>input_sequence_64457
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-ATGGAGGCAGCGGTGGCTCGCGCCGACACAGCAGCATTCTTCTCGGGCCAGGAGGACGCGGCCGAGGGGAGCATGTCCA
GCCTGCCGGCTCGGGTCGCCGGCTCGATCGTCCGCGGCGTCATCACCTTCATCTTCGCAACAGGTCGGTGGCATACATGC
ATGTTTCTTCTTGTTTTCATTTCACCGTGGACATGTCGGGGTGTTCGGCATCTCCGTCGTGCGACTGTTCCTGATCGACT
TGGTGTTGTTGCAGTGGGCACGATTCTGGGAGCCATCACGGGCGGGATGATCGGGCTGGCGACGGAGAGCGGCCTCGTCC
GCGGCGCGGGCATCGGCGCCATCTCCGGCGCCGTGGTGGCCATGGAGGTTGTCGACAGGTCCATGGCCATGTGGCGCTCC
GACGAGTGCGGCATCTGGAGCGTCCTATACGTGGTACGTGCCTGACTACACATACCATTACCTGCTCAACTAACTAGTGC
AGCATCGATTCAGCAGTTCTAATTATCATCATTTTATTCACCTAATTATTTAGTACGTAGT---AGTAGTAATCATCAAT
TCGTTGTTAATTCATTTCAGCTTGACGTGATCTGGAGCCTCCTGACGGGCCGCCTGGTGCGCGAGAAGGTGGACCCCGCA
GTGCAGAACGCCGTCGACAGCCAGATGAACGCCGCGGGCGACGGGTTCAGCGACGGCCCGCCGACGCTCTCCGAGATGTT
TGACATGGGCTCCGCCTCCTTCAAAGGCATGGCTGCAGACGCCATCGCCGAGCTCCCCGCGACGACCATCACAGAGCAGC
AGGCCGCCGTGCAGGACGGCGGCTGCTCCGTGTGCCTCCAGGAGTTCGAGGCCGGCGAGGCGGCGCGGAGCCTGCCGGAG
TGCCGCCACACGTTCCACATGTCGTGCATAGACGGGTGGCTGTGCCGGCATGCGTCGTGCCCGCTGTGCCGCCGCGCCGT
CTAG----------------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G273100
TGAATAAATCAACTATAATTGCGTATCGTTGTAAGTTTGGCTATGGAAAACTTAAAACGAACACGAACCTGTGCGGTATG
TGTGAAACTAAGTTTTCAATCGCGAAGCGGATGTATGGCCCACAAAATGCTTATATTTA-AAAATGGAGGGAGTATGATA
CAGCTTAAGA----------------------------------------------------------------------
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----------TACG----ATGTACTCTGTTGGAAATGCTCTGAC--AACACATTTTCATTTCCGAAAGTGGGCTCCGCGC
ATCCGTCGAGAAGAAAAAAGCAAACCCATATTTCTCCGTCCCTCTCCTGGTCCTTTTGTCGCCTCTATGGAAAAATCTTA
GCTGACGGGTAGGCATCATAACACGTACGGACGCACCCGTCACGCAGTCATGGAGTGAGGAGAAGTCTGGGAATTCGCTT
GGAAGCAGCTGTTGCGTTGAGTAGTGCCCGAAGAGGGAAGCTTAGCCGTTAAGAGATGGAGCGGGTGAAGGCATTGGCAA
CTGGCGCGTTGCCATCACCCGCGTGCCGGATGGGCTCGGTCCGTTAGCATTTATGTATGATTGCCTTGTTTCCCGCCTCT
CTCTTTTCTCTTCGCTGGACTCGTTCCG-CACCTAGGCTGCTACGCCAAGCTACTTCGCGCGCCACGTGGGATGTCTGAC
GCATATGACTGATCCAGGCTGCCTGGAAAATGGAAAATCCCTGGTCGCAGACGGTGAGCTGGCAAGCCAGGTGCACCGAG
CACGTCCTCGCTCCAGTTAGCTAGCTAATCCATTTTGGGGCTAGCCACGAGTCTTCGGCTAATTAATCCACGCGCTGCGT
GCGTACGAGTAGTGCTAGTAGTC---------------------------------------------------------
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------------------------------------------------CTATATAAGATCTGCCCCCTCCTGCATCATGA
ACAAAATCTTCGATCCCACCAACATAAGCCTTCCCTCATTCATTCATTCATTCAGCTGTAGAACTCTGATCATCGACCAG
