Multiple sequence alignment - TraesCS7D01G267800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G267800 chr7D 100.000 2520 0 0 1 2520 251372980 251375499 0.000000e+00 4654.0
1 TraesCS7D01G267800 chr7D 90.476 84 8 0 2203 2286 77075035 77074952 7.370000e-21 111.0
2 TraesCS7D01G267800 chr7B 95.581 2082 55 6 449 2520 228362157 228364211 0.000000e+00 3301.0
3 TraesCS7D01G267800 chr7B 100.000 28 0 0 423 450 526872431 526872458 5.000000e-03 52.8
4 TraesCS7D01G267800 chr7B 100.000 28 0 0 423 450 526880390 526880417 5.000000e-03 52.8
5 TraesCS7D01G267800 chr7A 95.261 2089 54 11 451 2520 270044250 270042188 0.000000e+00 3267.0
6 TraesCS7D01G267800 chr5A 81.481 270 50 0 1485 1754 505612465 505612734 3.260000e-54 222.0
7 TraesCS7D01G267800 chr5A 81.413 269 34 13 1875 2137 505612731 505612989 3.290000e-49 206.0
8 TraesCS7D01G267800 chr5A 94.048 84 5 0 2203 2286 505612987 505613070 7.320000e-26 128.0
9 TraesCS7D01G267800 chr5D 80.741 270 52 0 1485 1754 400280744 400281013 7.060000e-51 211.0
10 TraesCS7D01G267800 chr5D 80.784 255 33 12 1889 2137 400281024 400281268 4.280000e-43 185.0
11 TraesCS7D01G267800 chr5B 80.741 270 52 0 1485 1754 480293998 480294267 7.060000e-51 211.0
12 TraesCS7D01G267800 chr5B 81.176 255 32 14 1889 2137 480294278 480294522 9.200000e-45 191.0
13 TraesCS7D01G267800 chr5B 94.048 84 5 0 2203 2286 480294520 480294603 7.320000e-26 128.0
14 TraesCS7D01G267800 chr3D 84.541 207 23 6 1887 2093 457019243 457019046 1.980000e-46 196.0
15 TraesCS7D01G267800 chr3D 80.392 255 34 14 1889 2137 554063903 554063659 1.990000e-41 180.0
16 TraesCS7D01G267800 chr3D 90.476 84 8 0 2203 2286 554063661 554063578 7.370000e-21 111.0
17 TraesCS7D01G267800 chr3B 84.058 207 24 6 1887 2093 603602128 603601931 9.200000e-45 191.0
18 TraesCS7D01G267800 chr3B 88.095 84 10 0 2203 2286 464613294 464613377 1.600000e-17 100.0
19 TraesCS7D01G267800 chr3A 84.058 207 24 6 1887 2093 599861530 599861333 9.200000e-45 191.0
20 TraesCS7D01G267800 chr4B 72.053 755 160 37 908 1627 22273407 22274145 7.160000e-41 178.0
21 TraesCS7D01G267800 chr4D 76.645 304 63 6 1328 1627 12411054 12410755 7.210000e-36 161.0
22 TraesCS7D01G267800 chr4A 75.987 304 65 7 1328 1627 590278261 590278560 1.560000e-32 150.0
23 TraesCS7D01G267800 chr2A 89.286 84 9 0 2203 2286 66913405 66913488 3.430000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G267800 chr7D 251372980 251375499 2519 False 4654 4654 100.000 1 2520 1 chr7D.!!$F1 2519
1 TraesCS7D01G267800 chr7B 228362157 228364211 2054 False 3301 3301 95.581 449 2520 1 chr7B.!!$F1 2071
2 TraesCS7D01G267800 chr7A 270042188 270044250 2062 True 3267 3267 95.261 451 2520 1 chr7A.!!$R1 2069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.023732 CGCTTACGATGAGTTGCACG 59.976 55.0 0.0 0.0 43.93 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 1822 0.793861 GACGTTCTTGCGCACCAATA 59.206 50.0 11.12 0.0 34.88 1.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.877178 CCTCTTTGACTAGTGATTTTACAGTAT 57.123 33.333 0.00 0.00 0.00 2.12
49 50 3.804601 TCGCTTACGATGAGTTGCA 57.195 47.368 0.00 0.00 45.12 4.08
50 51 1.346365 TCGCTTACGATGAGTTGCAC 58.654 50.000 0.00 0.00 45.12 4.57
51 52 0.023732 CGCTTACGATGAGTTGCACG 59.976 55.000 0.00 0.00 43.93 5.34
52 53 0.247301 GCTTACGATGAGTTGCACGC 60.247 55.000 0.00 0.00 33.43 5.34
53 54 0.370273 CTTACGATGAGTTGCACGCC 59.630 55.000 0.00 0.00 0.00 5.68
54 55 1.017177 TTACGATGAGTTGCACGCCC 61.017 55.000 0.00 0.00 0.00 6.13
55 56 1.884075 TACGATGAGTTGCACGCCCT 61.884 55.000 0.00 0.00 0.00 5.19
56 57 2.034879 CGATGAGTTGCACGCCCTT 61.035 57.895 0.00 0.00 0.00 3.95
57 58 1.503542 GATGAGTTGCACGCCCTTG 59.496 57.895 0.00 0.00 0.00 3.61
58 59 1.926511 GATGAGTTGCACGCCCTTGG 61.927 60.000 0.00 0.00 0.00 3.61
59 60 2.281484 GAGTTGCACGCCCTTGGA 60.281 61.111 0.00 0.00 0.00 3.53
60 61 1.896660 GAGTTGCACGCCCTTGGAA 60.897 57.895 0.00 0.00 0.00 3.53
61 62 1.452145 GAGTTGCACGCCCTTGGAAA 61.452 55.000 0.00 0.00 0.00 3.13
62 63 0.827507 AGTTGCACGCCCTTGGAAAT 60.828 50.000 0.00 0.00 0.00 2.17
63 64 0.885196 GTTGCACGCCCTTGGAAATA 59.115 50.000 0.00 0.00 0.00 1.40
64 65 1.476488 GTTGCACGCCCTTGGAAATAT 59.524 47.619 0.00 0.00 0.00 1.28
65 66 1.846007 TGCACGCCCTTGGAAATATT 58.154 45.000 0.00 0.00 0.00 1.28
66 67 2.175202 TGCACGCCCTTGGAAATATTT 58.825 42.857 0.00 0.00 0.00 1.40
67 68 2.094286 TGCACGCCCTTGGAAATATTTG 60.094 45.455 5.17 0.00 0.00 2.32
68 69 2.738321 GCACGCCCTTGGAAATATTTGG 60.738 50.000 5.17 1.25 0.00 3.28
69 70 2.495669 CACGCCCTTGGAAATATTTGGT 59.504 45.455 5.17 0.00 0.00 3.67
70 71 2.495669 ACGCCCTTGGAAATATTTGGTG 59.504 45.455 5.17 9.18 0.00 4.17
71 72 2.495669 CGCCCTTGGAAATATTTGGTGT 59.504 45.455 5.17 0.00 0.00 4.16
72 73 3.056179 CGCCCTTGGAAATATTTGGTGTT 60.056 43.478 5.17 0.00 0.00 3.32
73 74 4.503910 GCCCTTGGAAATATTTGGTGTTC 58.496 43.478 5.17 0.00 0.00 3.18
74 75 4.222810 GCCCTTGGAAATATTTGGTGTTCT 59.777 41.667 5.17 0.00 0.00 3.01
75 76 5.723295 CCCTTGGAAATATTTGGTGTTCTG 58.277 41.667 5.17 0.00 0.00 3.02
76 77 5.480073 CCCTTGGAAATATTTGGTGTTCTGA 59.520 40.000 5.17 0.00 0.00 3.27
77 78 6.155049 CCCTTGGAAATATTTGGTGTTCTGAT 59.845 38.462 5.17 0.00 0.00 2.90
78 79 7.260603 CCTTGGAAATATTTGGTGTTCTGATC 58.739 38.462 5.17 0.00 0.00 2.92
79 80 7.093814 CCTTGGAAATATTTGGTGTTCTGATCA 60.094 37.037 5.17 0.00 0.00 2.92
80 81 7.156876 TGGAAATATTTGGTGTTCTGATCAC 57.843 36.000 5.17 9.80 35.36 3.06
87 88 0.801251 GTGTTCTGATCACCAGCAGC 59.199 55.000 7.48 0.00 42.62 5.25
88 89 0.397564 TGTTCTGATCACCAGCAGCA 59.602 50.000 0.00 0.00 42.62 4.41
89 90 1.202794 TGTTCTGATCACCAGCAGCAA 60.203 47.619 0.00 0.00 42.62 3.91
90 91 1.467734 GTTCTGATCACCAGCAGCAAG 59.532 52.381 0.00 0.00 42.62 4.01
91 92 0.675837 TCTGATCACCAGCAGCAAGC 60.676 55.000 0.00 0.00 42.62 4.01
100 101 3.096791 GCAGCAAGCCAGTCGATC 58.903 61.111 0.00 0.00 37.23 3.69
101 102 2.467826 GCAGCAAGCCAGTCGATCC 61.468 63.158 0.00 0.00 37.23 3.36
