AutoCloner

Multiple sequence alignment - TraesCS7D01G254300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G254300	chr7D	100.000	2818	0	0	1	2818	231258488	231261305	0.000000e+00	5204
1	TraesCS7D01G254300	chr7D	86.098	410	55	2	1	408	253157557	253157966	9.270000e-120	440
2	TraesCS7D01G254300	chr7D	93.011	186	12	1	413	598	530408260	530408076	1.290000e-68	270
3	TraesCS7D01G254300	chr7A	94.779	1762	68	8	598	2345	244472059	244473810	0.000000e+00	2723
4	TraesCS7D01G254300	chr7A	85.366	410	58	2	1	408	37830467	37830058	9.330000e-115	424
5	TraesCS7D01G254300	chr7B	93.318	853	45	7	588	1435	202774484	202775329	0.000000e+00	1249
6	TraesCS7D01G254300	chr7B	93.506	539	31	4	1420	1954	202775342	202775880	0.000000e+00	798
7	TraesCS7D01G254300	chr7B	88.861	404	27	5	1942	2344	202775899	202776285	5.460000e-132	481
8	TraesCS7D01G254300	chr7B	85.990	414	48	8	1	408	399873413	399873822	4.310000e-118	435
9	TraesCS7D01G254300	chr7B	92.442	172	6	3	2654	2818	202776573	202776744	3.630000e-59	239
10	TraesCS7D01G254300	chr7B	90.323	93	8	1	2571	2662	107564802	107564710	1.370000e-23	121
11	TraesCS7D01G254300	chr7B	89.109	101	6	5	2567	2664	592346287	592346385	1.370000e-23	121
12	TraesCS7D01G254300	chr6A	88.780	410	44	2	1	408	567346672	567347081	4.190000e-138	501
13	TraesCS7D01G254300	chr6A	92.941	85	5	1	2574	2657	93285704	93285788	3.810000e-24	122
14	TraesCS7D01G254300	chr6A	88.660	97	10	1	2563	2658	591741935	591742031	1.770000e-22	117
15	TraesCS7D01G254300	chr6A	86.538	104	11	3	2557	2657	287115346	287115449	8.250000e-21	111
16	TraesCS7D01G254300	chr6A	85.714	105	12	3	2567	2669	613698904	613699007	1.070000e-19	108
17	TraesCS7D01G254300	chr2A	86.585	410	53	2	1	408	728027352	728027761	4.280000e-123	451
18	TraesCS7D01G254300	chr2A	91.623	191	14	2	413	602	485395869	485396058	2.150000e-66	263
19	TraesCS7D01G254300	chr2A	92.045	88	6	1	2571	2657	145199965	145199878	3.810000e-24	122
20	TraesCS7D01G254300	chr2A	90.323	93	7	2	2570	2661	694863715	694863806	1.370000e-23	121
21	TraesCS7D01G254300	chr2D	85.610	410	57	2	1	408	593229790	593230199	2.010000e-116	429
22	TraesCS7D01G254300	chr5A	85.504	407	57	2	1	405	404219395	404219801	9.330000e-115	424
23	TraesCS7D01G254300	chr3B	85.330	409	58	2	1	408	651532823	651532416	3.360000e-114	422
24	TraesCS7D01G254300	chr6D	85.401	411	52	5	1	408	166772673	166772268	1.210000e-113	420
25	TraesCS7D01G254300	chr6D	92.513	187	14	0	412	598	54491402	54491216	4.630000e-68	268
26	TraesCS7D01G254300	chr6D	89.362	94	9	1	2565	2657	245267655	245267748	1.770000e-22	117
27	TraesCS7D01G254300	chr6D	90.000	90	7	2	2571	2658	401777683	401777772	6.380000e-22	115
28	TraesCS7D01G254300	chr6D	90.588	85	7	1	2574	2657	427344855	427344939	8.250000e-21	111
