>input_sequence_74949
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-------------------------------------------------------------ATGGATACGAAGCAGAGCG
TCGCGGCGGTGGTGAAGCCGTCGTTG------GATGGCGGTGCCCCGGCCACGGCGTCGTTCCGTCTCCGCAACGGCAGC
CTCAACTCGGTTCGCCTCCGCCGGGTATTCGACCTGTTCGACAAGAACGGCGACGGTCAGATCACGGTCGACGAGCTGGC
GCAGGCGCTGGATTCACTGGGGCTCGTCGCCGACCGCGAGGGCCTGGCCTCCACCGTGGGCGCATACGTCCCCGAGGGCG
CGGCGGGGCTTCGTTTCCAGGACTTCGAGTGCCTCCACCGTGAGCTGGGTGACGCGCTCTTCGGCGCGCTGGACGACGTG
CCTGAGGATGGCGAGGCCGGCGCGGGCGGGGACGAGGAGGAGATGAAGGAGGCGTTCAAGGTGTTCGACGTGGACGGCGA
CGGCTTCATCTCGGCAACCGAGCTGCAGGAGGTGCTCAAGAAGCTGGGCCTCCCCGAGGGCGGCAGCCTCGCCACCGTGC
GCCAGATGATTTGCAACGTCGACCGTAACAGCGACGGCCGCGTCGACTTTGGGGAGTTCAAGTGCATGATGAAGGGGATC
ACGGTGTGGGGCGCGTGA--------------------------------------------------------------
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>chr7D_1_TraesCS7D01G302700
AAAACCCCTTCTGACGAAATCTATGGATGAAATAGTTTATGTTGTGAACTTTCCCCAAATGAGCTATAAATTTGTCCACT
AGCTCAAATTGACCCCAAACCAATTCCTGTTAATTTTCAAAGCCATTGGATTCCTCTAGCTACCCCAAGTCATCACCAAA
CACCTTCTGCCACAATTCTGTGATCAATGATTGAAGCATCAAATGAGTTCTCCTTGAGTTCAAATTTTTACGAGAGCTCT
CCCTAGTCACCCTCTACCTCTGGTAAAAGTTGCAATGCCACGGCTCAATAATTGGTGGGTGGAACCCATCCATCTCTCCT
CTGGACAGTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGCTCGTTCACATGTTAGT
CGCGACTTA-TTTTCCAAATTGAAAGATGTCCGCAAAAATAAAAAAGCAACATTAGTTGTGAGACTAAACAATTAGTACA
AACTTAATTGGTCTCAATACTAAAGCTAACTTCCAAAAA----TATTTTGTCAAAATGTAATACAAATGAGATGT-TTTT
TTGAAGAGCTCGTTGCGAGGAACCTAAAAGTAAAAAAAAAA-----AACTCCTACACCTGGTTTAGTAGTTATTGCATTT
TGAATTTACAAAAATGGAATTCAAATGCACGAGTTGCTTCACTACTAACATTTGCGTACCGTACCAAGATTGAAAGTTGT
TTGCATGGGACAAGTGTGGGAACCATGCCATGCATGAATGTA--------------------------------------
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----------------------------------------------------TAGAATGTTAGGTTGGTGGCATTTTCCT
AAAAAGGGTGCGTGCTAGTTTAGTAAATTTAAATGGAAAGCTTTTGCTTGCTGTAAGCAGGTCCGTAGACAAATTAGACA
AGAAATATTTTAGGCCACGTGTTGTTTCCATGGCAAAACCACCCAATGCGCTCGACCCATCAAACAAGTTGGTTATGATG
ACCAACATATATAAGAAAAACGTTGTCGCCAAAAATTGGTAGCAGGAAGCTCTAACATACAATGGATACGAAGCAGAGCG
TCGCGGCGGTGGTGAAGCCGTCGTTG------GATGGCGGTGCCCCGGCCACGGCGTCGTTCCGTCTCCGCAACGGCAGC
CTCAACTCGGTTCGCCTCCGCCGGGTATTCGACCTGTTCGACAAGAACGGCGACGGTCAGATCACGGTCGACGAGCTGGC
GCAGGCGCTGGATTCACTGGGGCTCGTCGCCGACCGCGAGGGCCTGGCCTCCACCGTGGGCGCATACGTCCCCGAGGGCG
CGGCGGGGCTTCGTTTCCAGGACTTCGAGTGCCTCCACCGTGAGCTGGGTGACGCGCTCTTCGGCGCGCTGGACGACGTG
