445
3 TraesCS7D01G320400 chr7A 95.669 1316 43 7 545 1852 471817010 471818319 0.000000e+00 2102
4 TraesCS7D01G320400 chr7A 87.758 825 80 8 1878 2690 471818400 471819215 0.000000e+00 944
5 TraesCS7D01G320400 chr7A 90.358 363 29 5 2 360 471805162 471805522 3.130000e-129 472
6 TraesCS7D01G320400 chr5A 79.680 812 129 28 1901 2690 639085611 639086408 1.090000e-153 553
7 TraesCS7D01G320400 chr3A 79.515 825 129 29 1887 2689 262526573 262527379 3.910000e-153 551
8 TraesCS7D01G320400 chr3A 84.889 225 31 2 14 235 694018152 694017928 9.690000e-55 224
9 TraesCS7D01G320400 chr3B 80.972 741 100 22 1974 2690 275917035 275917758 1.410000e-152 549
10 TraesCS7D01G320400 chr3B 85.088 228 30 2 13 239 59683391 59683167 2.080000e-56 230
11 TraesCS7D01G320400 chr3B 77.352 287 57 8 1892 2173 257315365 257315648 2.140000e-36 163
12 TraesCS7D01G320400 chr6B 79.196 846 130 31 1878 2690 151159036 151158204 1.820000e-151 545
13 TraesCS7D01G320400 chr3D 79.213 813 134 25 1901 2690 192055169 192054369 1.420000e-147 532
14 TraesCS7D01G320400 chr3D 85.294 238 30 4 1 235 489528140 489528375 9.620000e-60 241
15 TraesCS7D01G320400 chr3D 85.903 227 31 1 13 238 558086077 558085851 9.620000e-60 241
16 TraesCS7D01G320400 chr3D 76.590 346 66 14 1878 2214 179201808 179202147 2.750000e-40 176
17 TraesCS7D01G320400 chr4B 79.093 507 68 26 1878 2358 42230279 42230773 5.590000e-82 315
18 TraesCS7D01G320400 chr1D 85.965 228 30 2 13 238 296632159 296631932 2.680000e-60 243
19 TraesCS7D01G320400 chr5D 85.463 227 31 2 15 239 25267053 25267279 4.480000e-58 235
20 TraesCS7D01G320400 chr5D 83.966 237 35 3 1 235 454726101 454725866 9.690000e-55 224
21 TraesCS7D01G320400 chr5D 82.422 256 41 4 1900 2154 510827481 510827229 1.250000e-53 220
22 TraesCS7D01G320400 chr2D 83.544 237 35 4 1 235 458731398 458731164 4.510000e-53 219
23 TraesCS7D01G320400 chr5B 80.800 250 44 4 1906 2154 641760458 641760212 2.730000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G320400 chr7D 410112996 410115685 2689 True 4968 4968 100.0000 1 2690 1 chr7D.!!$R1 2689
1 TraesCS7D01G320400 chr7D 171327609 171328431 822 False 542 542 79.1820 1889 2690 1 chr7D.!!$F1 801
2 TraesCS7D01G320400 chr7B 425409410 425411769 2359 False 3445 3445 93.1270 337 2690 1 chr7B.!!$F1 2353
3 TraesCS7D01G320400 chr7A 471817010 471819215 2205 False 1523 2102 91.7135 545 2690 2 chr7A.!!$F2 2145
4 TraesCS7D01G320400 chr5A 639085611 639086408 797 False 553 553 79.6800 1901 2690 1 chr5A.!!$F1 789
5 TraesCS7D01G320400 chr3A 262526573 262527379 806 False 551 551 79.5150 1887 2689 1 chr3A.!!$F1 802
6 TraesCS7D01G320400 chr3B 275917035 275917758 723 False 549 549 80.9720 1974 2690 1 chr3B.!!$F2 716
7 TraesCS7D01G320400 chr6B 151158204 151159036 832 True 545 545 79.1960 1878 2690 1 chr6B.!!$R1 812
8 TraesCS7D01G320400 chr3D 192054369 192055169 800 True 532 532 79.2130 1901 2690 1 chr3D.!!$R1 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 516 0.036732 TCTTTGCTCCAATGGCGACT 59.963 50.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2398 2545 0.172352 TTCGATTTGCCAAATCCGCC 59.828 50.0 21.27 1.17 43.39 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.667539 TTTTCCTTTGATGGTTGTTGTGA 57.332 34.783 0.00 0.00 0.00 3.58
37 38 5.867903 TTTCCTTTGATGGTTGTTGTGAT 57.132 34.783 0.00 0.00 0.00 3.06
38 39 4.852134 TCCTTTGATGGTTGTTGTGATG 57.148 40.909 0.00 0.00 0.00 3.07
39 40 3.573538 TCCTTTGATGGTTGTTGTGATGG 59.426 43.478 0.00 0.00 0.00 3.51
40 41 3.321682 CCTTTGATGGTTGTTGTGATGGT 59.678 43.478 0.00 0.00 0.00 3.55
41 42 4.300803 CTTTGATGGTTGTTGTGATGGTG 58.699 43.478 0.00 0.00 0.00 4.17
42 43 1.612950 TGATGGTTGTTGTGATGGTGC 59.387 47.619 0.00 0.00 0.00 5.01
43 44 0.597568 ATGGTTGTTGTGATGGTGCG 59.402 50.000 0.00 0.00 0.00 5.34
44 45 0.464554 TGGTTGTTGTGATGGTGCGA 60.465 50.000 0.00 0.00 0.00 5.10
45 46 0.238289 GGTTGTTGTGATGGTGCGAG 59.762 55.000 0.00 0.00 0.00 5.03
46 47 1.225855 GTTGTTGTGATGGTGCGAGA 58.774 50.000 0.00 0.00 0.00 4.04
47 48 1.195448 GTTGTTGTGATGGTGCGAGAG 59.805 52.381 0.00 0.00 0.00 3.20
48 49 0.320683 TGTTGTGATGGTGCGAGAGG 60.321 55.000 0.00 0.00 0.00 3.69
49 50 1.375908 TTGTGATGGTGCGAGAGGC 60.376 57.895 0.00 0.00 43.96 4.70
58 59 4.057428 GCGAGAGGCAGGTGACGT 62.057 66.667 0.00 0.00 42.87 4.34
59 60 2.126307 CGAGAGGCAGGTGACGTG 60.126 66.667 0.00 0.12 0.00 4.49
60 61 2.433318 GAGAGGCAGGTGACGTGC 60.433 66.667 20.81 20.81 40.42 5.34
61 62 3.226429 GAGAGGCAGGTGACGTGCA 62.226 63.158 28.20 0.00 43.12 4.57
62 63 2.046892 GAGGCAGGTGACGTGCAT 60.047 61.111 28.20 23.40 43.12 3.96
63 64 1.672356 GAGGCAGGTGACGTGCATT 60.672 57.895 28.20 17.34 43.12 3.56
64 65 1.915614 GAGGCAGGTGACGTGCATTG 61.916 60.000 28.20 0.00 43.12 2.82
65 66 2.562912 GCAGGTGACGTGCATTGG 59.437 61.111 23.51 0.00 40.86 3.16
66 67 2.260869 GCAGGTGACGTGCATTGGT 61.261 57.895 23.51 0.00 40.86 3.67
67 68 1.575922 CAGGTGACGTGCATTGGTG 59.424 57.895 0.00 0.00 0.00 4.17
68 69 1.148273 AGGTGACGTGCATTGGTGT 59.852 52.632 0.00 0.00 0.00 4.16
69 70 0.884704 AGGTGACGTGCATTGGTGTC 60.885 55.000 0.00 0.00 0.00 3.67
70 71 1.163420 GGTGACGTGCATTGGTGTCA 61.163 55.000 0.00 0.00 38.91 3.58
71 72 0.660488 GTGACGTGCATTGGTGTCAA 59.340 50.000 0.00 0.00 42.43 3.18
72 73 0.943673 TGACGTGCATTGGTGTCAAG 59.056 50.000 0.00 0.00 38.32 3.02
73 74 0.385974 GACGTGCATTGGTGTCAAGC 60.386 55.000 0.00 0.00 36.19 4.01
74 75 0.819259 ACGTGCATTGGTGTCAAGCT 60.819 50.000 0.00 0.00 36.19 3.74
75 76 0.110056 CGTGCATTGGTGTCAAGCTC 60.110 55.000 0.00 0.00 36.19 4.09
76 77 0.953727 GTGCATTGGTGTCAAGCTCA 59.046 50.000 0.00 0.00 36.19 4.26
77 78 1.068748 GTGCATTGGTGTCAAGCTCAG 60.069 52.381 0.00 0.00 36.19 3.35