CAGCGGGATTCTCCTCGTCTGATTTGTTCA----TCCGACACCCGCTCGATCCGCA----GCAGCAGGTGATCCGGCTAC
CATGGAGGCAGCGGTGGCTCGCGCCGACACAGCAGCATTCTTCTCGGGCCAGGAGGACGCGGCCGAGGGGAGCATGTCCA
GCCTGCCGGCTCGGGTCGCCGGCTCGATCGTCCGCGGCGTCATCACCTTCATCTTCGCAACAGGTCGGTGGCATACATGC
ATGTTTCTTCTTGTTTTCATTTCACCGTGGACATGTCGGGGTGTTCGGCATCTCCGTCGTGCGACTGTTCCTGATCGACT
TGGTGTTGTTGCAGTGGGCACGATTCTGGGAGCCATCACGGGCGGGATGATCGGGCTGGCGACGGAGAGCGGCCTCGTCC
GCGGCGCGGGCATCGGCGCCATCTCCGGCGCCGTGGTGGCCATGGAGGTTGTCGACAGGTCCATGGCCATGTGGCGCTCC
GACGAGTGCGGCATCTGGAGCGTCCTATACGTGGTACGTGCCTGACTACACATACCATTACCTGCTCAACTAACTAGTGC
AGCATCGATTCAGCAGTTCTAATTATCATCATTTTATTCACCTAATTATTTAGTACGTAGT---AGTAGTAATCATCAAT
TCGTTGTTAATTCATTTCAGCTTGACGTGATCTGGAGCCTCCTGACGGGCCGCCTGGTGCGCGAGAAGGTGGACCCCGCA
GTGCAGAACGCCGTCGACAGCCAGATGAACGCCGCGGGCGACGGGTTCAGCGACGGCCCGCCGACGCTCTCCGAGATGTT
TGACATGGGCTCCGCCTCCTTCAAAGGCATGGCTGCAGACGCCATCGCCGAGCTCCCCGCGACGACCATCACAGAGCAGC
AGGCCGCCGTGCAGGACGGCGGCTGCTCCGTGTGCCTCCAGGAGTTCGAGGCCGGCGAGGCGGCGCGGAGCCTGCCGGAG
TGCCGCCACACGTTCCACATGTCGTGCATAGACGGGTGGCTGTGCCGGCATGCGTCGTGCCCGCTGTGCCGCCGCGCCGT
CTAGGCTTGGCGTGCCCGGCTCGTTAGGATCGATGTGTGCATAGCCAGCGTATATACACACGTGTTACGCGCGCGTGTGG
GTGTGGCGCTAGCACGTACGGCACGCGCACGCACATACGGGAAGTTCGTCAATTTGTTAGTTC-------------GTTG
GGT----TGAGACTGACATGACATGACACTTATGCCGACAAGTTCTTTCGTGACTTGTTCGTTGCCTTCATTTCTGCGGA
-ATTATGATTGTATTGCTATACCACACGCGCGGCTGATTGTGAATATCTGTATAGAAAATCATTAGCGTTCAGATTATTA
TCCTTTTTGTCACTTCTCATTGCTTCTTC---CAAACTTGTACCCTCCTCTTATATTTTTT-AACACAGTAAAAACACTC
GTACATACACATATACACTTACTTCTATGAACACATACGCACATCCTGTCCCTACGAGCACCTCCGAGAGATTGAGCGGA
CACATCATTTTGAGATTGAGGAAGTCGCCACAGACGCCTTCGTAGTCTACCAGAACGTCTTGTCCCACTGAACGCACAAC
GCCGGAAGCCTAAAATAAATATAAGAAATGCGAGCACTAATGTCAAGTCTAGAACTAAAGGCATGAATTATGGAGGCGAA
G--AGAACGTGTAGGCATGGAAGGATTGAGGTTATTGCTCGCACGTGCTCGCTCTAATGATGGCTATGGTGGTGCTACCT
CACATCGGTCATCCTTTGTCCCCATGTGTTCATCCTTTTTCTTCTTCTCCCCATGCTTTTCCTCTCCCTCCTTACTTTCT
CTTTCTTTTTCTACCAAAGAACAGGCCTTCTGCTATAAGCTTCACCTGGCGCATGCAGGCAGCGGTCCTACTAGCACAGT
GGCATCTGAACCTAGTTGGCTTATGGGGTAGTAGGTTTGGGGCTTTGCGTTGGCCATGCCCCAAGCTCCTTCCAATTTGT
GGCCTCTGA--TTTTTGTGGATCACGCAACTTTATTCAAGGATTTAAGTTAGATGATCACATGGTGTTCT
>chr7B_1
TGAATAAATCAACTATGATTGCCTATCATTGTAAGTTTGGCTATAGAAAACTTAAAACGAACACGAACCTGTGCGGTATG
TGTGAAACCAAGTTTTCGATCGCGAAGTGGATGTATGGCCAACAAAATGCTTATAGTTAGAAAATGGAGGGAGTATGAGG
AAAATATGAAGGAGAACCTGGGTACCAGCGCACCCTATATGCAAAAAAAAATTAGTAATTCAAAAAAGTTCAAAAAATTT
