Multiple sequence alignment - TraesCS7D01G310700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G310700 chr7D 100.000 2423 0 0 1 2423 394111996 394114418 0.000000e+00 4475.0
1 TraesCS7D01G310700 chr7D 90.066 302 28 2 1491 1791 137612894 137612594 8.120000e-105 390.0
2 TraesCS7D01G310700 chr7D 95.745 235 8 2 171 403 411941391 411941625 6.320000e-101 377.0
3 TraesCS7D01G310700 chr7D 73.778 225 43 14 445 663 428043450 428043664 9.290000e-10 75.0
4 TraesCS7D01G310700 chr7A 92.157 918 67 3 403 1317 447748599 447749514 0.000000e+00 1291.0
5 TraesCS7D01G310700 chr7A 96.303 568 17 3 1858 2423 447750033 447750598 0.000000e+00 929.0
6 TraesCS7D01G310700 chr7A 91.387 476 37 4 1331 1804 447749565 447750038 0.000000e+00 649.0
7 TraesCS7D01G310700 chr7A 94.215 242 12 1 174 413 544899397 544899156 3.810000e-98 368.0
8 TraesCS7D01G310700 chr7B 94.050 521 20 5 1903 2423 393866391 393866900 0.000000e+00 780.0
9 TraesCS7D01G310700 chr7B 97.436 39 1 0 445 483 370196633 370196595 1.550000e-07 67.6
10 TraesCS7D01G310700 chr3D 91.118 304 26 1 1491 1793 206620788 206620485 6.230000e-111 411.0
11 TraesCS7D01G310700 chr3D 90.397 302 28 1 1491 1791 144330242 144329941 1.750000e-106 396.0
12 TraesCS7D01G310700 chr3D 96.507 229 8 0 174 402 188306014 188306242 1.760000e-101 379.0
13 TraesCS7D01G310700 chr3D 93.785 177 11 0 1 177 135297417 135297593 1.430000e-67 267.0
14 TraesCS7D01G310700 chr3D 93.820 178 9 2 1 177 419869260 419869436 1.430000e-67 267.0
15 TraesCS7D01G310700 chr3D 82.439 205 35 1 403 606 484593751 484593955 6.880000e-41 178.0
16 TraesCS7D01G310700 chr3D 81.068 206 37 2 402 606 114320936 114321140 1.930000e-36 163.0
17 TraesCS7D01G310700 chr2D 90.850 306 23 3 1491 1794 586280214 586280516 2.900000e-109 405.0
18 TraesCS7D01G310700 chr2D 90.604 298 26 2 1495 1790 649822240 649821943 6.280000e-106 394.0
19 TraesCS7D01G310700 chr2D 96.087 230 9 0 174 403 443462771 443463000 2.270000e-100 375.0
20 TraesCS7D01G310700 chrUn 90.066 302 28 2 1491 1791 91679089 91678789 8.120000e-105 390.0
21 TraesCS7D01G310700 chr2A 89.836 305 27 4 1491 1793 185990402 185990100 2.920000e-104 388.0
22 TraesCS7D01G310700 chr5D 97.357 227 6 0 174 400 320645577 320645803 1.050000e-103 387.0
23 TraesCS7D01G310700 chr5D 96.087 230 9 0 174 403 104268409 104268638 2.270000e-100 375.0
24 TraesCS7D01G310700 chr5D 95.294 170 8 0 1 170 108502866 108502697 1.100000e-68 270.0
25 TraesCS7D01G310700 chr3A 89.735 302 30 1 1491 1791 491458129 491458430 3.780000e-103 385.0
26 TraesCS7D01G310700 chr6D 96.087 230 9 0 174 403 38621359 38621588 2.270000e-100 375.0
27 TraesCS7D01G310700 chr6D 94.767 172 9 0 1 172 348047353 348047524 3.970000e-68 268.0
28 TraesCS7D01G310700 chr4D 96.087 230 7 1 174 403 293824855 293824628 8.180000e-100 374.0
29 TraesCS7D01G310700 chr4D 95.319 235 11 0 174 408 473125597 473125363 8.180000e-100 374.0
30 TraesCS7D01G310700 chr4D 94.350 177 10 0 1 177 134483299 134483475 3.070000e-69 272.0
31 TraesCS7D01G310700 chr4D 75.661 189 38 8 424 610 173089356 173089538 1.190000e-13 87.9
32 TraesCS7D01G310700 chr5A 73.704 791 173 28 410 1188 258677287 258676520 2.370000e-70 276.0
33 TraesCS7D01G310700 chr1D 94.767 172 9 0 1 172 195250102 195250273 3.970000e-68 268.0
34 TraesCS7D01G310700 chr1D 94.767 172 9 0 1 172 355065823 355065652 3.970000e-68 268.0
35 TraesCS7D01G310700 chr1D 93.785 177 11 0 1 177 41714338 41714162 1.430000e-67 267.0
36 TraesCS7D01G310700 chr1A 94.798 173 8 1 1 172 343305082 343305254 3.970000e-68 268.0
37 TraesCS7D01G310700 chr3B 80.193 207 37 4 402 606 166518296 166518092 4.170000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G310700 chr7D 394111996 394114418 2422 False 4475.000000 4475 100.000000 1 2423 1 chr7D.!!$F1 2422
1 TraesCS7D01G310700 chr7A 447748599 447750598 1999 False 956.333333 1291 93.282333 403 2423 3 chr7A.!!$F1 2020
2 TraesCS7D01G310700 chr7B 393866391 393866900 509 False 780.000000 780 94.050000 1903 2423 1 chr7B.!!$F1 520
3 TraesCS7D01G310700 chr5A 258676520 258677287 767 True 276.000000 276 73.704000 410 1188 1 chr5A.!!$R1 778

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.028902 GTTGTCAAACGCTTCCGCTT 59.971 50.0 0.00 0.0 38.22 4.68 F
333 334 0.032017 ACTCTCCCCCTCGTTGCTAT 60.032 55.0 0.00 0.0 0.00 2.97 F
339 340 0.107456 CCCCTCGTTGCTATGCATCT 59.893 55.0 0.19 0.0 38.76 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1411 0.313672 TGGCGTCACCTTCAATTTGC 59.686 50.0 0.0 0.0 40.22 3.68 R
1386 1435 0.385751 AGATCCATGTCACGCTACCG 59.614 55.0 0.0 0.0 41.14 4.02 R
1847 1898 0.591170 GCAGCGTCCTTGTAAAGCAA 59.409 50.0 0.0 0.0 44.44 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.849942 TGCCCTTCAATGATATGACCG 58.150 47.619 0.00 0.00 0.00 4.79
22 23 2.172505 TGCCCTTCAATGATATGACCGT 59.827 45.455 0.00 0.00 0.00 4.83
23 24 3.214328 GCCCTTCAATGATATGACCGTT 58.786 45.455 0.00 0.00 0.00 4.44
24 25 4.141597 TGCCCTTCAATGATATGACCGTTA 60.142 41.667 0.00 0.00 0.00 3.18
25 26 4.452455 GCCCTTCAATGATATGACCGTTAG 59.548 45.833 0.00 0.00 0.00 2.34
26 27 5.741964 GCCCTTCAATGATATGACCGTTAGA 60.742 44.000 0.00 0.00 0.00 2.10
27 28 6.467677 CCCTTCAATGATATGACCGTTAGAT 58.532 40.000 0.00 0.00 0.00 1.98
28 29 6.369890 CCCTTCAATGATATGACCGTTAGATG 59.630 42.308 0.00 0.00 0.00 2.90
29 30 7.154656 CCTTCAATGATATGACCGTTAGATGA 58.845 38.462 0.00 0.00 0.00 2.92
30 31 7.330454 CCTTCAATGATATGACCGTTAGATGAG 59.670 40.741 0.00 0.00 0.00 2.90
31 32 7.290110 TCAATGATATGACCGTTAGATGAGT 57.710 36.000 0.00 0.00 0.00 3.41
32 33 8.404107 TCAATGATATGACCGTTAGATGAGTA 57.596 34.615 0.00 0.00 0.00 2.59
33 34 8.515414 TCAATGATATGACCGTTAGATGAGTAG 58.485 37.037 0.00 0.00 0.00 2.57
34 35 8.515414 CAATGATATGACCGTTAGATGAGTAGA 58.485 37.037 0.00 0.00 0.00 2.59
35 36 8.815565 ATGATATGACCGTTAGATGAGTAGAT 57.184 34.615 0.00 0.00 0.00 1.98
36 37 9.907229 ATGATATGACCGTTAGATGAGTAGATA 57.093 33.333 0.00 0.00 0.00 1.98
37 38 9.734984 TGATATGACCGTTAGATGAGTAGATAA 57.265 33.333 0.00 0.00 0.00 1.75
41 42 9.698309 ATGACCGTTAGATGAGTAGATAATTTG 57.302 33.333 0.00 0.00 0.00 2.32
42 43 8.141909 TGACCGTTAGATGAGTAGATAATTTGG 58.858 37.037 0.00 0.00 0.00 3.28
43 44 7.442656 ACCGTTAGATGAGTAGATAATTTGGG 58.557 38.462 0.00 0.00 0.00 4.12
44 45 7.289317 ACCGTTAGATGAGTAGATAATTTGGGA 59.711 37.037 0.00 0.00 0.00 4.37
45 46 7.599245 CCGTTAGATGAGTAGATAATTTGGGAC 59.401 40.741 0.00 0.00 0.00 4.46
46 47 8.141909 CGTTAGATGAGTAGATAATTTGGGACA 58.858 37.037 0.00 0.00 0.00 4.02
47 48 9.482627 GTTAGATGAGTAGATAATTTGGGACAG 57.517 37.037 0.00 0.00 42.39 3.51
48 49 6.529220 AGATGAGTAGATAATTTGGGACAGC 58.471 40.000 0.00 0.00 42.39 4.40
49 50 5.957771 TGAGTAGATAATTTGGGACAGCT 57.042 39.130 0.00 0.00 42.39 4.24
50 51 5.674525 TGAGTAGATAATTTGGGACAGCTG 58.325 41.667 13.48 13.48 42.39 4.24
51 52 5.041191 AGTAGATAATTTGGGACAGCTGG 57.959 43.478 19.93 0.00 42.39 4.85
52 53 4.475016 AGTAGATAATTTGGGACAGCTGGT 59.525 41.667 19.93 3.31 42.39 4.00
53 54 3.624777 AGATAATTTGGGACAGCTGGTG 58.375 45.455 19.93 5.12 42.39 4.17
54 55 1.544724 TAATTTGGGACAGCTGGTGC 58.455 50.000 19.93 8.88 42.39 5.01
55 56 0.469705 AATTTGGGACAGCTGGTGCA 60.470 50.000 19.93 0.00 42.39 4.57
56 57 0.251922 ATTTGGGACAGCTGGTGCAT 60.252 50.000 19.93 0.00 42.39 3.96
57 58 0.403655 TTTGGGACAGCTGGTGCATA 59.596 50.000 19.93 0.00 42.39 3.14
58 59 0.035152 TTGGGACAGCTGGTGCATAG 60.035 55.000 19.93 0.00 42.39 2.23
59 60 1.821332 GGGACAGCTGGTGCATAGC 60.821 63.158 19.93 15.70 40.06 2.97
60 61 1.078214 GGACAGCTGGTGCATAGCA 60.078 57.895 19.93 2.53 43.53 3.49
61 62 0.465097 GGACAGCTGGTGCATAGCAT 60.465 55.000 19.93 13.24 41.91 3.79
62 63 1.202687 GGACAGCTGGTGCATAGCATA 60.203 52.381 19.93 0.00 41.91 3.14
63 64 2.141517 GACAGCTGGTGCATAGCATAG 58.858 52.381 19.93 15.70 41.91 2.23
64 65 0.873054 CAGCTGGTGCATAGCATAGC 59.127 55.000 22.70 17.66 45.24 2.97
65 66 0.471191 AGCTGGTGCATAGCATAGCA 59.529 50.000 22.70 7.28 46.34 3.49
66 67 1.134007 AGCTGGTGCATAGCATAGCAA 60.134 47.619 22.70 0.00 46.34 3.91
67 68 3.325918 AGCTGGTGCATAGCATAGCAAC 61.326 50.000 22.70 5.50 46.34 4.17
69 70 0.588252 GGTGCATAGCATAGCAACGG 59.412 55.000 0.00 0.00 43.20 4.44