78 79 1.202794 TGCATTGGTGTCAAGCTCAGA 60.203 47.619 0.00 0.00 36.19 3.27
79 80 2.089980 GCATTGGTGTCAAGCTCAGAT 58.910 47.619 0.00 0.00 36.19 2.90
80 81 2.159421 GCATTGGTGTCAAGCTCAGATG 60.159 50.000 0.00 0.00 36.19 2.90
81 82 3.340928 CATTGGTGTCAAGCTCAGATGA 58.659 45.455 0.00 0.00 36.19 2.92
82 83 3.708403 TTGGTGTCAAGCTCAGATGAT 57.292 42.857 0.00 0.00 0.00 2.45
83 84 3.708403 TGGTGTCAAGCTCAGATGATT 57.292 42.857 0.00 0.00 0.00 2.57
84 85 3.603532 TGGTGTCAAGCTCAGATGATTC 58.396 45.455 0.00 0.00 0.00 2.52
85 86 3.262660 TGGTGTCAAGCTCAGATGATTCT 59.737 43.478 0.00 0.00 0.00 2.40
86 87 4.260170 GGTGTCAAGCTCAGATGATTCTT 58.740 43.478 0.00 0.00 0.00 2.52
87 88 4.332268 GGTGTCAAGCTCAGATGATTCTTC 59.668 45.833 0.00 0.00 0.00 2.87
88 89 4.032672 GTGTCAAGCTCAGATGATTCTTCG 59.967 45.833 0.00 0.00 0.00 3.79
89 90 3.555139 GTCAAGCTCAGATGATTCTTCGG 59.445 47.826 0.00 0.00 0.00 4.30
90 91 3.196469 TCAAGCTCAGATGATTCTTCGGT 59.804 43.478 0.00 0.00 0.00 4.69
91 92 3.451141 AGCTCAGATGATTCTTCGGTC 57.549 47.619 0.00 0.00 0.00 4.79
92 93 3.030291 AGCTCAGATGATTCTTCGGTCT 58.970 45.455 0.00 0.00 0.00 3.85
93 94 3.450457 AGCTCAGATGATTCTTCGGTCTT 59.550 43.478 0.00 0.00 0.00 3.01
94 95 3.555139 GCTCAGATGATTCTTCGGTCTTG 59.445 47.826 0.90 0.00 0.00 3.02
95 96 4.753233 CTCAGATGATTCTTCGGTCTTGT 58.247 43.478 0.90 0.00 0.00 3.16
96 97 5.152623 TCAGATGATTCTTCGGTCTTGTT 57.847 39.130 0.90 0.00 0.00 2.83
97 98 5.551233 TCAGATGATTCTTCGGTCTTGTTT 58.449 37.500 0.90 0.00 0.00 2.83
98 99 5.409520 TCAGATGATTCTTCGGTCTTGTTTG 59.590 40.000 0.90 0.00 0.00 2.93
99 100 5.180117 CAGATGATTCTTCGGTCTTGTTTGT 59.820 40.000 0.00 0.00 0.00 2.83
100 101 6.368791 CAGATGATTCTTCGGTCTTGTTTGTA 59.631 38.462 0.00 0.00 0.00 2.41
101 102 6.934645 AGATGATTCTTCGGTCTTGTTTGTAA 59.065 34.615 0.00 0.00 0.00 2.41
102 103 7.607991 AGATGATTCTTCGGTCTTGTTTGTAAT 59.392 33.333 0.00 0.00 0.00 1.89
103 104 7.504924 TGATTCTTCGGTCTTGTTTGTAATT 57.495 32.000 0.00 0.00 0.00 1.40
104 105 7.936584 TGATTCTTCGGTCTTGTTTGTAATTT 58.063 30.769 0.00 0.00 0.00 1.82
105 106 8.410141 TGATTCTTCGGTCTTGTTTGTAATTTT 58.590 29.630 0.00 0.00 0.00 1.82
106 107 9.887406 GATTCTTCGGTCTTGTTTGTAATTTTA 57.113 29.630 0.00 0.00 0.00 1.52
107 108 9.673454 ATTCTTCGGTCTTGTTTGTAATTTTAC 57.327 29.630 0.00 0.00 0.00 2.01
108 109 8.441312 TCTTCGGTCTTGTTTGTAATTTTACT 57.559 30.769 2.45 0.00 34.77 2.24
109 110 8.895737 TCTTCGGTCTTGTTTGTAATTTTACTT 58.104 29.630 2.45 0.00 34.77 2.24
110 111 9.166126 CTTCGGTCTTGTTTGTAATTTTACTTC 57.834 33.333 2.45 0.00 34.77 3.01
111 112 8.441312 TCGGTCTTGTTTGTAATTTTACTTCT 57.559 30.769 2.45 0.00 34.77 2.85
112 113 8.553696 TCGGTCTTGTTTGTAATTTTACTTCTC 58.446 33.333 2.45 0.00 34.77 2.87
113 114 8.339714 CGGTCTTGTTTGTAATTTTACTTCTCA 58.660 33.333 2.45 0.00 34.77 3.27
117 118 9.329913 CTTGTTTGTAATTTTACTTCTCATCGG 57.670 33.333 2.45 0.00 34.77 4.18
118 119 7.302524 TGTTTGTAATTTTACTTCTCATCGGC 58.697 34.615 2.45 0.00 34.77 5.54
119 120 5.712217 TGTAATTTTACTTCTCATCGGCG 57.288 39.130 0.00 0.00 34.77 6.46
120 121 5.172934 TGTAATTTTACTTCTCATCGGCGT 58.827 37.500 6.85 0.00 34.77 5.68
121 122 5.640357 TGTAATTTTACTTCTCATCGGCGTT 59.360 36.000 6.85 0.00 34.77 4.84
122 123 4.859629 ATTTTACTTCTCATCGGCGTTC 57.140 40.909 6.85 0.00 0.00 3.95
123 124 2.288961 TTACTTCTCATCGGCGTTCC 57.711 50.000 6.85 0.00 0.00 3.62
124 125 1.471119 TACTTCTCATCGGCGTTCCT 58.529 50.000 6.85 0.00 0.00 3.36
125 126 0.608640 ACTTCTCATCGGCGTTCCTT 59.391 50.000 6.85 0.00 0.00 3.36
126 127 1.002087 ACTTCTCATCGGCGTTCCTTT 59.998 47.619 6.85 0.00 0.00 3.11
127 128 1.394917 CTTCTCATCGGCGTTCCTTTG 59.605 52.381 6.85 0.00 0.00 2.77
128 129 0.320374 TCTCATCGGCGTTCCTTTGT 59.680 50.000 6.85 0.00 0.00 2.83
129 130 0.443869 CTCATCGGCGTTCCTTTGTG 59.556 55.000 6.85 0.00 0.00 3.33
130 131 1.154225 CATCGGCGTTCCTTTGTGC 60.154 57.895 6.85 0.00 0.00 4.57
131 132 1.599518 ATCGGCGTTCCTTTGTGCA 60.600 52.632 6.85 0.00 0.00 4.57
132 133 0.960364 ATCGGCGTTCCTTTGTGCAT 60.960 50.000 6.85 0.00 0.00 3.96
133 134 0.320858 TCGGCGTTCCTTTGTGCATA 60.321 50.000 6.85 0.00 0.00 3.14
134 135 0.096976 CGGCGTTCCTTTGTGCATAG 59.903 55.000 0.00 0.00 0.00 2.23
135 136 0.451783 GGCGTTCCTTTGTGCATAGG 59.548 55.000 6.22 6.22 0.00 2.57
136 137 0.179163 GCGTTCCTTTGTGCATAGGC 60.179 55.000 7.42 0.00 41.68 3.93
137 138 1.453155 CGTTCCTTTGTGCATAGGCT 58.547 50.000 0.00 0.00 41.91 4.58
138 139 2.627945 CGTTCCTTTGTGCATAGGCTA 58.372 47.619 0.00 0.00 41.91 3.93
139 140 2.609459 CGTTCCTTTGTGCATAGGCTAG 59.391 50.000 0.00 0.00 41.91 3.42
140 141 3.610911 GTTCCTTTGTGCATAGGCTAGT 58.389 45.455 0.00 0.00 41.91 2.57
141 142 3.266510 TCCTTTGTGCATAGGCTAGTG 57.733 47.619 0.00 0.26 41.91 2.74
142 143 2.571653 TCCTTTGTGCATAGGCTAGTGT 59.428 45.455 0.00 0.00 41.91 3.55
143 144 3.009033 TCCTTTGTGCATAGGCTAGTGTT 59.991 43.478 0.00 0.00 41.91 3.32
144 145 3.375299 CCTTTGTGCATAGGCTAGTGTTC 59.625 47.826 0.00 0.00 41.91 3.18
145 146 3.981071 TTGTGCATAGGCTAGTGTTCT 57.019 42.857 0.00 0.00 41.91 3.01
146 147 5.414789 TTTGTGCATAGGCTAGTGTTCTA 57.585 39.130 0.00 0.00 41.91 2.10
147 148 4.386867 TGTGCATAGGCTAGTGTTCTAC 57.613 45.455 0.00 0.00 41.91 2.59
148 149 4.023980 TGTGCATAGGCTAGTGTTCTACT 58.976 43.478 0.00 0.00 41.91 2.57
149 150 4.142160 TGTGCATAGGCTAGTGTTCTACTG 60.142 45.833 0.00 0.00 41.91 2.74
150 151 4.023980 TGCATAGGCTAGTGTTCTACTGT 58.976 43.478 0.00 0.00 41.91 3.55
151 152 4.098044 TGCATAGGCTAGTGTTCTACTGTC 59.902 45.833 0.00 0.00 41.91 3.51
152 153 4.339814 GCATAGGCTAGTGTTCTACTGTCT 59.660 45.833 0.00 0.00 40.65 3.41
153 154 5.163499 GCATAGGCTAGTGTTCTACTGTCTT 60.163 44.000 0.00 0.00 40.65 3.01
154 155 6.628398 GCATAGGCTAGTGTTCTACTGTCTTT 60.628 42.308 0.00 0.00 40.65 2.52