102 103 2.169789 CAGCAAGCCAGTCGATCCG 61.170 63.158 0.00 0.00 0.00 4.18
103 104 2.125512 GCAAGCCAGTCGATCCGT 60.126 61.111 0.00 0.00 0.00 4.69
104 105 2.456119 GCAAGCCAGTCGATCCGTG 61.456 63.158 0.00 0.00 0.00 4.94
105 106 1.215382 CAAGCCAGTCGATCCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
106 107 0.179100 CAAGCCAGTCGATCCGTGAT 60.179 55.000 0.00 0.00 0.00 3.06
107 108 0.103208 AAGCCAGTCGATCCGTGATC 59.897 55.000 0.00 4.37 35.88 2.92
108 109 0.753479 AGCCAGTCGATCCGTGATCT 60.753 55.000 10.77 0.00 36.96 2.75
109 110 0.318275 GCCAGTCGATCCGTGATCTC 60.318 60.000 10.77 0.00 36.96 2.75
110 111 1.313772 CCAGTCGATCCGTGATCTCT 58.686 55.000 10.77 7.19 36.96 3.10
111 112 1.001924 CCAGTCGATCCGTGATCTCTG 60.002 57.143 17.77 17.77 36.96 3.35
112 113 1.673400 CAGTCGATCCGTGATCTCTGT 59.327 52.381 17.16 1.72 36.96 3.41
113 114 1.944024 AGTCGATCCGTGATCTCTGTC 59.056 52.381 10.77 0.00 36.96 3.51
114 115 1.944024 GTCGATCCGTGATCTCTGTCT 59.056 52.381 10.77 0.00 36.96 3.41
115 116 3.132160 GTCGATCCGTGATCTCTGTCTA 58.868 50.000 10.77 0.00 36.96 2.59
116 117 3.749088 GTCGATCCGTGATCTCTGTCTAT 59.251 47.826 10.77 0.00 36.96 1.98
117 118 4.930405 GTCGATCCGTGATCTCTGTCTATA 59.070 45.833 10.77 0.00 36.96 1.31
118 119 4.930405 TCGATCCGTGATCTCTGTCTATAC 59.070 45.833 10.77 0.00 36.96 1.47
119 120 4.691216 CGATCCGTGATCTCTGTCTATACA 59.309 45.833 10.77 0.00 36.96 2.29
120 121 5.163903 CGATCCGTGATCTCTGTCTATACAG 60.164 48.000 1.88 1.88 42.04 2.74
121 122 5.391523 GATCCGTGATCTCTGTCTATACAGC 60.392 48.000 3.43 0.00 39.91 4.40
122 123 7.733748 GATCCGTGATCTCTGTCTATACAGCA 61.734 46.154 3.43 0.00 39.91 4.41
123 124 9.421742 GATCCGTGATCTCTGTCTATACAGCAG 62.422 48.148 3.43 3.22 39.91 4.24
130 131 4.991153 CTGTCTATACAGCAGTTCCTCA 57.009 45.455 0.00 0.00 46.28 3.86
131 132 4.677584 CTGTCTATACAGCAGTTCCTCAC 58.322 47.826 0.00 0.00 46.28 3.51
132 133 3.128764 TGTCTATACAGCAGTTCCTCACG 59.871 47.826 0.00 0.00 0.00 4.35
133 134 3.377485 GTCTATACAGCAGTTCCTCACGA 59.623 47.826 0.00 0.00 0.00 4.35
134 135 2.949451 ATACAGCAGTTCCTCACGAG 57.051 50.000 0.00 0.00 0.00 4.18
135 136 0.243907 TACAGCAGTTCCTCACGAGC 59.756 55.000 0.00 0.00 0.00 5.03
136 137 1.005748 CAGCAGTTCCTCACGAGCA 60.006 57.895 0.00 0.00 34.71 4.26
137 138 0.390866 CAGCAGTTCCTCACGAGCAT 60.391 55.000 0.00 0.00 34.71 3.79
138 139 1.134995 CAGCAGTTCCTCACGAGCATA 60.135 52.381 0.00 0.00 34.71 3.14
139 140 1.550524 AGCAGTTCCTCACGAGCATAA 59.449 47.619 0.00 0.00 34.71 1.90
140 141 2.028112 AGCAGTTCCTCACGAGCATAAA 60.028 45.455 0.00 0.00 34.71 1.40
141 142 2.939103 GCAGTTCCTCACGAGCATAAAT 59.061 45.455 0.00 0.00 33.09 1.40
142 143 3.001736 GCAGTTCCTCACGAGCATAAATC 59.998 47.826 0.00 0.00 33.09 2.17
143 144 4.437239 CAGTTCCTCACGAGCATAAATCT 58.563 43.478 0.00 0.00 0.00 2.40
144 145 4.505922 CAGTTCCTCACGAGCATAAATCTC 59.494 45.833 0.00 0.00 0.00 2.75
145 146 3.735237 TCCTCACGAGCATAAATCTCC 57.265 47.619 0.00 0.00 0.00 3.71
146 147 2.365617 TCCTCACGAGCATAAATCTCCC 59.634 50.000 0.00 0.00 0.00 4.30
147 148 2.398498 CTCACGAGCATAAATCTCCCG 58.602 52.381 0.00 0.00 0.00 5.14
148 149 0.861837 CACGAGCATAAATCTCCCGC 59.138 55.000 0.00 0.00 0.00 6.13
149 150 0.464036 ACGAGCATAAATCTCCCGCA 59.536 50.000 0.00 0.00 0.00 5.69
150 151 1.143305 CGAGCATAAATCTCCCGCAG 58.857 55.000 0.00 0.00 0.00 5.18
151 152 0.871057 GAGCATAAATCTCCCGCAGC 59.129 55.000 0.00 0.00 0.00 5.25
152 153 0.471617 AGCATAAATCTCCCGCAGCT 59.528 50.000 0.00 0.00 0.00 4.24
153 154 0.590195 GCATAAATCTCCCGCAGCTG 59.410 55.000 10.11 10.11 0.00 4.24
154 155 1.959042 CATAAATCTCCCGCAGCTGT 58.041 50.000 16.64 0.00 0.00 4.40
155 156 2.292267 CATAAATCTCCCGCAGCTGTT 58.708 47.619 16.64 1.15 0.00 3.16
156 157 2.024176 TAAATCTCCCGCAGCTGTTC 57.976 50.000 16.64 0.00 0.00 3.18
157 158 0.326264 AAATCTCCCGCAGCTGTTCT 59.674 50.000 16.64 0.00 0.00 3.01
158 159 0.326264 AATCTCCCGCAGCTGTTCTT 59.674 50.000 16.64 0.00 0.00 2.52
159 160 0.107945 ATCTCCCGCAGCTGTTCTTC 60.108 55.000 16.64 0.00 0.00 2.87
160 161 1.743252 CTCCCGCAGCTGTTCTTCC 60.743 63.158 16.64 0.00 0.00 3.46
161 162 2.032528 CCCGCAGCTGTTCTTCCA 59.967 61.111 16.64 0.00 0.00 3.53
162 163 2.037136 CCCGCAGCTGTTCTTCCAG 61.037 63.158 16.64 0.00 35.49 3.86
163 164 1.302033 CCGCAGCTGTTCTTCCAGT 60.302 57.895 16.64 0.00 34.84 4.00
164 165 0.886490 CCGCAGCTGTTCTTCCAGTT 60.886 55.000 16.64 0.00 34.84 3.16
165 166 0.514691 CGCAGCTGTTCTTCCAGTTC 59.485 55.000 16.64 0.00 34.84 3.01
166 167 0.514691 GCAGCTGTTCTTCCAGTTCG 59.485 55.000 16.64 0.00 34.84 3.95
167 168 0.514691 CAGCTGTTCTTCCAGTTCGC 59.485 55.000 5.25 0.00 34.84 4.70
168 169 0.946221 AGCTGTTCTTCCAGTTCGCG 60.946 55.000 0.00 0.00 34.84 5.87
169 170 1.901650 GCTGTTCTTCCAGTTCGCGG 61.902 60.000 6.13 0.00 34.84 6.46
170 171 0.319555 CTGTTCTTCCAGTTCGCGGA 60.320 55.000 6.13 0.00 0.00 5.54
171 172 0.599204 TGTTCTTCCAGTTCGCGGAC 60.599 55.000 10.31 10.31 30.29 4.79
172 173 1.005394 TTCTTCCAGTTCGCGGACC 60.005 57.895 15.47 0.00 30.29 4.46
173 174 1.469335 TTCTTCCAGTTCGCGGACCT 61.469 55.000 15.47 0.00 30.29 3.85
174 175 1.446272 CTTCCAGTTCGCGGACCTC 60.446 63.158 15.47 0.00 30.29 3.85
175 176 2.154798 CTTCCAGTTCGCGGACCTCA 62.155 60.000 15.47 0.00 30.29 3.86
176 177 2.125912 CCAGTTCGCGGACCTCAG 60.126 66.667 15.47 1.64 0.00 3.35
177 178 2.636412 CCAGTTCGCGGACCTCAGA 61.636 63.158 15.47 0.00 0.00 3.27
178 179 1.153939 CAGTTCGCGGACCTCAGAG 60.154 63.158 15.47 0.00 0.00 3.35
179 180 1.604023 AGTTCGCGGACCTCAGAGT 60.604 57.895 15.47 0.00 0.00 3.24
180 181 1.153997 GTTCGCGGACCTCAGAGTC 60.154 63.158 6.15 0.00 35.95 3.36
187 188 2.585876 GACCTCAGAGTCCAGACCC 58.414 63.158 0.00 0.00 0.00 4.46
188 189 0.251832 GACCTCAGAGTCCAGACCCA 60.252 60.000 0.00 0.00 0.00 4.51
189 190 0.191064 ACCTCAGAGTCCAGACCCAA 59.809 55.000 0.00 0.00 0.00 4.12
190 191 0.901124 CCTCAGAGTCCAGACCCAAG 59.099 60.000 0.00 0.00 0.00 3.61
191 192 1.638529 CTCAGAGTCCAGACCCAAGT 58.361 55.000 0.00 0.00 0.00 3.16