29	TraesCS7D01G254300	chr6D	89.535	86	8	1	2574	2658	91845419	91845504	1.070000e-19	108
30	TraesCS7D01G254300	chr6D	89.535	86	8	1	2573	2657	461690120	461690205	1.070000e-19	108
31	TraesCS7D01G254300	chr5D	93.011	186	13	0	413	598	549921372	549921557	3.580000e-69	272
32	TraesCS7D01G254300	chr5D	92.553	188	14	0	412	599	542620343	542620156	1.290000e-68	270
33	TraesCS7D01G254300	chr5D	90.909	88	7	1	2571	2657	37140396	37140309	1.770000e-22	117
34	TraesCS7D01G254300	chr5D	90.909	88	7	1	2571	2657	350331952	350331865	1.770000e-22	117
35	TraesCS7D01G254300	chr5D	89.888	89	7	2	2571	2657	540267741	540267653	2.290000e-21	113
36	TraesCS7D01G254300	chr5D	88.298	94	10	1	2566	2658	52603982	52603889	8.250000e-21	111
37	TraesCS7D01G254300	chr4D	92.593	189	14	0	412	600	320046490	320046302	3.580000e-69	272
38	TraesCS7D01G254300	chr4D	89.362	94	9	1	2571	2663	169119985	169119892	1.770000e-22	117
39	TraesCS7D01G254300	chr4D	90.698	86	7	1	2574	2658	18692702	18692617	2.290000e-21	113
40	TraesCS7D01G254300	chr4D	90.698	86	7	1	2574	2658	493742438	493742353	2.290000e-21	113
41	TraesCS7D01G254300	chr4D	88.043	92	10	1	2573	2663	379147193	379147284	1.070000e-19	108
42	TraesCS7D01G254300	chr1D	92.593	189	14	0	412	600	398875003	398874815	3.580000e-69	272
43	TraesCS7D01G254300	chr1D	90.217	92	7	2	2571	2660	406664976	406665067	4.930000e-23	119
44	TraesCS7D01G254300	chr1D	90.805	87	6	1	2583	2667	276822982	276823068	6.380000e-22	115
45	TraesCS7D01G254300	chr4A	92.593	189	13	1	413	600	575178569	575178757	1.290000e-68	270
46	TraesCS7D01G254300	chr3A	92.593	189	13	1	413	600	735847314	735847502	1.290000e-68	270
47	TraesCS7D01G254300	chr3A	92.135	89	6	1	2573	2660	22230720	22230632	1.060000e-24	124
48	TraesCS7D01G254300	chr3A	88.660	97	9	2	2562	2657	637283340	637283435	1.770000e-22	117
49	TraesCS7D01G254300	chr1B	92.045	88	6	1	2571	2657	151363744	151363657	3.810000e-24	122
50	TraesCS7D01G254300	chr1B	89.362	94	9	1	2573	2665	371141104	371141197	1.770000e-22	117
51	TraesCS7D01G254300	chr1B	86.538	104	11	3	2557	2658	22881864	22881966	8.250000e-21	111
52	TraesCS7D01G254300	chr6B	90.323	93	5	4	2573	2663	198224141	198224051	4.930000e-23	119
53	TraesCS7D01G254300	chr6B	90.323	93	6	3	2570	2661	472612148	472612058	4.930000e-23	119
54	TraesCS7D01G254300	chr4B	91.860	86	6	1	2573	2657	418517385	418517470	4.930000e-23	119
55	TraesCS7D01G254300	chrUn	88.000	100	10	2	2568	2666	29813961	29814059	1.770000e-22	117
56	TraesCS7D01G254300	chrUn	90.805	87	4	4	2574	2657	471786190	471786105	2.290000e-21	113
57	TraesCS7D01G254300	chrUn	89.535	86	7	2	2574	2658	35125963	35125879	1.070000e-19	108
58	TraesCS7D01G254300	chrUn	89.535	86	8	1	2572	2656	37403240	37403325	1.070000e-19	108
59	TraesCS7D01G254300	chrUn	89.412	85	8	1	2574	2657	241299993	241299909	3.840000e-19	106