155 156 5.810080 AGGCTAGTGTTCTACTGTCTTTT 57.190 39.130 0.00 0.00 40.65 2.27
156 157 6.176014 AGGCTAGTGTTCTACTGTCTTTTT 57.824 37.500 0.00 0.00 40.65 1.94
157 158 7.299246 AGGCTAGTGTTCTACTGTCTTTTTA 57.701 36.000 0.00 0.00 40.65 1.52
158 159 7.379750 AGGCTAGTGTTCTACTGTCTTTTTAG 58.620 38.462 0.00 0.00 40.65 1.85
159 160 7.015389 AGGCTAGTGTTCTACTGTCTTTTTAGT 59.985 37.037 0.00 0.00 40.65 2.24
160 161 7.656542 GGCTAGTGTTCTACTGTCTTTTTAGTT 59.343 37.037 0.00 0.00 40.65 2.24
161 162 9.043079 GCTAGTGTTCTACTGTCTTTTTAGTTT 57.957 33.333 0.00 0.00 40.65 2.66
164 165 8.182227 AGTGTTCTACTGTCTTTTTAGTTTTGC 58.818 33.333 0.00 0.00 38.49 3.68
165 166 7.431376 GTGTTCTACTGTCTTTTTAGTTTTGCC 59.569 37.037 0.00 0.00 0.00 4.52
166 167 7.121463 TGTTCTACTGTCTTTTTAGTTTTGCCA 59.879 33.333 0.00 0.00 0.00 4.92
167 168 7.259290 TCTACTGTCTTTTTAGTTTTGCCAG 57.741 36.000 0.00 0.00 0.00 4.85
168 169 5.262588 ACTGTCTTTTTAGTTTTGCCAGG 57.737 39.130 0.00 0.00 0.00 4.45
169 170 4.709886 ACTGTCTTTTTAGTTTTGCCAGGT 59.290 37.500 0.00 0.00 0.00 4.00
170 171 5.163550 ACTGTCTTTTTAGTTTTGCCAGGTC 60.164 40.000 0.00 0.00 0.00 3.85
171 172 4.201970 TGTCTTTTTAGTTTTGCCAGGTCG 60.202 41.667 0.00 0.00 0.00 4.79
172 173 4.035909 GTCTTTTTAGTTTTGCCAGGTCGA 59.964 41.667 0.00 0.00 0.00 4.20
173 174 4.825085 TCTTTTTAGTTTTGCCAGGTCGAT 59.175 37.500 0.00 0.00 0.00 3.59
174 175 5.998981 TCTTTTTAGTTTTGCCAGGTCGATA 59.001 36.000 0.00 0.00 0.00 2.92
175 176 6.657541 TCTTTTTAGTTTTGCCAGGTCGATAT 59.342 34.615 0.00 0.00 0.00 1.63
176 177 5.811399 TTTAGTTTTGCCAGGTCGATATG 57.189 39.130 0.00 0.00 0.00 1.78
177 178 3.350219 AGTTTTGCCAGGTCGATATGT 57.650 42.857 0.00 0.00 0.00 2.29
178 179 4.481368 AGTTTTGCCAGGTCGATATGTA 57.519 40.909 0.00 0.00 0.00 2.29
179 180 4.189231 AGTTTTGCCAGGTCGATATGTAC 58.811 43.478 0.00 0.00 0.00 2.90
180 181 2.502213 TTGCCAGGTCGATATGTACG 57.498 50.000 0.00 0.00 0.00 3.67
181 182 1.395635 TGCCAGGTCGATATGTACGT 58.604 50.000 0.00 0.00 0.00 3.57
182 183 1.066454 TGCCAGGTCGATATGTACGTG 59.934 52.381 0.00 0.00 0.00 4.49
183 184 1.335810 GCCAGGTCGATATGTACGTGA 59.664 52.381 0.00 0.00 34.28 4.35
184 185 2.857489 GCCAGGTCGATATGTACGTGAC 60.857 54.545 0.00 0.00 34.28 3.67
185 186 2.617308 CCAGGTCGATATGTACGTGACT 59.383 50.000 0.00 0.00 34.28 3.41
186 187 3.066342 CCAGGTCGATATGTACGTGACTT 59.934 47.826 0.00 0.00 34.28 3.01
187 188 4.035684 CAGGTCGATATGTACGTGACTTG 58.964 47.826 0.00 0.00 34.28 3.16
188 189 3.693085 AGGTCGATATGTACGTGACTTGT 59.307 43.478 0.00 0.00 0.00 3.16
189 190 4.877823 AGGTCGATATGTACGTGACTTGTA 59.122 41.667 0.00 0.00 0.00 2.41
190 191 5.530171 AGGTCGATATGTACGTGACTTGTAT 59.470 40.000 0.00 0.00 0.00 2.29
191 192 6.039047 AGGTCGATATGTACGTGACTTGTATT 59.961 38.462 0.00 0.00 0.00 1.89
192 193 7.227314 AGGTCGATATGTACGTGACTTGTATTA 59.773 37.037 0.00 0.00 0.00 0.98
193 194 8.019669 GGTCGATATGTACGTGACTTGTATTAT 58.980 37.037 0.00 0.00 0.00 1.28
194 195 8.838009 GTCGATATGTACGTGACTTGTATTATG 58.162 37.037 0.00 0.00 0.00 1.90
195 196 8.776470 TCGATATGTACGTGACTTGTATTATGA 58.224 33.333 0.00 0.00 0.00 2.15
196 197 9.556030 CGATATGTACGTGACTTGTATTATGAT 57.444 33.333 0.00 0.00 0.00 2.45
198 199 9.856488 ATATGTACGTGACTTGTATTATGATCC 57.144 33.333 0.00 0.00 0.00 3.36
199 200 7.342769 TGTACGTGACTTGTATTATGATCCT 57.657 36.000 0.00 0.00 0.00 3.24
200 201 7.778083 TGTACGTGACTTGTATTATGATCCTT 58.222 34.615 0.00 0.00 0.00 3.36
201 202 8.905850 TGTACGTGACTTGTATTATGATCCTTA 58.094 33.333 0.00 0.00 0.00 2.69
202 203 9.909644 GTACGTGACTTGTATTATGATCCTTAT 57.090 33.333 0.00 0.00 0.00 1.73
203 204 8.818141 ACGTGACTTGTATTATGATCCTTATG 57.182 34.615 0.00 0.00 0.00 1.90
204 205 8.638873 ACGTGACTTGTATTATGATCCTTATGA 58.361 33.333 0.00 0.00 0.00 2.15
205 206 9.645059 CGTGACTTGTATTATGATCCTTATGAT 57.355 33.333 0.00 0.00 36.01 2.45
253 254 4.718940 AAAGAATTGATTGGCGTTAGGG 57.281 40.909 0.00 0.00 0.00 3.53
254 255 3.644966 AGAATTGATTGGCGTTAGGGA 57.355 42.857 0.00 0.00 0.00 4.20
255 256 3.545703 AGAATTGATTGGCGTTAGGGAG 58.454 45.455 0.00 0.00 0.00 4.30
256 257 3.199946 AGAATTGATTGGCGTTAGGGAGA 59.800 43.478 0.00 0.00 0.00 3.71
257 258 2.691409 TTGATTGGCGTTAGGGAGAG 57.309 50.000 0.00 0.00 0.00 3.20
258 259 0.830648 TGATTGGCGTTAGGGAGAGG 59.169 55.000 0.00 0.00 0.00 3.69
259 260 1.120530 GATTGGCGTTAGGGAGAGGA 58.879 55.000 0.00 0.00 0.00 3.71
260 261 0.831307 ATTGGCGTTAGGGAGAGGAC 59.169 55.000 0.00 0.00 0.00 3.85
261 262 1.262640 TTGGCGTTAGGGAGAGGACC 61.263 60.000 0.00 0.00 0.00 4.46
262 263 2.783288 GGCGTTAGGGAGAGGACCG 61.783 68.421 0.00 0.00 0.00 4.79
263 264 2.783288 GCGTTAGGGAGAGGACCGG 61.783 68.421 0.00 0.00 0.00 5.28
264 265 1.077212 CGTTAGGGAGAGGACCGGA 60.077 63.158 9.46 0.00 0.00 5.14
265 266 1.382692 CGTTAGGGAGAGGACCGGAC 61.383 65.000 9.46 0.00 0.00 4.79
266 267 1.042003 GTTAGGGAGAGGACCGGACC 61.042 65.000 15.76 15.76 0.00 4.46
267 268 2.234246 TTAGGGAGAGGACCGGACCC 62.234 65.000 19.83 14.06 40.71 4.46
268 269 4.393778 GGGAGAGGACCGGACCCA 62.394 72.222 19.83 0.00 40.20 4.51
269 270 3.075641 GGAGAGGACCGGACCCAC 61.076 72.222 19.83 13.76 0.00 4.61
270 271 3.075641 GAGAGGACCGGACCCACC 61.076 72.222 19.83 9.22 0.00 4.61
271 272 4.716977 AGAGGACCGGACCCACCC 62.717 72.222 19.83 6.73 34.64 4.61
278 279 3.246112 CGGACCCACCCACCTGAA 61.246 66.667 0.00 0.00 34.64 3.02
279 280 2.824880 CGGACCCACCCACCTGAAA 61.825 63.158 0.00 0.00 34.64 2.69
280 281 1.774300 GGACCCACCCACCTGAAAT 59.226 57.895 0.00 0.00 0.00 2.17
281 282 0.114364 GGACCCACCCACCTGAAATT 59.886 55.000 0.00 0.00 0.00 1.82
282 283 1.545841 GACCCACCCACCTGAAATTC 58.454 55.000 0.00 0.00 0.00 2.17
283 284 0.251165 ACCCACCCACCTGAAATTCG 60.251 55.000 0.00 0.00 0.00 3.34
