Multiple sequence alignment - TraesCS7D01G273100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G273100 chr7D 100.000 2960 0 0 1 2960 263834130 263831171 0.000000e+00 5467.0
1 TraesCS7D01G273100 chr7D 100.000 28 0 0 1110 1137 619041042 619041069 5.000000e-03 52.8
2 TraesCS7D01G273100 chr7B 94.153 2155 78 21 173 2305 243871244 243869116 0.000000e+00 3238.0
3 TraesCS7D01G273100 chr7B 93.671 158 9 1 1 157 243871817 243871660 4.930000e-58 235.0
4 TraesCS7D01G273100 chr7B 100.000 28 0 0 1110 1137 713662257 713662284 5.000000e-03 52.8
5 TraesCS7D01G273100 chr7A 92.157 2193 111 21 803 2959 286819474 286817307 0.000000e+00 3040.0
6 TraesCS7D01G273100 chr7A 93.431 685 33 8 153 827 286820314 286819632 0.000000e+00 1005.0
7 TraesCS7D01G273100 chr7A 79.348 184 30 6 2336 2514 548815242 548815422 4.010000e-24 122.0
8 TraesCS7D01G273100 chr7A 100.000 28 0 0 1110 1137 712769677 712769704 5.000000e-03 52.8
9 TraesCS7D01G273100 chr5D 94.286 35 2 0 1110 1144 432533141 432533107 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G273100 chr7D 263831171 263834130 2959 True 5467.0 5467 100.000 1 2960 1 chr7D.!!$R1 2959
1 TraesCS7D01G273100 chr7B 243869116 243871817 2701 True 1736.5 3238 93.912 1 2305 2 chr7B.!!$R1 2304
2 TraesCS7D01G273100 chr7A 286817307 286820314 3007 True 2022.5 3040 92.794 153 2959 2 chr7A.!!$R1 2806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 1064 0.987081 ATGACTGATCCAGGCTGCCT 60.987 55.0 17.22 17.22 40.76 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 3002 0.103208 GTGCTCGTAGGGACAGGATG 59.897 60.0 0.0 0.0 46.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.724239 CGTATCGTTGTAAGTTTGGCTATG 58.276 41.667 0.00 0.00 0.00 2.23
88 89 2.143122 CTGTGCGGTATGTGTGAAACT 58.857 47.619 0.00 0.00 38.04 2.66
97 98 6.512091 GCGGTATGTGTGAAACTAAGTTTTCA 60.512 38.462 0.19 0.19 42.04 2.69
107 108 4.909880 AAACTAAGTTTTCAATCGCGAAGC 59.090 37.500 15.24 0.00 41.20 3.86
120 121 1.961277 CGAAGCGGATGTATGGCCC 60.961 63.158 0.00 0.00 0.00 5.80
135 136 5.837979 TGTATGGCCCACAAAATGCTTATAT 59.162 36.000 0.00 0.00 0.00 0.86
171 573 8.356000 AGGGAGTATGATACAGCTTAAGATAC 57.644 38.462 6.67 3.60 0.00 2.24
181 587 6.945938 ACAGCTTAAGATACGATGTACTCT 57.054 37.500 6.67 0.00 0.00 3.24