60	TraesCS7D01G254300	chrUn	89.412	85	8	1	2574	2657	317310227	317310143	3.840000e-19	106
61	TraesCS7D01G254300	chrUn	89.412	85	8	1	2574	2657	333415758	333415674	3.840000e-19	106
62	TraesCS7D01G254300	chrUn	88.506	87	9	1	2574	2659	23744027	23744113	1.380000e-18	104
63	TraesCS7D01G254300	chrUn	88.506	87	9	1	2574	2659	31618544	31618458	1.380000e-18	104
64	TraesCS7D01G254300	chrUn	86.957	92	10	2	2574	2664	297720441	297720351	4.970000e-18	102
65	TraesCS7D01G254300	chr1A	90.698	86	7	1	2573	2657	95850276	95850361	2.290000e-21	113

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G254300	chr7D	231258488	231261305	2817	False	5204.00	5204	100.00000	1	2818	1	chr7D.!!$F1	2817
1	TraesCS7D01G254300	chr7A	244472059	244473810	1751	False	2723.00	2723	94.77900	598	2345	1	chr7A.!!$F1	1747
2	TraesCS7D01G254300	chr7B	202774484	202776744	2260	False	691.75	1249	92.03175	588	2818	4	chr7B.!!$F3	2230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
351	352	0.027586	GATTTTCACCGGAATCCGCG	59.972	55.0	17.50	12.18	46.86	6.46	F
363	364	0.035439	AATCCGCGTTGTCCCAATCT	60.035	50.0	4.92	0.00	0.00	2.40	F
407	408	0.249489	GCCTCGCCATGAAGACGTAT	60.249	55.0	0.00	0.00	0.00	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1769	1816	0.464036	AGGCGCTGTTTATCGGATCA	59.536	50.0	7.64	0.00	2.92	R
1778	1825	0.682852	TGTAGTGGTAGGCGCTGTTT	59.317	50.0	7.64	0.00	2.83	R
2212	2295	1.100510	GCCCTTCGTATTTTGGGTCC	58.899	55.0	0.00	41.59	4.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	2.672651	CGCCAGACAATGCCACCA	60.673	61.111	0.00	0.00	0.00	4.17
18	19	2.048023	CGCCAGACAATGCCACCAT	61.048	57.895	0.00	0.00	0.00	3.55
19	20	1.811860	GCCAGACAATGCCACCATC	59.188	57.895	0.00	0.00	0.00	3.51
20	21	1.669999	GCCAGACAATGCCACCATCC	61.670	60.000	0.00	0.00	0.00	3.51
21	22	0.033796	CCAGACAATGCCACCATCCT	60.034	55.000	0.00	0.00	0.00	3.24
22	23	1.100510	CAGACAATGCCACCATCCTG	58.899	55.000	0.00	0.00	0.00	3.86
23	24	0.682209	AGACAATGCCACCATCCTGC	60.682	55.000	0.00	0.00	0.00	4.85
24	25	0.966875	GACAATGCCACCATCCTGCA	60.967	55.000	0.00	0.00	39.68	4.41
25	26	1.252904	ACAATGCCACCATCCTGCAC	61.253	55.000	0.00	0.00	37.92	4.57
26	27	2.048023	AATGCCACCATCCTGCACG	61.048	57.895	0.00	0.00	37.92	5.34
27	28	2.769652	AATGCCACCATCCTGCACGT	62.770	55.000	0.00	0.00	37.92	4.49
28	29	1.909459	ATGCCACCATCCTGCACGTA	61.909	55.000	0.00	0.00	37.92	3.57
29	30	1.153168	GCCACCATCCTGCACGTAT	60.153	57.895	0.00	0.00	0.00	3.06
30	31	1.160329	GCCACCATCCTGCACGTATC	61.160	60.000	0.00	0.00	0.00	2.24
31	32	0.532862	CCACCATCCTGCACGTATCC	60.533	60.000	0.00	0.00	0.00	2.59
32	33	0.177836	CACCATCCTGCACGTATCCA	59.822	55.000	0.00	0.00	0.00	3.41
33	34	1.131638	ACCATCCTGCACGTATCCAT	58.868	50.000	0.00	0.00	0.00	3.41
34	35	1.070758	ACCATCCTGCACGTATCCATC	59.929	52.381	0.00	0.00	0.00	3.51