192 193 1.274728 CTCAGAGTCCAGACCCAAGTG 59.725 57.143 0.00 0.00 0.00 3.16
193 194 0.321122 CAGAGTCCAGACCCAAGTGC 60.321 60.000 0.00 0.00 0.00 4.40
194 195 0.472734 AGAGTCCAGACCCAAGTGCT 60.473 55.000 0.00 0.00 0.00 4.40
195 196 0.036858 GAGTCCAGACCCAAGTGCTC 60.037 60.000 0.00 0.00 0.00 4.26
196 197 0.472734 AGTCCAGACCCAAGTGCTCT 60.473 55.000 0.00 0.00 0.00 4.09
197 198 0.321122 GTCCAGACCCAAGTGCTCTG 60.321 60.000 0.00 0.00 32.66 3.35
198 199 0.764369 TCCAGACCCAAGTGCTCTGT 60.764 55.000 0.00 0.00 31.16 3.41
199 200 0.976641 CCAGACCCAAGTGCTCTGTA 59.023 55.000 0.00 0.00 31.16 2.74
200 201 1.338200 CCAGACCCAAGTGCTCTGTAC 60.338 57.143 0.00 0.00 31.16 2.90
201 202 1.620819 CAGACCCAAGTGCTCTGTACT 59.379 52.381 0.00 0.00 0.00 2.73
202 203 2.037772 CAGACCCAAGTGCTCTGTACTT 59.962 50.000 0.00 0.00 38.91 2.24
203 204 3.258372 CAGACCCAAGTGCTCTGTACTTA 59.742 47.826 1.12 0.00 36.42 2.24
204 205 3.511934 AGACCCAAGTGCTCTGTACTTAG 59.488 47.826 1.12 0.00 36.42 2.18
205 206 2.028020 ACCCAAGTGCTCTGTACTTAGC 60.028 50.000 11.66 11.66 36.42 3.09
206 207 2.028112 CCCAAGTGCTCTGTACTTAGCA 60.028 50.000 15.83 15.83 46.11 3.49
213 214 5.521906 TGCTCTGTACTTAGCATAAGAGG 57.478 43.478 15.83 0.00 43.56 3.69
214 215 5.201243 TGCTCTGTACTTAGCATAAGAGGA 58.799 41.667 15.83 5.83 43.56 3.71
215 216 5.656859 TGCTCTGTACTTAGCATAAGAGGAA 59.343 40.000 15.83 0.00 43.56 3.36
216 217 6.183360 TGCTCTGTACTTAGCATAAGAGGAAG 60.183 42.308 15.83 0.00 43.56 3.46
217 218 6.716934 TCTGTACTTAGCATAAGAGGAAGG 57.283 41.667 3.64 0.00 0.00 3.46
218 219 6.195700 TCTGTACTTAGCATAAGAGGAAGGT 58.804 40.000 3.64 0.00 0.00 3.50
219 220 7.351952 TCTGTACTTAGCATAAGAGGAAGGTA 58.648 38.462 3.64 0.00 0.00 3.08
220 221 7.502895 TCTGTACTTAGCATAAGAGGAAGGTAG 59.497 40.741 3.64 0.00 0.00 3.18
221 222 5.538849 ACTTAGCATAAGAGGAAGGTAGC 57.461 43.478 3.64 0.00 0.00 3.58
222 223 5.212745 ACTTAGCATAAGAGGAAGGTAGCT 58.787 41.667 3.64 0.00 35.06 3.32
223 224 6.374588 ACTTAGCATAAGAGGAAGGTAGCTA 58.625 40.000 0.00 0.00 32.70 3.32
224 225 6.492087 ACTTAGCATAAGAGGAAGGTAGCTAG 59.508 42.308 0.00 0.00 35.13 3.42
225 226 3.576550 AGCATAAGAGGAAGGTAGCTAGC 59.423 47.826 15.19 15.19 0.00 3.42
226 227 3.576550 GCATAAGAGGAAGGTAGCTAGCT 59.423 47.826 23.12 23.12 35.17 3.32
227 228 4.767928 GCATAAGAGGAAGGTAGCTAGCTA 59.232 45.833 24.93 20.67 33.01 3.32
228 229 5.105917 GCATAAGAGGAAGGTAGCTAGCTAG 60.106 48.000 24.78 16.84 33.01 3.42
229 230 4.529716 AAGAGGAAGGTAGCTAGCTAGT 57.470 45.455 24.78 12.40 33.01 2.57
230 231 5.649970 AAGAGGAAGGTAGCTAGCTAGTA 57.350 43.478 24.78 2.67 33.01 1.82
231 232 5.237236 AGAGGAAGGTAGCTAGCTAGTAG 57.763 47.826 24.78 0.00 33.01 2.57
232 233 4.661709 AGAGGAAGGTAGCTAGCTAGTAGT 59.338 45.833 24.78 9.77 33.01 2.73
233 234 4.721132 AGGAAGGTAGCTAGCTAGTAGTG 58.279 47.826 24.78 0.00 33.01 2.74
234 235 4.166531 AGGAAGGTAGCTAGCTAGTAGTGT 59.833 45.833 24.78 8.27 33.01 3.55
235 236 4.888823 GGAAGGTAGCTAGCTAGTAGTGTT 59.111 45.833 24.78 11.37 33.01 3.32
236 237 5.221087 GGAAGGTAGCTAGCTAGTAGTGTTG 60.221 48.000 24.78 0.00 33.01 3.33
237 238 4.208746 AGGTAGCTAGCTAGTAGTGTTGG 58.791 47.826 24.78 0.00 31.28 3.77
238 239 3.952967 GGTAGCTAGCTAGTAGTGTTGGT 59.047 47.826 24.78 2.66 0.00 3.67
239 240 4.202030 GGTAGCTAGCTAGTAGTGTTGGTG 60.202 50.000 24.78 0.00 0.00 4.17
240 241 2.166664 AGCTAGCTAGTAGTGTTGGTGC 59.833 50.000 17.69 3.96 0.00 5.01
241 242 2.094182 GCTAGCTAGTAGTGTTGGTGCA 60.094 50.000 21.62 0.00 0.00 4.57
242 243 2.751166 AGCTAGTAGTGTTGGTGCAG 57.249 50.000 0.00 0.00 0.00 4.41
243 244 2.248248 AGCTAGTAGTGTTGGTGCAGA 58.752 47.619 0.00 0.00 0.00 4.26
244 245 2.834549 AGCTAGTAGTGTTGGTGCAGAT 59.165 45.455 0.00 0.00 0.00 2.90
245 246 4.023980 AGCTAGTAGTGTTGGTGCAGATA 58.976 43.478 0.00 0.00 0.00 1.98
246 247 4.113354 GCTAGTAGTGTTGGTGCAGATAC 58.887 47.826 0.00 0.00 0.00 2.24
247 248 4.381612 GCTAGTAGTGTTGGTGCAGATACA 60.382 45.833 0.00 0.00 0.00 2.29
248 249 4.826274 AGTAGTGTTGGTGCAGATACAT 57.174 40.909 0.00 0.00 0.00 2.29
249 250 5.932619 AGTAGTGTTGGTGCAGATACATA 57.067 39.130 0.00 0.00 0.00 2.29
250 251 5.661458 AGTAGTGTTGGTGCAGATACATAC 58.339 41.667 0.00 0.00 0.00 2.39
251 252 4.551702 AGTGTTGGTGCAGATACATACA 57.448 40.909 0.00 0.00 0.00 2.29
252 253 5.102953 AGTGTTGGTGCAGATACATACAT 57.897 39.130 0.00 0.00 0.00 2.29
253 254 6.233905 AGTGTTGGTGCAGATACATACATA 57.766 37.500 0.00 0.00 0.00 2.29
254 255 6.049149 AGTGTTGGTGCAGATACATACATAC 58.951 40.000 0.00 0.00 0.00 2.39
255 256 6.049149 GTGTTGGTGCAGATACATACATACT 58.951 40.000 0.00 0.00 0.00 2.12
256 257 6.018751 GTGTTGGTGCAGATACATACATACTG 60.019 42.308 0.00 0.00 0.00 2.74
257 258 5.869649 TGGTGCAGATACATACATACTGT 57.130 39.130 0.00 0.00 0.00 3.55
258 259 6.233905 TGGTGCAGATACATACATACTGTT 57.766 37.500 0.00 0.00 0.00 3.16
259 260 6.048509 TGGTGCAGATACATACATACTGTTG 58.951 40.000 0.00 0.00 0.00 3.33
260 261 6.049149 GGTGCAGATACATACATACTGTTGT 58.951 40.000 0.00 0.00 0.00 3.32
261 262 6.018751 GGTGCAGATACATACATACTGTTGTG 60.019 42.308 0.00 0.09 0.00 3.33
262 263 6.535150 GTGCAGATACATACATACTGTTGTGT 59.465 38.462 0.00 4.36 34.17 3.72
263 264 7.704899 GTGCAGATACATACATACTGTTGTGTA 59.295 37.037 7.78 7.78 35.91 2.90
264 265 7.704899 TGCAGATACATACATACTGTTGTGTAC 59.295 37.037 7.57 0.00 35.01 2.90
265 266 7.096599 GCAGATACATACATACTGTTGTGTACG 60.097 40.741 7.57 3.69 35.01 3.67
266 267 6.916387 AGATACATACATACTGTTGTGTACGC 59.084 38.462 0.00 0.00 35.01 4.42
267 268 5.068234 ACATACATACTGTTGTGTACGCT 57.932 39.130 8.10 0.00 32.67 5.07
268 269 4.862574 ACATACATACTGTTGTGTACGCTG 59.137 41.667 8.10 0.00 32.67 5.18
269 270 2.066262 ACATACTGTTGTGTACGCTGC 58.934 47.619 8.10 1.17 0.00 5.25
270 271 1.059122 CATACTGTTGTGTACGCTGCG 59.941 52.381 21.91 21.91 0.00 5.18
271 272 1.279527 TACTGTTGTGTACGCTGCGC 61.280 55.000 23.51 7.39 0.00 6.09
282 283 2.320044 GCTGCGCGTACGAATTCC 59.680 61.111 21.65 0.00 43.93 3.01
283 284 2.165301 GCTGCGCGTACGAATTCCT 61.165 57.895 21.65 0.00 43.93 3.36