343 751 1.752498 AGGCATCATAACACGTACGGA 59.248 47.619 21.06 6.15 0.00 4.69
643 1052 3.243535 GGATGTCTGACGCATATGACTGA 60.244 47.826 6.97 4.02 0.00 3.41
653 1062 2.424557 CATATGACTGATCCAGGCTGC 58.575 52.381 9.56 0.00 40.76 5.25
655 1064 0.987081 ATGACTGATCCAGGCTGCCT 60.987 55.000 17.22 17.22 40.76 4.75
672 1081 2.571202 TGCCTGGAAAATGGAAAATCCC 59.429 45.455 0.00 0.00 35.03 3.85
711 1120 3.052082 CAAGCCAGGTGCACCGAG 61.052 66.667 29.68 24.52 44.83 4.63
814 1223 3.060607 GCGTACGAGTAGTGCTAGTAGTC 60.061 52.174 21.65 0.00 36.27 2.59
832 1426 6.436890 AGTAGTCCTATATAAGATCTGCCCC 58.563 44.000 0.00 0.00 0.00 5.80
845 1439 2.203451 GCCCCCTCCTGCATCATG 60.203 66.667 0.00 0.00 0.00 3.07
846 1440 2.760378 GCCCCCTCCTGCATCATGA 61.760 63.158 0.00 0.00 0.00 3.07
881 1475 1.474330 CCACCAACATAAGCCTTCCC 58.526 55.000 0.00 0.00 0.00 3.97
882 1476 1.005924 CCACCAACATAAGCCTTCCCT 59.994 52.381 0.00 0.00 0.00 4.20
883 1477 2.369394 CACCAACATAAGCCTTCCCTC 58.631 52.381 0.00 0.00 0.00 4.30
884 1478 1.992557 ACCAACATAAGCCTTCCCTCA 59.007 47.619 0.00 0.00 0.00 3.86
885 1479 2.582636 ACCAACATAAGCCTTCCCTCAT 59.417 45.455 0.00 0.00 0.00 2.90
968 1566 1.231958 TTTGTTCATCCGACACCCGC 61.232 55.000 0.00 0.00 36.84 6.13
1014 1616 2.930385 CTACCATGGAGGCAGCGGTG 62.930 65.000 21.47 10.98 43.14 4.94
1137 1739 2.621338 GTCATCACCTTCATCTTCGCA 58.379 47.619 0.00 0.00 0.00 5.10
1194 1796 2.559698 TCATTTCACCGTGGACATGT 57.440 45.000 0.00 0.00 0.00 3.21
1456 2058 2.159099 CGTGCCTGACTACACATACCAT 60.159 50.000 0.00 0.00 36.57 3.55
1457 2059 3.678806 CGTGCCTGACTACACATACCATT 60.679 47.826 0.00 0.00 36.57 3.16
1493 2095 0.392060 AGTGCAGCATCGATTCAGCA 60.392 50.000 10.82 10.82 0.00 4.41
1788 2393 4.429212 CCCGCGACGACCATCACA 62.429 66.667 8.23 0.00 0.00 3.58
2085 2690 0.997196 GCACATACGGGAAGTTCGTC 59.003 55.000 0.00 0.00 41.38 4.20
2095 2700 4.212636 ACGGGAAGTTCGTCAATTTGTTAG 59.787 41.667 0.00 0.00 35.87 2.34
2096 2701 4.212636 CGGGAAGTTCGTCAATTTGTTAGT 59.787 41.667 0.00 0.00 0.00 2.24
2097 2702 5.277634 CGGGAAGTTCGTCAATTTGTTAGTT 60.278 40.000 0.00 0.00 0.00 2.24
2098 2703 6.140786 GGGAAGTTCGTCAATTTGTTAGTTC 58.859 40.000 0.00 0.00 0.00 3.01
2270 2893 9.490663 CGTTCAGATTATTATCCTTTTTGTCAC 57.509 33.333 0.00 0.00 0.00 3.67