35	36	1.609061	CCATCCTGCACGTATCCATCC	60.609	57.143	0.00	0.00	0.00	3.51
36	37	1.070601	CATCCTGCACGTATCCATCCA	59.929	52.381	0.00	0.00	0.00	3.41
37	38	0.464036	TCCTGCACGTATCCATCCAC	59.536	55.000	0.00	0.00	0.00	4.02
38	39	0.875908	CCTGCACGTATCCATCCACG	60.876	60.000	0.00	0.00	43.63	4.94
43	44	2.297625	CGTATCCATCCACGTGTGC	58.702	57.895	15.65	0.00	33.56	4.57
44	45	1.151777	CGTATCCATCCACGTGTGCC	61.152	60.000	15.65	0.00	33.56	5.01
45	46	0.814010	GTATCCATCCACGTGTGCCC	60.814	60.000	15.65	0.00	0.00	5.36
46	47	1.268283	TATCCATCCACGTGTGCCCA	61.268	55.000	15.65	0.00	0.00	5.36
47	48	1.925285	ATCCATCCACGTGTGCCCAT	61.925	55.000	15.65	0.00	0.00	4.00
48	49	2.114670	CCATCCACGTGTGCCCATC	61.115	63.158	15.65	0.00	0.00	3.51
49	50	1.377072	CATCCACGTGTGCCCATCA	60.377	57.895	15.65	0.00	0.00	3.07
50	51	1.377202	ATCCACGTGTGCCCATCAC	60.377	57.895	15.65	0.00	45.82	3.06
51	52	2.819984	ATCCACGTGTGCCCATCACC	62.820	60.000	15.65	0.00	45.03	4.02
52	53	3.422303	CACGTGTGCCCATCACCG	61.422	66.667	7.58	0.00	45.03	4.94
53	54	3.621805	ACGTGTGCCCATCACCGA	61.622	61.111	10.96	0.00	45.03	4.69
54	55	2.358125	CGTGTGCCCATCACCGAA	60.358	61.111	0.00	0.00	45.03	4.30
55	56	1.963855	CGTGTGCCCATCACCGAAA	60.964	57.895	0.00	0.00	45.03	3.46
56	57	1.579429	GTGTGCCCATCACCGAAAC	59.421	57.895	0.00	0.00	45.03	2.78
57	58	0.889186	GTGTGCCCATCACCGAAACT	60.889	55.000	0.00	0.00	45.03	2.66
58	59	0.605319	TGTGCCCATCACCGAAACTC	60.605	55.000	0.00	0.00	45.03	3.01
59	60	1.002624	TGCCCATCACCGAAACTCC	60.003	57.895	0.00	0.00	0.00	3.85
60	61	2.106683	GCCCATCACCGAAACTCCG	61.107	63.158	0.00	0.00	0.00	4.63
61	62	2.106683	CCCATCACCGAAACTCCGC	61.107	63.158	0.00	0.00	0.00	5.54
62	63	1.375396	CCATCACCGAAACTCCGCA	60.375	57.895	0.00	0.00	0.00	5.69
63	64	1.361668	CCATCACCGAAACTCCGCAG	61.362	60.000	0.00	0.00	0.00	5.18
64	65	0.670546	CATCACCGAAACTCCGCAGT	60.671	55.000	0.00	0.00	0.00	4.40
65	66	0.670546	ATCACCGAAACTCCGCAGTG	60.671	55.000	0.00	0.00	31.06	3.66
66	67	2.665185	ACCGAAACTCCGCAGTGC	60.665	61.111	4.58	4.58	31.06	4.40
67	68	3.423154	CCGAAACTCCGCAGTGCC	61.423	66.667	10.11	0.00	31.06	5.01
68	69	2.664851	CGAAACTCCGCAGTGCCA	60.665	61.111	10.11	0.00	31.06	4.92
69	70	2.034879	CGAAACTCCGCAGTGCCAT	61.035	57.895	10.11	0.00	31.06	4.40
70	71	1.503542	GAAACTCCGCAGTGCCATG	59.496	57.895	10.11	1.85	31.06	3.66
71	72	2.533391	GAAACTCCGCAGTGCCATGC	62.533	60.000	10.11	0.27	42.95	4.06
78	79	3.129502	CAGTGCCATGCCACGGAG	61.130	66.667	0.38	0.00	40.59	4.63
79	80	3.321648	AGTGCCATGCCACGGAGA	61.322	61.111	0.46	0.00	40.59	3.71
80	81	2.124570	GTGCCATGCCACGGAGAT	60.125	61.111	0.00	0.00	0.00	2.75
81	82	2.182842	GTGCCATGCCACGGAGATC	61.183	63.158	0.00	0.00	0.00	2.75
82	83	2.592861	GCCATGCCACGGAGATCC	60.593	66.667	0.00	0.00	0.00	3.36
99	100	2.186903	CGCTATCGGCCTTGTGGT	59.813	61.111	0.00	0.00	37.74	4.16