CCTGAGGATGGCGAGGCCGGCGCGGGCGGGGACGAGGAGGAGATGAAGGAGGCGTTCAAGGTGTTCGACGTGGACGGCGA
CGGCTTCATCTCGGCAACCGAGCTGCAGGAGGTGCTCAAGAAGCTGGGCCTCCCCGAGGGCGGCAGCCTCGCCACCGTGC
GCCAGATGATTTGCAACGTCGACCGTAACAGCGACGGCCGCGTCGACTTTGGGGAGTTCAAGTGCATGATGAAGGGGATC
ACGGTGTGGGGCGCGTGACCATCGAAACCAA-----TCCGATCGCACGCTGCAACAAATCGCGCATCGTCTCGTTCATGG
GTGGTGATCAGAATCGGTTTCCGTCGATCAA------------AAATTGGTTGCTA-TGTACATGTGCTTATATCTTTTA
TTCATGCGTCCTTCACTAATTAGTCAGTT---TAGTGGTGCTCGCCAGGATAATCATTCCCATCTTCCAATTATGGGCAA
TTTATATTTCTAATACTAAATTGTACCATGAGATGGGACCAAGGAAAACATTTTCGCCTAAATTGCGACGAAATTTGAGA
ATACTGATTCTTCGCT---------------------------------TAAGGCCCACAAAGGGAAAATGTAATTATGT
GTACATGCATATATAAAACCTTCTCCGAAAATTACCAAAATTCAT------ACTTGTAAGTTTTAGAAAATACACAAGAA
AATTAACGCATGTAGTTATAAATGTTTGTAAGAAATTATGATCATTTATGACCCACGAGGAAATCACAAACAAGTCATTT
TATGATTTCCCCGGAGGATGCAAATGCTCATATTATTATTTTTCAGTAATTTAAGAGTGAATTTCTATTTGTCCTCTACA
TGCATGATATTTTTCATAATTTTGCAAGACTTGCGGATCTACAGTTCTACACTAAGTTTCTAAAGTTTGGTCAACATATC
AAGACTTTAAAAACCTACTATTAGCTAAAAAGAGCTATTTTCAACAATGTTTGAGTAATTTCAAAAACCTCGTCATCGTA
AATACCAGACATCCGTCATAGATACAGATATTTTTTGAACCATGAATGTAAGATAATTACATCTAGAATACCATCATGG-
-TAGATATAGGTTCAGGAGAGAGGAGGATAGGAGATGCGAGGAGAGGGACAATAGGTGTCAGGAGGATTGGCGTAGCAAT
GAGGAGCAGCGTAGGCGTGAGGAGGAGGCATGGCGCGAGGAGGAGCGCCGCCAACAGGAGGCTAGGGAGGCTGAGAATGA
ACAGGAAGTTGGCGCTGCTTCGGTAGGAAGAGGAGCTTGA
>chr7B_1
AAAACCCCTTCTGACGAAATCTATGGATGAAATAGTTTACATTGTGAACTTTCCCCAAATGAACTACAAATTTGTCCAGT
AGCTCAAATTGACCCCAAACCAATTCCTGTTAATTTCC-AAGCCATTGGATTCCTCTAGCTAGCCCAAGTCATCACCGAA
CACCTTCTGCTACAATTCTGTGATCAGTGATTGAAGCACCAAATGAGTTCTCCTTGAGCTCAAATTTTTACAAAAGCTCT
CCCTAGTCACCCTCTACCTCTGGTAAAAGTTGCAATGCCATGGCTCAATAATTGGTGGGTGAAACACCTCTCTCTCTCT-
-----------CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCACATGTTAGT
CGCGACTTA-TTTTCTAAATTGAAAGATGTCCACAAAAAT-AAAAAGCAACATTAGTTGTGAGACTAGACAATTAGTACA
AACTTAATTGGTCTCAATACTAAAACTAACTTAAAAAAA----T----TGTCAAAATGT-ATACAAATGAGATAT-TTTT
TT-AAGAGCTCGTTGCGAGGAACCTAAAAGTAAAAAAACATATTATAACTCCTACACTTGGTTTAGTAGTTATTGCATTT
TGAATTTACAGAAATGGAATTCAAATGCACGAGTTGCTTCACTACTAACATTTGCATACCGTACCCAGATTGAAAGTTGT
TTGCATGGGACAAGTGTGGGAACCATGC-----ATGAATGTATAGTACTCCCTCTGTTCTTAAATATAAGTCTTTGTAGA
TATTTCATTATGGATTACATATGGATGTATGTAAATGCATTTTAGAGTGTAGATTCACTCATTTTTGCTCTGTATGTAGT
TCGTAGTGAAATCTCTAGAAAAACTTATACTTCCTCTGTCCCAAAATATAAGAACGTTTTTAACACTACATTAATGTTAA
AAACGTTCTTATATTATGGGACGAAGGAAGTAGTATTTAGGAACGGAGGGAGTAGAATATTAGGTTGGTGGCATTTTACT