284 285 0.965363 CCCACCCACCTGAAATTCGG 60.965 60.000 0.00 0.00 0.00 4.30
286 287 0.037590 CACCCACCTGAAATTCGGGA 59.962 55.000 26.32 0.00 45.95 5.14
287 288 0.328258 ACCCACCTGAAATTCGGGAG 59.672 55.000 26.32 18.35 45.95 4.30
288 289 3.175133 CCACCTGAAATTCGGGAGG 57.825 57.895 26.32 23.11 45.95 4.30
289 290 0.394352 CCACCTGAAATTCGGGAGGG 60.394 60.000 26.32 21.08 46.20 4.30
290 291 0.394352 CACCTGAAATTCGGGAGGGG 60.394 60.000 26.32 6.78 45.95 4.79
291 292 1.227383 CCTGAAATTCGGGAGGGGG 59.773 63.158 15.61 0.00 45.95 5.40
308 309 3.214696 GGGGGATGAGTGGATTAGTTG 57.785 52.381 0.00 0.00 0.00 3.16
309 310 2.158608 GGGGGATGAGTGGATTAGTTGG 60.159 54.545 0.00 0.00 0.00 3.77
310 311 2.777692 GGGGATGAGTGGATTAGTTGGA 59.222 50.000 0.00 0.00 0.00 3.53
311 312 3.202151 GGGGATGAGTGGATTAGTTGGAA 59.798 47.826 0.00 0.00 0.00 3.53
312 313 4.455606 GGGATGAGTGGATTAGTTGGAAG 58.544 47.826 0.00 0.00 0.00 3.46
313 314 4.455606 GGATGAGTGGATTAGTTGGAAGG 58.544 47.826 0.00 0.00 0.00 3.46
314 315 4.080299 GGATGAGTGGATTAGTTGGAAGGT 60.080 45.833 0.00 0.00 0.00 3.50
315 316 4.993705 TGAGTGGATTAGTTGGAAGGTT 57.006 40.909 0.00 0.00 0.00 3.50
316 317 6.352737 GGATGAGTGGATTAGTTGGAAGGTTA 60.353 42.308 0.00 0.00 0.00 2.85
317 318 5.801380 TGAGTGGATTAGTTGGAAGGTTAC 58.199 41.667 0.00 0.00 0.00 2.50
318 319 4.828829 AGTGGATTAGTTGGAAGGTTACG 58.171 43.478 0.00 0.00 0.00 3.18
319 320 4.285260 AGTGGATTAGTTGGAAGGTTACGT 59.715 41.667 0.00 0.00 0.00 3.57
320 321 4.999311 GTGGATTAGTTGGAAGGTTACGTT 59.001 41.667 0.00 0.00 0.00 3.99
321 322 6.014327 AGTGGATTAGTTGGAAGGTTACGTTA 60.014 38.462 0.00 0.00 0.00 3.18
322 323 6.650390 GTGGATTAGTTGGAAGGTTACGTTAA 59.350 38.462 0.00 0.00 0.00 2.01
323 324 6.650390 TGGATTAGTTGGAAGGTTACGTTAAC 59.350 38.462 0.00 0.00 37.94 2.01
324 325 6.875726 GGATTAGTTGGAAGGTTACGTTAACT 59.124 38.462 3.71 9.77 38.68 2.24
325 326 7.388776 GGATTAGTTGGAAGGTTACGTTAACTT 59.611 37.037 4.21 4.21 38.68 2.66
326 327 9.423061 GATTAGTTGGAAGGTTACGTTAACTTA 57.577 33.333 4.60 0.00 38.68 2.24
327 328 8.587952 TTAGTTGGAAGGTTACGTTAACTTAC 57.412 34.615 7.64 7.64 38.68 2.34
328 329 5.691754 AGTTGGAAGGTTACGTTAACTTACG 59.308 40.000 9.84 0.00 46.52 3.18
341 342 7.975866 CGTTAACTTACGTAGGTGTATGATT 57.024 36.000 11.45 0.00 36.80 2.57
342 343 8.398491 CGTTAACTTACGTAGGTGTATGATTT 57.602 34.615 11.45 0.00 36.80 2.17
343 344 8.863049 CGTTAACTTACGTAGGTGTATGATTTT 58.137 33.333 11.45 0.00 36.80 1.82
344 345 9.962759 GTTAACTTACGTAGGTGTATGATTTTG 57.037 33.333 11.45 0.00 0.00 2.44
418 434 1.676006 CAGGTGAAAGTGCGAAACCTT 59.324 47.619 0.00 0.00 39.24 3.50
426 442 2.294074 AGTGCGAAACCTTGTGCTTTA 58.706 42.857 0.00 0.00 0.00 1.85
427 443 2.884639 AGTGCGAAACCTTGTGCTTTAT 59.115 40.909 0.00 0.00 0.00 1.40
428 444 3.317993 AGTGCGAAACCTTGTGCTTTATT 59.682 39.130 0.00 0.00 0.00 1.40
429 445 4.517453 AGTGCGAAACCTTGTGCTTTATTA 59.483 37.500 0.00 0.00 0.00 0.98
430 446 5.183140 AGTGCGAAACCTTGTGCTTTATTAT 59.817 36.000 0.00 0.00 0.00 1.28
431 447 5.511729 GTGCGAAACCTTGTGCTTTATTATC 59.488 40.000 0.00 0.00 0.00 1.75
432 448 5.182190 TGCGAAACCTTGTGCTTTATTATCA 59.818 36.000 0.00 0.00 0.00 2.15
433 449 6.090129 GCGAAACCTTGTGCTTTATTATCAA 58.910 36.000 0.00 0.00 0.00 2.57
434 450 6.033513 GCGAAACCTTGTGCTTTATTATCAAC 59.966 38.462 0.00 0.00 0.00 3.18
435 451 6.526674 CGAAACCTTGTGCTTTATTATCAACC 59.473 38.462 0.00 0.00 0.00 3.77
436 452 5.560966 ACCTTGTGCTTTATTATCAACCG 57.439 39.130 0.00 0.00 0.00 4.44
454 480 1.516161 CGGGCATGATGATCATTCGT 58.484 50.000 10.14 2.11 34.28 3.85
466 492 2.047274 ATTCGTCAGCGTGTGGGG 60.047 61.111 0.00 0.00 39.49 4.96
479 505 2.161609 CGTGTGGGGTTTATCTTTGCTC 59.838 50.000 0.00 0.00 0.00 4.26
480 506 2.492088 GTGTGGGGTTTATCTTTGCTCC 59.508 50.000 0.00 0.00 0.00 4.70
481 507 2.109128 TGTGGGGTTTATCTTTGCTCCA 59.891 45.455 0.00 0.00 0.00 3.86
482 508 3.161866 GTGGGGTTTATCTTTGCTCCAA 58.838 45.455 0.00 0.00 0.00 3.53
483 509 3.769300 GTGGGGTTTATCTTTGCTCCAAT 59.231 43.478 0.00 0.00 0.00 3.16
484 510 3.768757 TGGGGTTTATCTTTGCTCCAATG 59.231 43.478 0.00 0.00 0.00 2.82
485 511 3.132824 GGGGTTTATCTTTGCTCCAATGG 59.867 47.826 0.00 0.00 0.00 3.16
486 512 3.430790 GGGTTTATCTTTGCTCCAATGGC 60.431 47.826 0.00 0.00 0.00 4.40
487 513 3.438360 GTTTATCTTTGCTCCAATGGCG 58.562 45.455 0.00 0.00 0.00 5.69
488 514 2.708216 TATCTTTGCTCCAATGGCGA 57.292 45.000 0.00 0.00 0.00 5.54
489 515 1.098050 ATCTTTGCTCCAATGGCGAC 58.902 50.000 0.00 0.00 0.00 5.19
490 516 0.036732 TCTTTGCTCCAATGGCGACT 59.963 50.000 0.00 0.00 0.00 4.18
491 517 0.883833 CTTTGCTCCAATGGCGACTT 59.116 50.000 0.00 0.00 0.00 3.01
492 518 2.083774 CTTTGCTCCAATGGCGACTTA 58.916 47.619 0.00 0.00 0.00 2.24
533 559 5.316987 ACAAAAGTGTCCCTAAGATGGAAG 58.683 41.667 0.00 0.00 29.49 3.46
548 574 1.704628 TGGAAGCTCCCAAACTGATCA 59.295 47.619 0.00 0.00 35.03 2.92
549 575 2.290514 TGGAAGCTCCCAAACTGATCAG 60.291 50.000 21.37 21.37 35.03 2.90
609 637 3.190118 ACCGTGGAGAAACTAAGTACTCG 59.810 47.826 0.00 0.00 0.00 4.18
683 711 2.036992 CCTTCTTCCCTCGATGGATGAG 59.963 54.545 19.72 12.04 39.10 2.90
704 732 2.556806 GCAGTTACGTTACGTTTGCAG 58.443 47.619 25.05 12.53 41.54 4.41
761 789 1.153127 ACGCCTTCCACAAACCGAA 60.153 52.632 0.00 0.00 0.00 4.30
831 859 2.409870 CGCAAGAACCAGCCATCCC 61.410 63.158 0.00 0.00 43.02 3.85
832 860 1.304381 GCAAGAACCAGCCATCCCA 60.304 57.895 0.00 0.00 0.00 4.37
875 906 1.724581 GCACGCACAAAACGCCTAC 60.725 57.895 0.00 0.00 0.00 3.18
933 968 1.956477 TCGCACATGCATCTCTAGCTA 59.044 47.619 0.00 0.00 42.21 3.32
976 1011 8.874744 ATTACAAATATCCATCCAGATCCAAG 57.125 34.615 0.00 0.00 0.00 3.61
980 1015 0.841961 TCCATCCAGATCCAAGCCAG 59.158 55.000 0.00 0.00 0.00 4.85