100	101	1.440060	CGCTATCGGCCTTGTGGTA	59.560	57.895	0.00	0.00	37.74	3.25
101	102	0.597637	CGCTATCGGCCTTGTGGTAG	60.598	60.000	0.00	0.00	37.74	3.18
102	103	0.750850	GCTATCGGCCTTGTGGTAGA	59.249	55.000	0.00	0.00	35.27	2.59
103	104	1.344763	GCTATCGGCCTTGTGGTAGAT	59.655	52.381	0.00	0.00	36.29	1.98
104	105	2.868044	GCTATCGGCCTTGTGGTAGATG	60.868	54.545	0.00	0.00	34.92	2.90
105	106	1.204146	ATCGGCCTTGTGGTAGATGT	58.796	50.000	0.00	0.00	33.06	3.06
106	107	1.855295	TCGGCCTTGTGGTAGATGTA	58.145	50.000	0.00	0.00	35.27	2.29
107	108	2.181125	TCGGCCTTGTGGTAGATGTAA	58.819	47.619	0.00	0.00	35.27	2.41
108	109	2.093869	TCGGCCTTGTGGTAGATGTAAC	60.094	50.000	0.00	0.00	35.27	2.50
109	110	2.354303	CGGCCTTGTGGTAGATGTAACA	60.354	50.000	0.00	0.00	35.27	2.41
110	111	3.007635	GGCCTTGTGGTAGATGTAACAC	58.992	50.000	11.04	11.04	45.83	3.32
111	112	3.007635	GCCTTGTGGTAGATGTAACACC	58.992	50.000	14.94	0.00	45.13	4.16
112	113	3.259064	CCTTGTGGTAGATGTAACACCG	58.741	50.000	14.94	6.55	45.13	4.94
113	114	2.373540	TGTGGTAGATGTAACACCGC	57.626	50.000	14.94	1.43	45.13	5.68
114	115	1.897133	TGTGGTAGATGTAACACCGCT	59.103	47.619	14.94	0.00	45.13	5.52
115	116	2.094390	TGTGGTAGATGTAACACCGCTC	60.094	50.000	14.94	0.00	45.13	5.03
116	117	1.479323	TGGTAGATGTAACACCGCTCC	59.521	52.381	0.00	0.00	34.94	4.70
117	118	1.755380	GGTAGATGTAACACCGCTCCT	59.245	52.381	0.00	0.00	0.00	3.69
118	119	2.223758	GGTAGATGTAACACCGCTCCTC	60.224	54.545	0.00	0.00	0.00	3.71
119	120	0.824759	AGATGTAACACCGCTCCTCC	59.175	55.000	0.00	0.00	0.00	4.30
120	121	0.824759	GATGTAACACCGCTCCTCCT	59.175	55.000	0.00	0.00	0.00	3.69
121	122	0.824759	ATGTAACACCGCTCCTCCTC	59.175	55.000	0.00	0.00	0.00	3.71
122	123	0.251653	TGTAACACCGCTCCTCCTCT	60.252	55.000	0.00	0.00	0.00	3.69
123	124	0.896226	GTAACACCGCTCCTCCTCTT	59.104	55.000	0.00	0.00	0.00	2.85
124	125	0.895530	TAACACCGCTCCTCCTCTTG	59.104	55.000	0.00	0.00	0.00	3.02
125	126	1.122019	AACACCGCTCCTCCTCTTGT	61.122	55.000	0.00	0.00	0.00	3.16
126	127	1.216710	CACCGCTCCTCCTCTTGTC	59.783	63.158	0.00	0.00	0.00	3.18
127	128	1.985116	ACCGCTCCTCCTCTTGTCC	60.985	63.158	0.00	0.00	0.00	4.02
128	129	2.726351	CCGCTCCTCCTCTTGTCCC	61.726	68.421	0.00	0.00	0.00	4.46
129	130	2.726351	CGCTCCTCCTCTTGTCCCC	61.726	68.421	0.00	0.00	0.00	4.81
130	131	1.306568	GCTCCTCCTCTTGTCCCCT	60.307	63.158	0.00	0.00	0.00	4.79
131	132	1.334384	GCTCCTCCTCTTGTCCCCTC	61.334	65.000	0.00	0.00	0.00	4.30
132	133	0.689412	CTCCTCCTCTTGTCCCCTCC	60.689	65.000	0.00	0.00	0.00	4.30
133	134	1.081092	CCTCCTCTTGTCCCCTCCA	59.919	63.158	0.00	0.00	0.00	3.86
134	135	0.980231	CCTCCTCTTGTCCCCTCCAG	60.980	65.000	0.00	0.00	0.00	3.86
135	136	1.613630	TCCTCTTGTCCCCTCCAGC	60.614	63.158	0.00	0.00	0.00	4.85
136	137	2.674220	CCTCTTGTCCCCTCCAGCC	61.674	68.421	0.00	0.00	0.00	4.85