284 285 1.693083 GCTGCGCGTACGAATTCCTT 61.693 55.000 21.65 0.00 43.93 3.36
285 286 0.025001 CTGCGCGTACGAATTCCTTG 59.975 55.000 21.65 0.00 43.93 3.61
286 287 0.388778 TGCGCGTACGAATTCCTTGA 60.389 50.000 21.65 0.00 43.93 3.02
287 288 0.717224 GCGCGTACGAATTCCTTGAA 59.283 50.000 21.65 0.00 43.93 2.69
288 289 1.127213 GCGCGTACGAATTCCTTGAAA 59.873 47.619 21.65 0.00 43.93 2.69
289 290 2.411806 GCGCGTACGAATTCCTTGAAAA 60.412 45.455 21.65 0.00 43.93 2.29
290 291 3.150731 CGCGTACGAATTCCTTGAAAAC 58.849 45.455 21.65 0.00 43.93 2.43
291 292 3.363182 CGCGTACGAATTCCTTGAAAACA 60.363 43.478 21.65 0.00 43.93 2.83
292 293 4.529446 GCGTACGAATTCCTTGAAAACAA 58.471 39.130 21.65 0.00 0.00 2.83
293 294 4.971220 GCGTACGAATTCCTTGAAAACAAA 59.029 37.500 21.65 0.00 0.00 2.83
294 295 5.627780 GCGTACGAATTCCTTGAAAACAAAT 59.372 36.000 21.65 0.00 0.00 2.32
295 296 6.143278 GCGTACGAATTCCTTGAAAACAAATT 59.857 34.615 21.65 0.00 0.00 1.82
296 297 7.324135 GCGTACGAATTCCTTGAAAACAAATTA 59.676 33.333 21.65 0.00 0.00 1.40
297 298 9.171701 CGTACGAATTCCTTGAAAACAAATTAA 57.828 29.630 10.44 0.00 0.00 1.40
304 305 7.962934 TCCTTGAAAACAAATTAATATCGCG 57.037 32.000 0.00 0.00 0.00 5.87
305 306 6.470877 TCCTTGAAAACAAATTAATATCGCGC 59.529 34.615 0.00 0.00 0.00 6.86
306 307 5.841608 TGAAAACAAATTAATATCGCGCG 57.158 34.783 26.76 26.76 0.00 6.86
307 308 5.325494 TGAAAACAAATTAATATCGCGCGT 58.675 33.333 30.98 19.23 0.00 6.01
308 309 5.226154 TGAAAACAAATTAATATCGCGCGTG 59.774 36.000 30.98 19.12 0.00 5.34
309 310 4.523853 AACAAATTAATATCGCGCGTGA 57.476 36.364 30.98 26.23 0.00 4.35
310 311 3.857194 ACAAATTAATATCGCGCGTGAC 58.143 40.909 30.98 0.00 0.00 3.67
311 312 3.307512 ACAAATTAATATCGCGCGTGACA 59.692 39.130 30.98 15.39 0.00 3.58
312 313 3.499072 AATTAATATCGCGCGTGACAC 57.501 42.857 30.98 0.00 0.00 3.67
313 314 2.197792 TTAATATCGCGCGTGACACT 57.802 45.000 30.98 12.27 0.00 3.55
314 315 3.337301 TTAATATCGCGCGTGACACTA 57.663 42.857 30.98 14.28 0.00 2.74
315 316 1.755161 AATATCGCGCGTGACACTAG 58.245 50.000 30.98 0.00 0.00 2.57
316 317 0.660595 ATATCGCGCGTGACACTAGC 60.661 55.000 30.98 7.93 0.00 3.42
317 318 2.657484 TATCGCGCGTGACACTAGCC 62.657 60.000 30.98 0.00 0.00 3.93
322 323 4.063967 CGTGACACTAGCCGGCCA 62.064 66.667 26.15 9.26 0.00 5.36
323 324 2.584608 GTGACACTAGCCGGCCAT 59.415 61.111 26.15 8.44 0.00 4.40
324 325 1.078426 GTGACACTAGCCGGCCATT 60.078 57.895 26.15 7.52 0.00 3.16
325 326 1.078497 TGACACTAGCCGGCCATTG 60.078 57.895 26.15 17.54 0.00 2.82
326 327 2.438434 ACACTAGCCGGCCATTGC 60.438 61.111 26.15 1.36 0.00 3.56
359 360 4.772046 TTTATGTGCGATCGAGTTAAGC 57.228 40.909 21.57 0.00 0.00 3.09
360 361 1.571919 ATGTGCGATCGAGTTAAGCC 58.428 50.000 21.57 0.00 0.00 4.35
361 362 0.530744 TGTGCGATCGAGTTAAGCCT 59.469 50.000 21.57 0.00 0.00 4.58
362 363 1.067142 TGTGCGATCGAGTTAAGCCTT 60.067 47.619 21.57 0.00 0.00 4.35
363 364 1.324736 GTGCGATCGAGTTAAGCCTTG 59.675 52.381 21.57 0.00 0.00 3.61
364 365 1.203758 TGCGATCGAGTTAAGCCTTGA 59.796 47.619 21.57 0.00 0.00 3.02
365 366 2.159099 TGCGATCGAGTTAAGCCTTGAT 60.159 45.455 21.57 0.00 38.12 2.57
366 367 2.866762 GCGATCGAGTTAAGCCTTGATT 59.133 45.455 21.57 0.00 36.02 2.57
367 368 3.060205 GCGATCGAGTTAAGCCTTGATTC 60.060 47.826 21.57 0.00 36.02 2.52
368 369 4.112634 CGATCGAGTTAAGCCTTGATTCA 58.887 43.478 10.26 0.00 36.02 2.57
369 370 4.747108 CGATCGAGTTAAGCCTTGATTCAT 59.253 41.667 10.26 0.00 36.02 2.57
370 371 5.920840 CGATCGAGTTAAGCCTTGATTCATA 59.079 40.000 10.26 0.00 36.02 2.15
371 372 6.088749 CGATCGAGTTAAGCCTTGATTCATAG 59.911 42.308 10.26 0.00 36.02 2.23
372 373 6.465439 TCGAGTTAAGCCTTGATTCATAGA 57.535 37.500 0.00 0.00 0.00 1.98
373 374 6.507900 TCGAGTTAAGCCTTGATTCATAGAG 58.492 40.000 0.00 0.00 0.00 2.43
374 375 5.694006 CGAGTTAAGCCTTGATTCATAGAGG 59.306 44.000 0.00 0.00 0.00 3.69
375 376 6.567602 AGTTAAGCCTTGATTCATAGAGGT 57.432 37.500 5.08 0.00 0.00 3.85
376 377 7.470147 CGAGTTAAGCCTTGATTCATAGAGGTA 60.470 40.741 5.08 0.00 0.00 3.08
377 378 7.731054 AGTTAAGCCTTGATTCATAGAGGTAG 58.269 38.462 5.08 0.00 0.00 3.18
378 379 4.615588 AGCCTTGATTCATAGAGGTAGC 57.384 45.455 5.08 0.00 0.00 3.58
379 380 3.006323 AGCCTTGATTCATAGAGGTAGCG 59.994 47.826 5.08 0.00 0.00 4.26
380 381 3.005897 GCCTTGATTCATAGAGGTAGCGA 59.994 47.826 5.08 0.00 0.00 4.93
381 382 4.501571 GCCTTGATTCATAGAGGTAGCGAA 60.502 45.833 5.08 0.00 0.00 4.70
382 383 4.985409 CCTTGATTCATAGAGGTAGCGAAC 59.015 45.833 0.00 0.00 0.00 3.95
394 395 2.906354 GTAGCGAACCATCAATCAGGT 58.094 47.619 0.00 0.00 40.61 4.00
395 396 4.054780 GTAGCGAACCATCAATCAGGTA 57.945 45.455 0.00 0.00 37.07 3.08
396 397 3.185246 AGCGAACCATCAATCAGGTAG 57.815 47.619 0.00 0.00 37.07 3.18
397 398 2.501723 AGCGAACCATCAATCAGGTAGT 59.498 45.455 0.00 0.00 37.07 2.73
398 399 3.055094 AGCGAACCATCAATCAGGTAGTT 60.055 43.478 0.00 0.00 37.07 2.24
399 400 3.689649 GCGAACCATCAATCAGGTAGTTT 59.310 43.478 0.00 0.00 37.07 2.66
400 401 4.201822 GCGAACCATCAATCAGGTAGTTTC 60.202 45.833 0.00 0.00 37.07 2.78
401 402 4.032900 CGAACCATCAATCAGGTAGTTTCG 59.967 45.833 0.00 0.00 37.07 3.46
402 403 4.553330 ACCATCAATCAGGTAGTTTCGT 57.447 40.909 0.00 0.00 36.07 3.85
403 404 4.906618 ACCATCAATCAGGTAGTTTCGTT 58.093 39.130 0.00 0.00 36.07 3.85
404 405 4.695455 ACCATCAATCAGGTAGTTTCGTTG 59.305 41.667 0.00 0.00 36.07 4.10
405 406 4.094887 CCATCAATCAGGTAGTTTCGTTGG 59.905 45.833 0.00 0.00 0.00 3.77
406 407 3.071479 TCAATCAGGTAGTTTCGTTGGC 58.929 45.455 0.00 0.00 0.00 4.52
407 408 3.074412 CAATCAGGTAGTTTCGTTGGCT 58.926 45.455 0.00 0.00 0.00 4.75
408 409 2.163818 TCAGGTAGTTTCGTTGGCTG 57.836 50.000 0.00 0.00 0.00 4.85
409 410 1.689813 TCAGGTAGTTTCGTTGGCTGA 59.310 47.619 0.00 0.00 0.00 4.26
410 411 2.103432 TCAGGTAGTTTCGTTGGCTGAA 59.897 45.455 0.00 0.00 0.00 3.02
411 412 2.875933 CAGGTAGTTTCGTTGGCTGAAA 59.124 45.455 0.00 0.00 33.18 2.69
417 418 3.859411 TTTCGTTGGCTGAAACAACTT 57.141 38.095 6.72 0.00 44.49 2.66