985 1020 0.617413 CCAGATCCAAGCCAGTCACT 59.383 55.000 0.00 0.00 0.00 3.41
991 1026 1.421268 TCCAAGCCAGTCACTCACAAT 59.579 47.619 0.00 0.00 0.00 2.71
1046 1081 0.034896 GTTTCCGTCAGGCAGAGGAA 59.965 55.000 0.82 4.31 40.60 3.36
1449 1484 3.390521 TCCAGGTACAGGCTGGCG 61.391 66.667 20.34 1.78 38.10 5.69
1753 1788 5.254901 ACTCTGGTTACAGTAGTACTCCTG 58.745 45.833 13.49 13.49 45.14 3.86
1865 1948 7.596248 ACACACAAAAGATGAGTAAAATGCATC 59.404 33.333 0.00 0.00 38.89 3.91
1872 1955 6.058183 AGATGAGTAAAATGCATCTGGGTAC 58.942 40.000 0.00 0.00 45.02 3.34
1875 1958 7.136822 TGAGTAAAATGCATCTGGGTACTAT 57.863 36.000 0.00 0.00 0.00 2.12
1890 1980 2.135664 ACTATTAGTGTCGATGCGGC 57.864 50.000 0.00 0.00 0.00 6.53
1899 1989 1.021968 GTCGATGCGGCCCTAATTTT 58.978 50.000 0.00 0.00 0.00 1.82
2368 2515 3.198853 GGACTACAAGAGGAGCTTTCCAT 59.801 47.826 0.00 0.00 33.60 3.41
2471 2624 8.730680 GTTTGATGGTTGTGAAGTAGATACATT 58.269 33.333 0.00 0.00 0.00 2.71
2499 2653 4.437239 CTCTCTCGCCACTGATTTTATGT 58.563 43.478 0.00 0.00 0.00 2.29
2578 2734 6.843333 AGAAAGATTCTAGATGATGGACTCCA 59.157 38.462 0.00 0.00 38.49 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.042638 TCACAACAACCATCAAAGGAAAAA 57.957 33.333 0.00 0.00 0.00 1.94
14 15 5.667539 TCACAACAACCATCAAAGGAAAA 57.332 34.783 0.00 0.00 0.00 2.29
15 16 5.453057 CCATCACAACAACCATCAAAGGAAA 60.453 40.000 0.00 0.00 0.00 3.13
16 17 4.039004 CCATCACAACAACCATCAAAGGAA 59.961 41.667 0.00 0.00 0.00 3.36
17 18 3.573538 CCATCACAACAACCATCAAAGGA 59.426 43.478 0.00 0.00 0.00 3.36
18 19 3.321682 ACCATCACAACAACCATCAAAGG 59.678 43.478 0.00 0.00 0.00 3.11
19 20 4.300803 CACCATCACAACAACCATCAAAG 58.699 43.478 0.00 0.00 0.00 2.77
20 21 3.492309 GCACCATCACAACAACCATCAAA 60.492 43.478 0.00 0.00 0.00 2.69
21 22 2.035704 GCACCATCACAACAACCATCAA 59.964 45.455 0.00 0.00 0.00 2.57
22 23 1.612950 GCACCATCACAACAACCATCA 59.387 47.619 0.00 0.00 0.00 3.07
23 24 1.401409 CGCACCATCACAACAACCATC 60.401 52.381 0.00 0.00 0.00 3.51
24 25 0.597568 CGCACCATCACAACAACCAT 59.402 50.000 0.00 0.00 0.00 3.55
25 26 0.464554 TCGCACCATCACAACAACCA 60.465 50.000 0.00 0.00 0.00 3.67
26 27 0.238289 CTCGCACCATCACAACAACC 59.762 55.000 0.00 0.00 0.00 3.77
27 28 1.195448 CTCTCGCACCATCACAACAAC 59.805 52.381 0.00 0.00 0.00 3.32
28 29 1.511850 CTCTCGCACCATCACAACAA 58.488 50.000 0.00 0.00 0.00 2.83
29 30 0.320683 CCTCTCGCACCATCACAACA 60.321 55.000 0.00 0.00 0.00 3.33
30 31 1.639298 GCCTCTCGCACCATCACAAC 61.639 60.000 0.00 0.00 37.47 3.32
31 32 1.375908 GCCTCTCGCACCATCACAA 60.376 57.895 0.00 0.00 37.47 3.33
32 33 2.265739 GCCTCTCGCACCATCACA 59.734 61.111 0.00 0.00 37.47 3.58
33 34 1.812922 CTGCCTCTCGCACCATCAC 60.813 63.158 0.00 0.00 44.64 3.06
34 35 2.580815 CTGCCTCTCGCACCATCA 59.419 61.111 0.00 0.00 44.64 3.07
35 36 2.202987 CCTGCCTCTCGCACCATC 60.203 66.667 0.00 0.00 44.64 3.51
36 37 3.005539 ACCTGCCTCTCGCACCAT 61.006 61.111 0.00 0.00 44.64 3.55
37 38 4.007644 CACCTGCCTCTCGCACCA 62.008 66.667 0.00 0.00 44.64 4.17
38 39 3.695606 TCACCTGCCTCTCGCACC 61.696 66.667 0.00 0.00 44.64 5.01
39 40 2.433318 GTCACCTGCCTCTCGCAC 60.433 66.667 0.00 0.00 44.64 5.34
41 42 4.057428 ACGTCACCTGCCTCTCGC 62.057 66.667 0.00 0.00 38.31 5.03
42 43 2.126307 CACGTCACCTGCCTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
43 44 2.433318 GCACGTCACCTGCCTCTC 60.433 66.667 0.00 0.00 0.00 3.20
44 45 2.116983 AATGCACGTCACCTGCCTCT 62.117 55.000 0.00 0.00 33.36 3.69
45 46 1.672356 AATGCACGTCACCTGCCTC 60.672 57.895 0.00 0.00 33.36 4.70
46 47 1.968017 CAATGCACGTCACCTGCCT 60.968 57.895 0.00 0.00 33.36 4.75
47 48 2.562912 CAATGCACGTCACCTGCC 59.437 61.111 0.00 0.00 33.36 4.85
48 49 2.260869 ACCAATGCACGTCACCTGC 61.261 57.895 0.00 0.00 35.03 4.85
49 50 1.165907 ACACCAATGCACGTCACCTG 61.166 55.000 0.00 0.00 0.00 4.00
50 51 0.884704 GACACCAATGCACGTCACCT 60.885 55.000 0.00 0.00 0.00 4.00
51 52 1.163420 TGACACCAATGCACGTCACC 61.163 55.000 0.00 0.00 33.61 4.02
52 53 0.660488 TTGACACCAATGCACGTCAC 59.340 50.000 0.00 0.00 38.07 3.67
53 54 0.943673 CTTGACACCAATGCACGTCA 59.056 50.000 0.00 0.00 36.63 4.35
54 55 0.385974 GCTTGACACCAATGCACGTC 60.386 55.000 0.00 0.00 0.00 4.34
55 56 0.819259 AGCTTGACACCAATGCACGT 60.819 50.000 0.00 0.00 32.57 4.49
56 57 0.110056 GAGCTTGACACCAATGCACG 60.110 55.000 0.00 0.00 32.57 5.34
57 58 0.953727 TGAGCTTGACACCAATGCAC 59.046 50.000 0.00 0.00 32.57 4.57
58 59 1.202794 TCTGAGCTTGACACCAATGCA 60.203 47.619 0.00 0.00 32.57 3.96
59 60 1.527034 TCTGAGCTTGACACCAATGC 58.473 50.000 0.00 0.00 0.00 3.56
60 61 3.340928 TCATCTGAGCTTGACACCAATG 58.659 45.455 0.00 0.00 0.00 2.82
61 62 3.708403 TCATCTGAGCTTGACACCAAT 57.292 42.857 0.00 0.00 0.00 3.16
62 63 3.708403 ATCATCTGAGCTTGACACCAA 57.292 42.857 0.00 0.00 0.00 3.67
63 64 3.262660 AGAATCATCTGAGCTTGACACCA 59.737 43.478 0.00 0.00 33.59 4.17
64 65 3.871485 AGAATCATCTGAGCTTGACACC 58.129 45.455 0.00 0.00 33.59 4.16
65 66 4.032672 CGAAGAATCATCTGAGCTTGACAC 59.967 45.833 0.00 0.00 35.59 3.67
66 67 4.179298 CGAAGAATCATCTGAGCTTGACA 58.821 43.478 0.00 0.00 35.59 3.58
67 68 3.555139 CCGAAGAATCATCTGAGCTTGAC 59.445 47.826 0.00 0.00 35.59 3.18
68 69 3.196469 ACCGAAGAATCATCTGAGCTTGA 59.804 43.478 0.00 0.00 35.59 3.02
69 70 3.529533 ACCGAAGAATCATCTGAGCTTG 58.470 45.455 0.00 0.00 35.59 4.01
70 71 3.450457 AGACCGAAGAATCATCTGAGCTT 59.550 43.478 0.00 0.00 35.59 3.74
71 72 3.030291 AGACCGAAGAATCATCTGAGCT 58.970 45.455 0.00 0.00 35.59 4.09
72 73 3.451141 AGACCGAAGAATCATCTGAGC 57.549 47.619 0.00 0.00 35.59 4.26
73 74 4.753233 ACAAGACCGAAGAATCATCTGAG 58.247 43.478 0.00 0.00 35.59 3.35
74 75 4.808414 ACAAGACCGAAGAATCATCTGA 57.192 40.909 0.00 0.00 35.59 3.27
