Multiple sequence alignment - TraesCS7D01G302700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G302700 chr7D 100.000 2591 0 0 1 2591 382756358 382753768 0.000000e+00 4785
1 TraesCS7D01G302700 chr7A 93.405 1577 65 19 356 1905 430815288 430813724 0.000000e+00 2300
2 TraesCS7D01G302700 chr7A 90.123 162 8 2 1874 2028 430813722 430813562 1.220000e-48 204
3 TraesCS7D01G302700 chr7B 94.375 1120 31 6 752 1848 377136137 377135027 0.000000e+00 1690
4 TraesCS7D01G302700 chr7B 91.821 758 33 21 1 751 377137118 377136383 0.000000e+00 1029
5 TraesCS7D01G302700 chr7B 92.109 659 48 4 1890 2545 377135023 377134366 0.000000e+00 926
6 TraesCS7D01G302700 chr2A 83.071 508 81 5 1068 1574 57176228 57175725 8.450000e-125 457
7 TraesCS7D01G302700 chr2D 82.874 508 82 5 1068 1574 55764775 55764272 3.930000e-123 451
8 TraesCS7D01G302700 chr2B 82.941 510 78 6 1068 1574 88434962 88434459 3.930000e-123 451
9 TraesCS7D01G302700 chr4D 85.441 261 37 1 1 260 113875498 113875758 1.180000e-68 270


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G302700 chr7D 382753768 382756358 2590 True 4785 4785 100.000000 1 2591 1 chr7D.!!$R1 2590
1 TraesCS7D01G302700 chr7A 430813562 430815288 1726 True 1252 2300 91.764000 356 2028 2 chr7A.!!$R1 1672
2 TraesCS7D01G302700 chr7B 377134366 377137118 2752 True 1215 1690 92.768333 1 2545 3 chr7B.!!$R1 2544
3 TraesCS7D01G302700 chr2A 57175725 57176228 503 True 457 457 83.071000 1068 1574 1 chr2A.!!$R1 506
4 TraesCS7D01G302700 chr2D 55764272 55764775 503 True 451 451 82.874000 1068 1574 1 chr2D.!!$R1 506
5 TraesCS7D01G302700 chr2B 88434459 88434962 503 True 451 451 82.941000 1068 1574 1 chr2B.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.618458 GCTACCCCAAGTCATCACCA 59.382 55.0 0.0 0.0 0.0 4.17 F
386 387 1.024271 CTCTCTCTCTCCCTTGCTCG 58.976 60.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1534 0.034896 GGCACTCGAAGTCCTGGAAA 59.965 55.0 0.0 0.0 0.00 3.13 R
1739 2025 0.602638 TGGCGAGCACCACTAAACTG 60.603 55.0 0.0 0.0 33.75 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.099266 TGTTGTGAACTTTCCCCAAATGAG 59.901 41.667 0.00 0.00 0.00 2.90
66 67 4.706962 GTGAACTTTCCCCAAATGAGCTAT 59.293 41.667 0.00 0.00 0.00 2.97
78 79 6.980397 CCCAAATGAGCTATAAATTTGTCCAC 59.020 38.462 16.32 0.00 38.87 4.02
116 117 6.126332 ACCCCAAACCAATTCCTGTTAATTTT 60.126 34.615 0.00 0.00 0.00 1.82
118 119 6.995091 CCCAAACCAATTCCTGTTAATTTTCA 59.005 34.615 0.00 0.00 0.00 2.69
142 143 3.326297 AGCCATTGGATTCCTCTAGCTAC 59.674 47.826 6.95 0.00 0.00 3.58
157 158 0.618458 GCTACCCCAAGTCATCACCA 59.382 55.000 0.00 0.00 0.00 4.17