418 419 3.414549 TTCGTTGGCTGAAACAACTTC 57.585 42.857 6.72 0.00 44.49 3.01
419 420 1.329292 TCGTTGGCTGAAACAACTTCG 59.671 47.619 6.72 0.00 44.49 3.79
420 421 1.596954 CGTTGGCTGAAACAACTTCGG 60.597 52.381 6.72 0.00 44.49 4.30
421 422 1.028905 TTGGCTGAAACAACTTCGGG 58.971 50.000 0.00 0.00 40.35 5.14
422 423 0.106918 TGGCTGAAACAACTTCGGGT 60.107 50.000 0.00 0.00 40.35 5.28
423 424 0.591659 GGCTGAAACAACTTCGGGTC 59.408 55.000 0.00 0.00 40.35 4.46
424 425 1.305201 GCTGAAACAACTTCGGGTCA 58.695 50.000 0.00 0.00 40.35 4.02
425 426 1.264288 GCTGAAACAACTTCGGGTCAG 59.736 52.381 0.00 0.00 40.35 3.51
426 427 2.561569 CTGAAACAACTTCGGGTCAGT 58.438 47.619 0.00 0.00 36.84 3.41
427 428 2.544267 CTGAAACAACTTCGGGTCAGTC 59.456 50.000 0.00 0.00 36.84 3.51
428 429 1.525619 GAAACAACTTCGGGTCAGTCG 59.474 52.381 0.00 0.00 0.00 4.18
429 430 0.748450 AACAACTTCGGGTCAGTCGA 59.252 50.000 0.00 0.00 34.62 4.20
430 431 0.031721 ACAACTTCGGGTCAGTCGAC 59.968 55.000 7.70 7.70 41.80 4.20
431 432 0.314302 CAACTTCGGGTCAGTCGACT 59.686 55.000 13.58 13.58 42.21 4.18
432 433 0.314302 AACTTCGGGTCAGTCGACTG 59.686 55.000 34.76 34.76 45.08 3.51
546 553 4.329256 GTGCCTAAGTTGATCTCGTTAACC 59.671 45.833 0.00 0.00 0.00 2.85
583 590 5.241285 TGCACAAAAAGAATCACATCTAGCA 59.759 36.000 0.00 0.00 0.00 3.49
657 671 1.973812 GAGGGTGCTGAAGTTGGCC 60.974 63.158 0.00 0.00 0.00 5.36
1323 1346 2.496070 AGTAGTAGAAGTGCAATGGCGA 59.504 45.455 0.00 0.00 45.35 5.54
1341 1364 2.400399 CGAAGTACCAAGAACTTGCGA 58.600 47.619 8.81 0.00 37.31 5.10
1398 1421 1.225704 GCCTGATGAGGTCCTTGGG 59.774 63.158 0.00 0.00 42.15 4.12
1769 1792 0.675083 CTGCCACATTGGTTGAGCAA 59.325 50.000 0.00 0.00 40.46 3.91
1772 1795 1.069049 GCCACATTGGTTGAGCAAACT 59.931 47.619 0.00 0.00 40.46 2.66
1774 1797 3.125316 CCACATTGGTTGAGCAAACTTG 58.875 45.455 0.00 0.91 38.92 3.16
1785 1808 3.942748 TGAGCAAACTTGGTTAGTTCGTT 59.057 39.130 0.00 0.00 46.34 3.85
1799 1822 1.225376 TTCGTTGCCTTCGTTGCGAT 61.225 50.000 0.00 0.00 35.23 4.58
1830 1853 1.088306 AGAACGTCGATCGAGAAGCT 58.912 50.000 20.09 11.11 42.86 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.997454 CGTGCAACTCATCGTAAGCGAAAAA 62.997 44.000 0.00 0.00 42.85 1.94
28 29 6.627081 CGTGCAACTCATCGTAAGCGAAAA 62.627 45.833 0.00 0.00 42.85 2.29
29 30 5.226152 CGTGCAACTCATCGTAAGCGAAA 62.226 47.826 0.00 0.00 42.85 3.46
30 31 3.790722 CGTGCAACTCATCGTAAGCGAA 61.791 50.000 0.00 0.00 42.85 4.70
31 32 2.316138 CGTGCAACTCATCGTAAGCGA 61.316 52.381 0.00 0.00 43.48 4.93
32 33 0.023732 CGTGCAACTCATCGTAAGCG 59.976 55.000 0.00 0.00 34.94 4.68
33 34 0.247301 GCGTGCAACTCATCGTAAGC 60.247 55.000 0.00 0.00 31.95 3.09
34 35 0.370273 GGCGTGCAACTCATCGTAAG 59.630 55.000 0.00 0.00 31.75 2.34
35 36 1.017177 GGGCGTGCAACTCATCGTAA 61.017 55.000 0.00 0.00 31.75 3.18
36 37 1.447140 GGGCGTGCAACTCATCGTA 60.447 57.895 0.00 0.00 31.75 3.43
37 38 2.731691 AAGGGCGTGCAACTCATCGT 62.732 55.000 0.00 0.00 31.75 3.73
38 39 2.034879 AAGGGCGTGCAACTCATCG 61.035 57.895 0.00 0.00 31.75 3.84
39 40 1.503542 CAAGGGCGTGCAACTCATC 59.496 57.895 0.00 0.00 31.75 2.92
40 41 1.973281 CCAAGGGCGTGCAACTCAT 60.973 57.895 0.00 0.00 31.75 2.90
41 42 2.594303 CCAAGGGCGTGCAACTCA 60.594 61.111 0.00 0.00 31.75 3.41
42 43 1.452145 TTTCCAAGGGCGTGCAACTC 61.452 55.000 0.00 0.00 31.75 3.01
43 44 0.827507 ATTTCCAAGGGCGTGCAACT 60.828 50.000 0.00 0.00 31.75 3.16
44 45 0.885196 TATTTCCAAGGGCGTGCAAC 59.115 50.000 0.00 0.00 0.00 4.17
45 46 1.846007 ATATTTCCAAGGGCGTGCAA 58.154 45.000 0.00 0.00 0.00 4.08
46 47 1.846007 AATATTTCCAAGGGCGTGCA 58.154 45.000 0.00 0.00 0.00 4.57
47 48 2.539476 CAAATATTTCCAAGGGCGTGC 58.461 47.619 0.00 0.00 0.00 5.34
48 49 2.495669 ACCAAATATTTCCAAGGGCGTG 59.504 45.455 0.00 0.00 0.00 5.34
49 50 2.495669 CACCAAATATTTCCAAGGGCGT 59.504 45.455 0.00 0.00 0.00 5.68
50 51 2.495669 ACACCAAATATTTCCAAGGGCG 59.504 45.455 0.00 0.00 0.00 6.13
51 52 4.222810 AGAACACCAAATATTTCCAAGGGC 59.777 41.667 0.00 0.00 0.00 5.19
52 53 5.480073 TCAGAACACCAAATATTTCCAAGGG 59.520 40.000 0.00 0.00 0.00 3.95
53 54 6.588719 TCAGAACACCAAATATTTCCAAGG 57.411 37.500 0.00 0.00 0.00 3.61
54 55 7.756722 GTGATCAGAACACCAAATATTTCCAAG 59.243 37.037 0.00 0.00 32.84 3.61
55 56 7.601856 GTGATCAGAACACCAAATATTTCCAA 58.398 34.615 0.00 0.00 32.84 3.53
56 57 7.156876 GTGATCAGAACACCAAATATTTCCA 57.843 36.000 0.00 0.00 32.84 3.53
68 69 0.801251 GCTGCTGGTGATCAGAACAC 59.199 55.000 0.00 2.14 46.18 3.32
69 70 0.397564 TGCTGCTGGTGATCAGAACA 59.602 50.000 0.00 0.00 46.18 3.18
70 71 1.467734 CTTGCTGCTGGTGATCAGAAC 59.532 52.381 0.00 0.00 46.18 3.01
71 72 1.817357 CTTGCTGCTGGTGATCAGAA 58.183 50.000 0.00 0.00 46.18 3.02
72 73 0.675837 GCTTGCTGCTGGTGATCAGA 60.676 55.000 0.00 0.00 46.18 3.27
73 74 1.654954 GGCTTGCTGCTGGTGATCAG 61.655 60.000 0.00 0.00 46.03 2.90
74 75 1.676635 GGCTTGCTGCTGGTGATCA 60.677 57.895 0.00 0.00 42.39 2.92
75 76 1.654954 CTGGCTTGCTGCTGGTGATC 61.655 60.000 0.00 0.00 42.39 2.92
76 77 1.677966 CTGGCTTGCTGCTGGTGAT 60.678 57.895 0.00 0.00 42.39 3.06
77 78 2.281970 CTGGCTTGCTGCTGGTGA 60.282 61.111 0.00 0.00 42.39 4.02
78 79 2.596631 ACTGGCTTGCTGCTGGTG 60.597 61.111 0.00 0.00 42.39 4.17
79 80 2.282040 GACTGGCTTGCTGCTGGT 60.282 61.111 0.00 2.46 42.39 4.00
80 81 3.429141 CGACTGGCTTGCTGCTGG 61.429 66.667 0.00 0.00 42.39 4.85
81 82 1.703438 GATCGACTGGCTTGCTGCTG 61.703 60.000 0.00 0.00 42.39 4.41
82 83 1.449246 GATCGACTGGCTTGCTGCT 60.449 57.895 0.00 0.00 42.39 4.24
83 84 2.467826 GGATCGACTGGCTTGCTGC 61.468 63.158 0.00 0.00 41.94 5.25
84 85 2.169789 CGGATCGACTGGCTTGCTG 61.170 63.158 0.00 0.00 0.00 4.41
85 86 2.185350 CGGATCGACTGGCTTGCT 59.815 61.111 0.00 0.00 0.00 3.91
86 87 2.125512 ACGGATCGACTGGCTTGC 60.126 61.111 0.00 0.00 0.00 4.01
87 88 0.179100 ATCACGGATCGACTGGCTTG 60.179 55.000 0.00 0.00 0.00 4.01
88 89 0.103208 GATCACGGATCGACTGGCTT 59.897 55.000 0.00 0.00 29.12 4.35
89 90 0.753479 AGATCACGGATCGACTGGCT 60.753 55.000 0.00 0.00 43.17 4.75