70 71 1.299541 GTGCATAGCATAGCAACGGT 58.700 50.000 0.00 0.00 43.20 4.83
71 72 1.261619 GTGCATAGCATAGCAACGGTC 59.738 52.381 0.00 0.00 43.20 4.79
72 73 0.508641 GCATAGCATAGCAACGGTCG 59.491 55.000 0.00 0.00 0.00 4.79
73 74 1.139989 CATAGCATAGCAACGGTCGG 58.860 55.000 0.00 0.00 0.00 4.79
74 75 1.037493 ATAGCATAGCAACGGTCGGA 58.963 50.000 0.00 0.00 0.00 4.55
75 76 0.818938 TAGCATAGCAACGGTCGGAA 59.181 50.000 0.00 0.00 0.00 4.30
76 77 0.036765 AGCATAGCAACGGTCGGAAA 60.037 50.000 0.00 0.00 0.00 3.13
77 78 1.014352 GCATAGCAACGGTCGGAAAT 58.986 50.000 0.00 0.00 0.00 2.17
78 79 1.400494 GCATAGCAACGGTCGGAAATT 59.600 47.619 0.00 0.00 0.00 1.82
79 80 2.159435 GCATAGCAACGGTCGGAAATTT 60.159 45.455 0.00 0.00 0.00 1.82
80 81 3.425404 CATAGCAACGGTCGGAAATTTG 58.575 45.455 0.00 0.00 0.00 2.32
81 82 1.600023 AGCAACGGTCGGAAATTTGA 58.400 45.000 0.00 0.00 0.00 2.69
82 83 1.265905 AGCAACGGTCGGAAATTTGAC 59.734 47.619 0.00 0.00 0.00 3.18
83 84 1.265905 GCAACGGTCGGAAATTTGACT 59.734 47.619 0.00 0.00 35.45 3.41
84 85 2.481185 GCAACGGTCGGAAATTTGACTA 59.519 45.455 0.00 0.00 35.45 2.59
85 86 3.126343 GCAACGGTCGGAAATTTGACTAT 59.874 43.478 0.00 0.00 35.45 2.12
86 87 4.726876 GCAACGGTCGGAAATTTGACTATC 60.727 45.833 0.00 0.00 35.45 2.08
87 88 4.196626 ACGGTCGGAAATTTGACTATCA 57.803 40.909 0.00 0.00 35.45 2.15
88 89 4.571919 ACGGTCGGAAATTTGACTATCAA 58.428 39.130 0.00 0.00 34.03 2.57
100 101 5.779241 TTGACTATCAAATTCCTCAGGGT 57.221 39.130 0.00 0.00 32.71 4.34
101 102 5.779241 TGACTATCAAATTCCTCAGGGTT 57.221 39.130 0.00 0.00 0.00 4.11
102 103 6.884472 TGACTATCAAATTCCTCAGGGTTA 57.116 37.500 0.00 0.00 0.00 2.85
103 104 7.451731 TGACTATCAAATTCCTCAGGGTTAT 57.548 36.000 0.00 0.00 0.00 1.89
104 105 7.509546 TGACTATCAAATTCCTCAGGGTTATC 58.490 38.462 0.00 0.00 0.00 1.75
105 106 7.127186 TGACTATCAAATTCCTCAGGGTTATCA 59.873 37.037 0.00 0.00 0.00 2.15
106 107 8.050316 ACTATCAAATTCCTCAGGGTTATCAT 57.950 34.615 0.00 0.00 0.00 2.45
107 108 7.941238 ACTATCAAATTCCTCAGGGTTATCATG 59.059 37.037 0.00 0.00 0.00 3.07
108 109 6.325993 TCAAATTCCTCAGGGTTATCATGA 57.674 37.500 0.00 0.00 0.00 3.07
109 110 6.914665 TCAAATTCCTCAGGGTTATCATGAT 58.085 36.000 13.81 13.81 0.00 2.45
110 111 7.000472 TCAAATTCCTCAGGGTTATCATGATC 59.000 38.462 12.53 0.00 0.00 2.92
111 112 4.982241 TTCCTCAGGGTTATCATGATCC 57.018 45.455 12.53 8.22 0.00 3.36
112 113 4.219392 TCCTCAGGGTTATCATGATCCT 57.781 45.455 12.53 10.06 0.00 3.24
113 114 4.163427 TCCTCAGGGTTATCATGATCCTC 58.837 47.826 12.53 4.20 0.00 3.71
114 115 3.906218 CCTCAGGGTTATCATGATCCTCA 59.094 47.826 12.53 0.00 0.00 3.86
115 116 4.262808 CCTCAGGGTTATCATGATCCTCAC 60.263 50.000 12.53 5.22 0.00 3.51
116 117 4.560739 TCAGGGTTATCATGATCCTCACT 58.439 43.478 12.53 7.50 0.00 3.41
117 118 4.971282 TCAGGGTTATCATGATCCTCACTT 59.029 41.667 12.53 0.00 0.00 3.16
118 119 5.061853 CAGGGTTATCATGATCCTCACTTG 58.938 45.833 12.53 2.91 0.00 3.16
119 120 4.723789 AGGGTTATCATGATCCTCACTTGT 59.276 41.667 12.53 0.00 0.00 3.16
120 121 5.905331 AGGGTTATCATGATCCTCACTTGTA 59.095 40.000 12.53 0.00 0.00 2.41
121 122 6.042552 AGGGTTATCATGATCCTCACTTGTAG 59.957 42.308 12.53 0.00 0.00 2.74
122 123 6.226787 GGTTATCATGATCCTCACTTGTAGG 58.773 44.000 12.53 0.00 35.26 3.18
123 124 3.827008 TCATGATCCTCACTTGTAGGC 57.173 47.619 0.00 0.00 33.84 3.93
124 125 3.106827 TCATGATCCTCACTTGTAGGCA 58.893 45.455 0.00 0.00 33.84 4.75
125 126 3.519107 TCATGATCCTCACTTGTAGGCAA 59.481 43.478 0.00 0.00 33.84 4.52
126 127 4.164796 TCATGATCCTCACTTGTAGGCAAT 59.835 41.667 0.00 0.00 33.84 3.56
127 128 4.142609 TGATCCTCACTTGTAGGCAATC 57.857 45.455 0.00 0.00 33.84 2.67
128 129 3.118261 TGATCCTCACTTGTAGGCAATCC 60.118 47.826 0.00 0.00 33.84 3.01
129 130 2.265367 TCCTCACTTGTAGGCAATCCA 58.735 47.619 0.00 0.00 33.84 3.41
130 131 2.027192 TCCTCACTTGTAGGCAATCCAC 60.027 50.000 0.00 0.00 33.84 4.02
131 132 2.290260 CCTCACTTGTAGGCAATCCACA 60.290 50.000 0.00 0.00 33.65 4.17
132 133 2.744202 CTCACTTGTAGGCAATCCACAC 59.256 50.000 0.00 0.00 33.65 3.82
133 134 2.371841 TCACTTGTAGGCAATCCACACT 59.628 45.455 0.00 0.00 33.65 3.55
134 135 2.485426 CACTTGTAGGCAATCCACACTG 59.515 50.000 0.00 0.00 33.65 3.66
135 136 2.086869 CTTGTAGGCAATCCACACTGG 58.913 52.381 0.00 0.00 39.43 4.00
136 137 0.322456 TGTAGGCAATCCACACTGGC 60.322 55.000 0.00 0.00 37.47 4.85
137 138 1.078497 TAGGCAATCCACACTGGCG 60.078 57.895 0.00 0.00 42.61 5.69
138 139 1.549243 TAGGCAATCCACACTGGCGA 61.549 55.000 0.00 0.00 42.61 5.54
139 140 1.971167 GGCAATCCACACTGGCGAA 60.971 57.895 0.00 0.00 37.47 4.70
140 141 1.315257 GGCAATCCACACTGGCGAAT 61.315 55.000 0.00 0.00 37.47 3.34
141 142 0.527565 GCAATCCACACTGGCGAATT 59.472 50.000 0.00 0.00 37.47 2.17
142 143 1.468054 GCAATCCACACTGGCGAATTC 60.468 52.381 0.00 0.00 37.47 2.17
143 144 1.133025 CAATCCACACTGGCGAATTCC 59.867 52.381 0.00 0.00 37.47 3.01
144 145 0.620556 ATCCACACTGGCGAATTCCT 59.379 50.000 0.00 0.00 37.47 3.36
145 146 1.271856 TCCACACTGGCGAATTCCTA 58.728 50.000 0.00 0.00 37.47 2.94
146 147 1.626321 TCCACACTGGCGAATTCCTAA 59.374 47.619 0.00 0.00 37.47 2.69
147 148 1.737793 CCACACTGGCGAATTCCTAAC 59.262 52.381 0.00 0.00 0.00 2.34
148 149 2.615493 CCACACTGGCGAATTCCTAACT 60.615 50.000 0.00 0.00 0.00 2.24
149 150 2.673368 CACACTGGCGAATTCCTAACTC 59.327 50.000 0.00 0.00 0.00 3.01
150 151 2.280628 CACTGGCGAATTCCTAACTCC 58.719 52.381 0.00 0.00 0.00 3.85
151 152 1.209747 ACTGGCGAATTCCTAACTCCC 59.790 52.381 0.00 0.00 0.00 4.30
152 153 0.544697 TGGCGAATTCCTAACTCCCC 59.455 55.000 0.00 0.00 0.00 4.81
153 154 0.544697 GGCGAATTCCTAACTCCCCA 59.455 55.000 0.00 0.00 0.00 4.96
154 155 1.475213 GGCGAATTCCTAACTCCCCAG 60.475 57.143 0.00 0.00 0.00 4.45
155 156 1.209747 GCGAATTCCTAACTCCCCAGT 59.790 52.381 0.00 0.00 0.00 4.00
156 157 2.742204 GCGAATTCCTAACTCCCCAGTC 60.742 54.545 0.00 0.00 29.93 3.51
157 158 2.500098 CGAATTCCTAACTCCCCAGTCA 59.500 50.000 0.00 0.00 29.93 3.41
158 159 3.430929 CGAATTCCTAACTCCCCAGTCAG 60.431 52.174 0.00 0.00 29.93 3.51
159 160 3.491766 ATTCCTAACTCCCCAGTCAGA 57.508 47.619 0.00 0.00 29.93 3.27
160 161 3.269592 TTCCTAACTCCCCAGTCAGAA 57.730 47.619 0.00 0.00 29.93 3.02
161 162 2.537143 TCCTAACTCCCCAGTCAGAAC 58.463 52.381 0.00 0.00 29.93 3.01
162 163 2.158219 TCCTAACTCCCCAGTCAGAACA 60.158 50.000 0.00 0.00 29.93 3.18
163 164 2.637872 CCTAACTCCCCAGTCAGAACAA 59.362 50.000 0.00 0.00 29.93 2.83
164 165 3.072476 CCTAACTCCCCAGTCAGAACAAA 59.928 47.826 0.00 0.00 29.93 2.83
165 166 3.884037 AACTCCCCAGTCAGAACAAAT 57.116 42.857 0.00 0.00 29.93 2.32
166 167 3.884037 ACTCCCCAGTCAGAACAAATT 57.116 42.857 0.00 0.00 0.00 1.82
167 168 3.756117 ACTCCCCAGTCAGAACAAATTC 58.244 45.455 0.00 0.00 34.78 2.17
168 169 3.084786 CTCCCCAGTCAGAACAAATTCC 58.915 50.000 0.00 0.00 35.18 3.01
169 170 2.716424 TCCCCAGTCAGAACAAATTCCT 59.284 45.455 0.00 0.00 35.18 3.36
170 171 3.084786 CCCCAGTCAGAACAAATTCCTC 58.915 50.000 0.00 0.00 35.18 3.71
171 172 3.498481 CCCCAGTCAGAACAAATTCCTCA 60.498 47.826 0.00 0.00 35.18 3.86
172 173 4.144297 CCCAGTCAGAACAAATTCCTCAA 58.856 43.478 0.00 0.00 35.18 3.02
173 174 4.217118 CCCAGTCAGAACAAATTCCTCAAG 59.783 45.833 0.00 0.00 35.18 3.02
174 175 4.217118 CCAGTCAGAACAAATTCCTCAAGG 59.783 45.833 0.00 0.00 35.18 3.61
175 176 5.065914 CAGTCAGAACAAATTCCTCAAGGA 58.934 41.667 0.00 0.00 43.73 3.36
176 177 5.049129 CAGTCAGAACAAATTCCTCAAGGAC 60.049 44.000 0.00 0.00 45.39 3.85
177 178 4.065088 TCAGAACAAATTCCTCAAGGACG 58.935 43.478 0.00 0.00 45.39 4.79
178 179 3.815401 CAGAACAAATTCCTCAAGGACGT 59.185 43.478 0.00 0.00 45.39 4.34
179 180 4.065789 AGAACAAATTCCTCAAGGACGTC 58.934 43.478 7.13 7.13 45.39 4.34
180 181 3.485463 ACAAATTCCTCAAGGACGTCA 57.515 42.857 18.91 0.00 45.39 4.35
181 182 3.139077 ACAAATTCCTCAAGGACGTCAC 58.861 45.455 18.91 6.91 45.39 3.67
182 183 2.474410 AATTCCTCAAGGACGTCACC 57.526 50.000 18.91 0.62 45.39 4.02
183 184 0.246635 ATTCCTCAAGGACGTCACCG 59.753 55.000 18.91 4.39 45.39 4.94
184 185 0.824595 TTCCTCAAGGACGTCACCGA 60.825 55.000 18.91 8.77 45.39 4.69
185 186 1.213013 CCTCAAGGACGTCACCGAG 59.787 63.158 18.91 17.30 37.39 4.63