CAATTTTTTTAGTATTAAACATGATCAAGTATTGTAGTCATATAAAAAGATTCGTCAGAGAATGACTTTCGTTGCATCCT
GGGTCGAAGATTCAGCAAAAAACGCTATATACAAGTACTATACAAGCTATATTGTCGTCATAAACTTGTCTTTTTTGCTG
TGAAGTCAATATGAATCATTTCTTGTCTAAACTTTTTATACGAATACAATACTTGATCATGTTTGATTCCAAAAAAAATT
AGAATTTTTTGTACTTTCTGGAATTACTAATTTTTTTTTTCATATATAGGGTGCACGGGTACCAGTGAGCACCAAGTCCG
CGTCCGGGAGTATG----ATATACTCCGTTGGAAATGCTCTGTCAAAACACATTTTCATTTCCGAAAATGGGCTCCGCGC
ATCCGTTGAGAAGGAAAAAGCGAACCCATATTTCTCCGTCCCTCTCCTGGTCTTTTTGTCGCCTCCATGGAAAAATCTTA
GCTGATGGGTAGGCATCATAACACGTACGGCCGCACCCGTCACGCAGTCATGGAGTGAGGAGAAGTCTGGGAATTCGCTT
GGAAGCAGCTGTTGCGTTGAGTAGTGCCCGAAGAGGGAAGCTTAGCCGTTAAGAGATGGAGCGGGTGAAGGCATTGGCAA
CTGGCGCGTTGCCATCATCCGCGTGCCGGATGGGCTCGGTCCGTTAGCATTTATGGATGATTGCCTTGTTTCCCGCCTCT
CTTTTTTCTCTTCGCTGGACACGTTCCGTCACCTAGGCTGCTACGCCAAGCTACTTCGCGCGCCACGTGGGATGTCTGAC
GCATATGAATGGTCCAGGCTGTCC-GAAAACGAAAAATCCGTGGTCGCAGACGGTGAGCTGGCAAGCCAGGTGCACCCAA
CATGTCCTCGCTCCAGTTAGCTAGCTAATCCATTTTGGGGCTAGCCACGAGTCCTCGGCCAATTAATCAACGCGCTGCGT
GCGTACGAGTAGTACTAGTA------------------------------------------------------------
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------------------------------------------------CTATATAAGATCTGGCC-CTCCTGCATCATCT
ACAAAATCCTCGATCTCACCAACATAAGCCTTCC-----TCATTCATTCATTCAGCTGTACAACTCTGATCATCGACCAG
CAGCGGGATTCTCCTCGTCTGATTTGTTCA----TCCGACACCCGATCGATCCGCA----GCAGCAGGTGATCCGGCTAC
AATGGAGGCAGCGGTAGCTCGCGCCGACACAGCAGCATTCTTCTCGGGCCAGGAGGACGCGGCCGGGGGGAGCATATCCA
GACTACCGGCTCGGGTCGCCGGCTCGATCGTCCGCGGCGTGATCACCTTCATCTTCGCCACAGGTCGGTGGCATACATGC
ATGTTTTTTCTTGTTTTCATTCCACCGTGGACATGGCGGGGTGTTCGGCATCTCCATCGTGCGACTGTTCCTGATCGACT
TGGTGTTGTTGCAGTGGGCACGATTCTGGGAGCCATCACGGGCGGGATGATCGGGCTGGCGACGGAGAGCGGTCTCGTCC
GCGGCGCGGGCATCGGCGCCATCTCCGGCGCCGTGGTGGCCATGGAGGTTGTCGACAGGTCCATGGCCATGTGGCGCTCC
GACGAGTGCGGCATCTGGAGCGTCCTATACGTGGTACGTGCCTGA--------ACCAA-ACCTGCTCAACTAACTAGCGC
AGCATCGATTCAGCGGTTCTGATTATCATCATTGTATTCACCTAATTATT-------TAGT---AGTAGTAATCATCAAT
TCGTTGTTAATTCATTTCAGCTTGACGTGATCTGGAGCCTCCTGACGGGTCGTCTGGTGCGCGAGAAGGTGGACCCCGCA
GTGCAGAACGCGGTCGACAGCCAGATGAACGCCGCGGGCGACGGGTTCAGCGACAGCCCGCCGACGCTCTCCGAGATGTT
TGACATGGGCTCCGCCTCCTTCAAAGGCATGGCTGCAGACGCCATCGCCGAGCTCCCCGCGACGACGATCACCGAGCAGC
AAGCCGCCGTGCAGGACGGGGGCTGCTCCGTGTGCCTCCAGGAGTTCGAGGCCGGCGAGGCGGCGCGGAGCCTGCCGGAG
TGCCGCCACACGTTCCACATGTCGTGCATAGACGGGTGGCTTTGCCGGCATGCGTCGTGCCCGCTGTGCCGCCGCGCCGT