170 171 1.270550 CATCACCAAACACCTTCTGCC 59.729 52.381 0.00 0.00 0.00 4.85
198 199 6.769134 TTCTGTGATCAATGATTGAAGCAT 57.231 33.333 12.36 0.00 43.95 3.79
218 219 4.699257 GCATCAAATGAGTTCTCCTTGAGT 59.301 41.667 14.88 6.11 30.10 3.41
231 232 8.129211 AGTTCTCCTTGAGTTCAAATTTTTACG 58.871 33.333 0.00 0.00 35.15 3.18
233 234 7.861630 TCTCCTTGAGTTCAAATTTTTACGAG 58.138 34.615 0.00 0.00 35.15 4.18
280 281 3.059166 CTGGTAAAAGTTGCAATGCCAC 58.941 45.455 0.59 1.09 0.00 5.01
301 302 1.756538 GGCTCAATAATTGGTGGGTGG 59.243 52.381 0.00 0.00 0.00 4.61
321 322 2.688477 GAACCCATCCATCTCTCCTCT 58.312 52.381 0.00 0.00 0.00 3.69
322 323 2.100128 ACCCATCCATCTCTCCTCTG 57.900 55.000 0.00 0.00 0.00 3.35
323 324 1.350071 CCCATCCATCTCTCCTCTGG 58.650 60.000 0.00 0.00 0.00 3.86
324 325 1.132913 CCCATCCATCTCTCCTCTGGA 60.133 57.143 0.00 0.00 42.95 3.86
325 326 1.969923 CCATCCATCTCTCCTCTGGAC 59.030 57.143 0.00 0.00 41.65 4.02
326 327 2.675583 CATCCATCTCTCCTCTGGACA 58.324 52.381 0.00 0.00 41.65 4.02
327 328 2.450867 TCCATCTCTCCTCTGGACAG 57.549 55.000 0.00 0.00 34.17 3.51
328 329 1.643286 TCCATCTCTCCTCTGGACAGT 59.357 52.381 0.00 0.00 34.17 3.55
329 330 2.031120 CCATCTCTCCTCTGGACAGTC 58.969 57.143 0.00 0.00 31.38 3.51
330 331 2.031120 CATCTCTCCTCTGGACAGTCC 58.969 57.143 13.35 13.35 36.96 3.85
378 379 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
381 382 3.713764 CTCTCTCTCTCTCTCTCTCCCTT 59.286 52.174 0.00 0.00 0.00 3.95
382 383 3.455910 TCTCTCTCTCTCTCTCTCCCTTG 59.544 52.174 0.00 0.00 0.00 3.61
386 387 1.024271 CTCTCTCTCTCCCTTGCTCG 58.976 60.000 0.00 0.00 0.00 5.03
414 416 5.063060 ACATGTTAGTCGCGACTTATTTTCC 59.937 40.000 42.90 23.21 42.54 3.13
431 433 8.755696 TTATTTTCCAAATTGAAAGATGTCCG 57.244 30.769 0.00 0.00 35.77 4.79
439 441 7.117523 CCAAATTGAAAGATGTCCGCAAAAATA 59.882 33.333 0.00 0.00 0.00 1.40
511 513 8.773404 TTGGTCTCAATACTAAAGCTAACTTC 57.227 34.615 0.00 0.00 34.05 3.01
512 514 7.328737 TGGTCTCAATACTAAAGCTAACTTCC 58.671 38.462 0.00 0.00 34.05 3.46
684 696 4.661993 TGCTTCACTACTAACATTTGCG 57.338 40.909 0.00 0.00 0.00 4.85
694 706 2.166821 AACATTTGCGTACCGTACCA 57.833 45.000 3.04 0.16 0.00 3.25
939 1201 6.071447 CCCATCAAACAAGTTGGTTATGATGA 60.071 38.462 26.62 13.90 41.84 2.92
1010 1272 7.050970 AGCTCTAACATACAATGGATACGAA 57.949 36.000 0.00 0.00 42.51 3.85
1191 1459 2.758089 GCAGGCGCTGGATTCACTG 61.758 63.158 7.64 4.34 34.30 3.66
1626 1899 0.454957 GATCGCACGCTGCAACAAAT 60.455 50.000 0.00 0.00 45.36 2.32
1652 1925 1.183030 TCGTCTCGTTCATGGGTGGT 61.183 55.000 0.00 0.00 0.00 4.16