186 187 1.444553 CTCAAGGACGTCACCGAGC 60.445 63.158 18.91 0.00 37.88 5.03
187 188 1.867919 CTCAAGGACGTCACCGAGCT 61.868 60.000 18.91 0.38 37.88 4.09
188 189 1.734477 CAAGGACGTCACCGAGCTG 60.734 63.158 18.91 0.00 37.88 4.24
189 190 1.901948 AAGGACGTCACCGAGCTGA 60.902 57.895 18.91 0.00 37.88 4.26
190 191 1.461091 AAGGACGTCACCGAGCTGAA 61.461 55.000 18.91 0.00 37.88 3.02
191 192 1.733399 GGACGTCACCGAGCTGAAC 60.733 63.158 18.91 0.00 37.88 3.18
192 193 2.050351 ACGTCACCGAGCTGAACG 60.050 61.111 0.00 0.00 37.88 3.95
193 194 2.050351 CGTCACCGAGCTGAACGT 60.050 61.111 0.00 0.00 35.63 3.99
194 195 2.365068 CGTCACCGAGCTGAACGTG 61.365 63.158 0.00 0.00 35.63 4.49
195 196 1.299926 GTCACCGAGCTGAACGTGT 60.300 57.895 0.00 0.00 0.00 4.49
196 197 1.299850 TCACCGAGCTGAACGTGTG 60.300 57.895 0.00 0.00 35.24 3.82
197 198 2.661866 ACCGAGCTGAACGTGTGC 60.662 61.111 0.00 0.00 0.00 4.57
198 199 2.661537 CCGAGCTGAACGTGTGCA 60.662 61.111 0.00 0.00 0.00 4.57
199 200 2.546321 CGAGCTGAACGTGTGCAC 59.454 61.111 10.75 10.75 0.00 4.57
200 201 2.237066 CGAGCTGAACGTGTGCACA 61.237 57.895 17.42 17.42 0.00 4.57
201 202 1.761244 CGAGCTGAACGTGTGCACAA 61.761 55.000 23.59 4.27 0.00 3.33
202 203 0.316196 GAGCTGAACGTGTGCACAAC 60.316 55.000 23.59 14.69 0.00 3.32
203 204 0.744414 AGCTGAACGTGTGCACAACT 60.744 50.000 23.59 8.83 0.00 3.16
204 205 0.316196 GCTGAACGTGTGCACAACTC 60.316 55.000 23.59 17.81 0.00 3.01
208 209 3.234390 CGTGTGCACAACTCGGAG 58.766 61.111 23.59 2.83 41.05 4.63
209 210 2.310233 CGTGTGCACAACTCGGAGG 61.310 63.158 23.59 0.00 41.05 4.30
210 211 1.227556 GTGTGCACAACTCGGAGGT 60.228 57.895 23.59 0.00 0.00 3.85
211 212 1.227527 TGTGCACAACTCGGAGGTG 60.228 57.895 21.10 21.10 39.30 4.00
213 214 1.069090 TGCACAACTCGGAGGTGTC 59.931 57.895 25.14 18.94 44.04 3.67
214 215 2.022129 GCACAACTCGGAGGTGTCG 61.022 63.158 25.14 19.93 44.04 4.35
215 216 1.362717 CACAACTCGGAGGTGTCGT 59.637 57.895 25.14 2.02 44.04 4.34
216 217 0.594602 CACAACTCGGAGGTGTCGTA 59.405 55.000 25.14 0.00 44.04 3.43
217 218 0.595095 ACAACTCGGAGGTGTCGTAC 59.405 55.000 22.55 0.00 44.04 3.67
218 219 0.453950 CAACTCGGAGGTGTCGTACG 60.454 60.000 14.93 9.53 0.00 3.67
219 220 0.886490 AACTCGGAGGTGTCGTACGT 60.886 55.000 16.05 0.00 0.00 3.57
220 221 0.886490 ACTCGGAGGTGTCGTACGTT 60.886 55.000 16.05 0.00 0.00 3.99
221 222 0.179205 CTCGGAGGTGTCGTACGTTC 60.179 60.000 16.05 10.37 0.00 3.95
222 223 1.510623 CGGAGGTGTCGTACGTTCG 60.511 63.158 16.05 8.41 39.50 3.95
223 224 1.154150 GGAGGTGTCGTACGTTCGG 60.154 63.158 16.05 0.00 0.00 4.30
224 225 1.576421 GAGGTGTCGTACGTTCGGT 59.424 57.895 16.05 0.00 0.00 4.69
225 226 0.796312 GAGGTGTCGTACGTTCGGTA 59.204 55.000 16.05 1.40 0.00 4.02
226 227 0.517316 AGGTGTCGTACGTTCGGTAC 59.483 55.000 16.05 12.81 46.54 3.34
234 235 2.444351 GTACGTTCGGTACTTGATCGG 58.556 52.381 17.26 0.00 46.50 4.18
235 236 0.883833 ACGTTCGGTACTTGATCGGT 59.116 50.000 17.26 0.00 33.92 4.69
236 237 1.135575 ACGTTCGGTACTTGATCGGTC 60.136 52.381 17.26 0.00 33.92 4.79
237 238 1.542544 GTTCGGTACTTGATCGGTCG 58.457 55.000 0.00 0.00 30.29 4.79
238 239 0.452987 TTCGGTACTTGATCGGTCGG 59.547 55.000 0.00 0.00 30.29 4.79
239 240 0.392863 TCGGTACTTGATCGGTCGGA 60.393 55.000 0.00 0.00 30.29 4.55
240 241 0.029035 CGGTACTTGATCGGTCGGAG 59.971 60.000 0.00 0.00 0.00 4.63
241 242 0.248949 GGTACTTGATCGGTCGGAGC 60.249 60.000 0.00 0.00 0.00 4.70
242 243 0.739561 GTACTTGATCGGTCGGAGCT 59.260 55.000 5.58 0.00 30.59 4.09
243 244 1.945394 GTACTTGATCGGTCGGAGCTA 59.055 52.381 5.58 0.00 30.59 3.32
244 245 1.025812 ACTTGATCGGTCGGAGCTAG 58.974 55.000 5.58 5.76 39.36 3.42
245 246 1.309950 CTTGATCGGTCGGAGCTAGA 58.690 55.000 5.58 0.00 36.23 2.43
246 247 1.676529 CTTGATCGGTCGGAGCTAGAA 59.323 52.381 5.58 0.00 36.23 2.10
247 248 1.309950 TGATCGGTCGGAGCTAGAAG 58.690 55.000 5.58 0.00 30.59 2.85
248 249 1.134189 TGATCGGTCGGAGCTAGAAGA 60.134 52.381 5.58 0.00 30.59 2.87
249 250 1.948145 GATCGGTCGGAGCTAGAAGAA 59.052 52.381 5.58 0.00 0.00 2.52
250 251 1.380524 TCGGTCGGAGCTAGAAGAAG 58.619 55.000 5.58 0.00 0.00 2.85
251 252 1.096416 CGGTCGGAGCTAGAAGAAGT 58.904 55.000 5.58 0.00 0.00 3.01
252 253 1.473278 CGGTCGGAGCTAGAAGAAGTT 59.527 52.381 5.58 0.00 0.00 2.66
253 254 2.478200 CGGTCGGAGCTAGAAGAAGTTC 60.478 54.545 5.58 0.00 0.00 3.01
254 255 2.478200 GGTCGGAGCTAGAAGAAGTTCG 60.478 54.545 0.00 0.00 37.79 3.95
255 256 2.419324 GTCGGAGCTAGAAGAAGTTCGA 59.581 50.000 0.00 0.00 37.79 3.71
256 257 2.419324 TCGGAGCTAGAAGAAGTTCGAC 59.581 50.000 0.00 0.00 37.79 4.20
257 258 2.420722 CGGAGCTAGAAGAAGTTCGACT 59.579 50.000 0.00 3.92 37.79 4.18
258 259 3.622163 CGGAGCTAGAAGAAGTTCGACTA 59.378 47.826 0.00 4.84 37.79 2.59
259 260 4.494526 CGGAGCTAGAAGAAGTTCGACTAC 60.495 50.000 0.00 0.00 37.79 2.73
260 261 4.395542 GGAGCTAGAAGAAGTTCGACTACA 59.604 45.833 0.00 0.00 37.79 2.74
261 262 5.066764 GGAGCTAGAAGAAGTTCGACTACAT 59.933 44.000 0.00 0.00 37.79 2.29
262 263 6.126568 AGCTAGAAGAAGTTCGACTACATC 57.873 41.667 0.00 0.00 37.79 3.06
263 264 5.648526 AGCTAGAAGAAGTTCGACTACATCA 59.351 40.000 0.00 0.00 37.79 3.07
264 265 6.151312 AGCTAGAAGAAGTTCGACTACATCAA 59.849 38.462 0.00 0.00 37.79 2.57
265 266 6.251801 GCTAGAAGAAGTTCGACTACATCAAC 59.748 42.308 0.00 0.00 37.79 3.18
266 267 5.471257 AGAAGAAGTTCGACTACATCAACC 58.529 41.667 0.00 0.00 37.79 3.77
267 268 3.834610 AGAAGTTCGACTACATCAACCG 58.165 45.455 0.00 0.00 0.00 4.44
268 269 1.992170 AGTTCGACTACATCAACCGC 58.008 50.000 0.00 0.00 0.00 5.68
269 270 0.638746 GTTCGACTACATCAACCGCG 59.361 55.000 0.00 0.00 0.00 6.46
270 271 0.241749 TTCGACTACATCAACCGCGT 59.758 50.000 4.92 0.00 0.00 6.01
271 272 0.241749 TCGACTACATCAACCGCGTT 59.758 50.000 4.92 0.00 0.00 4.84
272 273 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
273 274 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
274 275 1.389106 GACTACATCAACCGCGTTGTC 59.611 52.381 16.97 5.64 43.23 3.18
275 276 1.269883 ACTACATCAACCGCGTTGTCA 60.270 47.619 16.97 4.13 43.23 3.58
276 277 1.795872 CTACATCAACCGCGTTGTCAA 59.204 47.619 16.97 3.56 43.23 3.18
277 278 1.018148 ACATCAACCGCGTTGTCAAA 58.982 45.000 16.97 3.28 43.23 2.69
278 279 1.268335 ACATCAACCGCGTTGTCAAAC 60.268 47.619 16.97 0.00 43.23 2.93
286 287 4.205584 GTTGTCAAACGCTTCCGC 57.794 55.556 0.00 0.00 38.22 5.54
287 288 1.647084 GTTGTCAAACGCTTCCGCT 59.353 52.632 0.00 0.00 38.22 5.52
288 289 0.028902 GTTGTCAAACGCTTCCGCTT 59.971 50.000 0.00 0.00 38.22 4.68
289 290 1.262151 GTTGTCAAACGCTTCCGCTTA 59.738 47.619 0.00 0.00 38.22 3.09
290 291 0.863144 TGTCAAACGCTTCCGCTTAC 59.137 50.000 0.00 0.00 38.22 2.34
291 292 0.179258 GTCAAACGCTTCCGCTTACG 60.179 55.000 0.00 0.00 38.22 3.18
312 313 3.813443 GGTCTACGAGGGTACATAGACA 58.187 50.000 15.98 0.00 43.51 3.41
313 314 3.563390 GGTCTACGAGGGTACATAGACAC 59.437 52.174 15.98 7.41 43.51 3.67
314 315 4.194640 GTCTACGAGGGTACATAGACACA 58.805 47.826 12.11 0.00 42.02 3.72
315 316 4.034975 GTCTACGAGGGTACATAGACACAC 59.965 50.000 12.11 0.00 42.02 3.82
316 317 3.083122 ACGAGGGTACATAGACACACT 57.917 47.619 0.00 0.00 0.00 3.55
317 318 3.015327 ACGAGGGTACATAGACACACTC 58.985 50.000 0.00 0.00 41.01 3.51
318 319 3.280295 CGAGGGTACATAGACACACTCT 58.720 50.000 2.81 0.00 42.03 3.24
319 320 3.312973 CGAGGGTACATAGACACACTCTC 59.687 52.174 2.81 0.00 42.03 3.20
320 321 3.633065 GAGGGTACATAGACACACTCTCC 59.367 52.174 0.00 0.00 41.18 3.71
321 322 2.694109 GGGTACATAGACACACTCTCCC 59.306 54.545 0.00 0.00 0.00 4.30
322 323 2.694109 GGTACATAGACACACTCTCCCC 59.306 54.545 0.00 0.00 0.00 4.81
323 324 1.867363 ACATAGACACACTCTCCCCC 58.133 55.000 0.00 0.00 0.00 5.40
324 325 1.362932 ACATAGACACACTCTCCCCCT 59.637 52.381 0.00 0.00 0.00 4.79
325 326 2.035632 CATAGACACACTCTCCCCCTC 58.964 57.143 0.00 0.00 0.00 4.30
326 327 0.034380 TAGACACACTCTCCCCCTCG 60.034 60.000 0.00 0.00 0.00 4.63
327 328 1.606889 GACACACTCTCCCCCTCGT 60.607 63.158 0.00 0.00 0.00 4.18
328 329 1.152312 ACACACTCTCCCCCTCGTT 60.152 57.895 0.00 0.00 0.00 3.85
329 330 1.293498 CACACTCTCCCCCTCGTTG 59.707 63.158 0.00 0.00 0.00 4.10
330 331 2.266055 CACTCTCCCCCTCGTTGC 59.734 66.667 0.00 0.00 0.00 4.17
331 332 2.120718 ACTCTCCCCCTCGTTGCT 59.879 61.111 0.00 0.00 0.00 3.91