90 91 0.318275 GAGATCACGGATCGACTGGC 60.318 60.000 0.00 0.00 43.17 4.85
91 92 1.001924 CAGAGATCACGGATCGACTGG 60.002 57.143 21.10 12.02 43.17 4.00
92 93 1.673400 ACAGAGATCACGGATCGACTG 59.327 52.381 23.79 23.79 44.55 3.51
93 94 1.944024 GACAGAGATCACGGATCGACT 59.056 52.381 0.00 8.55 43.17 4.18
94 95 1.944024 AGACAGAGATCACGGATCGAC 59.056 52.381 0.00 6.96 43.17 4.20
95 96 2.333688 AGACAGAGATCACGGATCGA 57.666 50.000 0.00 0.00 43.17 3.59
96 97 4.691216 TGTATAGACAGAGATCACGGATCG 59.309 45.833 0.00 0.00 43.17 3.69
110 111 3.128764 CGTGAGGAACTGCTGTATAGACA 59.871 47.826 0.00 0.00 41.55 3.41
111 112 3.377485 TCGTGAGGAACTGCTGTATAGAC 59.623 47.826 0.00 0.00 41.55 2.59
112 113 3.617284 TCGTGAGGAACTGCTGTATAGA 58.383 45.455 0.00 0.00 41.55 1.98
113 114 3.793801 GCTCGTGAGGAACTGCTGTATAG 60.794 52.174 0.00 0.00 41.55 1.31
114 115 2.099263 GCTCGTGAGGAACTGCTGTATA 59.901 50.000 0.00 0.00 41.55 1.47
115 116 1.134965 GCTCGTGAGGAACTGCTGTAT 60.135 52.381 0.00 0.00 41.55 2.29
116 117 0.243907 GCTCGTGAGGAACTGCTGTA 59.756 55.000 0.00 0.00 41.55 2.74
117 118 1.005630 GCTCGTGAGGAACTGCTGT 60.006 57.895 0.00 0.00 41.55 4.40
118 119 0.390866 ATGCTCGTGAGGAACTGCTG 60.391 55.000 0.00 0.00 41.55 4.41
119 120 1.186200 TATGCTCGTGAGGAACTGCT 58.814 50.000 0.00 0.00 41.55 4.24
120 121 2.010145 TTATGCTCGTGAGGAACTGC 57.990 50.000 0.00 0.00 41.55 4.40
121 122 4.437239 AGATTTATGCTCGTGAGGAACTG 58.563 43.478 0.00 0.00 41.55 3.16
122 123 4.442192 GGAGATTTATGCTCGTGAGGAACT 60.442 45.833 0.00 0.00 35.36 3.01
123 124 3.804873 GGAGATTTATGCTCGTGAGGAAC 59.195 47.826 0.00 0.00 33.19 3.62
124 125 3.181465 GGGAGATTTATGCTCGTGAGGAA 60.181 47.826 0.00 0.00 33.19 3.36
125 126 2.365617 GGGAGATTTATGCTCGTGAGGA 59.634 50.000 0.00 0.00 33.19 3.71
126 127 2.760374 GGGAGATTTATGCTCGTGAGG 58.240 52.381 0.00 0.00 33.19 3.86
127 128 2.398498 CGGGAGATTTATGCTCGTGAG 58.602 52.381 0.00 0.00 33.19 3.51
128 129 1.538204 GCGGGAGATTTATGCTCGTGA 60.538 52.381 0.00 0.00 33.19 4.35
129 130 0.861837 GCGGGAGATTTATGCTCGTG 59.138 55.000 0.00 0.00 33.19 4.35
130 131 0.464036 TGCGGGAGATTTATGCTCGT 59.536 50.000 0.00 0.00 33.19 4.18
131 132 1.143305 CTGCGGGAGATTTATGCTCG 58.857 55.000 0.00 0.00 33.19 5.03
132 133 0.871057 GCTGCGGGAGATTTATGCTC 59.129 55.000 0.00 0.00 0.00 4.26
133 134 0.471617 AGCTGCGGGAGATTTATGCT 59.528 50.000 0.00 0.00 0.00 3.79
134 135 0.590195 CAGCTGCGGGAGATTTATGC 59.410 55.000 0.00 0.00 0.00 3.14
135 136 1.959042 ACAGCTGCGGGAGATTTATG 58.041 50.000 15.27 0.00 0.00 1.90
136 137 2.171448 AGAACAGCTGCGGGAGATTTAT 59.829 45.455 15.27 0.00 0.00 1.40
137 138 1.555075 AGAACAGCTGCGGGAGATTTA 59.445 47.619 15.27 0.00 0.00 1.40
138 139 0.326264 AGAACAGCTGCGGGAGATTT 59.674 50.000 15.27 0.00 0.00 2.17
139 140 0.326264 AAGAACAGCTGCGGGAGATT 59.674 50.000 15.27 0.00 0.00 2.40
140 141 0.107945 GAAGAACAGCTGCGGGAGAT 60.108 55.000 15.27 0.00 0.00 2.75
141 142 1.293498 GAAGAACAGCTGCGGGAGA 59.707 57.895 15.27 0.00 0.00 3.71
142 143 1.743252 GGAAGAACAGCTGCGGGAG 60.743 63.158 15.27 0.00 0.00 4.30
143 144 2.347490 GGAAGAACAGCTGCGGGA 59.653 61.111 15.27 0.00 0.00 5.14
144 145 2.032528 TGGAAGAACAGCTGCGGG 59.967 61.111 15.27 0.00 0.00 6.13
145 146 0.886490 AACTGGAAGAACAGCTGCGG 60.886 55.000 15.27 3.68 42.21 5.69
146 147 0.514691 GAACTGGAAGAACAGCTGCG 59.485 55.000 15.27 0.00 42.21 5.18
147 148 0.514691 CGAACTGGAAGAACAGCTGC 59.485 55.000 15.27 0.00 42.21 5.25
148 149 0.514691 GCGAACTGGAAGAACAGCTG 59.485 55.000 13.48 13.48 42.21 4.24
149 150 0.946221 CGCGAACTGGAAGAACAGCT 60.946 55.000 0.00 0.00 42.21 4.24
150 151 1.493311 CGCGAACTGGAAGAACAGC 59.507 57.895 0.00 0.00 42.21 4.40
151 152 0.319555 TCCGCGAACTGGAAGAACAG 60.320 55.000 8.23 0.00 44.03 3.16
152 153 0.599204 GTCCGCGAACTGGAAGAACA 60.599 55.000 8.23 0.00 37.23 3.18
153 154 1.289800 GGTCCGCGAACTGGAAGAAC 61.290 60.000 8.23 0.00 37.23 3.01
154 155 1.005394 GGTCCGCGAACTGGAAGAA 60.005 57.895 8.23 0.00 37.23 2.52
155 156 1.874345 GAGGTCCGCGAACTGGAAGA 61.874 60.000 8.23 0.00 37.23 2.87
156 157 1.446272 GAGGTCCGCGAACTGGAAG 60.446 63.158 8.23 0.00 37.23 3.46
157 158 2.154798 CTGAGGTCCGCGAACTGGAA 62.155 60.000 8.23 0.00 37.23 3.53
158 159 2.599281 TGAGGTCCGCGAACTGGA 60.599 61.111 8.23 0.00 25.20 3.86
159 160 2.125912 CTGAGGTCCGCGAACTGG 60.126 66.667 8.23 0.00 25.20 4.00
160 161 1.153939 CTCTGAGGTCCGCGAACTG 60.154 63.158 8.23 0.00 25.20 3.16
161 162 1.587933 GACTCTGAGGTCCGCGAACT 61.588 60.000 8.23 0.61 29.20 3.01
162 163 1.153997 GACTCTGAGGTCCGCGAAC 60.154 63.158 8.23 0.00 0.00 3.95
163 164 2.341101 GGACTCTGAGGTCCGCGAA 61.341 63.158 8.23 0.00 44.94 4.70
164 165 2.750637 GGACTCTGAGGTCCGCGA 60.751 66.667 8.23 0.00 44.94 5.87
169 170 0.251832 TGGGTCTGGACTCTGAGGTC 60.252 60.000 9.85 4.40 35.66 3.85
170 171 0.191064 TTGGGTCTGGACTCTGAGGT 59.809 55.000 9.85 0.00 31.68 3.85
171 172 0.901124 CTTGGGTCTGGACTCTGAGG 59.099 60.000 9.85 0.00 31.68 3.86
172 173 1.274728 CACTTGGGTCTGGACTCTGAG 59.725 57.143 2.45 2.45 31.68 3.35
173 174 1.342074 CACTTGGGTCTGGACTCTGA 58.658 55.000 2.19 0.00 31.68 3.27
174 175 0.321122 GCACTTGGGTCTGGACTCTG 60.321 60.000 2.19 0.00 31.68 3.35
175 176 0.472734 AGCACTTGGGTCTGGACTCT 60.473 55.000 2.19 0.00 31.68 3.24
176 177 0.036858 GAGCACTTGGGTCTGGACTC 60.037 60.000 0.67 0.00 40.87 3.36
177 178 2.062070 GAGCACTTGGGTCTGGACT 58.938 57.895 0.67 0.00 40.87 3.85
178 179 4.703703 GAGCACTTGGGTCTGGAC 57.296 61.111 0.00 0.00 40.87 4.02
183 184 2.841442 AAGTACAGAGCACTTGGGTC 57.159 50.000 0.00 0.00 44.43 4.46
184 185 2.028020 GCTAAGTACAGAGCACTTGGGT 60.028 50.000 12.71 0.00 36.88 4.51
185 186 2.028112 TGCTAAGTACAGAGCACTTGGG 60.028 50.000 15.52 0.00 43.64 4.12
186 187 3.319137 TGCTAAGTACAGAGCACTTGG 57.681 47.619 15.52 0.00 43.64 3.61
192 193 5.776173 TCCTCTTATGCTAAGTACAGAGC 57.224 43.478 11.11 11.11 39.25 4.09
193 194 6.322712 ACCTTCCTCTTATGCTAAGTACAGAG 59.677 42.308 0.00 0.00 0.00 3.35
194 195 6.195700 ACCTTCCTCTTATGCTAAGTACAGA 58.804 40.000 0.00 0.00 0.00 3.41