AAAAAGGGTGCGTGCTAGTTTAGTAAATTTAAATGGCAAGCTTTTGCTTGCTGTAAGCAGGTCCGTAGACAAATTAGACA
AGAAATATTTTAGGCCACGTGTTGTTTTCATGGCAAAACCACCCAATGCGCTCGACCCATCAAACATGTTGGTTATGATG
GCCAACATGTATAAGAAAAAAGTTGTCGCCAAAAATTGGTAGGAGGAG---CTAACATACAATGGATACGAGGCAGAGCG
TCGCGGCGGTGGTGAAGCCGTCGTTCCCCACCGATAGCGGTGCCCCGGCCACGGCGTCGTTCCGTCTCCGCAATGGCAGC
CTCAACTCGGTTCGCCTCCGCCGGGTGTTCGACCTGTTCGACAAGAACGGCGACGGTCAGATCACGGTCGACGAGCTGGC
GCAGGCGCTGGATTCGCTCGGGCTCGTCGCCGACCGCGAGGGCCTGGCCTCCACCGTGGGCGCATACGTCCCCGAGGGCG
CGGCGGGGCTTCGGTTCCAGGACTTCGAGTGCCTCCATCGTGAGCTGGGTGACGCGCTCTTCGGCGCGCTGGACGACGTG
CCCGAGGATGGCGAGGCCGGCGCGGGCGGGGACGAGGAGGAGATGAGGGAGGCGTTCAAGGTGTTCGACGTGGACGGCGA
CGGCTTCATCTCGGCAACCGAGCTGCAGGAGGTGCTCAAGAAGCTGGGCCTCCCAGAGGGCGGCAGCCTCGCCACCGTGC
GCCAGATGATTTGCAACGTCGACCGTAACAGCGACGGCCGCGTCGACTTTGGGGAGTTCAAGTGCATGATGAAGGGGATC
ACGGTGTGGGGCGCGTGACCATCGAAACCAATCGTGTCCGATCGCACGCTGCAACAAACCGCGCATCGTCTCGTTCATGG
GTGGCGATCAGAATCGGTTTCCGTCGATCAAGTACACCATCTTAAATTGGTTGCTA-TGTACATGTGCCTATATCTTTTA
TTCATGTGCCCTTCACTAATTAGTTAGTT---TAGTGGTGCTCGCCAGGATAATCATTCTTATCTTCCAATTATGGGCAA
TTTATATGTC------TAAATTGTACCATGAGATGAGACCAAGGAAAACATTTTCGGCG---------------------
--------------------------------------------------AAGGCCCACAAAGGGAAAATGTGATTATGT
GTACATGCACATATAAACCCTTCTCCGAAAATTACCAAAATTCAT------ACTTGTGAGTTTTAGAAATTACACAAGAA
AATTAATCCATGTATTTATAAATGTTCGTAAGAAATTATGATAATTTATGACCCATGAGGAAATCACAAACAAGTCATTT
TATGATTTCCCCAGAGGATGCAAATGCTCATATTATTACTTTTCAGTAATTTAAGAGTGAATTTCTATTTGTCCTCTACA
TGCATGATATTTTTCATAATTTTGCAAGACGTATGGATCTACAGTTCTACACTACGTTTCTAAAGTTGGGTCAACATATC
AAAACTCTAAAAACCTACTATCAGCTACAAAGAGCTATTTTTCGACAATGTTGAGTAATTTCAAAAACCTCATCGTCGTA
AATACCAAACATCCGCCATAGATACAAATAATTTACGCATCATGAATGCAAGATAATTACATCTAGAATACCATCATATG
ATAGATATAGGTTCAGGAGAGAGGAGGATACGAGATGAGAGGAGCGGGACAATAGGCGTCAAGAGGATTGGTGTGGCAAT
GAGGAGCGGCGTAGGCGTGACGAGGAGGCATGTCACGAGGAGGAGCGCCGCCAATAGGAGGCTAGGGAGGTTGA------
----------------------------------------
>chr7A_356
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-----------------------------------CTCTCTCTCTCTCTCTCTCTCTCTCTCACACA--CACATGTTAGT
CGCGATTATTTTTTCTAAATTGAAAGATGTCCACATAAAT-AAGAAGCAACATTAGTTGTGAGACTAAACAATTAGTACA
AACTTA-TTGGTCTGAATACTAAAGCTAATTTAAAAAAATATTT----TGTCAAAATGT-ATACAAATGAGATATATTTT
TT-AAAAGCTCATTGCGAGGAACCTAAGACT-AAAAAACATATTATAACTCCAACACTTGGTTTAGTAGTTATTGCATTT
TGAATCTACAAAAATGGAATTCAAACGCACGAGTTGCTTCACTACTAACATTTGCATACAGTACCCAGATTGAAAGTTGT
TTGCATAGGACAAGTGTGGAAACCATGCCATGCATGAATGTA--------------------------------------