332 333 0.970937 CACTCTCCCCCTCGTTGCTA 60.971 60.000 0.00 0.00 0.00 3.49
333 334 0.032017 ACTCTCCCCCTCGTTGCTAT 60.032 55.000 0.00 0.00 0.00 2.97
334 335 0.390860 CTCTCCCCCTCGTTGCTATG 59.609 60.000 0.00 0.00 0.00 2.23
335 336 1.227674 CTCCCCCTCGTTGCTATGC 60.228 63.158 0.00 0.00 0.00 3.14
336 337 1.971505 CTCCCCCTCGTTGCTATGCA 61.972 60.000 0.00 0.00 36.47 3.96
337 338 1.149174 CCCCCTCGTTGCTATGCAT 59.851 57.895 3.79 3.79 38.76 3.96
338 339 0.886490 CCCCCTCGTTGCTATGCATC 60.886 60.000 0.19 0.00 38.76 3.91
339 340 0.107456 CCCCTCGTTGCTATGCATCT 59.893 55.000 0.19 0.00 38.76 2.90
340 341 1.506493 CCCTCGTTGCTATGCATCTC 58.494 55.000 0.19 0.00 38.76 2.75
341 342 1.506493 CCTCGTTGCTATGCATCTCC 58.494 55.000 0.19 0.00 38.76 3.71
342 343 1.202568 CCTCGTTGCTATGCATCTCCA 60.203 52.381 0.19 0.00 38.76 3.86
343 344 2.549563 CCTCGTTGCTATGCATCTCCAT 60.550 50.000 0.19 0.00 38.76 3.41
344 345 2.479275 CTCGTTGCTATGCATCTCCATG 59.521 50.000 0.19 0.00 38.76 3.66
345 346 1.534163 CGTTGCTATGCATCTCCATGG 59.466 52.381 4.97 4.97 38.76 3.66
346 347 2.807837 CGTTGCTATGCATCTCCATGGA 60.808 50.000 15.27 15.27 38.76 3.41
347 348 3.418995 GTTGCTATGCATCTCCATGGAT 58.581 45.455 16.63 1.02 43.17 3.41
348 349 4.582869 GTTGCTATGCATCTCCATGGATA 58.417 43.478 16.63 8.92 41.14 2.59
354 355 5.977821 ATGCATCTCCATGGATAGATCAT 57.022 39.130 16.63 15.86 39.19 2.45
355 356 5.774102 TGCATCTCCATGGATAGATCATT 57.226 39.130 16.63 0.00 29.93 2.57
356 357 5.497474 TGCATCTCCATGGATAGATCATTG 58.503 41.667 16.63 6.44 29.93 2.82
357 358 4.335874 GCATCTCCATGGATAGATCATTGC 59.664 45.833 16.63 12.45 29.93 3.56
358 359 4.198028 TCTCCATGGATAGATCATTGCG 57.802 45.455 16.63 0.00 0.00 4.85
359 360 3.580022 TCTCCATGGATAGATCATTGCGT 59.420 43.478 16.63 0.00 0.00 5.24
360 361 3.667360 TCCATGGATAGATCATTGCGTG 58.333 45.455 11.44 0.00 0.00 5.34
361 362 3.071457 TCCATGGATAGATCATTGCGTGT 59.929 43.478 11.44 0.00 0.00 4.49
362 363 3.187842 CCATGGATAGATCATTGCGTGTG 59.812 47.826 5.56 0.00 0.00 3.82
363 364 2.212652 TGGATAGATCATTGCGTGTGC 58.787 47.619 0.00 0.00 43.20 4.57
394 395 5.613358 TTTTTGTTTTCCATGCAACGTTT 57.387 30.435 0.00 0.00 0.00 3.60
395 396 4.849111 TTTGTTTTCCATGCAACGTTTC 57.151 36.364 0.00 0.00 0.00 2.78
396 397 2.815478 TGTTTTCCATGCAACGTTTCC 58.185 42.857 0.00 0.00 0.00 3.13
397 398 2.131972 GTTTTCCATGCAACGTTTCCC 58.868 47.619 0.00 0.00 0.00 3.97
398 399 1.403814 TTTCCATGCAACGTTTCCCA 58.596 45.000 0.00 0.00 0.00 4.37
399 400 1.403814 TTCCATGCAACGTTTCCCAA 58.596 45.000 0.00 0.00 0.00 4.12
400 401 0.671251 TCCATGCAACGTTTCCCAAC 59.329 50.000 0.00 0.00 0.00 3.77
401 402 0.387202 CCATGCAACGTTTCCCAACA 59.613 50.000 0.00 0.00 32.54 3.33
771 782 3.121019 CGAGATCGTGGGGGAGAC 58.879 66.667 0.00 0.00 34.11 3.36
777 788 3.307906 CGTGGGGGAGACGGAACA 61.308 66.667 0.00 0.00 33.08 3.18
781 792 1.295746 GGGGGAGACGGAACAAGAC 59.704 63.158 0.00 0.00 0.00 3.01
782 793 1.477685 GGGGGAGACGGAACAAGACA 61.478 60.000 0.00 0.00 0.00 3.41
837 848 1.743995 GTACGCGGTGAAAGGCCAT 60.744 57.895 12.47 0.00 0.00 4.40
843 854 2.626467 GGTGAAAGGCCATCCCCCT 61.626 63.158 5.01 0.00 0.00 4.79
878 890 1.477553 AGGTAATGTCGGGAGCGTTA 58.522 50.000 0.00 0.00 0.00 3.18
880 892 1.564207 GTAATGTCGGGAGCGTTACC 58.436 55.000 0.00 0.00 34.88 2.85
1004 1016 0.179006 CCCTTTCTCCTAGCCATGGC 60.179 60.000 30.12 30.12 42.33 4.40
1044 1056 0.984230 AGGATGCGGAAAAGACAGGA 59.016 50.000 0.00 0.00 0.00 3.86
1071 1083 0.243907 CGGAGAAGTCGAAGAAGGCA 59.756 55.000 0.00 0.00 39.69 4.75
1072 1084 1.734047 CGGAGAAGTCGAAGAAGGCAG 60.734 57.143 0.00 0.00 39.69 4.85
1113 1125 0.462375 AAAACACTTGTTTCCCGCCC 59.538 50.000 7.78 0.00 46.47 6.13
1136 1148 2.405172 GTTGAAAGTCTCCGACCTCAC 58.595 52.381 0.00 0.00 32.18 3.51
1149 1161 3.834799 CTCACGGCCCGGTACTCC 61.835 72.222 8.57 0.00 0.00 3.85
1201 1213 2.954753 GCTGTCGAAGTGTTGCCCG 61.955 63.158 0.00 0.00 0.00 6.13
1209 1221 1.319614 AAGTGTTGCCCGCAAGTGTT 61.320 50.000 1.53 0.00 36.52 3.32
1214 1226 4.043200 GCCCGCAAGTGTTCCTGC 62.043 66.667 0.00 0.00 0.00 4.85
1247 1259 1.737793 GTTCGCATTCTTCACCGGATT 59.262 47.619 9.46 0.00 0.00 3.01
1249 1261 1.737236 TCGCATTCTTCACCGGATTTG 59.263 47.619 9.46 0.00 0.00 2.32
1281 1293 2.660064 GCTCCCTCCTTTCTCGGCA 61.660 63.158 0.00 0.00 0.00 5.69
1300 1312 3.490419 GGCATTCTTTGATGAGGTGATGC 60.490 47.826 0.00 0.00 0.00 3.91
1307 1319 2.978452 GATGAGGTGATGCGGACCCG 62.978 65.000 3.73 3.73 43.09 5.28
1317 1329 0.958382 TGCGGACCCGGAATTTTCTG 60.958 55.000 0.73 0.00 36.72 3.02
1324 1336 2.578683 CGGAATTTTCTGGGGGTGG 58.421 57.895 0.00 0.00 0.00 4.61
1325 1337 0.251608 CGGAATTTTCTGGGGGTGGT 60.252 55.000 0.00 0.00 0.00 4.16
1327 1339 0.608130 GAATTTTCTGGGGGTGGTGC 59.392 55.000 0.00 0.00 0.00 5.01
1362 1411 3.175929 GTTCCGCCATTTTTATTCACCG 58.824 45.455 0.00 0.00 0.00 4.94
1363 1412 1.133407 TCCGCCATTTTTATTCACCGC 59.867 47.619 0.00 0.00 0.00 5.68
1365 1414 2.600731 CGCCATTTTTATTCACCGCAA 58.399 42.857 0.00 0.00 0.00 4.85
1386 1435 0.036388 TTGAAGGTGACGCCATCTCC 60.036 55.000 11.31 0.00 40.74 3.71
1409 1458 2.240500 GCGTGACATGGATCTCCGC 61.241 63.158 0.00 1.78 39.43 5.54
1441 1490 0.325296 ACCCTTGAGATGGTAGGCGA 60.325 55.000 0.00 0.00 31.61 5.54
1451 1500 3.452627 AGATGGTAGGCGATGACTTTCTT 59.547 43.478 0.00 0.00 0.00 2.52
1457 1506 0.794605 GCGATGACTTTCTTTGGCGC 60.795 55.000 0.00 0.00 36.35 6.53
1604 1654 3.640967 TCCCACAGGAACTTTTTCAATGG 59.359 43.478 0.00 0.00 40.08 3.16
1651 1701 5.946377 AGAAAATCTAACATCCACTCCAACC 59.054 40.000 0.00 0.00 0.00 3.77
1653 1703 4.762289 ATCTAACATCCACTCCAACCTC 57.238 45.455 0.00 0.00 0.00 3.85
1655 1705 2.867109 AACATCCACTCCAACCTCTG 57.133 50.000 0.00 0.00 0.00 3.35
1665 1715 5.301805 CCACTCCAACCTCTGTTTACAATTT 59.698 40.000 0.00 0.00 30.42 1.82
1669 1719 7.342026 ACTCCAACCTCTGTTTACAATTTCTTT 59.658 33.333 0.00 0.00 30.42 2.52
1670 1720 7.488322 TCCAACCTCTGTTTACAATTTCTTTG 58.512 34.615 0.00 0.00 35.38 2.77
1671 1721 6.200854 CCAACCTCTGTTTACAATTTCTTTGC 59.799 38.462 0.00 0.00 33.63 3.68
1675 1725 8.040727 ACCTCTGTTTACAATTTCTTTGCTTTT 58.959 29.630 0.00 0.00 39.03 2.27
1677 1727 9.305925 CTCTGTTTACAATTTCTTTGCTTTTCT 57.694 29.630 0.00 0.00 39.03 2.52
1710 1760 7.500992 TCAAACACTCCTTGCTAATCCTATAG 58.499 38.462 0.00 0.00 0.00 1.31
1728 1779 4.736611 ATAGGATTCAAGTGGGCATGAT 57.263 40.909 0.00 0.00 0.00 2.45
1732 1783 4.079558 AGGATTCAAGTGGGCATGATACTT 60.080 41.667 0.00 0.05 35.18 2.24
1783 1834 7.968246 TGTTTTCAAAATTCTGCGAATCAAAA 58.032 26.923 4.63 5.75 0.00 2.44
1804 1855 1.688211 GCCCTGAAAAGGAGGAGCT 59.312 57.895 0.00 0.00 31.48 4.09
1805 1856 0.912486 GCCCTGAAAAGGAGGAGCTA 59.088 55.000 0.00 0.00 31.48 3.32
1806 1857 1.492599 GCCCTGAAAAGGAGGAGCTAT 59.507 52.381 0.00 0.00 31.48 2.97
1807 1858 2.747799 GCCCTGAAAAGGAGGAGCTATG 60.748 54.545 0.00 0.00 31.48 2.23
1808 1859 2.507471 CCCTGAAAAGGAGGAGCTATGT 59.493 50.000 0.00 0.00 31.48 2.29
1809 1860 3.054065 CCCTGAAAAGGAGGAGCTATGTT 60.054 47.826 0.00 0.00 31.48 2.71
1810 1861 4.568592 CCCTGAAAAGGAGGAGCTATGTTT 60.569 45.833 0.00 0.00 31.48 2.83
1811 1862 5.012893 CCTGAAAAGGAGGAGCTATGTTTT 58.987 41.667 0.00 0.00 31.48 2.43
1812 1863 5.124617 CCTGAAAAGGAGGAGCTATGTTTTC 59.875 44.000 10.23 10.23 35.44 2.29
1813 1864 5.630121 TGAAAAGGAGGAGCTATGTTTTCA 58.370 37.500 13.66 13.66 40.04 2.69
1814 1865 6.068010 TGAAAAGGAGGAGCTATGTTTTCAA 58.932 36.000 14.64 4.65 39.62 2.69
1815 1866 6.549364 TGAAAAGGAGGAGCTATGTTTTCAAA 59.451 34.615 14.64 0.46 39.62 2.69
1816 1867 6.976934 AAAGGAGGAGCTATGTTTTCAAAA 57.023 33.333 0.00 0.00 0.00 2.44
1817 1868 7.544804 AAAGGAGGAGCTATGTTTTCAAAAT 57.455 32.000 0.00 0.00 0.00 1.82
1818 1869 7.544804 AAGGAGGAGCTATGTTTTCAAAATT 57.455 32.000 0.00 0.00 0.00 1.82
1819 1870 7.163001 AGGAGGAGCTATGTTTTCAAAATTC 57.837 36.000 0.00 0.00 0.00 2.17
1820 1871 6.950619 AGGAGGAGCTATGTTTTCAAAATTCT 59.049 34.615 0.00 0.00 0.00 2.40
1821 1872 7.031975 GGAGGAGCTATGTTTTCAAAATTCTG 58.968 38.462 0.00 0.00 0.00 3.02
1822 1873 6.393171 AGGAGCTATGTTTTCAAAATTCTGC 58.607 36.000 0.00 0.00 0.00 4.26
1823 1874 6.210185 AGGAGCTATGTTTTCAAAATTCTGCT 59.790 34.615 0.00 3.98 0.00 4.24