1721 2007 9.903682 ACATGTGCTTATATCTTTTATTCATGC 57.096 29.630 0.00 0.00 33.52 4.06
1739 2025 5.348986 TCATGCGTCCTTCACTAATTAGTC 58.651 41.667 15.35 2.70 33.46 2.59
1771 2060 2.079925 GCTCGCCAGGATAATCATTCC 58.920 52.381 0.00 0.00 0.00 3.01
1772 2061 2.704572 CTCGCCAGGATAATCATTCCC 58.295 52.381 0.00 0.00 33.45 3.97
1848 2137 3.057019 GGACCAAGGAAAACATTTTCGC 58.943 45.455 10.22 4.80 45.68 4.70
1857 2146 5.408299 AGGAAAACATTTTCGCCTAAATTGC 59.592 36.000 10.22 0.00 45.68 3.56
1872 2161 6.083630 CCTAAATTGCGACGAAATTTGAGAA 58.916 36.000 28.93 13.41 37.68 2.87
1928 2250 9.748708 GGAAAATGTAATTATGTGTACATGCAT 57.251 29.630 7.73 1.14 39.47 3.96
2085 2413 6.207691 ACAAGTCATTTTATGATTTCCCCG 57.792 37.500 0.00 0.00 42.04 5.73
2111 2439 8.910944 GGAGGATGCAAATGCTCATATTATTAT 58.089 33.333 10.51 0.00 40.26 1.28
2207 2535 4.945543 TGCGGATCTACAGTTCTACACTAA 59.054 41.667 0.00 0.00 32.76 2.24
2239 2567 7.823745 AAGTTTGGTCAACATATCAAGACTT 57.176 32.000 0.00 0.00 37.93 3.01
2282 2610 9.196552 GCTAAAAAGAGCTATTTTCAACAATGT 57.803 29.630 18.70 4.23 39.50 2.71
2304 2632 7.979115 TGTTTGAGTAATTTCAAAAACCTCG 57.021 32.000 6.83 0.00 45.62 4.63
2307 2635 6.928979 TGAGTAATTTCAAAAACCTCGTCA 57.071 33.333 0.00 0.00 0.00 4.35
2320 2648 4.303086 ACCTCGTCATCGTAAATACCAG 57.697 45.455 0.00 0.00 38.33 4.00
2328 2656 4.340097 TCATCGTAAATACCAGACATCCGT 59.660 41.667 0.00 0.00 0.00 4.69
2339 2667 4.520874 ACCAGACATCCGTCATAGATACAG 59.479 45.833 0.00 0.00 45.23 2.74
2343 2671 7.284261 CCAGACATCCGTCATAGATACAGATAT 59.716 40.741 0.00 0.00 45.23 1.63
2421 2751 3.140144 AGGTTCAGGAGAGAGGAGGATAG 59.860 52.174 0.00 0.00 0.00 2.08
2428 2758 3.356290 GAGAGAGGAGGATAGGAGATGC 58.644 54.545 0.00 0.00 0.00 3.91
2435 2765 1.707989 AGGATAGGAGATGCGAGGAGA 59.292 52.381 0.00 0.00 0.00 3.71
2447 2777 2.030045 GCGAGGAGAGGGACAATAGGT 61.030 57.143 0.00 0.00 0.00 3.08
2462 2792 1.204146 TAGGTGTCAGGAGGATTGGC 58.796 55.000 0.00 0.00 0.00 4.52
2465 2795 0.535335 GTGTCAGGAGGATTGGCGTA 59.465 55.000 0.00 0.00 0.00 4.42
2491 2821 2.580867 GAGCAGCGTAGGCGTGAG 60.581 66.667 1.05 0.00 46.35 3.51
2503 2833 2.503061 CGTGAGGAGGAGGCATGG 59.497 66.667 0.00 0.00 0.00 3.66
2505 2835 3.473647 TGAGGAGGAGGCATGGCG 61.474 66.667 14.30 0.00 0.00 5.69
2547 2877 4.382852 GGCTAGGGAGGCTGAGAA 57.617 61.111 0.00 0.00 44.83 2.87
2548 2878 2.847201 GGCTAGGGAGGCTGAGAAT 58.153 57.895 0.00 0.00 44.83 2.40
2549 2879 0.396060 GGCTAGGGAGGCTGAGAATG 59.604 60.000 0.00 0.00 44.83 2.67
2550 2880 1.418334 GCTAGGGAGGCTGAGAATGA 58.582 55.000 0.00 0.00 0.00 2.57