137	138	1.920325	CTCTTGTCCCCTCCAGCCA	60.920	63.158	0.00	0.00	0.00	4.75
138	139	1.908340	CTCTTGTCCCCTCCAGCCAG	61.908	65.000	0.00	0.00	0.00	4.85
139	140	3.635268	CTTGTCCCCTCCAGCCAGC	62.635	68.421	0.00	0.00	0.00	4.85
140	141	4.980592	TGTCCCCTCCAGCCAGCA	62.981	66.667	0.00	0.00	0.00	4.41
141	142	4.416738	GTCCCCTCCAGCCAGCAC	62.417	72.222	0.00	0.00	0.00	4.40
142	143	4.664267	TCCCCTCCAGCCAGCACT	62.664	66.667	0.00	0.00	0.00	4.40
143	144	3.655211	CCCCTCCAGCCAGCACTT	61.655	66.667	0.00	0.00	0.00	3.16
144	145	2.360852	CCCTCCAGCCAGCACTTG	60.361	66.667	0.00	0.00	0.00	3.16
145	146	3.060615	CCTCCAGCCAGCACTTGC	61.061	66.667	0.00	0.00	42.49	4.01
158	159	2.533266	GCACTTGCTCCAATACAATGC	58.467	47.619	0.00	0.00	38.21	3.56
159	160	2.736400	GCACTTGCTCCAATACAATGCC	60.736	50.000	0.00	0.00	38.21	4.40
160	161	2.102578	ACTTGCTCCAATACAATGCCC	58.897	47.619	0.00	0.00	0.00	5.36
161	162	1.410153	CTTGCTCCAATACAATGCCCC	59.590	52.381	0.00	0.00	0.00	5.80
162	163	0.334335	TGCTCCAATACAATGCCCCA	59.666	50.000	0.00	0.00	0.00	4.96
163	164	1.035139	GCTCCAATACAATGCCCCAG	58.965	55.000	0.00	0.00	0.00	4.45
164	165	1.696063	CTCCAATACAATGCCCCAGG	58.304	55.000	0.00	0.00	0.00	4.45
165	166	1.215173	CTCCAATACAATGCCCCAGGA	59.785	52.381	0.00	0.00	0.00	3.86
166	167	1.215173	TCCAATACAATGCCCCAGGAG	59.785	52.381	0.00	0.00	0.00	3.69
167	168	1.696063	CAATACAATGCCCCAGGAGG	58.304	55.000	0.00	0.00	0.00	4.30
168	169	1.215173	CAATACAATGCCCCAGGAGGA	59.785	52.381	0.00	0.00	38.24	3.71
169	170	1.607225	ATACAATGCCCCAGGAGGAA	58.393	50.000	0.00	0.00	38.24	3.36
170	171	0.918983	TACAATGCCCCAGGAGGAAG	59.081	55.000	0.00	0.00	38.24	3.46
171	172	0.846427	ACAATGCCCCAGGAGGAAGA	60.846	55.000	0.00	0.00	38.24	2.87
172	173	0.332632	CAATGCCCCAGGAGGAAGAA	59.667	55.000	0.00	0.00	38.24	2.52
173	174	0.332972	AATGCCCCAGGAGGAAGAAC	59.667	55.000	0.00	0.00	38.24	3.01
174	175	0.846427	ATGCCCCAGGAGGAAGAACA	60.846	55.000	0.00	0.00	38.24	3.18
175	176	1.065410	TGCCCCAGGAGGAAGAACAA	61.065	55.000	0.00	0.00	38.24	2.83
176	177	0.609406	GCCCCAGGAGGAAGAACAAC	60.609	60.000	0.00	0.00	38.24	3.32
177	178	0.771127	CCCCAGGAGGAAGAACAACA	59.229	55.000	0.00	0.00	38.24	3.33
178	179	1.355720	CCCCAGGAGGAAGAACAACAT	59.644	52.381	0.00	0.00	38.24	2.71
179	180	2.619074	CCCCAGGAGGAAGAACAACATC	60.619	54.545	0.00	0.00	38.24	3.06
180	181	2.040278	CCCAGGAGGAAGAACAACATCA	59.960	50.000	0.00	0.00	38.24	3.07
181	182	3.498481	CCCAGGAGGAAGAACAACATCAA	60.498	47.826	0.00	0.00	38.24	2.57
182	183	4.144297	CCAGGAGGAAGAACAACATCAAA	58.856	43.478	0.00	0.00	36.89	2.69
183	184	4.217118	CCAGGAGGAAGAACAACATCAAAG	59.783	45.833	0.00	0.00	36.89	2.77
184	185	4.217118	CAGGAGGAAGAACAACATCAAAGG	59.783	45.833	0.00	0.00	0.00	3.11
185	186	3.057245	GGAGGAAGAACAACATCAAAGGC	60.057	47.826	0.00	0.00	0.00	4.35