1824 1875 6.870439 GGAGCTATGTTTTCAAAATTCTGCTT 59.130 34.615 0.00 0.00 0.00 3.91
1825 1876 7.386025 GGAGCTATGTTTTCAAAATTCTGCTTT 59.614 33.333 0.00 0.00 0.00 3.51
1826 1877 8.667076 AGCTATGTTTTCAAAATTCTGCTTTT 57.333 26.923 0.00 0.00 0.00 2.27
1827 1878 9.112725 AGCTATGTTTTCAAAATTCTGCTTTTT 57.887 25.926 0.00 0.00 0.00 1.94
1828 1879 9.373750 GCTATGTTTTCAAAATTCTGCTTTTTC 57.626 29.630 0.00 0.00 0.00 2.29
1839 1890 9.836864 AAAATTCTGCTTTTTCTATTCCTTTGT 57.163 25.926 0.00 0.00 0.00 2.83
1840 1891 9.836864 AAATTCTGCTTTTTCTATTCCTTTGTT 57.163 25.926 0.00 0.00 0.00 2.83
1845 1896 9.912634 CTGCTTTTTCTATTCCTTTGTTAATCA 57.087 29.630 0.00 0.00 0.00 2.57
1856 1907 9.995003 ATTCCTTTGTTAATCATTTGCTTTACA 57.005 25.926 0.00 0.00 0.00 2.41
1857 1908 9.823647 TTCCTTTGTTAATCATTTGCTTTACAA 57.176 25.926 0.00 0.00 36.13 2.41
1858 1909 9.474920 TCCTTTGTTAATCATTTGCTTTACAAG 57.525 29.630 0.00 0.00 40.06 3.16
1859 1910 8.711457 CCTTTGTTAATCATTTGCTTTACAAGG 58.289 33.333 0.00 0.00 40.06 3.61
1860 1911 9.474920 CTTTGTTAATCATTTGCTTTACAAGGA 57.525 29.630 3.54 0.00 40.06 3.36
1861 1912 8.810652 TTGTTAATCATTTGCTTTACAAGGAC 57.189 30.769 0.00 0.00 40.06 3.85
1862 1913 7.081349 TGTTAATCATTTGCTTTACAAGGACG 58.919 34.615 0.00 0.00 40.06 4.79
1863 1914 3.552604 TCATTTGCTTTACAAGGACGC 57.447 42.857 0.00 0.00 40.06 5.19
1864 1915 3.146066 TCATTTGCTTTACAAGGACGCT 58.854 40.909 0.00 0.00 40.06 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.181440 ACGGTCATATCATTGAAGGGCAT 60.181 43.478 0.00 0.00 0.00 4.40
1 2 2.172505 ACGGTCATATCATTGAAGGGCA 59.827 45.455 0.00 0.00 0.00 5.36
2 3 2.851195 ACGGTCATATCATTGAAGGGC 58.149 47.619 0.00 0.00 0.00 5.19
3 4 5.853936 TCTAACGGTCATATCATTGAAGGG 58.146 41.667 0.00 0.00 0.00 3.95
4 5 7.154656 TCATCTAACGGTCATATCATTGAAGG 58.845 38.462 0.00 0.00 0.00 3.46
5 6 7.869937 ACTCATCTAACGGTCATATCATTGAAG 59.130 37.037 0.00 0.00 0.00 3.02
6 7 7.726216 ACTCATCTAACGGTCATATCATTGAA 58.274 34.615 0.00 0.00 0.00 2.69
7 8 7.290110 ACTCATCTAACGGTCATATCATTGA 57.710 36.000 0.00 0.00 0.00 2.57
8 9 8.515414 TCTACTCATCTAACGGTCATATCATTG 58.485 37.037 0.00 0.00 0.00 2.82
9 10 8.637196 TCTACTCATCTAACGGTCATATCATT 57.363 34.615 0.00 0.00 0.00 2.57
10 11 8.815565 ATCTACTCATCTAACGGTCATATCAT 57.184 34.615 0.00 0.00 0.00 2.45
11 12 9.734984 TTATCTACTCATCTAACGGTCATATCA 57.265 33.333 0.00 0.00 0.00 2.15
15 16 9.698309 CAAATTATCTACTCATCTAACGGTCAT 57.302 33.333 0.00 0.00 0.00 3.06
16 17 8.141909 CCAAATTATCTACTCATCTAACGGTCA 58.858 37.037 0.00 0.00 0.00 4.02
17 18 7.599245 CCCAAATTATCTACTCATCTAACGGTC 59.401 40.741 0.00 0.00 0.00 4.79
18 19 7.289317 TCCCAAATTATCTACTCATCTAACGGT 59.711 37.037 0.00 0.00 0.00 4.83
19 20 7.599245 GTCCCAAATTATCTACTCATCTAACGG 59.401 40.741 0.00 0.00 0.00 4.44
20 21 8.141909 TGTCCCAAATTATCTACTCATCTAACG 58.858 37.037 0.00 0.00 0.00 3.18
21 22 9.482627 CTGTCCCAAATTATCTACTCATCTAAC 57.517 37.037 0.00 0.00 0.00 2.34
22 23 8.150945 GCTGTCCCAAATTATCTACTCATCTAA 58.849 37.037 0.00 0.00 0.00 2.10
23 24 7.510685 AGCTGTCCCAAATTATCTACTCATCTA 59.489 37.037 0.00 0.00 0.00 1.98
24 25 6.328672 AGCTGTCCCAAATTATCTACTCATCT 59.671 38.462 0.00 0.00 0.00 2.90
25 26 6.426328 CAGCTGTCCCAAATTATCTACTCATC 59.574 42.308 5.25 0.00 0.00 2.92
26 27 6.294473 CAGCTGTCCCAAATTATCTACTCAT 58.706 40.000 5.25 0.00 0.00 2.90
27 28 5.396772 CCAGCTGTCCCAAATTATCTACTCA 60.397 44.000 13.81 0.00 0.00 3.41
28 29 5.059833 CCAGCTGTCCCAAATTATCTACTC 58.940 45.833 13.81 0.00 0.00 2.59
29 30 4.475016 ACCAGCTGTCCCAAATTATCTACT 59.525 41.667 13.81 0.00 0.00 2.57
30 31 4.576463 CACCAGCTGTCCCAAATTATCTAC 59.424 45.833 13.81 0.00 0.00 2.59
31 32 4.780815 CACCAGCTGTCCCAAATTATCTA 58.219 43.478 13.81 0.00 0.00 1.98
32 33 3.624777 CACCAGCTGTCCCAAATTATCT 58.375 45.455 13.81 0.00 0.00 1.98
33 34 2.099756 GCACCAGCTGTCCCAAATTATC 59.900 50.000 13.81 0.00 37.91 1.75
34 35 2.102578 GCACCAGCTGTCCCAAATTAT 58.897 47.619 13.81 0.00 37.91 1.28
35 36 1.202989 TGCACCAGCTGTCCCAAATTA 60.203 47.619 13.81 0.00 42.74 1.40
36 37 0.469705 TGCACCAGCTGTCCCAAATT 60.470 50.000 13.81 0.00 42.74 1.82
37 38 0.251922 ATGCACCAGCTGTCCCAAAT 60.252 50.000 13.81 0.00 42.74 2.32
38 39 0.403655 TATGCACCAGCTGTCCCAAA 59.596 50.000 13.81 0.00 42.74 3.28
39 40 0.035152 CTATGCACCAGCTGTCCCAA 60.035 55.000 13.81 0.00 42.74 4.12
40 41 1.603842 CTATGCACCAGCTGTCCCA 59.396 57.895 13.81 6.43 42.74 4.37
41 42 1.821332 GCTATGCACCAGCTGTCCC 60.821 63.158 13.81 0.21 42.74 4.46
42 43 0.465097 ATGCTATGCACCAGCTGTCC 60.465 55.000 19.70 0.59 43.04 4.02
43 44 2.141517 CTATGCTATGCACCAGCTGTC 58.858 52.381 19.70 1.86 43.04 3.51
44 45 1.813092 GCTATGCTATGCACCAGCTGT 60.813 52.381 19.70 12.43 43.04 4.40
45 46 0.873054 GCTATGCTATGCACCAGCTG 59.127 55.000 19.70 6.78 43.04 4.24
46 47 0.471191 TGCTATGCTATGCACCAGCT 59.529 50.000 19.70 10.15 44.81 4.24
47 48 1.002033 GTTGCTATGCTATGCACCAGC 60.002 52.381 13.89 13.89 44.79 4.85
48 49 1.262417 CGTTGCTATGCTATGCACCAG 59.738 52.381 0.00 0.00 43.04 4.00
49 50 1.298602 CGTTGCTATGCTATGCACCA 58.701 50.000 0.00 0.00 43.04 4.17
50 51 0.588252 CCGTTGCTATGCTATGCACC 59.412 55.000 0.00 0.00 43.04 5.01
51 52 1.261619 GACCGTTGCTATGCTATGCAC 59.738 52.381 0.00 0.00 43.04 4.57
52 53 1.581934 GACCGTTGCTATGCTATGCA 58.418 50.000 0.00 0.00 44.86 3.96
53 54 0.508641 CGACCGTTGCTATGCTATGC 59.491 55.000 0.00 0.00 0.00 3.14
54 55 1.139989 CCGACCGTTGCTATGCTATG 58.860 55.000 0.00 0.00 0.00 2.23
55 56 1.037493 TCCGACCGTTGCTATGCTAT 58.963 50.000 0.00 0.00 0.00 2.97
56 57 0.818938 TTCCGACCGTTGCTATGCTA 59.181 50.000 0.00 0.00 0.00 3.49
57 58 0.036765 TTTCCGACCGTTGCTATGCT 60.037 50.000 0.00 0.00 0.00 3.79
58 59 1.014352 ATTTCCGACCGTTGCTATGC 58.986 50.000 0.00 0.00 0.00 3.14
59 60 3.126171 TCAAATTTCCGACCGTTGCTATG 59.874 43.478 0.00 0.00 0.00 2.23
60 61 3.126343 GTCAAATTTCCGACCGTTGCTAT 59.874 43.478 0.00 0.00 0.00 2.97
61 62 2.481185 GTCAAATTTCCGACCGTTGCTA 59.519 45.455 0.00 0.00 0.00 3.49
62 63 1.265905 GTCAAATTTCCGACCGTTGCT 59.734 47.619 0.00 0.00 0.00 3.91
63 64 1.265905 AGTCAAATTTCCGACCGTTGC 59.734 47.619 5.32 0.00 32.33 4.17
64 65 4.390603 TGATAGTCAAATTTCCGACCGTTG 59.609 41.667 5.32 0.00 32.33 4.10
65 66 4.571919 TGATAGTCAAATTTCCGACCGTT 58.428 39.130 5.32 0.00 32.33 4.44
66 67 4.196626 TGATAGTCAAATTTCCGACCGT 57.803 40.909 5.32 0.00 32.33 4.83
67 68 5.539582 TTTGATAGTCAAATTTCCGACCG 57.460 39.130 5.32 0.00 41.02 4.79
76 77 6.735556 ACCCTGAGGAATTTGATAGTCAAAT 58.264 36.000 0.00 11.11 46.18 2.32
77 78 6.139679 ACCCTGAGGAATTTGATAGTCAAA 57.860 37.500 0.00 7.49 42.63 2.69
78 79 5.779241 ACCCTGAGGAATTTGATAGTCAA 57.221 39.130 0.00 0.00 33.70 3.18
79 80 5.779241 AACCCTGAGGAATTTGATAGTCA 57.221 39.130 0.00 0.00 36.73 3.41
80 81 7.509546 TGATAACCCTGAGGAATTTGATAGTC 58.490 38.462 0.00 0.00 36.73 2.59
81 82 7.451731 TGATAACCCTGAGGAATTTGATAGT 57.548 36.000 0.00 0.00 36.73 2.12
82 83 8.159447 TCATGATAACCCTGAGGAATTTGATAG 58.841 37.037 0.00 0.00 36.73 2.08
83 84 8.044574 TCATGATAACCCTGAGGAATTTGATA 57.955 34.615 0.00 0.00 36.73 2.15
84 85 6.914665 TCATGATAACCCTGAGGAATTTGAT 58.085 36.000 0.00 0.00 36.73 2.57
85 86 6.325993 TCATGATAACCCTGAGGAATTTGA 57.674 37.500 0.00 0.00 36.73 2.69
86 87 6.208204 GGATCATGATAACCCTGAGGAATTTG 59.792 42.308 8.54 0.00 36.73 2.32
87 88 6.103797 AGGATCATGATAACCCTGAGGAATTT 59.896 38.462 8.54 0.00 36.73 1.82
88 89 5.614402 AGGATCATGATAACCCTGAGGAATT 59.386 40.000 8.54 0.00 36.73 2.17
89 90 5.168679 AGGATCATGATAACCCTGAGGAAT 58.831 41.667 8.54 0.00 36.73 3.01
90 91 4.570926 AGGATCATGATAACCCTGAGGAA 58.429 43.478 8.54 0.00 36.73 3.36
91 92 4.163427 GAGGATCATGATAACCCTGAGGA 58.837 47.826 16.96 0.00 33.27 3.71
92 93 3.906218 TGAGGATCATGATAACCCTGAGG 59.094 47.826 16.96 0.00 42.56 3.86
100 101 7.420563 ATTGCCTACAAGTGAGGATCATGATAA 60.421 37.037 8.54 0.00 42.58 1.75
101 102 6.043590 ATTGCCTACAAGTGAGGATCATGATA 59.956 38.462 8.54 0.00 42.58 2.15
102 103 5.163120 ATTGCCTACAAGTGAGGATCATGAT 60.163 40.000 8.25 8.25 42.58 2.45
103 104 4.164796 ATTGCCTACAAGTGAGGATCATGA 59.835 41.667 0.00 0.00 42.58 3.07
104 105 4.458397 ATTGCCTACAAGTGAGGATCATG 58.542 43.478 0.00 0.00 42.58 3.07