2551 2881 1.765314 GCTAGGGAGGCTGAGAATGAA 59.235 52.381 0.00 0.00 0.00 2.57
2552 2882 2.484594 GCTAGGGAGGCTGAGAATGAAC 60.485 54.545 0.00 0.00 0.00 3.18
2553 2883 1.661463 AGGGAGGCTGAGAATGAACA 58.339 50.000 0.00 0.00 0.00 3.18
2554 2884 1.558756 AGGGAGGCTGAGAATGAACAG 59.441 52.381 0.00 0.00 37.22 3.16
2555 2885 1.407989 GGGAGGCTGAGAATGAACAGG 60.408 57.143 0.00 0.00 35.05 4.00
2556 2886 1.556911 GGAGGCTGAGAATGAACAGGA 59.443 52.381 0.00 0.00 35.05 3.86
2557 2887 2.026822 GGAGGCTGAGAATGAACAGGAA 60.027 50.000 0.00 0.00 35.05 3.36
2558 2888 3.269178 GAGGCTGAGAATGAACAGGAAG 58.731 50.000 0.00 0.00 35.05 3.46
2559 2889 2.641815 AGGCTGAGAATGAACAGGAAGT 59.358 45.455 0.00 0.00 35.05 3.01
2560 2890 3.073650 AGGCTGAGAATGAACAGGAAGTT 59.926 43.478 0.00 0.00 44.93 2.66
2561 2891 3.190118 GGCTGAGAATGAACAGGAAGTTG 59.810 47.826 0.00 0.00 41.51 3.16
2562 2892 3.190118 GCTGAGAATGAACAGGAAGTTGG 59.810 47.826 0.00 0.00 41.51 3.77
2563 2893 3.149196 TGAGAATGAACAGGAAGTTGGC 58.851 45.455 0.00 0.00 41.51 4.52
2564 2894 2.154462 AGAATGAACAGGAAGTTGGCG 58.846 47.619 0.00 0.00 41.51 5.69
2565 2895 0.598065 AATGAACAGGAAGTTGGCGC 59.402 50.000 0.00 0.00 41.51 6.53
2566 2896 0.250901 ATGAACAGGAAGTTGGCGCT 60.251 50.000 7.64 0.00 41.51 5.92
2567 2897 1.165907 TGAACAGGAAGTTGGCGCTG 61.166 55.000 7.64 0.00 41.51 5.18
2568 2898 2.463675 GAACAGGAAGTTGGCGCTGC 62.464 60.000 7.64 0.00 41.51 5.25
2569 2899 2.670934 CAGGAAGTTGGCGCTGCT 60.671 61.111 7.64 0.00 0.00 4.24
2570 2900 2.113986 AGGAAGTTGGCGCTGCTT 59.886 55.556 7.64 9.38 0.00 3.91
2571 2901 1.968540 AGGAAGTTGGCGCTGCTTC 60.969 57.895 21.71 21.71 38.22 3.86
2572 2902 2.174349 GAAGTTGGCGCTGCTTCG 59.826 61.111 7.64 0.00 30.94 3.79
2573 2903 3.314388 GAAGTTGGCGCTGCTTCGG 62.314 63.158 7.64 0.00 30.94 4.30
2574 2904 4.626081 AGTTGGCGCTGCTTCGGT 62.626 61.111 7.64 0.00 0.00 4.69
2575 2905 2.725203 AAGTTGGCGCTGCTTCGGTA 62.725 55.000 7.64 0.00 0.00 4.02
2576 2906 2.434185 TTGGCGCTGCTTCGGTAG 60.434 61.111 7.64 0.00 0.00 3.18
2577 2907 3.950794 TTGGCGCTGCTTCGGTAGG 62.951 63.158 7.64 0.00 0.00 3.18
2578 2908 4.143333 GGCGCTGCTTCGGTAGGA 62.143 66.667 7.64 0.00 0.00 2.94
2579 2909 2.125673 GCGCTGCTTCGGTAGGAA 60.126 61.111 0.00 0.00 0.00 3.36
2588 2918 2.233305 TTCGGTAGGAAGAGGAGCTT 57.767 50.000 0.00 0.00 40.25 3.74
2589 2919 1.475403 TCGGTAGGAAGAGGAGCTTG 58.525 55.000 0.00 0.00 36.83 4.01
2590 2920 1.005569 TCGGTAGGAAGAGGAGCTTGA 59.994 52.381 0.00 0.00 36.83 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.026744 TCATTTGGGGAAAGTTCACAACA 58.973 39.130 0.00 0.00 30.30 3.33