186	187	3.565307	AGGAAGAACAACATCAAAGGCA	58.435	40.909	0.00	0.00	0.00	4.75
187	188	4.154942	AGGAAGAACAACATCAAAGGCAT	58.845	39.130	0.00	0.00	0.00	4.40
188	189	4.219288	AGGAAGAACAACATCAAAGGCATC	59.781	41.667	0.00	0.00	0.00	3.91
189	190	3.837213	AGAACAACATCAAAGGCATCG	57.163	42.857	0.00	0.00	0.00	3.84
190	191	3.149196	AGAACAACATCAAAGGCATCGT	58.851	40.909	0.00	0.00	0.00	3.73
191	192	3.189287	AGAACAACATCAAAGGCATCGTC	59.811	43.478	0.00	0.00	0.00	4.20
192	193	2.503331	ACAACATCAAAGGCATCGTCA	58.497	42.857	0.00	0.00	0.00	4.35
193	194	3.084039	ACAACATCAAAGGCATCGTCAT	58.916	40.909	0.00	0.00	0.00	3.06
194	195	3.127548	ACAACATCAAAGGCATCGTCATC	59.872	43.478	0.00	0.00	0.00	2.92
195	196	1.935873	ACATCAAAGGCATCGTCATCG	59.064	47.619	0.00	0.00	38.55	3.84
196	197	1.935873	CATCAAAGGCATCGTCATCGT	59.064	47.619	0.00	0.00	38.33	3.73
197	198	1.640428	TCAAAGGCATCGTCATCGTC	58.360	50.000	0.00	0.00	38.33	4.20
198	199	0.652592	CAAAGGCATCGTCATCGTCC	59.347	55.000	0.00	0.00	38.33	4.79
199	200	0.806102	AAAGGCATCGTCATCGTCCG	60.806	55.000	0.00	0.00	38.33	4.79
200	201	1.663379	AAGGCATCGTCATCGTCCGA	61.663	55.000	0.00	0.00	38.33	4.55
201	202	1.007271	GGCATCGTCATCGTCCGAT	60.007	57.895	0.00	0.00	44.07	4.18
202	203	1.004277	GGCATCGTCATCGTCCGATC	61.004	60.000	0.00	0.00	41.54	3.69
203	204	1.004277	GCATCGTCATCGTCCGATCC	61.004	60.000	0.00	0.00	41.54	3.36
204	205	0.726118	CATCGTCATCGTCCGATCCG	60.726	60.000	0.00	5.70	41.54	4.18
205	206	1.853114	ATCGTCATCGTCCGATCCGG	61.853	60.000	14.46	0.00	39.45	5.14
207	208	3.828830	TCGTCATCGTCCGATCCGGTA	62.829	57.143	0.00	0.00	40.94	4.02
214	215	3.616721	CCGATCCGGTAGGCCCAG	61.617	72.222	0.00	0.00	42.73	4.45
215	216	2.520982	CGATCCGGTAGGCCCAGA	60.521	66.667	0.00	0.00	37.47	3.86
216	217	1.908793	CGATCCGGTAGGCCCAGAT	60.909	63.158	0.00	0.00	37.47	2.90
217	218	1.472662	CGATCCGGTAGGCCCAGATT	61.473	60.000	0.00	0.00	37.47	2.40
218	219	0.765510	GATCCGGTAGGCCCAGATTT	59.234	55.000	0.00	0.00	37.47	2.17
219	220	0.474184	ATCCGGTAGGCCCAGATTTG	59.526	55.000	0.00	0.00	37.47	2.32
220	221	1.152963	CCGGTAGGCCCAGATTTGG	60.153	63.158	0.00	0.00	44.60	3.28
237	238	2.768045	GGGTTTCCCCCGGAACAT	59.232	61.111	0.73	0.00	45.80	2.71
238	239	1.379443	GGGTTTCCCCCGGAACATC	60.379	63.158	0.73	0.00	45.80	3.06
239	240	1.379443	GGTTTCCCCCGGAACATCC	60.379	63.158	0.73	0.00	41.87	3.51
240	241	1.379443	GTTTCCCCCGGAACATCCC	60.379	63.158	0.73	0.00	41.87	3.85
250	251	1.571919	GGAACATCCCGATCGAGTTG	58.428	55.000	18.66	11.58	0.00	3.16
251	252	1.136305	GGAACATCCCGATCGAGTTGA	59.864	52.381	18.66	7.84	0.00	3.18
252	253	2.194271	GAACATCCCGATCGAGTTGAC	58.806	52.381	18.66	5.45	0.00	3.18
253	254	0.100682	ACATCCCGATCGAGTTGACG	59.899	55.000	18.66	2.65	0.00	4.35
254	255	0.100682	CATCCCGATCGAGTTGACGT	59.899	55.000	18.66	0.00	34.70	4.34