CTAGGCCTGGCGTGCCCGGCTCGTTAGGATCGATGTGTGCATAGCCAGCGTATATACACACGTGTTACGCGCGTGTGTGA
GTGTGGCGCTAGCACGTACGGCACGCGCACGCACATACGGGAAGTTCGTTAATTTGTTATACGTAGTTAGCTACTAGTTG
GGT----TGAGACTGACATGACATGACACTTGTGCCGACAAGTTCTTTCGTGACTTGTTCGTTGCCTTCATTTCTGCGGA
AATTATGATTGTATTGCTACACCACACGCGCGGCTGGTTGCGAATATCTATACAGAAAATCATCAGCGTTTAGATTATTA
CCCTTTTTGTCATTTCTCGTTGCTTCTTC---CCAAATCGTATGTACTCCTGCTC-------------------------
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>chr7A_153
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-------------------------------------------------------------------------TATGATA
TAGCTTAAGA----------------------------------------------------------------------
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----------TATCATGTACGTACTCCATTGGAAATGCCCTGAGAAAACACATTTTCTATTCCGAAAGTGGGCTCCGCGC
ATCCGTGGAGAAGAAAAAA-CAAACCCACATTTCTCCGTCCCTCTCTTGGTCCTTTTGTCGCCTCTATGGAAAAATCTTA
GCTGACGGGTAGGCATCATAACACGTACGGCGGCACCCGTCACGCGGTCATGGAGTGAGGAGAAGTCTGGGAATTCGCTT
GGAGGCAGCTGTTGCGTTGAGTAGTGCCCGAAGAGGGAAGCTTAGCCGTTAAGAGATGGAGCGGGTGAAGGCATCGGCAA
CTGGCGCGTTGCCATCACCCGCGTGCCGGATGGGCTCGGTCCGTTAGCATTTATGTATGATTTCCTTGTTTCCCGCCTCT
CTCTTTTCTCTCCGGTGGACTCGTTCCGCCACCTAGGCTGCTACGCCAAGCTACTTCGCGCGCCATGTGGGATGTCTGAC
GCATATGACTGGTCCAGGCTGTCCGGAAAACGGAAAATCCGTGGCTGCAGACGGTGAGCTGGCAAGCCAGGTGCACCCAA
CACGTCCTCCC-CCAGTTAGCTAGCTAATCCATTTTGGGGCTAGCCACGAGTCTTCGGCCAATTAATCAACGCGCTGCGT
GCGTACGAGTAGTGCTAGTAGTAGTACTATATAAGATCGGGAGTACCTACAACTCATCTAGATGAGATATAATTTGGTCT
CATTCATCTAGAAAATAAAAACAGATACAACCCACATTAGCACACACGCATCTTATAGCATCACATCTAATGGCTATAAA
AGATGAATGGAACCAAATTATGTCTCATCTAGATGAGTTCTAGTAAAACTATATAAGATCTGCCCACTCCTGCATCATCT
ACAAAATCTTCGATCCCACCAACATAAGCCTTCC-----TCATTCGTTCATTCAGCTGTAGAACTCTGATCATCGACCAG
AACCAATACTCTCCTCATCTGATTTCATTTGTTGTCCGCCACCCGATTGATCAGTAGCGCGCAGCGGGTGATCCGGCAAC
CATGGAGGCAGCGGTAGCTCGCGCCGACACAGCAGCATTATTCTCGGGCCAGGAGGACGCCGCCGAGGGGAGCATGTCCA
GCCTGCCGGCTCGGGTCGCTGGCTCGATCGTCCGCGGCGTCATCACCTTCATCTTCGCCACAGGTCGGTGGCATACATGC
ATGTTTCTTCTTGTTTTCATTTCACCA--GACATGGCGGGGTGTTCGGCATCTCCATCGTGCGACTGTTCCTGATCGACT
TGGTGTTGTTGCAGTGGGCACGATTCTGGGAGCCATCACGGGCGGCACGATCGGGCTGGCGACGGAGAGCGGCCTCGTCC
GCGGCGCGGGCATCGGCGCCATCTCCGGCGCCGTGGTGGCCATGGAGGTTGTCGACAGGTCCATGGCCATGTGGCGCTCC
GACGAGTGCGGCATCTGGAGCGTCCTATACGTGGTACGTGCCTGACTACACATACCAA-ACCTGCGCAACTGACTAGTGC
GGCATCGATTCAGCGGTTCTAATTATCATCATTGTATTCACCTAATTGTT-------TAGTACCAGTAGTAATCATCAAT