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----------------------------------------------------TAGAATGTTAGGTTGGTGGCATTCTCCT
AAAAAGGGTGCGTGCTAGTTTAGTAAATTCAAATGGCAAGCTTTTGCTTGCTGTAAGCAGGTCCGTAGACAAATTAGACA
AGAAATATTTTAGGCCACGTGTTGTTTCCATGGCGAAACCACCCAATGCGCTCGACCCATCAAACAAGTTGGTTATGATG
GCCAGCATATATAAGAAAAAAGTTGTCGCCAAAAATTGGTAGCAGGAAGCTCTAACATACAATGGATACGAGGCAGAGCG
TCGCGGCGGTGGTGAAGCCGTCGTTG------GATGGCGGTGCCCCGGCCACGGCGTCGTTCCGTCTCCGTAACGGCAGC
CTCAACTCGGTTCGCCTCCGCCGGGTGTTCGACCTGTTCGACAAGAACGGCGACGGTCAGATCACGGTCGACGAGCTGGC
GCAGGCGCTGGATTCGCTCGGGCTCGTCGCCGACCGCGAGGGCCTGGCCTCCACTGTGGGCGCGTACGTCCCCGAGGGCG
CGGCGGGGCTTCGGTTCCAGGACTTCGAGTGCCTCCACCGTGAGCTGGGTGACGCGCTCTTCGGCGCGCTGGACGACGTG
CCCGAGGACGGCGAGGCCGGCGCGGGCGGGGACGAGGAGGAGATGAAGGAGGCGTTCAAGGTGTTCGACGTGGACGGCGA
CGGCTTCATCTCGGCAACCGAGCTGCAGGAGGTGCTCAAGAAGCTGGGCCTCCCCGAGGGCAGCAGCCTCGCCACCGTGC
GCCAGATGATTTGCAACGTCGACCGTAACAGCGACGGCCGCGTCGACTTTGGGGAGTTCAAGTGCATGATGAAGGGGATC
ACGGTGTTGGGCGCGTGACCATCGAAACCAATCGTGTCCGATCGCACGCTGCAACAAACCGCACATCCTCTCGTTCATGG
GTGGCGATCAGAATCGGTTCCCGTCAATCAAGTACACCATCTTAAATTGGATGCTAATGTACATGTGCTTATATCATTTA
TTCATGTGTCCTTCACTAATTAGTTAGTTTATTAGTGGTGCTCGCCAGGATAATCATTCTTATCTTCCAATTATGGGCAA
TTTATATTTC------TAAACTGTACCATGAGATGGGACCAAGGAAAACATTTTCGGCTAAATTGGGACGACATTTGAGA
GTACTGATTCTTCGCTTAAGGCCCACAAAGGGAGTACTTATTCTTCGCTTAAGGCCCACAAAGGGAAAATGTCATTATGT
GTACATGCACATATAAACCCTTCTCTGAAAATTACCAAATTCATACTTGTAACTTGTAAGTTTTAGAAATTACACAAGAA
AATTAACGCGTGTAGTTATAAATGTTCGTAAGAAA---------------------------------------------
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>chr2A_1068
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------------------------------------------------------CGTCGTTCCGCCTGCGCAACGGCAGC
CTGAACGCGGTGCGGCTGCGGCGCGTCTTCGACATGTTCGACCGCAACGGCGACGGCGAGATCACGGTGGACGAGCTGGC
GCAGGCGCTGGACGCGCTCGGGCTGGAGGCGGACCGCGCCAGCCTGGCCGCCACCGTCGGCGCGCACGTGCCGCCCGGCG
CCTCCGGGCTCCGCTTCGAGGACTTCGAGGGCCTCCACCGCGCGCTCGGCGACGCGCTCTTCGGCGCCCTCGCCGACGAC
GCCGAGGAGGGCGGCGCCGGCGGGCA---GGACGAGGAGGAGATGCGGGAGGCCTTCAAGGTGTTCGACGTCGACGGCGA
CGGCTTCATCTCGGCGTCGGAGCTGCAGGAGGTGCTCAAGAAGCTGGGCATGCCCGAGGCCAGCAGCCTGGCCAACGTCC
GGGAGATGATCTGCAACGTCGACCGCGACAGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGATCATGATGCAAGGGATC
A-------------------------------------------------------------------------------
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>chr2D_1068