105 106 4.445448 GGATTGCCTACAAGTGAGGATCAT 60.445 45.833 0.00 0.00 42.58 2.45
106 107 3.118261 GGATTGCCTACAAGTGAGGATCA 60.118 47.826 0.00 0.00 40.86 2.92
107 108 3.118261 TGGATTGCCTACAAGTGAGGATC 60.118 47.826 0.00 0.00 39.69 3.36
108 109 2.846206 TGGATTGCCTACAAGTGAGGAT 59.154 45.455 0.00 0.00 39.69 3.24
109 110 2.027192 GTGGATTGCCTACAAGTGAGGA 60.027 50.000 0.00 0.00 39.69 3.71
110 111 2.290260 TGTGGATTGCCTACAAGTGAGG 60.290 50.000 0.00 0.00 39.69 3.86
111 112 2.744202 GTGTGGATTGCCTACAAGTGAG 59.256 50.000 0.00 0.00 39.69 3.51
112 113 2.371841 AGTGTGGATTGCCTACAAGTGA 59.628 45.455 0.00 0.00 39.69 3.41
113 114 2.485426 CAGTGTGGATTGCCTACAAGTG 59.515 50.000 0.00 0.00 39.69 3.16
114 115 2.553028 CCAGTGTGGATTGCCTACAAGT 60.553 50.000 0.00 0.00 40.96 3.16
115 116 2.086869 CCAGTGTGGATTGCCTACAAG 58.913 52.381 0.00 0.00 40.96 3.16
116 117 1.886222 GCCAGTGTGGATTGCCTACAA 60.886 52.381 0.00 0.00 40.96 2.41
117 118 0.322456 GCCAGTGTGGATTGCCTACA 60.322 55.000 0.00 0.00 40.96 2.74
118 119 1.369091 CGCCAGTGTGGATTGCCTAC 61.369 60.000 0.00 0.00 40.96 3.18
119 120 1.078497 CGCCAGTGTGGATTGCCTA 60.078 57.895 0.00 0.00 40.96 3.93
120 121 2.360350 CGCCAGTGTGGATTGCCT 60.360 61.111 0.00 0.00 40.96 4.75
121 122 1.315257 ATTCGCCAGTGTGGATTGCC 61.315 55.000 0.00 0.00 40.96 4.52
122 123 0.527565 AATTCGCCAGTGTGGATTGC 59.472 50.000 0.00 0.00 40.96 3.56
123 124 1.133025 GGAATTCGCCAGTGTGGATTG 59.867 52.381 0.00 0.00 40.96 2.67
124 125 1.004745 AGGAATTCGCCAGTGTGGATT 59.995 47.619 0.00 0.00 40.96 3.01
125 126 0.620556 AGGAATTCGCCAGTGTGGAT 59.379 50.000 0.00 0.00 40.96 3.41
126 127 1.271856 TAGGAATTCGCCAGTGTGGA 58.728 50.000 0.00 0.00 40.96 4.02
127 128 1.737793 GTTAGGAATTCGCCAGTGTGG 59.262 52.381 0.00 0.00 41.55 4.17
128 129 2.673368 GAGTTAGGAATTCGCCAGTGTG 59.327 50.000 0.00 0.00 0.00 3.82
129 130 2.354805 GGAGTTAGGAATTCGCCAGTGT 60.355 50.000 0.00 0.00 0.00 3.55
130 131 2.280628 GGAGTTAGGAATTCGCCAGTG 58.719 52.381 0.00 0.00 0.00 3.66
131 132 1.209747 GGGAGTTAGGAATTCGCCAGT 59.790 52.381 0.00 0.00 0.00 4.00
132 133 1.475213 GGGGAGTTAGGAATTCGCCAG 60.475 57.143 11.40 0.00 45.65 4.85
133 134 0.544697 GGGGAGTTAGGAATTCGCCA 59.455 55.000 11.40 0.00 45.65 5.69
134 135 0.544697 TGGGGAGTTAGGAATTCGCC 59.455 55.000 9.89 9.89 46.25 5.54
135 136 1.209747 ACTGGGGAGTTAGGAATTCGC 59.790 52.381 0.00 0.00 0.00 4.70
136 137 2.500098 TGACTGGGGAGTTAGGAATTCG 59.500 50.000 0.00 0.00 0.00 3.34
137 138 3.775316 TCTGACTGGGGAGTTAGGAATTC 59.225 47.826 0.00 0.00 0.00 2.17
138 139 3.803340 TCTGACTGGGGAGTTAGGAATT 58.197 45.455 0.00 0.00 0.00 2.17
139 140 3.491766 TCTGACTGGGGAGTTAGGAAT 57.508 47.619 0.00 0.00 0.00 3.01
140 141 2.904434 GTTCTGACTGGGGAGTTAGGAA 59.096 50.000 0.00 0.00 0.00 3.36
141 142 2.158219 TGTTCTGACTGGGGAGTTAGGA 60.158 50.000 0.00 0.00 0.00 2.94
142 143 2.257207 TGTTCTGACTGGGGAGTTAGG 58.743 52.381 0.00 0.00 0.00 2.69
143 144 4.351874 TTTGTTCTGACTGGGGAGTTAG 57.648 45.455 0.00 0.00 0.00 2.34
144 145 4.993705 ATTTGTTCTGACTGGGGAGTTA 57.006 40.909 0.00 0.00 0.00 2.24
145 146 3.884037 ATTTGTTCTGACTGGGGAGTT 57.116 42.857 0.00 0.00 0.00 3.01
146 147 3.498661 GGAATTTGTTCTGACTGGGGAGT 60.499 47.826 0.00 0.00 0.00 3.85
147 148 3.084786 GGAATTTGTTCTGACTGGGGAG 58.915 50.000 0.00 0.00 0.00 4.30
148 149 2.716424 AGGAATTTGTTCTGACTGGGGA 59.284 45.455 0.00 0.00 0.00 4.81
149 150 3.084786 GAGGAATTTGTTCTGACTGGGG 58.915 50.000 0.00 0.00 0.00 4.96
150 151 3.754965 TGAGGAATTTGTTCTGACTGGG 58.245 45.455 0.00 0.00 0.00 4.45
151 152 4.217118 CCTTGAGGAATTTGTTCTGACTGG 59.783 45.833 0.00 0.00 37.39 4.00
152 153 5.065914 TCCTTGAGGAATTTGTTCTGACTG 58.934 41.667 0.00 0.00 42.18 3.51
153 154 5.310409 TCCTTGAGGAATTTGTTCTGACT 57.690 39.130 0.00 0.00 42.18 3.41
177 178 1.299926 ACACGTTCAGCTCGGTGAC 60.300 57.895 9.25 0.00 0.00 3.67
178 179 1.299850 CACACGTTCAGCTCGGTGA 60.300 57.895 9.25 0.00 34.24 4.02
179 180 2.943345 GCACACGTTCAGCTCGGTG 61.943 63.158 9.18 9.18 34.88 4.94
180 181 2.661866 GCACACGTTCAGCTCGGT 60.662 61.111 0.00 0.00 0.00 4.69
181 182 2.661537 TGCACACGTTCAGCTCGG 60.662 61.111 5.40 0.00 0.00 4.63
182 183 1.761244 TTGTGCACACGTTCAGCTCG 61.761 55.000 21.56 0.00 0.00 5.03
183 184 0.316196 GTTGTGCACACGTTCAGCTC 60.316 55.000 21.56 0.00 0.00 4.09
184 185 0.744414 AGTTGTGCACACGTTCAGCT 60.744 50.000 21.56 0.49 0.00 4.24
185 186 0.316196 GAGTTGTGCACACGTTCAGC 60.316 55.000 21.56 0.00 0.00 4.26
186 187 0.043053 CGAGTTGTGCACACGTTCAG 60.043 55.000 21.56 5.43 35.01 3.02
187 188 1.425267 CCGAGTTGTGCACACGTTCA 61.425 55.000 21.56 0.39 37.75 3.18
188 189 1.149361 TCCGAGTTGTGCACACGTTC 61.149 55.000 21.56 15.73 37.75 3.95
189 190 1.151777 CTCCGAGTTGTGCACACGTT 61.152 55.000 21.56 7.92 37.75 3.99
190 191 1.591594 CTCCGAGTTGTGCACACGT 60.592 57.895 21.56 9.75 37.75 4.49
191 192 2.310233 CCTCCGAGTTGTGCACACG 61.310 63.158 21.56 19.67 39.03 4.49
192 193 1.227556 ACCTCCGAGTTGTGCACAC 60.228 57.895 21.56 14.79 0.00 3.82
193 194 1.227527 CACCTCCGAGTTGTGCACA 60.228 57.895 17.42 17.42 0.00 4.57
194 195 1.222115 GACACCTCCGAGTTGTGCAC 61.222 60.000 10.75 10.75 33.30 4.57
195 196 1.069090 GACACCTCCGAGTTGTGCA 59.931 57.895 2.90 0.00 33.30 4.57
196 197 2.022129 CGACACCTCCGAGTTGTGC 61.022 63.158 2.90 0.00 33.30 4.57
197 198 0.594602 TACGACACCTCCGAGTTGTG 59.405 55.000 2.90 3.48 34.37 3.33
198 199 0.595095 GTACGACACCTCCGAGTTGT 59.405 55.000 0.00 0.00 36.40 3.32
199 200 0.453950 CGTACGACACCTCCGAGTTG 60.454 60.000 10.44 0.00 0.00 3.16
200 201 0.886490 ACGTACGACACCTCCGAGTT 60.886 55.000 24.41 0.00 0.00 3.01
201 202 0.886490 AACGTACGACACCTCCGAGT 60.886 55.000 24.41 0.00 0.00 4.18
202 203 0.179205 GAACGTACGACACCTCCGAG 60.179 60.000 24.41 0.00 0.00 4.63
203 204 1.868997 GAACGTACGACACCTCCGA 59.131 57.895 24.41 0.00 0.00 4.55
204 205 1.510623 CGAACGTACGACACCTCCG 60.511 63.158 24.41 9.78 35.09 4.63
205 206 1.154150 CCGAACGTACGACACCTCC 60.154 63.158 24.41 1.65 35.09 4.30
206 207 0.796312 TACCGAACGTACGACACCTC 59.204 55.000 24.41 8.85 35.09 3.85
207 208 0.517316 GTACCGAACGTACGACACCT 59.483 55.000 24.41 3.55 38.17 4.00
208 209 3.001576 GTACCGAACGTACGACACC 57.998 57.895 24.41 6.58 38.17 4.16
214 215 2.159517 ACCGATCAAGTACCGAACGTAC 60.160 50.000 10.35 0.00 46.69 3.67
215 216 2.083774 ACCGATCAAGTACCGAACGTA 58.916 47.619 10.35 0.00 0.00 3.57
216 217 0.883833 ACCGATCAAGTACCGAACGT 59.116 50.000 10.35 0.00 0.00 3.99
217 218 1.542544 GACCGATCAAGTACCGAACG 58.457 55.000 5.81 5.81 0.00 3.95
218 219 1.542544 CGACCGATCAAGTACCGAAC 58.457 55.000 0.00 0.00 0.00 3.95
219 220 0.452987 CCGACCGATCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
220 221 0.392863 TCCGACCGATCAAGTACCGA 60.393 55.000 0.00 0.00 0.00 4.69
221 222 0.029035 CTCCGACCGATCAAGTACCG 59.971 60.000 0.00 0.00 0.00 4.02
222 223 0.248949 GCTCCGACCGATCAAGTACC 60.249 60.000 0.00 0.00 0.00 3.34
223 224 0.739561 AGCTCCGACCGATCAAGTAC 59.260 55.000 0.00 0.00 0.00 2.73
224 225 2.158856 TCTAGCTCCGACCGATCAAGTA 60.159 50.000 0.00 0.00 0.00 2.24
225 226 1.025812 CTAGCTCCGACCGATCAAGT 58.974 55.000 0.00 0.00 0.00 3.16
226 227 1.309950 TCTAGCTCCGACCGATCAAG 58.690 55.000 0.00 0.00 0.00 3.02
227 228 1.676529 CTTCTAGCTCCGACCGATCAA 59.323 52.381 0.00 0.00 0.00 2.57
228 229 1.134189 TCTTCTAGCTCCGACCGATCA 60.134 52.381 0.00 0.00 0.00 2.92
229 230 1.595466 TCTTCTAGCTCCGACCGATC 58.405 55.000 0.00 0.00 0.00 3.69
230 231 1.950909 CTTCTTCTAGCTCCGACCGAT 59.049 52.381 0.00 0.00 0.00 4.18
231 232 1.339824 ACTTCTTCTAGCTCCGACCGA 60.340 52.381 0.00 0.00 0.00 4.69
232 233 1.096416 ACTTCTTCTAGCTCCGACCG 58.904 55.000 0.00 0.00 0.00 4.79
233 234 2.478200 CGAACTTCTTCTAGCTCCGACC 60.478 54.545 0.00 0.00 0.00 4.79
234 235 2.419324 TCGAACTTCTTCTAGCTCCGAC 59.581 50.000 0.00 0.00 0.00 4.79
235 236 2.419324 GTCGAACTTCTTCTAGCTCCGA 59.581 50.000 0.00 0.00 0.00 4.55
236 237 2.420722 AGTCGAACTTCTTCTAGCTCCG 59.579 50.000 0.00 0.00 0.00 4.63
237 238 4.395542 TGTAGTCGAACTTCTTCTAGCTCC 59.604 45.833 0.00 0.00 0.00 4.70
238 239 5.548706 TGTAGTCGAACTTCTTCTAGCTC 57.451 43.478 0.00 0.00 0.00 4.09
239 240 5.648526 TGATGTAGTCGAACTTCTTCTAGCT 59.351 40.000 0.00 0.00 0.00 3.32