2345 2972 7.654520 ACAGTAAAAACACTCGTACATACACAT 59.345 33.333 0.00 0.00 0.00 3.21
2375 3002 6.530534 ACTTACTTCTATGAACACATACGCAC 59.469 38.462 0.00 0.00 0.00 5.34
2378 3005 5.520288 ACTTCTATGAACACATACGCACATC 59.480 40.000 0.00 0.00 0.00 3.06
2394 3021 0.103208 CATCCTGTCCCTACGAGCAC 59.897 60.000 0.00 0.00 0.00 4.40
2411 3038 0.248825 CACCTCCGAGAGATTGAGCG 60.249 60.000 0.00 0.00 0.00 5.03
2419 3046 2.468831 GAGAGATTGAGCGGACACATC 58.531 52.381 0.00 0.00 0.00 3.06
2423 3050 3.614092 AGATTGAGCGGACACATCATTT 58.386 40.909 0.00 0.00 0.00 2.32
2430 3057 4.012374 AGCGGACACATCATTTTGAGATT 58.988 39.130 0.00 0.00 0.00 2.40
2433 3060 5.566623 CGGACACATCATTTTGAGATTGAG 58.433 41.667 0.00 0.00 0.00 3.02
2444 3071 1.066858 TGAGATTGAGGAAGTCGCCAC 60.067 52.381 0.00 0.00 0.00 5.01
2454 3081 3.112709 GTCGCCACAGACGCCTTC 61.113 66.667 0.00 0.00 0.00 3.46
2455 3082 4.717629 TCGCCACAGACGCCTTCG 62.718 66.667 0.00 0.00 42.43 3.79
2472 3099 3.181512 CCTTCGTAGTCTACCAGAACGTC 60.182 52.174 4.39 0.00 32.16 4.34
2473 3100 3.325293 TCGTAGTCTACCAGAACGTCT 57.675 47.619 4.39 0.00 32.16 4.18
2474 3101 3.668447 TCGTAGTCTACCAGAACGTCTT 58.332 45.455 4.39 0.00 32.16 3.01
2475 3102 3.434641 TCGTAGTCTACCAGAACGTCTTG 59.565 47.826 4.39 0.00 32.16 3.02
2483 3110 1.502231 CAGAACGTCTTGTCCCACTG 58.498 55.000 0.00 0.00 0.00 3.66
2487 3114 0.249322 ACGTCTTGTCCCACTGAACG 60.249 55.000 0.00 0.00 0.00 3.95
2492 3119 0.393132 TTGTCCCACTGAACGCACAA 60.393 50.000 0.00 0.00 0.00 3.33
2515 3142 5.067954 ACGCCGGAAGCCTAAAATAAATAT 58.932 37.500 5.05 0.00 38.78 1.28
2540 3167 4.093998 AGAAATGCGAGCACTAATGTCAAG 59.906 41.667 0.00 0.00 0.00 3.02
2574 3201 2.227388 GGCATGAATTATGGAGGCGAAG 59.773 50.000 0.00 0.00 37.26 3.79
2580 3209 2.579207 TTATGGAGGCGAAGAGAACG 57.421 50.000 0.00 0.00 0.00 3.95
2581 3210 1.471119 TATGGAGGCGAAGAGAACGT 58.529 50.000 0.00 0.00 0.00 3.99
2586 3215 0.526662 AGGCGAAGAGAACGTGTAGG 59.473 55.000 0.00 0.00 0.00 3.18
2594 3223 2.093973 AGAGAACGTGTAGGCATGGAAG 60.094 50.000 0.00 0.00 35.99 3.46
2603 3232 1.302907 AGGCATGGAAGGATTGAGGT 58.697 50.000 0.00 0.00 0.00 3.85
2606 3235 3.464833 AGGCATGGAAGGATTGAGGTTAT 59.535 43.478 0.00 0.00 0.00 1.89
2607 3236 4.078980 AGGCATGGAAGGATTGAGGTTATT 60.079 41.667 0.00 0.00 0.00 1.40