195 196 6.472686 ACCTTCCTCTTATGCTAAGTACAG 57.527 41.667 0.00 0.00 0.00 2.74
196 197 6.040616 GCTACCTTCCTCTTATGCTAAGTACA 59.959 42.308 0.00 0.00 0.00 2.90
197 198 6.265876 AGCTACCTTCCTCTTATGCTAAGTAC 59.734 42.308 0.00 0.00 0.00 2.73
198 199 6.374588 AGCTACCTTCCTCTTATGCTAAGTA 58.625 40.000 0.00 0.00 0.00 2.24
199 200 5.212745 AGCTACCTTCCTCTTATGCTAAGT 58.787 41.667 0.00 0.00 0.00 2.24
200 201 5.799827 AGCTACCTTCCTCTTATGCTAAG 57.200 43.478 0.00 0.00 0.00 2.18
201 202 5.244178 GCTAGCTACCTTCCTCTTATGCTAA 59.756 44.000 7.70 0.00 32.49 3.09
202 203 4.767928 GCTAGCTACCTTCCTCTTATGCTA 59.232 45.833 7.70 0.00 0.00 3.49
203 204 3.576550 GCTAGCTACCTTCCTCTTATGCT 59.423 47.826 7.70 0.00 0.00 3.79
204 205 3.576550 AGCTAGCTACCTTCCTCTTATGC 59.423 47.826 17.69 0.00 0.00 3.14
205 206 6.007703 ACTAGCTAGCTACCTTCCTCTTATG 58.992 44.000 20.67 8.58 0.00 1.90
206 207 6.208840 ACTAGCTAGCTACCTTCCTCTTAT 57.791 41.667 20.67 0.00 0.00 1.73
207 208 5.649970 ACTAGCTAGCTACCTTCCTCTTA 57.350 43.478 20.67 0.00 0.00 2.10
208 209 4.529716 ACTAGCTAGCTACCTTCCTCTT 57.470 45.455 20.67 0.00 0.00 2.85
209 210 4.661709 ACTACTAGCTAGCTACCTTCCTCT 59.338 45.833 20.67 0.00 0.00 3.69
210 211 4.758165 CACTACTAGCTAGCTACCTTCCTC 59.242 50.000 20.67 0.00 0.00 3.71
211 212 4.166531 ACACTACTAGCTAGCTACCTTCCT 59.833 45.833 20.67 0.28 0.00 3.36
212 213 4.463070 ACACTACTAGCTAGCTACCTTCC 58.537 47.826 20.67 0.00 0.00 3.46
213 214 5.221087 CCAACACTACTAGCTAGCTACCTTC 60.221 48.000 20.67 0.00 0.00 3.46
214 215 4.645588 CCAACACTACTAGCTAGCTACCTT 59.354 45.833 20.67 10.21 0.00 3.50
215 216 4.208746 CCAACACTACTAGCTAGCTACCT 58.791 47.826 20.67 10.89 0.00 3.08
216 217 3.952967 ACCAACACTACTAGCTAGCTACC 59.047 47.826 20.67 0.00 0.00 3.18
217 218 4.734108 GCACCAACACTACTAGCTAGCTAC 60.734 50.000 20.67 2.55 0.00 3.58
218 219 3.380637 GCACCAACACTACTAGCTAGCTA 59.619 47.826 22.85 22.85 0.00 3.32
219 220 2.166664 GCACCAACACTACTAGCTAGCT 59.833 50.000 23.12 23.12 0.00 3.32
220 221 2.094182 TGCACCAACACTACTAGCTAGC 60.094 50.000 20.91 6.62 0.00 3.42
221 222 3.444034 TCTGCACCAACACTACTAGCTAG 59.556 47.826 19.44 19.44 0.00 3.42
222 223 3.427573 TCTGCACCAACACTACTAGCTA 58.572 45.455 0.00 0.00 0.00 3.32
223 224 2.248248 TCTGCACCAACACTACTAGCT 58.752 47.619 0.00 0.00 0.00 3.32
224 225 2.743636 TCTGCACCAACACTACTAGC 57.256 50.000 0.00 0.00 0.00 3.42
225 226 5.324784 TGTATCTGCACCAACACTACTAG 57.675 43.478 0.00 0.00 0.00 2.57
226 227 5.932619 ATGTATCTGCACCAACACTACTA 57.067 39.130 0.00 0.00 0.00 1.82
227 228 4.826274 ATGTATCTGCACCAACACTACT 57.174 40.909 0.00 0.00 0.00 2.57
228 229 5.416083 TGTATGTATCTGCACCAACACTAC 58.584 41.667 0.00 0.00 0.00 2.73
229 230 5.669164 TGTATGTATCTGCACCAACACTA 57.331 39.130 0.00 0.00 0.00 2.74
230 231 4.551702 TGTATGTATCTGCACCAACACT 57.448 40.909 0.00 0.00 0.00 3.55
231 232 6.018751 CAGTATGTATGTATCTGCACCAACAC 60.019 42.308 0.00 0.00 0.00 3.32
232 233 6.048509 CAGTATGTATGTATCTGCACCAACA 58.951 40.000 0.00 0.00 0.00 3.33
233 234 6.530913 CAGTATGTATGTATCTGCACCAAC 57.469 41.667 0.00 0.00 0.00 3.77
250 251 1.059122 CGCAGCGTACACAACAGTATG 59.941 52.381 6.65 0.00 46.00 2.39
251 252 1.346365 CGCAGCGTACACAACAGTAT 58.654 50.000 6.65 0.00 0.00 2.12
252 253 2.803979 CGCAGCGTACACAACAGTA 58.196 52.632 6.65 0.00 0.00 2.74
253 254 3.625232 CGCAGCGTACACAACAGT 58.375 55.556 6.65 0.00 0.00 3.55
266 267 0.025001 CAAGGAATTCGTACGCGCAG 59.975 55.000 11.24 2.42 38.14 5.18
267 268 0.388778 TCAAGGAATTCGTACGCGCA 60.389 50.000 11.24 0.00 38.14 6.09
268 269 0.717224 TTCAAGGAATTCGTACGCGC 59.283 50.000 11.24 0.00 38.14 6.86
269 270 3.150731 GTTTTCAAGGAATTCGTACGCG 58.849 45.455 11.24 3.53 39.92 6.01
270 271 4.136517 TGTTTTCAAGGAATTCGTACGC 57.863 40.909 11.24 0.00 0.00 4.42
271 272 7.617533 AATTTGTTTTCAAGGAATTCGTACG 57.382 32.000 9.53 9.53 41.09 3.67
278 279 9.019764 CGCGATATTAATTTGTTTTCAAGGAAT 57.980 29.630 0.00 0.00 41.09 3.01
279 280 7.008810 GCGCGATATTAATTTGTTTTCAAGGAA 59.991 33.333 12.10 0.00 41.09 3.36
280 281 6.470877 GCGCGATATTAATTTGTTTTCAAGGA 59.529 34.615 12.10 0.00 41.09 3.36
281 282 6.557711 CGCGCGATATTAATTTGTTTTCAAGG 60.558 38.462 28.94 0.00 41.09 3.61
282 283 6.021782 ACGCGCGATATTAATTTGTTTTCAAG 60.022 34.615 39.36 0.00 41.09 3.02
283 284 5.795939 ACGCGCGATATTAATTTGTTTTCAA 59.204 32.000 39.36 0.00 38.10 2.69
284 285 5.226154 CACGCGCGATATTAATTTGTTTTCA 59.774 36.000 39.36 0.00 0.00 2.69
285 286 5.449748 TCACGCGCGATATTAATTTGTTTTC 59.550 36.000 39.36 0.00 0.00 2.29
286 287 5.226360 GTCACGCGCGATATTAATTTGTTTT 59.774 36.000 39.36 4.34 0.00 2.43
287 288 4.726704 GTCACGCGCGATATTAATTTGTTT 59.273 37.500 39.36 5.15 0.00 2.83
288 289 4.201734 TGTCACGCGCGATATTAATTTGTT 60.202 37.500 39.36 5.70 0.00 2.83
289 290 3.307512 TGTCACGCGCGATATTAATTTGT 59.692 39.130 39.36 5.95 0.00 2.83
290 291 3.653113 GTGTCACGCGCGATATTAATTTG 59.347 43.478 39.36 20.76 0.00 2.32
291 292 3.554324 AGTGTCACGCGCGATATTAATTT 59.446 39.130 39.36 7.53 0.00 1.82
292 293 3.120792 AGTGTCACGCGCGATATTAATT 58.879 40.909 39.36 8.45 0.00 1.40
293 294 2.739292 AGTGTCACGCGCGATATTAAT 58.261 42.857 39.36 14.57 0.00 1.40
294 295 2.197792 AGTGTCACGCGCGATATTAA 57.802 45.000 39.36 13.68 0.00 1.40
295 296 2.912366 CTAGTGTCACGCGCGATATTA 58.088 47.619 39.36 18.19 0.00 0.98
296 297 1.755161 CTAGTGTCACGCGCGATATT 58.245 50.000 39.36 11.73 0.00 1.28
297 298 0.660595 GCTAGTGTCACGCGCGATAT 60.661 55.000 39.36 12.20 0.00 1.63
298 299 1.298116 GCTAGTGTCACGCGCGATA 60.298 57.895 39.36 21.10 0.00 2.92
299 300 2.579787 GCTAGTGTCACGCGCGAT 60.580 61.111 39.36 18.46 0.00 4.58
300 301 4.771356 GGCTAGTGTCACGCGCGA 62.771 66.667 39.36 13.15 0.00 5.87
305 306 2.852495 AATGGCCGGCTAGTGTCACG 62.852 60.000 28.56 0.00 0.00 4.35
306 307 1.078426 AATGGCCGGCTAGTGTCAC 60.078 57.895 28.56 7.32 0.00 3.67
307 308 1.078497 CAATGGCCGGCTAGTGTCA 60.078 57.895 29.28 17.10 0.00 3.58
308 309 2.472909 GCAATGGCCGGCTAGTGTC 61.473 63.158 35.19 25.17 0.00 3.67