240 241 5.881447 TGATGTAGTCGAACTTCTTCTAGC 58.119 41.667 0.00 0.00 0.00 3.42
241 242 6.748198 GGTTGATGTAGTCGAACTTCTTCTAG 59.252 42.308 0.00 0.00 0.00 2.43
242 243 6.618811 GGTTGATGTAGTCGAACTTCTTCTA 58.381 40.000 0.00 0.00 0.00 2.10
243 244 5.471257 GGTTGATGTAGTCGAACTTCTTCT 58.529 41.667 0.00 0.00 0.00 2.85
244 245 4.323868 CGGTTGATGTAGTCGAACTTCTTC 59.676 45.833 0.00 0.00 0.00 2.87
245 246 4.235360 CGGTTGATGTAGTCGAACTTCTT 58.765 43.478 0.00 0.00 0.00 2.52
246 247 3.834610 CGGTTGATGTAGTCGAACTTCT 58.165 45.455 0.00 0.00 0.00 2.85
247 248 2.344741 GCGGTTGATGTAGTCGAACTTC 59.655 50.000 0.00 0.00 0.00 3.01
248 249 2.334838 GCGGTTGATGTAGTCGAACTT 58.665 47.619 0.00 0.00 0.00 2.66
249 250 1.731424 CGCGGTTGATGTAGTCGAACT 60.731 52.381 0.00 0.00 0.00 3.01
250 251 0.638746 CGCGGTTGATGTAGTCGAAC 59.361 55.000 0.00 0.00 0.00 3.95
251 252 0.241749 ACGCGGTTGATGTAGTCGAA 59.758 50.000 12.47 0.00 0.00 3.71
252 253 0.241749 AACGCGGTTGATGTAGTCGA 59.758 50.000 12.47 0.00 0.00 4.20
253 254 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
254 255 1.389106 GACAACGCGGTTGATGTAGTC 59.611 52.381 22.26 10.01 45.28 2.59
255 256 1.269883 TGACAACGCGGTTGATGTAGT 60.270 47.619 22.26 4.69 45.28 2.73
256 257 1.424403 TGACAACGCGGTTGATGTAG 58.576 50.000 22.26 1.41 45.28 2.74
257 258 1.867166 TTGACAACGCGGTTGATGTA 58.133 45.000 22.26 7.55 45.28 2.29
258 259 1.018148 TTTGACAACGCGGTTGATGT 58.982 45.000 22.26 13.84 45.28 3.06
259 260 1.394697 GTTTGACAACGCGGTTGATG 58.605 50.000 22.26 11.18 45.28 3.07
260 261 3.837669 GTTTGACAACGCGGTTGAT 57.162 47.368 22.26 10.59 45.28 2.57
284 285 1.354506 CCCTCGTAGACCGTAAGCG 59.645 63.158 0.00 0.00 37.94 4.68
285 286 1.332065 GTACCCTCGTAGACCGTAAGC 59.668 57.143 0.00 0.00 37.94 3.09
286 287 2.632377 TGTACCCTCGTAGACCGTAAG 58.368 52.381 0.00 0.00 37.94 2.34
287 288 2.779755 TGTACCCTCGTAGACCGTAA 57.220 50.000 0.00 0.00 37.94 3.18
288 289 3.641436 TCTATGTACCCTCGTAGACCGTA 59.359 47.826 0.00 0.00 37.94 4.02
289 290 2.435805 TCTATGTACCCTCGTAGACCGT 59.564 50.000 0.00 0.00 37.94 4.83
290 291 2.805099 GTCTATGTACCCTCGTAGACCG 59.195 54.545 12.36 0.00 44.54 4.79
293 294 4.080695 AGTGTGTCTATGTACCCTCGTAGA 60.081 45.833 0.00 0.00 34.71 2.59
294 295 4.197750 AGTGTGTCTATGTACCCTCGTAG 58.802 47.826 0.00 0.00 0.00 3.51
295 296 4.080695 AGAGTGTGTCTATGTACCCTCGTA 60.081 45.833 0.00 0.00 31.71 3.43
296 297 3.015327 GAGTGTGTCTATGTACCCTCGT 58.985 50.000 0.00 0.00 0.00 4.18
297 298 3.280295 AGAGTGTGTCTATGTACCCTCG 58.720 50.000 0.00 0.00 31.71 4.63
298 299 3.633065 GGAGAGTGTGTCTATGTACCCTC 59.367 52.174 0.00 0.00 34.71 4.30
299 300 3.627747 GGGAGAGTGTGTCTATGTACCCT 60.628 52.174 0.00 0.00 34.71 4.34
300 301 2.694109 GGGAGAGTGTGTCTATGTACCC 59.306 54.545 0.00 0.00 34.71 3.69
301 302 2.694109 GGGGAGAGTGTGTCTATGTACC 59.306 54.545 0.00 0.00 34.71 3.34
302 303 2.694109 GGGGGAGAGTGTGTCTATGTAC 59.306 54.545 0.00 0.00 34.71 2.90
303 304 2.585900 AGGGGGAGAGTGTGTCTATGTA 59.414 50.000 0.00 0.00 34.71 2.29
304 305 1.362932 AGGGGGAGAGTGTGTCTATGT 59.637 52.381 0.00 0.00 34.71 2.29
305 306 2.035632 GAGGGGGAGAGTGTGTCTATG 58.964 57.143 0.00 0.00 34.71 2.23
306 307 1.410365 CGAGGGGGAGAGTGTGTCTAT 60.410 57.143 0.00 0.00 34.71 1.98
307 308 0.034380 CGAGGGGGAGAGTGTGTCTA 60.034 60.000 0.00 0.00 34.71 2.59
308 309 1.304547 CGAGGGGGAGAGTGTGTCT 60.305 63.158 0.00 0.00 38.71 3.41
309 310 1.186267 AACGAGGGGGAGAGTGTGTC 61.186 60.000 0.00 0.00 0.00 3.67
310 311 1.152312 AACGAGGGGGAGAGTGTGT 60.152 57.895 0.00 0.00 0.00 3.72
311 312 1.293498 CAACGAGGGGGAGAGTGTG 59.707 63.158 0.00 0.00 0.00 3.82
312 313 2.584391 GCAACGAGGGGGAGAGTGT 61.584 63.158 0.00 0.00 0.00 3.55
313 314 0.970937 TAGCAACGAGGGGGAGAGTG 60.971 60.000 0.00 0.00 0.00 3.51
314 315 0.032017 ATAGCAACGAGGGGGAGAGT 60.032 55.000 0.00 0.00 0.00 3.24
315 316 0.390860 CATAGCAACGAGGGGGAGAG 59.609 60.000 0.00 0.00 0.00 3.20
316 317 1.686325 GCATAGCAACGAGGGGGAGA 61.686 60.000 0.00 0.00 0.00 3.71
317 318 1.227674 GCATAGCAACGAGGGGGAG 60.228 63.158 0.00 0.00 0.00 4.30
318 319 1.344953 ATGCATAGCAACGAGGGGGA 61.345 55.000 0.00 0.00 43.62 4.81
319 320 0.886490 GATGCATAGCAACGAGGGGG 60.886 60.000 0.00 0.00 43.62 5.40
320 321 0.107456 AGATGCATAGCAACGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
321 322 1.506493 GAGATGCATAGCAACGAGGG 58.494 55.000 0.00 0.00 43.62 4.30
322 323 1.202568 TGGAGATGCATAGCAACGAGG 60.203 52.381 0.00 0.00 43.62 4.63
323 324 2.229675 TGGAGATGCATAGCAACGAG 57.770 50.000 0.00 0.00 43.62 4.18
324 325 2.486918 CATGGAGATGCATAGCAACGA 58.513 47.619 0.00 0.00 43.62 3.85
325 326 1.534163 CCATGGAGATGCATAGCAACG 59.466 52.381 5.56 0.00 43.62 4.10
326 327 2.854963 TCCATGGAGATGCATAGCAAC 58.145 47.619 11.44 0.00 43.62 4.17
327 328 3.801307 ATCCATGGAGATGCATAGCAA 57.199 42.857 21.33 0.00 43.62 3.91
328 329 4.098894 TCTATCCATGGAGATGCATAGCA 58.901 43.478 21.33 3.76 44.86 3.49
329 330 4.750021 TCTATCCATGGAGATGCATAGC 57.250 45.455 21.33 0.00 32.28 2.97
330 331 6.481434 TGATCTATCCATGGAGATGCATAG 57.519 41.667 21.33 15.06 33.17 2.23
331 332 7.280356 CAATGATCTATCCATGGAGATGCATA 58.720 38.462 21.33 5.46 32.47 3.14
332 333 5.977821 ATGATCTATCCATGGAGATGCAT 57.022 39.130 21.33 17.48 32.47 3.96
333 334 5.497474 CAATGATCTATCCATGGAGATGCA 58.503 41.667 21.33 16.27 32.47 3.96
334 335 4.335874 GCAATGATCTATCCATGGAGATGC 59.664 45.833 21.33 16.63 32.47 3.91
335 336 4.571176 CGCAATGATCTATCCATGGAGATG 59.429 45.833 21.33 10.61 32.47 2.90
336 337 4.224594 ACGCAATGATCTATCCATGGAGAT 59.775 41.667 21.33 17.64 35.07 2.75
337 338 3.580022 ACGCAATGATCTATCCATGGAGA 59.420 43.478 21.33 15.39 0.00 3.71
338 339 3.683340 CACGCAATGATCTATCCATGGAG 59.317 47.826 21.33 7.68 0.00 3.86
339 340 3.071457 ACACGCAATGATCTATCCATGGA 59.929 43.478 18.88 18.88 0.00 3.41
340 341 3.187842 CACACGCAATGATCTATCCATGG 59.812 47.826 4.97 4.97 0.00 3.66
341 342 3.364664 GCACACGCAATGATCTATCCATG 60.365 47.826 0.00 0.00 38.36 3.66
342 343 2.810274 GCACACGCAATGATCTATCCAT 59.190 45.455 0.00 0.00 38.36 3.41
343 344 2.212652 GCACACGCAATGATCTATCCA 58.787 47.619 0.00 0.00 38.36 3.41
344 345 1.193203 CGCACACGCAATGATCTATCC 59.807 52.381 0.00 0.00 38.40 2.59
345 346 1.860950 ACGCACACGCAATGATCTATC 59.139 47.619 0.00 0.00 45.53 2.08
346 347 1.939974 ACGCACACGCAATGATCTAT 58.060 45.000 0.00 0.00 45.53 1.98
347 348 2.098443 TCTACGCACACGCAATGATCTA 59.902 45.455 0.00 0.00 45.53 1.98
348 349 1.135112 TCTACGCACACGCAATGATCT 60.135 47.619 0.00 0.00 45.53 2.75
349 350 1.277326 TCTACGCACACGCAATGATC 58.723 50.000 0.00 0.00 45.53 2.92
350 351 1.720805 TTCTACGCACACGCAATGAT 58.279 45.000 0.00 0.00 45.53 2.45
351 352 1.720805 ATTCTACGCACACGCAATGA 58.279 45.000 0.00 0.00 45.53 2.57
352 353 2.525750 AATTCTACGCACACGCAATG 57.474 45.000 0.00 0.00 45.53 2.82
353 354 3.552604 AAAATTCTACGCACACGCAAT 57.447 38.095 0.00 0.00 45.53 3.56
354 355 3.341857 AAAAATTCTACGCACACGCAA 57.658 38.095 0.00 0.00 45.53 4.85
372 373 5.390991 GGAAACGTTGCATGGAAAACAAAAA 60.391 36.000 8.91 0.00 0.00 1.94
373 374 4.093556 GGAAACGTTGCATGGAAAACAAAA 59.906 37.500 8.91 0.00 0.00 2.44
374 375 3.619038 GGAAACGTTGCATGGAAAACAAA 59.381 39.130 8.91 0.00 0.00 2.83
375 376 3.190874 GGAAACGTTGCATGGAAAACAA 58.809 40.909 8.91 0.00 0.00 2.83
376 377 2.482142 GGGAAACGTTGCATGGAAAACA 60.482 45.455 8.91 0.00 0.00 2.83
377 378 2.131972 GGGAAACGTTGCATGGAAAAC 58.868 47.619 8.91 0.00 0.00 2.43
378 379 1.757118 TGGGAAACGTTGCATGGAAAA 59.243 42.857 8.91 0.00 0.00 2.29
379 380 1.403814 TGGGAAACGTTGCATGGAAA 58.596 45.000 8.91 0.00 0.00 3.13
380 381 1.067821 GTTGGGAAACGTTGCATGGAA 59.932 47.619 8.91 0.00 0.00 3.53
381 382 0.671251 GTTGGGAAACGTTGCATGGA 59.329 50.000 8.91 0.00 0.00 3.41
382 383 0.387202 TGTTGGGAAACGTTGCATGG 59.613 50.000 8.91 0.00 0.00 3.66
383 384 2.215907 TTGTTGGGAAACGTTGCATG 57.784 45.000 8.91 0.00 0.00 4.06
384 385 2.482839 CCTTTGTTGGGAAACGTTGCAT 60.483 45.455 8.91 0.00 0.00 3.96
385 386 1.134965 CCTTTGTTGGGAAACGTTGCA 60.135 47.619 8.91 0.00 0.00 4.08
386 387 1.134936 ACCTTTGTTGGGAAACGTTGC 60.135 47.619 0.00 0.00 0.00 4.17
387 388 2.951457 ACCTTTGTTGGGAAACGTTG 57.049 45.000 0.00 0.00 0.00 4.10