2608 3237 4.038402 GGCATGGAAGGATTGAGGTTATTG 59.962 45.833 0.00 0.00 0.00 1.90
2609 3238 4.500375 GCATGGAAGGATTGAGGTTATTGC 60.500 45.833 0.00 0.00 0.00 3.56
2610 3239 4.591321 TGGAAGGATTGAGGTTATTGCT 57.409 40.909 0.00 0.00 0.00 3.91
2611 3240 4.526970 TGGAAGGATTGAGGTTATTGCTC 58.473 43.478 0.00 0.00 0.00 4.26
2612 3241 3.561725 GGAAGGATTGAGGTTATTGCTCG 59.438 47.826 0.00 0.00 0.00 5.03
2613 3242 2.565841 AGGATTGAGGTTATTGCTCGC 58.434 47.619 0.00 0.00 0.00 5.03
2614 3243 2.092968 AGGATTGAGGTTATTGCTCGCA 60.093 45.455 0.00 0.00 0.00 5.10
2615 3244 2.032178 GGATTGAGGTTATTGCTCGCAC 59.968 50.000 0.00 0.00 0.00 5.34
2616 3245 1.075542 TTGAGGTTATTGCTCGCACG 58.924 50.000 0.00 0.00 0.00 5.34
2672 3301 2.009774 CACATCGGTCATCCTTTGTCC 58.990 52.381 0.00 0.00 0.00 4.02
2676 3305 0.255890 CGGTCATCCTTTGTCCCCAT 59.744 55.000 0.00 0.00 30.54 4.00
2684 3313 2.109834 TCCTTTGTCCCCATGTGTTCAT 59.890 45.455 0.00 0.00 34.21 2.57
2685 3314 2.493278 CCTTTGTCCCCATGTGTTCATC 59.507 50.000 0.00 0.00 31.15 2.92
2695 3324 5.473039 CCCATGTGTTCATCCTTTTTCTTC 58.527 41.667 0.00 0.00 31.15 2.87
2707 3336 3.194329 CCTTTTTCTTCTTCTCCCCATGC 59.806 47.826 0.00 0.00 0.00 4.06
2732 3361 3.983821 TCCTCTCCCTCCTTACTTTCTC 58.016 50.000 0.00 0.00 0.00 2.87
2746 3375 9.557061 TCCTTACTTTCTCTTTCTTTTTCTACC 57.443 33.333 0.00 0.00 0.00 3.18
2761 3390 3.418684 TCTACCAAAGAACAGGCCTTC 57.581 47.619 0.00 0.00 0.00 3.46
2762 3391 2.979678 TCTACCAAAGAACAGGCCTTCT 59.020 45.455 0.00 0.33 31.41 2.85
2813 3442 0.456221 CGGTCCTACTAGCACAGTGG 59.544 60.000 1.84 0.00 38.24 4.00
2856 3485 0.997363 GGGTAGTAGGTTTGGGGCTT 59.003 55.000 0.00 0.00 0.00 4.35
2860 3489 0.893727 AGTAGGTTTGGGGCTTTGCG 60.894 55.000 0.00 0.00 0.00 4.85
2906 3537 4.453136 CCAATTTGTGGCCTCTGATTTTTG 59.547 41.667 3.32 1.05 41.72 2.44
2914 3545 3.119352 GGCCTCTGATTTTTGTGGATCAC 60.119 47.826 0.00 0.00 34.56 3.06
2936 3567 7.877003 TCACGCAACTTTATTCAAGGATTTAA 58.123 30.769 0.00 0.00 36.72 1.52
2959 3590 6.305272 AGTTAGATGATCACATGGTGTTCT 57.695 37.500 0.00 0.00 36.82 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 5.387279 CCAAACTTACAACGATACGCAATT 58.613 37.500 0.00 0.00 0.00 2.32
22 23 5.813672 TCCATAGCCAAACTTACAACGATAC 59.186 40.000 0.00 0.00 0.00 2.24