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------------------------------------------------------CGTCGTTCCGCCTGCGCAACGGCAGC
CTGAACGCGGTGCGGCTGCGGCGCGTGTTCGACATGTTCGACCGCAACGGCGACGGCGAGATCACGGTGGACGAGCTGGC
GCAGGCGCTGGACGCGCTCGGGCTGGAGGCGGACCGCGCCAGCCTGGCCGCCACCGTGGGCGCGCACGTGCCGCCCGGCG
CCTCCGGGCTCCACTTCGAGGACTTCGAGGGCCTCCACCGCGCGCTCGGCGACGCGCTCTTCGGCGCCCTCGCCGACGAC
GCCGAGGAGGGCGGCGCCGGCGGGCA---GGACGAGGAGGAGATGCGGGAGGCCTTCAAGGTGTTCGACGTCGACGGCGA
CGGCTTCATCTCGGCGTCGGAGCTGCAGGAGGTGCTCAAGAAGCTGGGCATGCCCGAGGCCAGCAGCCTGGCCAACGTCC
GGGAGATGATCTGCAACGTCGACCGCGACAGCGACGGCCGCATCGACTTCGGCGAGTTCAAGATCATGATGCAAGGGATC
A-------------------------------------------------------------------------------
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>chr2B_1068
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------------------------------------------------------CGTCGTTCCGCCTGCGTAACGGCAGC
CTGAACGCGGTGCGGCTGCGGCGCGTGTTCGACATGTTCGACCGCAACGGCGACGGCCAGATCACGGTGGACGAGCTGGC
GCAGGCGCTTGACGCGCTCGGGCTGGAGGCGGACCGCGCCAGCCTGGCCGCCACCGTGGGCGCGCACGTGCCGCCCGGCG
CCTCCGGGCTCCGCTTCGAGGACTTCGAGGGCCTCCACCGCGCGCTCGGCGACGCGCTCTTCGGCGCCCTCGCGGACGAC
GCCGAGGAGGGCGGCGCCGGCGGGCA---GAACGAGGAGGAGATGCGGGAGGCCTTCAAGGTGTTCGACGTGGACGGCGA
CGGCTTCATCTCGGCGTCGGAGCTGCAGGAGGTGCTCAAGAAGCTGGGCATGCCCGAGGCCAGCAGCCTGGCCAACGTCC
GGGAGATGATCTGCAACGTCGACCGCGACAGCGACGGCCGCGTCGACTTCGGCGAGTTCAAGATCATGATGCAAGGGATC
A-------------------------------------------------------------------------------
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>SNPs
---------------------------------------SS---------------------S---S-----------S-
------------------------------------S-S-----------------------S--------------S--
----------S---------------S-----------S-------------------S------------S-S------
----------------------------------------S--------------------S---S-S--SS------SS
SSSSSSSSSSS-----------------------------------------------S--SS---S-------------
---------------S----------------S-------S---------------------------------------
--------------------------------SS----------SSSS-----------S-------------S------
--S-----------------------------------S-S----------------S----------------------
-------------------------------------------------------S---------S--------------
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------------------------------------S-------------------------------------------