388 389 4.018490 AGTTACCTTTGTTGGGAAACGTT 58.982 39.130 0.00 0.00 34.42 3.99
389 390 3.623703 AGTTACCTTTGTTGGGAAACGT 58.376 40.909 0.00 0.00 34.42 3.99
390 391 4.337274 AGAAGTTACCTTTGTTGGGAAACG 59.663 41.667 0.00 0.00 34.42 3.60
391 392 5.505159 CGAGAAGTTACCTTTGTTGGGAAAC 60.505 44.000 0.00 0.00 30.61 2.78
392 393 4.577283 CGAGAAGTTACCTTTGTTGGGAAA 59.423 41.667 0.00 0.00 30.61 3.13
393 394 4.131596 CGAGAAGTTACCTTTGTTGGGAA 58.868 43.478 0.00 0.00 0.00 3.97
394 395 3.495453 CCGAGAAGTTACCTTTGTTGGGA 60.495 47.826 0.00 0.00 0.00 4.37
395 396 2.812011 CCGAGAAGTTACCTTTGTTGGG 59.188 50.000 0.00 0.00 0.00 4.12
396 397 2.225727 GCCGAGAAGTTACCTTTGTTGG 59.774 50.000 0.00 0.00 0.00 3.77
397 398 2.875933 TGCCGAGAAGTTACCTTTGTTG 59.124 45.455 0.00 0.00 0.00 3.33
398 399 3.139077 CTGCCGAGAAGTTACCTTTGTT 58.861 45.455 0.00 0.00 0.00 2.83
399 400 2.767505 CTGCCGAGAAGTTACCTTTGT 58.232 47.619 0.00 0.00 0.00 2.83
400 401 1.464997 GCTGCCGAGAAGTTACCTTTG 59.535 52.381 0.00 0.00 0.00 2.77
401 402 1.610886 GGCTGCCGAGAAGTTACCTTT 60.611 52.381 1.35 0.00 0.00 3.11
561 572 3.119029 TGTTTATACCCCTGACTACGCAC 60.119 47.826 0.00 0.00 0.00 5.34
633 644 1.937223 CCTAGACAAACGTTGTGCACA 59.063 47.619 17.42 17.42 45.52 4.57
682 693 1.369091 GCAGTTACCACTCGCCATGG 61.369 60.000 7.63 7.63 43.43 3.66
692 703 0.688487 GTAGTGGGTGGCAGTTACCA 59.312 55.000 0.00 0.00 40.03 3.25
771 782 0.944386 CCCACTTGTGTCTTGTTCCG 59.056 55.000 0.00 0.00 0.00 4.30
777 788 1.342672 ACGGTCCCCACTTGTGTCTT 61.343 55.000 0.00 0.00 0.00 3.01
781 792 2.978010 GCACGGTCCCCACTTGTG 60.978 66.667 0.00 0.00 34.13 3.33
782 793 4.619227 CGCACGGTCCCCACTTGT 62.619 66.667 0.00 0.00 0.00 3.16
837 848 1.031939 TATGGGGAAGAAGAGGGGGA 58.968 55.000 0.00 0.00 0.00 4.81
843 854 7.039722 ACATTACCTTTTATGGGGAAGAAGA 57.960 36.000 0.00 0.00 29.21 2.87
878 890 1.887797 TGGGGATAGGTGAATTCGGT 58.112 50.000 0.04 0.00 0.00 4.69
880 892 3.821033 GGAATTGGGGATAGGTGAATTCG 59.179 47.826 0.04 0.00 35.00 3.34
1044 1056 2.047179 GACTTCTCCGGCGCCTTT 60.047 61.111 26.68 0.00 0.00 3.11
1113 1125 4.238385 TCGGAGACTTTCAACGCG 57.762 55.556 3.53 3.53 0.00 6.01
1136 1148 3.846430 GGAAGGAGTACCGGGCCG 61.846 72.222 21.46 21.46 41.83 6.13
1143 1155 2.028930 CACTGACCACTGGAAGGAGTAC 60.029 54.545 0.71 0.00 39.30 2.73
1149 1161 2.760374 GTCTTCACTGACCACTGGAAG 58.240 52.381 0.71 1.60 42.29 3.46
1214 1226 2.871427 GCGAACTTATCTGCGCCCG 61.871 63.158 4.18 0.00 43.33 6.13
1215 1227 3.014856 GCGAACTTATCTGCGCCC 58.985 61.111 4.18 0.00 43.33 6.13
1247 1259 4.415596 AGGGAGCAATCCACAATAAACAA 58.584 39.130 0.00 0.00 0.00 2.83
1249 1261 3.381590 GGAGGGAGCAATCCACAATAAAC 59.618 47.826 0.00 0.00 35.54 2.01
1281 1293 2.947652 CCGCATCACCTCATCAAAGAAT 59.052 45.455 0.00 0.00 0.00 2.40
1300 1312 1.029947 CCCAGAAAATTCCGGGTCCG 61.030 60.000 0.00 1.86 39.59 4.79
1307 1319 1.266178 CACCACCCCCAGAAAATTCC 58.734 55.000 0.00 0.00 0.00 3.01
1324 1336 3.357079 CAGAGGCACGTTGGGCAC 61.357 66.667 2.28 0.00 35.46 5.01
1325 1337 3.414136 AACAGAGGCACGTTGGGCA 62.414 57.895 2.28 0.00 35.46 5.36
1327 1339 1.966451 GGAACAGAGGCACGTTGGG 60.966 63.158 0.00 0.00 0.00 4.12
1329 1341 2.954753 GCGGAACAGAGGCACGTTG 61.955 63.158 0.00 0.00 0.00 4.10
1362 1411 0.313672 TGGCGTCACCTTCAATTTGC 59.686 50.000 0.00 0.00 40.22 3.68
1363 1412 2.489329 AGATGGCGTCACCTTCAATTTG 59.511 45.455 9.78 0.00 43.58 2.32
1365 1414 2.359900 GAGATGGCGTCACCTTCAATT 58.640 47.619 9.78 0.00 43.58 2.32
1386 1435 0.385751 AGATCCATGTCACGCTACCG 59.614 55.000 0.00 0.00 41.14 4.02
1393 1442 2.240500 GCGCGGAGATCCATGTCAC 61.241 63.158 8.83 0.00 35.14 3.67
1441 1490 1.586154 CCGGCGCCAAAGAAAGTCAT 61.586 55.000 28.98 0.00 0.00 3.06
1457 1506 1.956477 CTTTTCAATGGGGCTATCCGG 59.044 52.381 0.00 0.00 36.01 5.14
1547 1596 7.936584 TGAATCAAAGGACAAACGTAAGAAAT 58.063 30.769 0.00 0.00 43.62 2.17
1552 1601 8.786826 ATCTATGAATCAAAGGACAAACGTAA 57.213 30.769 0.00 0.00 0.00 3.18
1629 1679 5.892348 AGGTTGGAGTGGATGTTAGATTTT 58.108 37.500 0.00 0.00 0.00 1.82
1647 1697 6.980397 AGCAAAGAAATTGTAAACAGAGGTTG 59.020 34.615 0.00 0.00 41.32 3.77
1651 1701 9.305925 AGAAAAGCAAAGAAATTGTAAACAGAG 57.694 29.630 0.00 0.00 41.32 3.35
1653 1703 8.261908 CGAGAAAAGCAAAGAAATTGTAAACAG 58.738 33.333 0.00 0.00 41.32 3.16
1655 1705 8.050170 CACGAGAAAAGCAAAGAAATTGTAAAC 58.950 33.333 0.00 0.00 41.32 2.01
1665 1715 5.749596 TGATTTCACGAGAAAAGCAAAGA 57.250 34.783 12.02 0.00 46.06 2.52
1669 1719 5.034152 GTGTTTGATTTCACGAGAAAAGCA 58.966 37.500 12.02 10.35 46.06 3.91
1670 1720 5.273944 AGTGTTTGATTTCACGAGAAAAGC 58.726 37.500 12.02 8.07 46.06 3.51
1671 1721 5.909610 GGAGTGTTTGATTTCACGAGAAAAG 59.090 40.000 12.02 0.00 46.06 2.27
1675 1725 4.336889 AGGAGTGTTTGATTTCACGAGA 57.663 40.909 0.00 0.00 39.25 4.04
1677 1727 3.003275 GCAAGGAGTGTTTGATTTCACGA 59.997 43.478 0.00 0.00 39.25 4.35
1710 1760 3.825328 AGTATCATGCCCACTTGAATCC 58.175 45.455 0.00 0.00 34.04 3.01
1753 1804 6.567687 TCGCAGAATTTTGAAAACATAGGA 57.432 33.333 0.00 0.00 0.00 2.94
1754 1805 7.541783 TGATTCGCAGAATTTTGAAAACATAGG 59.458 33.333 0.00 0.00 45.90 2.57
1757 1808 7.712264 TTGATTCGCAGAATTTTGAAAACAT 57.288 28.000 0.00 0.00 45.90 2.71
1758 1809 7.531280 TTTGATTCGCAGAATTTTGAAAACA 57.469 28.000 0.00 0.00 45.90 2.83
1770 1821 0.887933 GGGCCTTTTTGATTCGCAGA 59.112 50.000 0.84 0.00 0.00 4.26
1783 1834 0.701147 CTCCTCCTTTTCAGGGCCTT 59.299 55.000 1.32 0.00 41.25 4.35
1813 1864 9.836864 ACAAAGGAATAGAAAAAGCAGAATTTT 57.163 25.926 0.00 0.00 33.86 1.82
1814 1865 9.836864 AACAAAGGAATAGAAAAAGCAGAATTT 57.163 25.926 0.00 0.00 0.00 1.82
1819 1870 9.912634 TGATTAACAAAGGAATAGAAAAAGCAG 57.087 29.630 0.00 0.00 0.00 4.24
1830 1881 9.995003 TGTAAAGCAAATGATTAACAAAGGAAT 57.005 25.926 0.00 0.00 0.00 3.01
1831 1882 9.823647 TTGTAAAGCAAATGATTAACAAAGGAA 57.176 25.926 0.00 0.00 33.53 3.36
1832 1883 9.474920 CTTGTAAAGCAAATGATTAACAAAGGA 57.525 29.630 0.00 0.00 36.98 3.36
1833 1884 8.711457 CCTTGTAAAGCAAATGATTAACAAAGG 58.289 33.333 0.00 0.00 44.44 3.11
1834 1885 9.474920 TCCTTGTAAAGCAAATGATTAACAAAG 57.525 29.630 0.00 0.00 44.44 2.77
1835 1886 9.255304 GTCCTTGTAAAGCAAATGATTAACAAA 57.745 29.630 0.00 0.00 44.44 2.83
1836 1887 7.593273 CGTCCTTGTAAAGCAAATGATTAACAA 59.407 33.333 0.00 0.00 44.44 2.83
1837 1888 7.081349 CGTCCTTGTAAAGCAAATGATTAACA 58.919 34.615 0.00 0.00 44.44 2.41
1838 1889 6.033513 GCGTCCTTGTAAAGCAAATGATTAAC 59.966 38.462 0.00 0.00 44.44 2.01
1839 1890 6.072175 AGCGTCCTTGTAAAGCAAATGATTAA 60.072 34.615 0.00 0.00 44.44 1.40
1840 1891 5.414454 AGCGTCCTTGTAAAGCAAATGATTA 59.586 36.000 0.00 0.00 44.44 1.75
1841 1892 4.218417 AGCGTCCTTGTAAAGCAAATGATT 59.782 37.500 0.00 0.00 44.44 2.57
1842 1893 3.758554 AGCGTCCTTGTAAAGCAAATGAT 59.241 39.130 0.00 0.00 44.44 2.45
1843 1894 3.058293 CAGCGTCCTTGTAAAGCAAATGA 60.058 43.478 0.00 0.00 44.44 2.57
1844 1895 3.236816 CAGCGTCCTTGTAAAGCAAATG 58.763 45.455 0.00 0.00 44.44 2.32
1845 1896 2.351738 GCAGCGTCCTTGTAAAGCAAAT 60.352 45.455 0.00 0.00 44.44 2.32
1846 1897 1.001815 GCAGCGTCCTTGTAAAGCAAA 60.002 47.619 0.00 0.00 44.44 3.68
1847 1898 0.591170 GCAGCGTCCTTGTAAAGCAA 59.409 50.000 0.00 0.00 44.44 3.91
1848 1899 1.234615 GGCAGCGTCCTTGTAAAGCA 61.235 55.000 0.00 0.00 44.44 3.91
1849 1900 1.502190 GGCAGCGTCCTTGTAAAGC 59.498 57.895 0.00 0.00 44.44 3.51
1850 1901 0.669318 TCGGCAGCGTCCTTGTAAAG 60.669 55.000 0.00 0.00 45.69 1.85
1851 1902 0.947180 GTCGGCAGCGTCCTTGTAAA 60.947 55.000 0.00 0.00 0.00 2.01
1852 1903 1.373748 GTCGGCAGCGTCCTTGTAA 60.374 57.895 0.00 0.00 0.00 2.41
1853 1904 2.260434 GTCGGCAGCGTCCTTGTA 59.740 61.111 0.00 0.00 0.00 2.41
1854 1905 3.923864 TGTCGGCAGCGTCCTTGT 61.924 61.111 0.00 0.00 0.00 3.16
1855 1906 3.414700 GTGTCGGCAGCGTCCTTG 61.415 66.667 0.00 0.00 0.00 3.61
1858 1909 4.796231 ATCGTGTCGGCAGCGTCC 62.796 66.667 10.80 0.00 0.00 4.79
1859 1910 3.545481 CATCGTGTCGGCAGCGTC 61.545 66.667 10.80 0.00 0.00 5.19
1863 1914 4.794439 TCCGCATCGTGTCGGCAG 62.794 66.667 0.00 0.00 44.91 4.85
1864 1915 4.141965 ATCCGCATCGTGTCGGCA 62.142 61.111 0.00 0.00 44.91 5.69
2276 2329 1.270147 GCTGTGTACAGGTCCGAAACT 60.270 52.381 13.41 0.00 43.94 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.