40 41 4.620982 CTCATTTGGGGAAAGTTCACAAC 58.379 43.478 0.00 0.00 30.30 3.32
62 63 7.553881 TTGAGCTAGTGGACAAATTTATAGC 57.446 36.000 0.00 0.00 35.52 2.97
66 67 8.296713 GTCAATTTGAGCTAGTGGACAAATTTA 58.703 33.333 15.20 8.17 44.76 1.40
78 79 3.193479 GGTTTGGGGTCAATTTGAGCTAG 59.807 47.826 23.53 0.00 43.82 3.42
116 117 3.744940 AGAGGAATCCAATGGCTTTGA 57.255 42.857 14.11 1.95 37.53 2.69
118 119 3.203934 AGCTAGAGGAATCCAATGGCTTT 59.796 43.478 8.43 0.00 27.32 3.51
142 143 1.613437 GTGTTTGGTGATGACTTGGGG 59.387 52.381 0.00 0.00 0.00 4.96
157 158 3.068590 CAGAATTGTGGCAGAAGGTGTTT 59.931 43.478 2.75 0.00 0.00 2.83
170 171 7.009265 GCTTCAATCATTGATCACAGAATTGTG 59.991 37.037 0.00 0.13 44.50 3.33
186 187 7.406031 AGAACTCATTTGATGCTTCAATCAT 57.594 32.000 15.04 5.00 41.38 2.45
198 199 5.928976 TGAACTCAAGGAGAACTCATTTGA 58.071 37.500 15.02 15.02 35.20 2.69
218 219 5.411669 GGGAGAGCTCTCGTAAAAATTTGAA 59.588 40.000 32.08 0.00 43.76 2.69
231 232 1.687563 GGTGACTAGGGAGAGCTCTC 58.312 60.000 31.89 31.89 42.14 3.20
233 234 0.260523 AGGGTGACTAGGGAGAGCTC 59.739 60.000 5.27 5.27 0.00 4.09
280 281 1.405105 CACCCACCAATTATTGAGCCG 59.595 52.381 6.50 0.00 0.00 5.52
301 302 2.368221 CAGAGGAGAGATGGATGGGTTC 59.632 54.545 0.00 0.00 0.00 3.62
305 306 1.969923 GTCCAGAGGAGAGATGGATGG 59.030 57.143 0.00 0.00 44.59 3.51
307 308 2.247111 ACTGTCCAGAGGAGAGATGGAT 59.753 50.000 16.11 0.00 44.67 3.41
310 311 2.031120 GGACTGTCCAGAGGAGAGATG 58.969 57.143 21.70 0.00 44.67 2.90
311 312 1.063266 GGGACTGTCCAGAGGAGAGAT 60.063 57.143 26.94 1.85 44.67 2.75
324 325 2.505819 GAGAGAGAGAGAGAGGGACTGT 59.494 54.545 0.00 0.00 41.55 3.55
325 326 2.774234 AGAGAGAGAGAGAGAGGGACTG 59.226 54.545 0.00 0.00 41.55 3.51
327 328 3.041946 AGAGAGAGAGAGAGAGAGGGAC 58.958 54.545 0.00 0.00 0.00 4.46
328 329 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
329 330 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
330 331 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
378 379 3.067106 ACTAACATGTGAACGAGCAAGG 58.933 45.455 0.00 0.00 0.00 3.61
381 382 2.324860 CGACTAACATGTGAACGAGCA 58.675 47.619 0.00 0.00 0.00 4.26
382 383 1.059264 GCGACTAACATGTGAACGAGC 59.941 52.381 0.00 0.00 0.00 5.03
386 387 2.325761 AGTCGCGACTAACATGTGAAC 58.674 47.619 38.67 8.91 40.43 3.18
414 416 5.903764 TTTTGCGGACATCTTTCAATTTG 57.096 34.783 0.00 0.00 0.00 2.32
592 599 6.009908 ACTAAACCAGGTGTAGGAGTTTTT 57.990 37.500 19.69 0.00 33.09 1.94
594 601 5.842874 ACTACTAAACCAGGTGTAGGAGTTT 59.157 40.000 24.98 7.48 43.00 2.66
606 618 9.906660 TTCAAAATGCAATAACTACTAAACCAG 57.093 29.630 0.00 0.00 0.00 4.00