75 76 5.180117 ACAAACAAGACCGAAGAATCATCTG 59.820 40.000 0.00 0.00 35.59 2.90
76 77 5.308825 ACAAACAAGACCGAAGAATCATCT 58.691 37.500 0.00 0.00 37.57 2.90
77 78 5.613358 ACAAACAAGACCGAAGAATCATC 57.387 39.130 0.00 0.00 0.00 2.92
78 79 7.687941 ATTACAAACAAGACCGAAGAATCAT 57.312 32.000 0.00 0.00 0.00 2.45
79 80 7.504924 AATTACAAACAAGACCGAAGAATCA 57.495 32.000 0.00 0.00 0.00 2.57
80 81 8.797266 AAAATTACAAACAAGACCGAAGAATC 57.203 30.769 0.00 0.00 0.00 2.52
81 82 9.673454 GTAAAATTACAAACAAGACCGAAGAAT 57.327 29.630 0.00 0.00 33.88 2.40
82 83 8.895737 AGTAAAATTACAAACAAGACCGAAGAA 58.104 29.630 6.13 0.00 36.12 2.52
83 84 8.441312 AGTAAAATTACAAACAAGACCGAAGA 57.559 30.769 6.13 0.00 36.12 2.87
84 85 9.166126 GAAGTAAAATTACAAACAAGACCGAAG 57.834 33.333 6.13 0.00 36.12 3.79
85 86 8.895737 AGAAGTAAAATTACAAACAAGACCGAA 58.104 29.630 6.13 0.00 36.12 4.30
86 87 8.441312 AGAAGTAAAATTACAAACAAGACCGA 57.559 30.769 6.13 0.00 36.12 4.69
87 88 8.339714 TGAGAAGTAAAATTACAAACAAGACCG 58.660 33.333 6.13 0.00 36.12 4.79
91 92 9.329913 CCGATGAGAAGTAAAATTACAAACAAG 57.670 33.333 6.13 1.44 36.12 3.16
92 93 7.806014 GCCGATGAGAAGTAAAATTACAAACAA 59.194 33.333 6.13 0.00 36.12 2.83
93 94 7.302524 GCCGATGAGAAGTAAAATTACAAACA 58.697 34.615 6.13 1.91 36.12 2.83
94 95 6.464834 CGCCGATGAGAAGTAAAATTACAAAC 59.535 38.462 6.13 0.00 36.12 2.93
95 96 6.148150 ACGCCGATGAGAAGTAAAATTACAAA 59.852 34.615 6.13 0.00 36.12 2.83
96 97 5.640357 ACGCCGATGAGAAGTAAAATTACAA 59.360 36.000 6.13 0.00 36.12 2.41
97 98 5.172934 ACGCCGATGAGAAGTAAAATTACA 58.827 37.500 6.13 0.00 36.12 2.41
98 99 5.713822 ACGCCGATGAGAAGTAAAATTAC 57.286 39.130 0.00 0.00 0.00 1.89
99 100 5.292589 GGAACGCCGATGAGAAGTAAAATTA 59.707 40.000 0.00 0.00 0.00 1.40
100 101 4.094442 GGAACGCCGATGAGAAGTAAAATT 59.906 41.667 0.00 0.00 0.00 1.82
101 102 3.621715 GGAACGCCGATGAGAAGTAAAAT 59.378 43.478 0.00 0.00 0.00 1.82
102 103 2.997986 GGAACGCCGATGAGAAGTAAAA 59.002 45.455 0.00 0.00 0.00 1.52
103 104 2.232941 AGGAACGCCGATGAGAAGTAAA 59.767 45.455 0.00 0.00 39.96 2.01
104 105 1.822990 AGGAACGCCGATGAGAAGTAA 59.177 47.619 0.00 0.00 39.96 2.24
105 106 1.471119 AGGAACGCCGATGAGAAGTA 58.529 50.000 0.00 0.00 39.96 2.24
106 107 0.608640 AAGGAACGCCGATGAGAAGT 59.391 50.000 0.00 0.00 39.96 3.01
107 108 1.394917 CAAAGGAACGCCGATGAGAAG 59.605 52.381 0.00 0.00 39.96 2.85
108 109 1.270625 ACAAAGGAACGCCGATGAGAA 60.271 47.619 0.00 0.00 39.96 2.87
109 110 0.320374 ACAAAGGAACGCCGATGAGA 59.680 50.000 0.00 0.00 39.96 3.27
110 111 0.443869 CACAAAGGAACGCCGATGAG 59.556 55.000 0.00 0.00 39.96 2.90
111 112 1.573829 GCACAAAGGAACGCCGATGA 61.574 55.000 0.00 0.00 39.96 2.92
112 113 1.154225 GCACAAAGGAACGCCGATG 60.154 57.895 0.00 0.00 39.96 3.84
113 114 0.960364 ATGCACAAAGGAACGCCGAT 60.960 50.000 0.00 0.00 39.96 4.18
114 115 0.320858 TATGCACAAAGGAACGCCGA 60.321 50.000 0.00 0.00 39.96 5.54
115 116 0.096976 CTATGCACAAAGGAACGCCG 59.903 55.000 0.00 0.00 39.96 6.46
116 117 0.451783 CCTATGCACAAAGGAACGCC 59.548 55.000 5.80 0.00 34.58 5.68
117 118 0.179163 GCCTATGCACAAAGGAACGC 60.179 55.000 14.26 0.00 37.47 4.84
118 119 1.453155 AGCCTATGCACAAAGGAACG 58.547 50.000 14.26 0.00 41.13 3.95
119 120 3.375299 CACTAGCCTATGCACAAAGGAAC 59.625 47.826 14.26 0.00 41.13 3.62
120 121 3.009033 ACACTAGCCTATGCACAAAGGAA 59.991 43.478 14.26 2.46 41.13 3.36
121 122 2.571653 ACACTAGCCTATGCACAAAGGA 59.428 45.455 14.26 0.00 41.13 3.36
122 123 2.991250 ACACTAGCCTATGCACAAAGG 58.009 47.619 7.13 7.13 41.13 3.11
123 124 4.256920 AGAACACTAGCCTATGCACAAAG 58.743 43.478 0.00 0.00 41.13 2.77
124 125 4.286297 AGAACACTAGCCTATGCACAAA 57.714 40.909 0.00 0.00 41.13 2.83
125 126 3.981071 AGAACACTAGCCTATGCACAA 57.019 42.857 0.00 0.00 41.13 3.33
126 127 4.023980 AGTAGAACACTAGCCTATGCACA 58.976 43.478 0.00 0.00 41.13 4.57
127 128 4.142138 ACAGTAGAACACTAGCCTATGCAC 60.142 45.833 0.00 0.00 35.89 4.57
128 129 4.023980 ACAGTAGAACACTAGCCTATGCA 58.976 43.478 0.00 0.00 35.89 3.96
129 130 4.339814 AGACAGTAGAACACTAGCCTATGC 59.660 45.833 0.00 0.00 34.98 3.14
130 131 6.458232 AAGACAGTAGAACACTAGCCTATG 57.542 41.667 0.00 0.00 34.98 2.23
131 132 7.483580 AAAAGACAGTAGAACACTAGCCTAT 57.516 36.000 0.00 0.00 34.98 2.57
132 133 6.912951 AAAAGACAGTAGAACACTAGCCTA 57.087 37.500 0.00 0.00 34.98 3.93
133 134 5.810080 AAAAGACAGTAGAACACTAGCCT 57.190 39.130 0.00 0.00 34.98 4.58
134 135 7.153315 ACTAAAAAGACAGTAGAACACTAGCC 58.847 38.462 0.00 0.00 34.98 3.93
135 136 8.590719 AACTAAAAAGACAGTAGAACACTAGC 57.409 34.615 0.00 0.00 34.98 3.42
138 139 8.182227 GCAAAACTAAAAAGACAGTAGAACACT 58.818 33.333 0.00 0.00 38.32 3.55
139 140 7.431376 GGCAAAACTAAAAAGACAGTAGAACAC 59.569 37.037 0.00 0.00 0.00 3.32
140 141 7.121463 TGGCAAAACTAAAAAGACAGTAGAACA 59.879 33.333 0.00 0.00 0.00 3.18
141 142 7.477494 TGGCAAAACTAAAAAGACAGTAGAAC 58.523 34.615 0.00 0.00 0.00 3.01
142 143 7.201785 CCTGGCAAAACTAAAAAGACAGTAGAA 60.202 37.037 0.00 0.00 0.00 2.10
143 144 6.262273 CCTGGCAAAACTAAAAAGACAGTAGA 59.738 38.462 0.00 0.00 0.00 2.59
144 145 6.039382 ACCTGGCAAAACTAAAAAGACAGTAG 59.961 38.462 0.00 0.00 0.00 2.57
145 146 5.889289 ACCTGGCAAAACTAAAAAGACAGTA 59.111 36.000 0.00 0.00 0.00 2.74
146 147 4.709886 ACCTGGCAAAACTAAAAAGACAGT 59.290 37.500 0.00 0.00 0.00 3.55
147 148 5.262588 ACCTGGCAAAACTAAAAAGACAG 57.737 39.130 0.00 0.00 0.00 3.51
148 149 4.201970 CGACCTGGCAAAACTAAAAAGACA 60.202 41.667 0.00 0.00 0.00 3.41
149 150 4.035909 TCGACCTGGCAAAACTAAAAAGAC 59.964 41.667 0.00 0.00 0.00 3.01
150 151 4.200874 TCGACCTGGCAAAACTAAAAAGA 58.799 39.130 0.00 0.00 0.00 2.52
151 152 4.561735 TCGACCTGGCAAAACTAAAAAG 57.438 40.909 0.00 0.00 0.00 2.27
152 153 6.207810 ACATATCGACCTGGCAAAACTAAAAA 59.792 34.615 0.00 0.00 0.00 1.94