309 310 2.438434 GCAATGGCCGGCTAGTGT 60.438 61.111 35.19 14.24 0.00 3.55
336 337 5.446741 GGCTTAACTCGATCGCACATAAAAA 60.447 40.000 11.09 0.00 0.00 1.94
337 338 4.033587 GGCTTAACTCGATCGCACATAAAA 59.966 41.667 11.09 0.00 0.00 1.52
338 339 3.554324 GGCTTAACTCGATCGCACATAAA 59.446 43.478 11.09 0.00 0.00 1.40
339 340 3.120792 GGCTTAACTCGATCGCACATAA 58.879 45.455 11.09 6.31 0.00 1.90
340 341 2.361119 AGGCTTAACTCGATCGCACATA 59.639 45.455 11.09 0.00 0.00 2.29
341 342 1.137086 AGGCTTAACTCGATCGCACAT 59.863 47.619 11.09 0.00 0.00 3.21
342 343 0.530744 AGGCTTAACTCGATCGCACA 59.469 50.000 11.09 0.00 0.00 4.57
343 344 1.324736 CAAGGCTTAACTCGATCGCAC 59.675 52.381 11.09 0.00 0.00 5.34
344 345 1.203758 TCAAGGCTTAACTCGATCGCA 59.796 47.619 11.09 0.00 0.00 5.10
345 346 1.922570 TCAAGGCTTAACTCGATCGC 58.077 50.000 11.09 0.00 0.00 4.58
346 347 4.112634 TGAATCAAGGCTTAACTCGATCG 58.887 43.478 9.36 9.36 0.00 3.69
347 348 7.148641 TCTATGAATCAAGGCTTAACTCGATC 58.851 38.462 0.00 0.00 0.00 3.69
348 349 7.055667 TCTATGAATCAAGGCTTAACTCGAT 57.944 36.000 0.00 0.00 0.00 3.59
349 350 6.461648 CCTCTATGAATCAAGGCTTAACTCGA 60.462 42.308 0.00 0.00 0.00 4.04
350 351 5.694006 CCTCTATGAATCAAGGCTTAACTCG 59.306 44.000 0.00 0.00 0.00 4.18
351 352 6.587273 ACCTCTATGAATCAAGGCTTAACTC 58.413 40.000 0.00 0.00 31.79 3.01
352 353 6.567602 ACCTCTATGAATCAAGGCTTAACT 57.432 37.500 0.00 0.00 31.79 2.24
353 354 6.425417 GCTACCTCTATGAATCAAGGCTTAAC 59.575 42.308 0.00 0.00 31.79 2.01
354 355 6.525629 GCTACCTCTATGAATCAAGGCTTAA 58.474 40.000 0.00 0.00 31.79 1.85
355 356 5.279006 CGCTACCTCTATGAATCAAGGCTTA 60.279 44.000 0.00 0.00 31.79 3.09
356 357 4.502259 CGCTACCTCTATGAATCAAGGCTT 60.502 45.833 0.00 0.00 31.79 4.35
357 358 3.006323 CGCTACCTCTATGAATCAAGGCT 59.994 47.826 0.00 0.00 31.79 4.58
358 359 3.005897 TCGCTACCTCTATGAATCAAGGC 59.994 47.826 0.00 0.00 31.79 4.35
359 360 4.855715 TCGCTACCTCTATGAATCAAGG 57.144 45.455 0.00 0.00 34.94 3.61
360 361 4.985409 GGTTCGCTACCTCTATGAATCAAG 59.015 45.833 0.00 0.00 44.10 3.02
361 362 4.945246 GGTTCGCTACCTCTATGAATCAA 58.055 43.478 0.00 0.00 44.10 2.57
362 363 4.585955 GGTTCGCTACCTCTATGAATCA 57.414 45.455 0.00 0.00 44.10 2.57
374 375 2.906354 ACCTGATTGATGGTTCGCTAC 58.094 47.619 0.00 0.00 31.62 3.58
375 376 3.704566 ACTACCTGATTGATGGTTCGCTA 59.295 43.478 0.00 0.00 37.74 4.26
376 377 2.501723 ACTACCTGATTGATGGTTCGCT 59.498 45.455 0.00 0.00 37.74 4.93
377 378 2.906354 ACTACCTGATTGATGGTTCGC 58.094 47.619 0.00 0.00 37.74 4.70
378 379 4.032900 CGAAACTACCTGATTGATGGTTCG 59.967 45.833 0.00 0.00 37.74 3.95
379 380 4.935808 ACGAAACTACCTGATTGATGGTTC 59.064 41.667 0.00 0.00 37.74 3.62
380 381 4.906618 ACGAAACTACCTGATTGATGGTT 58.093 39.130 0.00 0.00 37.74 3.67
381 382 4.553330 ACGAAACTACCTGATTGATGGT 57.447 40.909 0.00 0.00 40.12 3.55
382 383 4.094887 CCAACGAAACTACCTGATTGATGG 59.905 45.833 0.00 0.00 0.00 3.51
383 384 4.437390 GCCAACGAAACTACCTGATTGATG 60.437 45.833 0.00 0.00 0.00 3.07
384 385 3.689649 GCCAACGAAACTACCTGATTGAT 59.310 43.478 0.00 0.00 0.00 2.57
385 386 3.071479 GCCAACGAAACTACCTGATTGA 58.929 45.455 0.00 0.00 0.00 2.57
386 387 3.074412 AGCCAACGAAACTACCTGATTG 58.926 45.455 0.00 0.00 0.00 2.67
387 388 3.074412 CAGCCAACGAAACTACCTGATT 58.926 45.455 0.00 0.00 0.00 2.57
388 389 2.301870 TCAGCCAACGAAACTACCTGAT 59.698 45.455 0.00 0.00 0.00 2.90
389 390 1.689813 TCAGCCAACGAAACTACCTGA 59.310 47.619 0.00 0.00 0.00 3.86
390 391 2.163818 TCAGCCAACGAAACTACCTG 57.836 50.000 0.00 0.00 0.00 4.00
391 392 2.876550 GTTTCAGCCAACGAAACTACCT 59.123 45.455 8.19 0.00 45.64 3.08
392 393 3.263602 GTTTCAGCCAACGAAACTACC 57.736 47.619 8.19 0.00 45.64 3.18
397 398 3.729462 CGAAGTTGTTTCAGCCAACGAAA 60.729 43.478 0.00 0.00 45.31 3.46
398 399 2.223157 CGAAGTTGTTTCAGCCAACGAA 60.223 45.455 0.00 0.00 45.31 3.85
399 400 1.329292 CGAAGTTGTTTCAGCCAACGA 59.671 47.619 0.00 0.00 45.31 3.85
400 401 1.596954 CCGAAGTTGTTTCAGCCAACG 60.597 52.381 0.00 0.00 45.31 4.10
401 402 1.269051 CCCGAAGTTGTTTCAGCCAAC 60.269 52.381 0.00 0.00 41.94 3.77
402 403 1.028905 CCCGAAGTTGTTTCAGCCAA 58.971 50.000 0.00 0.00 35.43 4.52
403 404 0.106918 ACCCGAAGTTGTTTCAGCCA 60.107 50.000 0.00 0.00 35.43 4.75
404 405 0.591659 GACCCGAAGTTGTTTCAGCC 59.408 55.000 0.00 0.00 35.43 4.85
405 406 1.264288 CTGACCCGAAGTTGTTTCAGC 59.736 52.381 0.00 0.00 35.43 4.26
406 407 2.544267 GACTGACCCGAAGTTGTTTCAG 59.456 50.000 0.00 0.00 35.43 3.02
407 408 2.557317 GACTGACCCGAAGTTGTTTCA 58.443 47.619 0.00 0.00 35.43 2.69
408 409 1.525619 CGACTGACCCGAAGTTGTTTC 59.474 52.381 0.00 0.00 0.00 2.78
409 410 1.137479 TCGACTGACCCGAAGTTGTTT 59.863 47.619 0.00 0.00 32.64 2.83
410 411 0.748450 TCGACTGACCCGAAGTTGTT 59.252 50.000 0.00 0.00 32.64 2.83
411 412 0.031721 GTCGACTGACCCGAAGTTGT 59.968 55.000 8.70 0.00 39.30 3.32
412 413 0.314302 AGTCGACTGACCCGAAGTTG 59.686 55.000 19.30 0.00 46.74 3.16
413 414 0.314302 CAGTCGACTGACCCGAAGTT 59.686 55.000 36.73 0.00 46.74 2.66
414 415 1.957562 CAGTCGACTGACCCGAAGT 59.042 57.895 36.73 0.00 46.74 3.01
415 416 4.870305 CAGTCGACTGACCCGAAG 57.130 61.111 36.73 10.26 46.74 3.79
583 590 6.934645 TCCTCGTGAATTCAATTTGTTCTACT 59.065 34.615 10.35 0.00 0.00 2.57
1323 1346 2.767505 CCTCGCAAGTTCTTGGTACTT 58.232 47.619 13.35 0.00 36.31 2.24
1379 1402 1.565390 CCCAAGGACCTCATCAGGCA 61.565 60.000 0.00 0.00 45.05 4.75
1453 1476 2.124570 AAGATCGCGCAGGCCATT 60.125 55.556 8.75 0.00 35.02 3.16
1772 1795 1.868498 CGAAGGCAACGAACTAACCAA 59.132 47.619 0.00 0.00 46.39 3.67
1774 1797 1.505425 ACGAAGGCAACGAACTAACC 58.495 50.000 9.97 0.00 46.39 2.85
1785 1808 1.013596 CCAATATCGCAACGAAGGCA 58.986 50.000 0.00 0.00 39.99 4.75
1799 1822 0.793861 GACGTTCTTGCGCACCAATA 59.206 50.000 11.12 0.00 34.88 1.90
1818 1841 1.923204 CCTCAACAAGCTTCTCGATCG 59.077 52.381 9.36 9.36 0.00 3.69
1830 1853 3.601435 TCGTTCAAGAACACCTCAACAA 58.399 40.909 12.86 0.00 41.20 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.