684 696 5.467735 ACAACTTTCAATCTTGGTACGGTAC 59.532 40.000 9.82 9.82 0.00 3.34
694 706 5.058490 CCCATGCAAACAACTTTCAATCTT 58.942 37.500 0.00 0.00 0.00 2.40
1266 1534 0.034896 GGCACTCGAAGTCCTGGAAA 59.965 55.000 0.00 0.00 0.00 3.13
1626 1899 2.576053 GAACGAGACGATGCGCGA 60.576 61.111 12.10 0.00 44.57 5.87
1721 2007 8.027771 ACTAAACTGACTAATTAGTGAAGGACG 58.972 37.037 22.68 4.93 38.19 4.79
1739 2025 0.602638 TGGCGAGCACCACTAAACTG 60.603 55.000 0.00 0.00 33.75 3.16
1771 2060 5.556006 AATTGCCCATAATTGGAAGATGG 57.444 39.130 0.00 0.00 46.92 3.51
1848 2137 5.627172 TCTCAAATTTCGTCGCAATTTAGG 58.373 37.500 13.87 10.24 33.05 2.69
1872 2161 4.381411 GGCCTTAAGCGAAGAATCAGTAT 58.619 43.478 0.00 0.00 45.17 2.12
1936 2258 6.911250 ATTTTGGTAATTTTCGGAGAAGGT 57.089 33.333 0.00 0.00 45.90 3.50
1982 2310 8.726988 ACTACATGCGTTAATTTTCTTGTGTAT 58.273 29.630 0.00 0.00 0.00 2.29
2035 2363 4.881273 TGATTTCCTCGTGGGTCATAAATG 59.119 41.667 3.23 0.00 36.25 2.32
2048 2376 4.811555 TGACTTGTTTGTGATTTCCTCG 57.188 40.909 0.00 0.00 0.00 4.63
2085 2413 6.770746 ATAATATGAGCATTTGCATCCTCC 57.229 37.500 5.20 0.00 45.16 4.30
2183 2511 3.762288 AGTGTAGAACTGTAGATCCGCAA 59.238 43.478 0.00 0.00 37.88 4.85
2185 2513 5.066246 ACTTAGTGTAGAACTGTAGATCCGC 59.934 44.000 0.00 0.00 40.26 5.54
2186 2514 6.680874 ACTTAGTGTAGAACTGTAGATCCG 57.319 41.667 0.00 0.00 40.26 4.18
2207 2535 9.349713 TGATATGTTGACCAAACTTTAGAAACT 57.650 29.630 0.00 0.00 39.70 2.66
2220 2548 9.959749 GTTTTTAAAGTCTTGATATGTTGACCA 57.040 29.630 0.00 0.00 0.00 4.02
2260 2588 9.598517 TCAAACATTGTTGAAAATAGCTCTTTT 57.401 25.926 9.37 9.37 34.59 2.27
2276 2604 9.665719 AGGTTTTTGAAATTACTCAAACATTGT 57.334 25.926 5.06 0.00 43.29 2.71
2278 2606 9.030301 CGAGGTTTTTGAAATTACTCAAACATT 57.970 29.630 5.06 0.00 43.29 2.71
2280 2608 7.540299 ACGAGGTTTTTGAAATTACTCAAACA 58.460 30.769 5.06 0.00 43.29 2.83
2281 2609 7.698970 TGACGAGGTTTTTGAAATTACTCAAAC 59.301 33.333 5.06 1.12 43.29 2.93
2282 2610 7.763356 TGACGAGGTTTTTGAAATTACTCAAA 58.237 30.769 1.91 1.91 42.21 2.69
2304 2632 4.680110 CGGATGTCTGGTATTTACGATGAC 59.320 45.833 0.00 0.00 0.00 3.06
2307 2635 4.340097 TGACGGATGTCTGGTATTTACGAT 59.660 41.667 0.00 0.00 45.70 3.73
2320 2648 9.862371 AAAATATCTGTATCTATGACGGATGTC 57.138 33.333 7.25 0.00 41.86 3.06
2390 2718 6.012333 TCCTCTCTCCTGAACCTATATCTACC 60.012 46.154 0.00 0.00 0.00 3.18
2391 2719 7.023171 TCCTCTCTCCTGAACCTATATCTAC 57.977 44.000 0.00 0.00 0.00 2.59
2421 2751 1.152652 TCCCTCTCCTCGCATCTCC 60.153 63.158 0.00 0.00 0.00 3.71
2428 2758 1.683917 CACCTATTGTCCCTCTCCTCG 59.316 57.143 0.00 0.00 0.00 4.63