153 154 5.708230 ACATATCGACCTGGCAAAACTAAAA 59.292 36.000 0.00 0.00 0.00 1.52
154 155 5.250200 ACATATCGACCTGGCAAAACTAAA 58.750 37.500 0.00 0.00 0.00 1.85
155 156 4.839121 ACATATCGACCTGGCAAAACTAA 58.161 39.130 0.00 0.00 0.00 2.24
156 157 4.481368 ACATATCGACCTGGCAAAACTA 57.519 40.909 0.00 0.00 0.00 2.24
157 158 3.350219 ACATATCGACCTGGCAAAACT 57.650 42.857 0.00 0.00 0.00 2.66
158 159 3.000925 CGTACATATCGACCTGGCAAAAC 59.999 47.826 0.00 0.00 0.00 2.43
159 160 3.191669 CGTACATATCGACCTGGCAAAA 58.808 45.455 0.00 0.00 0.00 2.44
160 161 2.166870 ACGTACATATCGACCTGGCAAA 59.833 45.455 0.00 0.00 0.00 3.68
161 162 1.752498 ACGTACATATCGACCTGGCAA 59.248 47.619 0.00 0.00 0.00 4.52
162 163 1.066454 CACGTACATATCGACCTGGCA 59.934 52.381 0.00 0.00 0.00 4.92
163 164 1.335810 TCACGTACATATCGACCTGGC 59.664 52.381 0.00 0.00 0.00 4.85
164 165 2.617308 AGTCACGTACATATCGACCTGG 59.383 50.000 0.00 0.00 0.00 4.45
165 166 3.965292 AGTCACGTACATATCGACCTG 57.035 47.619 0.00 0.00 0.00 4.00
166 167 3.693085 ACAAGTCACGTACATATCGACCT 59.307 43.478 0.00 0.00 0.00 3.85
167 168 4.025015 ACAAGTCACGTACATATCGACC 57.975 45.455 0.00 0.00 0.00 4.79
168 169 8.838009 CATAATACAAGTCACGTACATATCGAC 58.162 37.037 0.00 0.00 0.00 4.20
169 170 8.776470 TCATAATACAAGTCACGTACATATCGA 58.224 33.333 0.00 0.00 0.00 3.59
170 171 8.944212 TCATAATACAAGTCACGTACATATCG 57.056 34.615 0.00 0.00 0.00 2.92
172 173 9.856488 GGATCATAATACAAGTCACGTACATAT 57.144 33.333 0.00 0.00 0.00 1.78
173 174 9.074576 AGGATCATAATACAAGTCACGTACATA 57.925 33.333 0.00 0.00 0.00 2.29
174 175 7.952671 AGGATCATAATACAAGTCACGTACAT 58.047 34.615 0.00 0.00 0.00 2.29
175 176 7.342769 AGGATCATAATACAAGTCACGTACA 57.657 36.000 0.00 0.00 0.00 2.90
176 177 9.909644 ATAAGGATCATAATACAAGTCACGTAC 57.090 33.333 0.00 0.00 0.00 3.67
177 178 9.908152 CATAAGGATCATAATACAAGTCACGTA 57.092 33.333 0.00 0.00 0.00 3.57
178 179 8.638873 TCATAAGGATCATAATACAAGTCACGT 58.361 33.333 0.00 0.00 0.00 4.49
179 180 9.645059 ATCATAAGGATCATAATACAAGTCACG 57.355 33.333 0.00 0.00 0.00 4.35
230 231 5.245075 TCCCTAACGCCAATCAATTCTTTTT 59.755 36.000 0.00 0.00 0.00 1.94
231 232 4.770010 TCCCTAACGCCAATCAATTCTTTT 59.230 37.500 0.00 0.00 0.00 2.27
232 233 4.340617 TCCCTAACGCCAATCAATTCTTT 58.659 39.130 0.00 0.00 0.00 2.52
233 234 3.947834 CTCCCTAACGCCAATCAATTCTT 59.052 43.478 0.00 0.00 0.00 2.52
234 235 3.199946 TCTCCCTAACGCCAATCAATTCT 59.800 43.478 0.00 0.00 0.00 2.40
235 236 3.541632 TCTCCCTAACGCCAATCAATTC 58.458 45.455 0.00 0.00 0.00 2.17
236 237 3.545703 CTCTCCCTAACGCCAATCAATT 58.454 45.455 0.00 0.00 0.00 2.32
237 238 2.158755 CCTCTCCCTAACGCCAATCAAT 60.159 50.000 0.00 0.00 0.00 2.57
238 239 1.209504 CCTCTCCCTAACGCCAATCAA 59.790 52.381 0.00 0.00 0.00 2.57
239 240 0.830648 CCTCTCCCTAACGCCAATCA 59.169 55.000 0.00 0.00 0.00 2.57
240 241 1.120530 TCCTCTCCCTAACGCCAATC 58.879 55.000 0.00 0.00 0.00 2.67
241 242 0.831307 GTCCTCTCCCTAACGCCAAT 59.169 55.000 0.00 0.00 0.00 3.16
242 243 1.262640 GGTCCTCTCCCTAACGCCAA 61.263 60.000 0.00 0.00 0.00 4.52
243 244 1.684734 GGTCCTCTCCCTAACGCCA 60.685 63.158 0.00 0.00 0.00 5.69
244 245 2.783288 CGGTCCTCTCCCTAACGCC 61.783 68.421 0.00 0.00 0.00 5.68
245 246 2.783288 CCGGTCCTCTCCCTAACGC 61.783 68.421 0.00 0.00 0.00 4.84
246 247 1.077212 TCCGGTCCTCTCCCTAACG 60.077 63.158 0.00 0.00 0.00 3.18
247 248 1.042003 GGTCCGGTCCTCTCCCTAAC 61.042 65.000 10.82 0.00 0.00 2.34
248 249 1.309006 GGTCCGGTCCTCTCCCTAA 59.691 63.158 10.82 0.00 0.00 2.69
249 250 2.698075 GGGTCCGGTCCTCTCCCTA 61.698 68.421 17.57 0.00 35.63 3.53
250 251 4.077180 GGGTCCGGTCCTCTCCCT 62.077 72.222 17.57 0.00 35.63 4.20
251 252 4.393778 TGGGTCCGGTCCTCTCCC 62.394 72.222 17.57 12.71 38.68 4.30
252 253 3.075641 GTGGGTCCGGTCCTCTCC 61.076 72.222 17.57 1.26 0.00 3.71
253 254 3.075641 GGTGGGTCCGGTCCTCTC 61.076 72.222 17.57 8.37 0.00 3.20
254 255 4.716977 GGGTGGGTCCGGTCCTCT 62.717 72.222 17.57 0.00 37.00 3.69
261 262 2.137177 ATTTCAGGTGGGTGGGTCCG 62.137 60.000 0.00 0.00 37.00 4.79
262 263 0.114364 AATTTCAGGTGGGTGGGTCC 59.886 55.000 0.00 0.00 0.00 4.46
263 264 1.545841 GAATTTCAGGTGGGTGGGTC 58.454 55.000 0.00 0.00 0.00 4.46
264 265 0.251165 CGAATTTCAGGTGGGTGGGT 60.251 55.000 0.00 0.00 0.00 4.51
265 266 0.965363 CCGAATTTCAGGTGGGTGGG 60.965 60.000 0.00 0.00 0.00 4.61
266 267 0.965363 CCCGAATTTCAGGTGGGTGG 60.965 60.000 0.00 0.00 35.05 4.61
267 268 0.037590 TCCCGAATTTCAGGTGGGTG 59.962 55.000 6.90 0.00 40.86 4.61
268 269 0.328258 CTCCCGAATTTCAGGTGGGT 59.672 55.000 6.90 0.00 40.86 4.51
269 270 0.394352 CCTCCCGAATTTCAGGTGGG 60.394 60.000 10.68 6.37 41.43 4.61
270 271 0.394352 CCCTCCCGAATTTCAGGTGG 60.394 60.000 11.34 11.34 34.68 4.61
271 272 0.394352 CCCCTCCCGAATTTCAGGTG 60.394 60.000 0.00 0.00 0.00 4.00
272 273 1.571773 CCCCCTCCCGAATTTCAGGT 61.572 60.000 0.00 0.00 0.00 4.00
273 274 1.227383 CCCCCTCCCGAATTTCAGG 59.773 63.158 0.00 0.00 0.00 3.86
274 275 4.986467 CCCCCTCCCGAATTTCAG 57.014 61.111 0.00 0.00 0.00 3.02
288 289 2.158608 CCAACTAATCCACTCATCCCCC 60.159 54.545 0.00 0.00 0.00 5.40
289 290 2.777692 TCCAACTAATCCACTCATCCCC 59.222 50.000 0.00 0.00 0.00 4.81
290 291 4.455606 CTTCCAACTAATCCACTCATCCC 58.544 47.826 0.00 0.00 0.00 3.85
291 292 4.080299 ACCTTCCAACTAATCCACTCATCC 60.080 45.833 0.00 0.00 0.00 3.51
292 293 5.104259 ACCTTCCAACTAATCCACTCATC 57.896 43.478 0.00 0.00 0.00 2.92
293 294 5.520748 AACCTTCCAACTAATCCACTCAT 57.479 39.130 0.00 0.00 0.00 2.90
294 295 4.993705 AACCTTCCAACTAATCCACTCA 57.006 40.909 0.00 0.00 0.00 3.41
295 296 4.868734 CGTAACCTTCCAACTAATCCACTC 59.131 45.833 0.00 0.00 0.00 3.51
296 297 4.285260 ACGTAACCTTCCAACTAATCCACT 59.715 41.667 0.00 0.00 0.00 4.00