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S-------------------S--------------------------------------------------S--------
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--------------------------S-----------------------------------------------------
---------------S--S-------------------------------------------------------------
-------------S------------------------------------------------------------------
--S-----------------------------------------------------------------------------
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----------------------------------------------------------S---------------------
----S---------------------------------------------------------------------------
------S-----------------S----------------------------------SS-------------------
----------SSSSSS----------------------------------------S--------S-----S--------
S-----------------------------------------------------------------------S-------
---------S-------S---------------------------------------------------S----------
--------------------------S---------------S------------S------------------------
------------S-------------------------S-----------------------------------------
------------------------------S-SS--------------------S------------S------------
--S---S--------------S-----S-------------SSSSS-SSS---------------------S--S-----
-------S-------S----------S---S---SS-S-S--------S----------------------------SS-
------------------------------S------S------S-----------S----S---------S--S-----
-------S------------S-----------S-S-------------------S---------------S---SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_158
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----------------------------------------------------------GCTACCCCAAGTCATCACCA--
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>reverse_1534
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-------------TTTCCAGGACTTCGAGTGCC-----------------------------------------------
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>forward_387
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-----------------------------------------------CTCTCTCTCTCCCTTGCTCG-------------
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>reverse_2025
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------------------------CAGTTTAGTGGTGCTCGCCA------------------------------------
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