27 28 6.745116 AGTTTTCCATAGCCAAACTTACAAC 58.255 36.000 0.00 0.00 37.44 3.32
44 45 5.227805 GGTTCGTGTTCGTTTTAAGTTTTCC 59.772 40.000 0.00 0.00 38.33 3.13
107 108 1.468985 TTTTGTGGGCCATACATCCG 58.531 50.000 10.70 0.00 0.00 4.18
135 136 9.627123 CTGTATCATACTCCCTCCATTTTTAAA 57.373 33.333 0.00 0.00 0.00 1.52
159 161 6.730175 ACAGAGTACATCGTATCTTAAGCTG 58.270 40.000 0.00 0.00 0.00 4.24
171 573 3.935203 AGCATTTCCAACAGAGTACATCG 59.065 43.478 0.00 0.00 0.00 3.84
181 587 3.066621 GTGTTGTCAGAGCATTTCCAACA 59.933 43.478 7.04 7.04 39.65 3.33
653 1062 3.198417 CCAGGGATTTTCCATTTTCCAGG 59.802 47.826 0.00 0.00 38.64 4.45
655 1064 3.837731 GACCAGGGATTTTCCATTTTCCA 59.162 43.478 0.00 0.00 38.64 3.53
662 1071 0.322456 CTGCGACCAGGGATTTTCCA 60.322 55.000 0.00 0.00 38.64 3.53
672 1081 2.126307 CTCACCGTCTGCGACCAG 60.126 66.667 0.00 0.00 41.33 4.00
711 1120 2.209064 TAACTGGAGCGAGGACGTGC 62.209 60.000 0.00 0.00 41.98 5.34
814 1223 3.970640 GGAGGGGGCAGATCTTATATAGG 59.029 52.174 0.00 0.00 0.00 2.57
832 1426 4.401519 AGATTTTGTTCATGATGCAGGAGG 59.598 41.667 0.00 0.00 0.00 4.30
845 1439 3.756434 TGGTGGGATCGAAGATTTTGTTC 59.244 43.478 0.00 0.00 45.12 3.18
846 1440 3.761897 TGGTGGGATCGAAGATTTTGTT 58.238 40.909 0.00 0.00 45.12 2.83
881 1475 6.796426 ACAGCTGAATGAATGAATGAATGAG 58.204 36.000 23.35 0.00 0.00 2.90
882 1476 6.769134 ACAGCTGAATGAATGAATGAATGA 57.231 33.333 23.35 0.00 0.00 2.57
883 1477 7.927048 TCTACAGCTGAATGAATGAATGAATG 58.073 34.615 23.35 0.00 0.00 2.67
884 1478 8.404000 GTTCTACAGCTGAATGAATGAATGAAT 58.596 33.333 23.35 0.00 0.00 2.57
885 1479 7.609146 AGTTCTACAGCTGAATGAATGAATGAA 59.391 33.333 23.35 4.84 0.00 2.57
1137 1739 0.618458 ATGTATGCCACCGACCTGTT 59.382 50.000 0.00 0.00 0.00 3.16
1194 1796 3.000819 AGATGCCGAACACCCCGA 61.001 61.111 0.00 0.00 0.00 5.14
1214 1816 0.388649 ATCAGGAACAGTCGCACGAC 60.389 55.000 15.08 15.08 44.86 4.34
1456 2058 4.282449 TGCACTAGTTAGTTGAGCAGGTAA 59.718 41.667 0.00 0.00 33.46 2.85
1457 2059 3.830178 TGCACTAGTTAGTTGAGCAGGTA 59.170 43.478 0.00 0.00 33.46 3.08
1533 2135 8.834465 ACGAATTGATGATTACTACTACTACGT 58.166 33.333 0.00 0.00 0.00 3.57
1534 2136 9.661187 AACGAATTGATGATTACTACTACTACG 57.339 33.333 0.00 0.00 0.00 3.51
1608 2213 4.379243 ACCTTCTCGCGCACCAGG 62.379 66.667 8.75 9.35 0.00 4.45