2447 2777 0.824109 CTACGCCAATCCTCCTGACA 59.176 55.000 0.00 0.00 0.00 3.58
2452 2782 0.947244 CATTGCTACGCCAATCCTCC 59.053 55.000 0.00 0.00 33.35 4.30
2462 2792 1.485838 CGCTGCTCCTCATTGCTACG 61.486 60.000 0.00 0.00 0.00 3.51
2465 2795 0.179089 CTACGCTGCTCCTCATTGCT 60.179 55.000 0.00 0.00 0.00 3.91
2478 2808 3.141488 CCTCCTCACGCCTACGCT 61.141 66.667 0.00 0.00 45.53 5.07
2525 2855 2.139484 CAGCCTCCCTAGCCTCCTG 61.139 68.421 0.00 0.00 0.00 3.86
2541 2871 3.190118 GCCAACTTCCTGTTCATTCTCAG 59.810 47.826 0.00 0.00 36.63 3.35
2545 2875 1.401539 GCGCCAACTTCCTGTTCATTC 60.402 52.381 0.00 0.00 36.63 2.67
2546 2876 0.598065 GCGCCAACTTCCTGTTCATT 59.402 50.000 0.00 0.00 36.63 2.57
2547 2877 0.250901 AGCGCCAACTTCCTGTTCAT 60.251 50.000 2.29 0.00 36.63 2.57
2548 2878 1.148273 AGCGCCAACTTCCTGTTCA 59.852 52.632 2.29 0.00 36.63 3.18
2549 2879 1.576421 CAGCGCCAACTTCCTGTTC 59.424 57.895 2.29 0.00 36.63 3.18
2550 2880 2.555547 GCAGCGCCAACTTCCTGTT 61.556 57.895 2.29 0.00 39.92 3.16
2551 2881 2.965716 AAGCAGCGCCAACTTCCTGT 62.966 55.000 2.29 0.00 0.00 4.00
2552 2882 2.192608 GAAGCAGCGCCAACTTCCTG 62.193 60.000 18.81 4.31 34.95 3.86
2553 2883 1.968540 GAAGCAGCGCCAACTTCCT 60.969 57.895 18.81 0.00 34.95 3.36
2554 2884 2.563427 GAAGCAGCGCCAACTTCC 59.437 61.111 18.81 6.08 34.95 3.46
2555 2885 2.174349 CGAAGCAGCGCCAACTTC 59.826 61.111 19.33 19.33 37.13 3.01
2556 2886 2.725203 TACCGAAGCAGCGCCAACTT 62.725 55.000 2.29 5.13 0.00 2.66
2557 2887 3.234630 TACCGAAGCAGCGCCAACT 62.235 57.895 2.29 0.00 0.00 3.16
2558 2888 2.740714 CTACCGAAGCAGCGCCAAC 61.741 63.158 2.29 0.00 0.00 3.77
2559 2889 2.434185 CTACCGAAGCAGCGCCAA 60.434 61.111 2.29 0.00 0.00 4.52
2560 2890 4.451150 CCTACCGAAGCAGCGCCA 62.451 66.667 2.29 0.00 0.00 5.69
2561 2891 3.659089 TTCCTACCGAAGCAGCGCC 62.659 63.158 2.29 0.00 0.00 6.53
2562 2892 2.125673 TTCCTACCGAAGCAGCGC 60.126 61.111 0.00 0.00 0.00 5.92
2563 2893 0.526524 CTCTTCCTACCGAAGCAGCG 60.527 60.000 0.00 0.00 46.60 5.18
2564 2894 0.179097 CCTCTTCCTACCGAAGCAGC 60.179 60.000 0.00 0.00 46.60 5.25
2565 2895 1.407258 CTCCTCTTCCTACCGAAGCAG 59.593 57.143 0.00 0.00 46.60 4.24
2566 2896 1.475403 CTCCTCTTCCTACCGAAGCA 58.525 55.000 0.00 0.00 46.60 3.91
2567 2897 0.103390 GCTCCTCTTCCTACCGAAGC 59.897 60.000 0.00 0.00 46.60 3.86
2569 2899 1.825474 CAAGCTCCTCTTCCTACCGAA 59.175 52.381 0.00 0.00 31.27 4.30
2570 2900 1.005569 TCAAGCTCCTCTTCCTACCGA 59.994 52.381 0.00 0.00 31.27 4.69
2571 2901 1.475403 TCAAGCTCCTCTTCCTACCG 58.525 55.000 0.00 0.00 31.27 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.