TCGTTGTTAATTCATTTCAGCTTGACGTGATCTGGAGCCTCCTGACGGGCCGTCTGGTGCGCGAGAAGGTGGACCCCGCA
GTGCAGAACGCCGTCGACAGCCAGATGAACGCCGCGGGCGACGGGTTCAGCGACGGCCCGCCGACGCTCTCCGAGATGTT
TGACATGGGCTCCGCCTCCTTCAAAGGCATGGCCGCAGACGCCATCGCCGAGCTCCCCGCGACGACCATCACCGAGCAGC
AGGCCGCCGTGCAGGACGGCGGCTGCTCCGTGTGCCTCCAGGAGTTCGAGGCCGGCGAGGCGGCACGGAGCCTGCCGGAG
TGCCGCCACACGTTCCACATGTCGTGCATAGACGGGTGGCTGTGCCGGCATGCGTCGTGCCCGCTGTGCCGCCGCGCCGT
CTAGGCCTGGCGTACCCGGCTCGTTAGGATCGATGTGTGCATAGCCAGCGTATATACACACGTGTTACGCGCGTGTGTGG
GTGTGGCGCTAGCACGTACGGCACGCGCACGCACATACGGGAAGTTCGTTAATTTGTTATACGTAGTTAGCTAGTTGGGT
TGAAGGCTGAGACTGACATGACATGACACTTATGCCGACAAGTTCTTTCGTGACTTGTTCGTTGCCTTCATTTCTGCGGA
AATGATGATTGTATTGCTATACCACACGCGCTGCTGGTTGTGAATATATGTATAGAAAATCATCAGCATTCAGATTATTA
TCCTTTTTGTCATTTCTTGTTGCTTCTTCTTCCAAACTTGTGCCCTCCTCTTATATTTTTTGAACATAGTAAAAACGCTC
GTACATACACACATACACTTACTCCTATGAACACACATGCATATTCTGTCCCTACGAGCATCTCCGAGAGATTGAGCCGA
CACATTATTCTGAGATCGACGAAGTCGCCATAGACGCCTTTATAGTCTACGGGAACGTTCCATCCCACTAAACACACATC
GCCGAAAGCCTAAAATAAATACAAGAAATGCGAGCAGTAATGTCAAATCTAGAACTAAAGGCATGAATTATGGAGGCGAA
AAAAGAACACGTAGACATGGAAAGATTGAGGCTA-----------TGCTCGCTCTAATGATGGCTATGGTGGTGCTACCT
CACATCGGTCATCCTTTGTCTCCACGTGTTCACTCTTTTTCTTTTTCTCCCCATGTTTTTCCTCTCCCTCCTTACTTTCT
TTTTCTTTTTCTACGAAAGAACAGGCCTTTCGCTATAAGCTTCACCTGGCGCATGCAGACAGCGGTTCTACTAGCACAGT
GTCATCTGAACCTAGTTGGCTTATGGGGTAGTAGGTTTGGGGCTATGCTTTGGCCATGCCCCAAGCTCCTTCCAATTTGT
GGCCTCTGATTTTTTTTTGGATCATGCAACTTTATTCAAGGATTTAGGTTAGCTGATCACATGGTGTTC-
>SNPs
----------------S-----S----S----------------S-----------------------------------
--------S--------S---------S------------S--------------S------------------------
S-------------------------------------------------------------------------------
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------------S-------------S-----------------------------------------------------
------S-------------------------------------------------------------------------
------------------------------S-------------------------------------------------
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-----------S---------S-S------S---------S------------------------------------S-S
-----------------------------------------------------------S--------S-----------
----------------------S---------------------------------------------------------
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-----------------------------------------------------------------S------------SS