2029 2634 4.673298 TAGCGCCACACCCACACG 62.673 66.667 2.29 0.00 0.00 4.49
2085 2690 5.583495 TCAACCCAACGAACTAACAAATTG 58.417 37.500 0.00 0.00 0.00 2.32
2095 2700 1.865340 GTCAGTCTCAACCCAACGAAC 59.135 52.381 0.00 0.00 0.00 3.95
2096 2701 1.483004 TGTCAGTCTCAACCCAACGAA 59.517 47.619 0.00 0.00 0.00 3.85
2097 2702 1.116308 TGTCAGTCTCAACCCAACGA 58.884 50.000 0.00 0.00 0.00 3.85
2098 2703 1.800586 CATGTCAGTCTCAACCCAACG 59.199 52.381 0.00 0.00 0.00 4.10
2241 2864 9.391006 ACAAAAAGGATAATAATCTGAACGCTA 57.609 29.630 0.00 0.00 32.29 4.26
2270 2893 5.702349 AGTTTGGAAGAAGCAATGAGAAG 57.298 39.130 0.00 0.00 0.00 2.85
2276 2899 4.280929 GGGTACAAGTTTGGAAGAAGCAAT 59.719 41.667 0.00 0.00 0.00 3.56
2320 2947 7.397512 TGTGTATGTACGAGTGTTTTTACTG 57.602 36.000 0.00 0.00 0.00 2.74
2330 2957 9.334947 AGTAAGTGTATATGTGTATGTACGAGT 57.665 33.333 0.00 0.00 34.63 4.18
2357 2984 4.099419 AGGATGTGCGTATGTGTTCATAGA 59.901 41.667 0.00 0.00 37.23 1.98
2375 3002 0.103208 GTGCTCGTAGGGACAGGATG 59.897 60.000 0.00 0.00 46.00 3.51
2378 3005 1.668101 GAGGTGCTCGTAGGGACAGG 61.668 65.000 0.00 0.00 0.00 4.00
2394 3021 1.103987 TCCGCTCAATCTCTCGGAGG 61.104 60.000 4.96 0.00 44.99 4.30
2411 3038 5.649395 TCCTCAATCTCAAAATGATGTGTCC 59.351 40.000 0.00 0.00 0.00 4.02
2419 3046 4.437930 GGCGACTTCCTCAATCTCAAAATG 60.438 45.833 0.00 0.00 0.00 2.32
2423 3050 1.623311 TGGCGACTTCCTCAATCTCAA 59.377 47.619 0.00 0.00 0.00 3.02
2430 3057 1.666011 GTCTGTGGCGACTTCCTCA 59.334 57.895 0.00 0.00 0.00 3.86
2433 3060 3.112709 GCGTCTGTGGCGACTTCC 61.113 66.667 0.00 0.00 0.00 3.46
2454 3081 3.188048 ACAAGACGTTCTGGTAGACTACG 59.812 47.826 6.54 0.00 38.14 3.51
2455 3082 4.379290 GGACAAGACGTTCTGGTAGACTAC 60.379 50.000 3.86 3.86 28.89 2.73
2464 3091 1.068588 TCAGTGGGACAAGACGTTCTG 59.931 52.381 0.00 0.00 44.16 3.02
2465 3092 1.410004 TCAGTGGGACAAGACGTTCT 58.590 50.000 0.00 0.00 44.16 3.01
2472 3099 0.813610 TGTGCGTTCAGTGGGACAAG 60.814 55.000 0.00 0.00 44.16 3.16
2473 3100 0.393132 TTGTGCGTTCAGTGGGACAA 60.393 50.000 1.76 1.76 44.16 3.18
2474 3101 1.092921 GTTGTGCGTTCAGTGGGACA 61.093 55.000 0.00 0.00 32.44 4.02
2475 3102 1.647084 GTTGTGCGTTCAGTGGGAC 59.353 57.895 0.00 0.00 0.00 4.46
2492 3119 2.406596 TTATTTTAGGCTTCCGGCGT 57.593 45.000 6.01 0.00 42.94 5.68