297 298 4.572909 ACGTAACCTTCCAACTAATCCAC 58.427 43.478 0.00 0.00 0.00 4.02
298 299 4.895668 ACGTAACCTTCCAACTAATCCA 57.104 40.909 0.00 0.00 0.00 3.41
299 300 6.875726 AGTTAACGTAACCTTCCAACTAATCC 59.124 38.462 0.00 0.00 39.47 3.01
300 301 7.895975 AGTTAACGTAACCTTCCAACTAATC 57.104 36.000 0.00 0.00 39.47 1.75
301 302 9.208022 GTAAGTTAACGTAACCTTCCAACTAAT 57.792 33.333 2.68 0.00 39.47 1.73
302 303 7.381139 CGTAAGTTAACGTAACCTTCCAACTAA 59.619 37.037 2.68 0.00 39.47 2.24
303 304 6.861055 CGTAAGTTAACGTAACCTTCCAACTA 59.139 38.462 2.68 0.00 39.47 2.24
304 305 5.691754 CGTAAGTTAACGTAACCTTCCAACT 59.308 40.000 2.68 0.00 39.47 3.16
305 306 5.904802 CGTAAGTTAACGTAACCTTCCAAC 58.095 41.667 2.68 0.00 39.47 3.77
324 325 7.613585 TCTTCCAAAATCATACACCTACGTAA 58.386 34.615 0.00 0.00 0.00 3.18
325 326 7.172868 TCTTCCAAAATCATACACCTACGTA 57.827 36.000 0.00 0.00 0.00 3.57
326 327 6.045072 TCTTCCAAAATCATACACCTACGT 57.955 37.500 0.00 0.00 0.00 3.57
327 328 6.978343 TTCTTCCAAAATCATACACCTACG 57.022 37.500 0.00 0.00 0.00 3.51
330 331 9.927081 ATCTAATTCTTCCAAAATCATACACCT 57.073 29.630 0.00 0.00 0.00 4.00
385 386 6.073440 GCACTTTCACCTGAGTTTTATCGTAA 60.073 38.462 0.00 0.00 0.00 3.18
386 387 5.407387 GCACTTTCACCTGAGTTTTATCGTA 59.593 40.000 0.00 0.00 0.00 3.43
391 407 3.799366 TCGCACTTTCACCTGAGTTTTA 58.201 40.909 0.00 0.00 0.00 1.52
418 434 2.685897 GCCCGGTTGATAATAAAGCACA 59.314 45.455 0.00 0.00 0.00 4.57
426 442 3.507162 TCATCATGCCCGGTTGATAAT 57.493 42.857 0.00 0.00 31.50 1.28
427 443 3.181446 TGATCATCATGCCCGGTTGATAA 60.181 43.478 0.00 0.00 31.50 1.75
428 444 2.371510 TGATCATCATGCCCGGTTGATA 59.628 45.455 0.00 0.00 31.50 2.15
429 445 1.143481 TGATCATCATGCCCGGTTGAT 59.857 47.619 0.00 3.18 32.87 2.57
430 446 0.545646 TGATCATCATGCCCGGTTGA 59.454 50.000 0.00 0.45 0.00 3.18
431 447 1.612676 ATGATCATCATGCCCGGTTG 58.387 50.000 1.18 0.00 35.43 3.77
432 448 2.233271 GAATGATCATCATGCCCGGTT 58.767 47.619 9.06 0.00 37.15 4.44
433 449 1.879372 CGAATGATCATCATGCCCGGT 60.879 52.381 9.06 0.00 37.15 5.28
434 450 0.800631 CGAATGATCATCATGCCCGG 59.199 55.000 9.06 0.00 37.15 5.73
435 451 1.462283 GACGAATGATCATCATGCCCG 59.538 52.381 9.06 8.16 37.15 6.13
436 452 2.483106 CTGACGAATGATCATCATGCCC 59.517 50.000 9.06 0.00 37.15 5.36
454 480 0.981183 AGATAAACCCCACACGCTGA 59.019 50.000 0.00 0.00 0.00 4.26
466 492 3.128589 TCGCCATTGGAGCAAAGATAAAC 59.871 43.478 6.95 0.00 0.00 2.01
479 505 0.672401 ACGTGGTAAGTCGCCATTGG 60.672 55.000 0.00 0.00 38.40 3.16
480 506 0.719465 GACGTGGTAAGTCGCCATTG 59.281 55.000 0.00 0.00 38.40 2.82
481 507 3.132863 GACGTGGTAAGTCGCCATT 57.867 52.632 0.00 0.00 38.40 3.16
482 508 4.904466 GACGTGGTAAGTCGCCAT 57.096 55.556 0.00 0.00 38.40 4.40
487 513 0.514691 ACGACTCGACGTGGTAAGTC 59.485 55.000 5.20 8.72 44.84 3.01
488 514 0.947244 AACGACTCGACGTGGTAAGT 59.053 50.000 5.20 0.00 45.83 2.24
489 515 1.712350 CAAACGACTCGACGTGGTAAG 59.288 52.381 5.20 0.00 45.83 2.34
490 516 1.333308 TCAAACGACTCGACGTGGTAA 59.667 47.619 5.20 0.00 45.83 2.85
491 517 0.943673 TCAAACGACTCGACGTGGTA 59.056 50.000 5.20 0.00 45.83 3.25
492 518 0.593263 GTCAAACGACTCGACGTGGT 60.593 55.000 5.20 0.00 45.83 4.16
527 553 2.309755 TGATCAGTTTGGGAGCTTCCAT 59.690 45.455 16.58 0.00 38.64 3.41
533 559 0.620556 TCCCTGATCAGTTTGGGAGC 59.379 55.000 21.11 0.00 43.20 4.70
548 574 3.117888 ACCACGCTAAATGATCAATCCCT 60.118 43.478 0.00 0.00 0.00 4.20
549 575 3.003689 CACCACGCTAAATGATCAATCCC 59.996 47.826 0.00 0.00 0.00 3.85
609 637 0.455410 TGCCGGAATTTGCATGCTAC 59.545 50.000 20.33 0.00 31.31 3.58
683 711 1.261089 TGCAAACGTAACGTAACTGCC 59.739 47.619 0.98 0.00 39.99 4.85
704 732 2.398554 AACATGGATGGCGTCGCAC 61.399 57.895 20.50 9.11 0.00 5.34
761 789 1.008084 GACTAGGGAGGGTTGGGTACT 59.992 57.143 0.00 0.00 0.00 2.73
831 859 2.560981 GGGGTGGTGGTTTTCTATTGTG 59.439 50.000 0.00 0.00 0.00 3.33
832 860 2.816337 CGGGGTGGTGGTTTTCTATTGT 60.816 50.000 0.00 0.00 0.00 2.71
875 906 5.527951 CGTAGAAGATTCTTGATGGAGGAG 58.472 45.833 3.03 0.00 38.70 3.69
933 968 5.674525 TGTAATCAAATGCACTAGCTAGCT 58.325 37.500 23.12 23.12 42.74 3.32
976 1011 3.521560 TCGATTATTGTGAGTGACTGGC 58.478 45.455 0.00 0.00 0.00 4.85
980 1015 5.333645 GCCATGATCGATTATTGTGAGTGAC 60.334 44.000 0.00 0.00 0.00 3.67
985 1020 3.499537 GCTGCCATGATCGATTATTGTGA 59.500 43.478 0.00 0.00 0.00 3.58
991 1026 1.071228 AGCAGCTGCCATGATCGATTA 59.929 47.619 34.39 0.00 43.38 1.75
1064 1099 3.305181 TGCTGATCCTGGAGCAGTA 57.695 52.632 34.66 30.41 46.27 2.74
1130 1165 3.728267 TACAGCGTCGATCGTGGCG 62.728 63.158 15.94 17.88 42.13 5.69
1131 1166 2.101575 TACAGCGTCGATCGTGGC 59.898 61.111 15.94 18.49 42.13 5.01
1132 1167 1.585521 GGTACAGCGTCGATCGTGG 60.586 63.158 15.94 9.30 42.13 4.94
1133 1168 1.135939 TGGTACAGCGTCGATCGTG 59.864 57.895 15.94 8.48 42.13 4.35
1134 1169 3.582148 TGGTACAGCGTCGATCGT 58.418 55.556 15.94 0.00 42.13 3.73
1753 1788 9.050601 AGAATGATACAATGCTCTTAAGTTAGC 57.949 33.333 8.81 8.81 39.25 3.09
1865 1948 4.547532 GCATCGACACTAATAGTACCCAG 58.452 47.826 0.00 0.00 0.00 4.45
1872 1955 1.419374 GGCCGCATCGACACTAATAG 58.581 55.000 0.00 0.00 0.00 1.73
1875 1958 1.038681 TAGGGCCGCATCGACACTAA 61.039 55.000 0.00 0.00 0.00 2.24
1899 1989 2.106166 ACCCAGGCATGCATTTTGAAAA 59.894 40.909 21.36 0.00 0.00 2.29
2398 2545 0.172352 TTCGATTTGCCAAATCCGCC 59.828 50.000 21.27 1.17 43.39 6.13
2471 2624 0.962855 CAGTGGCGAGAGAGGAGACA 60.963 60.000 0.00 0.00 0.00 3.41
2499 2653 6.719370 GGTTGGTCATTATATCCTAATTGCCA 59.281 38.462 0.00 0.00 0.00 4.92
2515 2670 7.233348 AGTGTAAAATGATCTTTGGTTGGTCAT 59.767 33.333 0.00 0.00 0.00 3.06
2578 2734 4.528206 TGTCAGTGTCACAGTCCATAATCT 59.472 41.667 5.62 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.