----------------------------------SSSSS-----------------------------------------
---------------------------------------------S----------------------------------
---------------S----------------------------------------------------------------
----------------------------------------------------------S---------------------
-----------------------------------S-------------------S------------------------
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---------------------------------------------------------SS---------------------
--------------S------------------S----------------SSSSSSS-----------------------
----------------------------------------------------S---------------------------
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------------------------------------------------------------------------S-------
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------S------------------------------------------------------------------S------
-------------------------------------------------S---------SSSS-----------------
--------------------------------------------------------------------------------
------------------------------------S--------------------------S----------------
------------S-----S-----------------------------------------------S---------S---
-----------S-----------S-----------S-S---S--S---------------S----------------S--
-----S---S------S--S----------S---------SS--------SS------SSSS-------S---S----S-
----S----------------S--------------S---------S---------------------------------
S-------SS----S-------S--------S--SSSSSSSSSSS-----------------------------------
--------------------S---S-------SS---------S-----------S------------------------
S-------------S--------------SS---------------------------S-------S-------------
-S------------------------------------------S---S-------------------------------
----------------S-------S---------------------S-----S----------------S
>forward_1064
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----ATGACTGATCCAGGCTGCCT--------------------------------------------------------
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>reverse_3002
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-----------------------------------------CATCCTGTCCCTACGAGCAC-------------------
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