2515 3142 5.175127 TGACATTAGTGCTCGCATTTCTTA 58.825 37.500 0.00 0.00 0.00 2.10
2530 3157 8.035394 TGCCTTTAGTTCTAGACTTGACATTAG 58.965 37.037 0.00 0.00 39.86 1.73
2540 3167 8.778358 CCATAATTCATGCCTTTAGTTCTAGAC 58.222 37.037 0.00 0.00 32.84 2.59
2574 3201 2.271800 CTTCCATGCCTACACGTTCTC 58.728 52.381 0.00 0.00 0.00 2.87
2580 3209 3.209410 CTCAATCCTTCCATGCCTACAC 58.791 50.000 0.00 0.00 0.00 2.90
2581 3210 2.173356 CCTCAATCCTTCCATGCCTACA 59.827 50.000 0.00 0.00 0.00 2.74
2586 3215 4.500375 GCAATAACCTCAATCCTTCCATGC 60.500 45.833 0.00 0.00 0.00 4.06
2594 3223 2.032178 GTGCGAGCAATAACCTCAATCC 59.968 50.000 0.00 0.00 0.00 3.01
2612 3241 0.802222 TCATTAGAGCGAGCACGTGC 60.802 55.000 32.79 32.79 41.98 5.34
2613 3242 1.520174 CATCATTAGAGCGAGCACGTG 59.480 52.381 12.28 12.28 41.98 4.49
2614 3243 1.536922 CCATCATTAGAGCGAGCACGT 60.537 52.381 5.23 0.00 41.98 4.49
2615 3244 1.135046 CCATCATTAGAGCGAGCACG 58.865 55.000 0.00 0.00 42.93 5.34
2616 3245 0.864455 GCCATCATTAGAGCGAGCAC 59.136 55.000 0.00 0.00 0.00 4.40
2672 3301 5.244626 AGAAGAAAAAGGATGAACACATGGG 59.755 40.000 0.00 0.00 0.00 4.00
2676 3305 6.263168 GGAGAAGAAGAAAAAGGATGAACACA 59.737 38.462 0.00 0.00 0.00 3.72
2684 3313 4.666512 CATGGGGAGAAGAAGAAAAAGGA 58.333 43.478 0.00 0.00 0.00 3.36
2685 3314 3.194329 GCATGGGGAGAAGAAGAAAAAGG 59.806 47.826 0.00 0.00 0.00 3.11
2695 3324 2.025510 AGAGGAAAAGCATGGGGAGAAG 60.026 50.000 0.00 0.00 0.00 2.85
2707 3336 5.249622 AGAAAGTAAGGAGGGAGAGGAAAAG 59.750 44.000 0.00 0.00 0.00 2.27
2746 3375 1.613836 AGCAGAAGGCCTGTTCTTTG 58.386 50.000 5.69 0.00 46.50 2.77
2761 3390 2.216898 GCCAGGTGAAGCTTATAGCAG 58.783 52.381 0.00 0.00 45.56 4.24
2762 3391 1.473257 CGCCAGGTGAAGCTTATAGCA 60.473 52.381 0.00 0.00 45.56 3.49
2790 3419 1.227002 GTGCTAGTAGGACCGCTGC 60.227 63.158 10.56 0.00 29.54 5.25
2798 3427 1.759445 AGATGCCACTGTGCTAGTAGG 59.241 52.381 1.29 0.00 37.60 3.18
2813 3442 2.409948 AGCCAACTAGGTTCAGATGC 57.590 50.000 0.00 0.00 40.61 3.91
2906 3537 4.678509 TGAATAAAGTTGCGTGATCCAC 57.321 40.909 0.00 0.00 0.00 4.02
2914 3545 8.742554 AACTTAAATCCTTGAATAAAGTTGCG 57.257 30.769 0.00 0.00 35.14 4.85
2936 3567 6.305272 AGAACACCATGTGATCATCTAACT 57.695 37.500 0.00 0.00 37.72 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.