255	256	0.100682	ATCCCGATCGAGTTGACGTG	59.899	55.000	18.66	0.00	34.70	4.49
256	257	0.956902	TCCCGATCGAGTTGACGTGA	60.957	55.000	18.66	0.00	34.70	4.35
257	258	0.797249	CCCGATCGAGTTGACGTGAC	60.797	60.000	18.66	0.00	34.70	3.67
258	259	0.797249	CCGATCGAGTTGACGTGACC	60.797	60.000	18.66	0.00	34.70	4.02
259	260	0.168348	CGATCGAGTTGACGTGACCT	59.832	55.000	10.26	0.00	34.70	3.85
260	261	1.618861	GATCGAGTTGACGTGACCTG	58.381	55.000	0.00	0.00	34.70	4.00
261	262	0.388649	ATCGAGTTGACGTGACCTGC	60.389	55.000	0.00	0.00	34.70	4.85
262	263	1.299850	CGAGTTGACGTGACCTGCA	60.300	57.895	0.00	0.00	0.00	4.41
263	264	0.874175	CGAGTTGACGTGACCTGCAA	60.874	55.000	0.00	0.00	0.00	4.08
264	265	0.582005	GAGTTGACGTGACCTGCAAC	59.418	55.000	0.00	0.00	40.54	4.17
265	266	1.151777	AGTTGACGTGACCTGCAACG	61.152	55.000	7.09	7.09	43.85	4.10
266	267	1.142097	TTGACGTGACCTGCAACGA	59.858	52.632	15.09	0.00	0.00	3.85
267	268	0.249699	TTGACGTGACCTGCAACGAT	60.250	50.000	15.09	0.24	0.00	3.73
268	269	0.943835	TGACGTGACCTGCAACGATG	60.944	55.000	15.09	0.00	0.00	3.84
269	270	0.666274	GACGTGACCTGCAACGATGA	60.666	55.000	15.09	0.00	0.00	2.92
270	271	0.037326	ACGTGACCTGCAACGATGAT	60.037	50.000	15.09	0.00	0.00	2.45
271	272	0.371301	CGTGACCTGCAACGATGATG	59.629	55.000	2.49	0.00	0.00	3.07
272	273	0.097674	GTGACCTGCAACGATGATGC	59.902	55.000	0.00	0.00	44.08	3.91
273	274	1.026182	TGACCTGCAACGATGATGCC	61.026	55.000	0.00	0.00	43.16	4.40
274	275	0.745845	GACCTGCAACGATGATGCCT	60.746	55.000	0.00	0.00	43.16	4.75
275	276	0.745845	ACCTGCAACGATGATGCCTC	60.746	55.000	0.00	0.00	43.16	4.70
276	277	1.640069	CTGCAACGATGATGCCTCG	59.360	57.895	0.00	0.00	43.16	4.63
277	278	0.807275	CTGCAACGATGATGCCTCGA	60.807	55.000	0.00	0.00	43.16	4.04
278	279	0.807275	TGCAACGATGATGCCTCGAG	60.807	55.000	5.13	5.13	43.16	4.04
279	280	0.528466	GCAACGATGATGCCTCGAGA	60.528	55.000	15.71	0.00	39.38	4.04
280	281	1.926561	CAACGATGATGCCTCGAGAA	58.073	50.000	15.71	1.50	39.38	2.87
281	282	1.857217	CAACGATGATGCCTCGAGAAG	59.143	52.381	15.71	0.00	39.38	2.85
292	293	1.604396	CTCGAGAAGGAAACGACGAC	58.396	55.000	6.58	0.00	32.72	4.34
293	294	0.946528	TCGAGAAGGAAACGACGACA	59.053	50.000	0.00	0.00	0.00	4.35
294	295	1.069432	TCGAGAAGGAAACGACGACAG	60.069	52.381	0.00	0.00	0.00	3.51
295	296	1.069432	CGAGAAGGAAACGACGACAGA	60.069	52.381	0.00	0.00	0.00	3.41
296	297	2.586900	GAGAAGGAAACGACGACAGAG	58.413	52.381	0.00	0.00	0.00	3.35
297	298	1.061485	GAAGGAAACGACGACAGAGC	58.939	55.000	0.00	0.00	0.00	4.09
298	299	0.387929	AAGGAAACGACGACAGAGCA	59.612	50.000	0.00	0.00	0.00	4.26
299	300	0.318784	AGGAAACGACGACAGAGCAC	60.319	55.000	0.00	0.00	0.00	4.40
300	301	1.282930	GGAAACGACGACAGAGCACC	61.283	60.000	0.00	0.00	0.00	5.01
301	302	0.596600	GAAACGACGACAGAGCACCA	60.597	55.000	0.00	0.00	0.00	4.17
302	303	0.874607	AAACGACGACAGAGCACCAC	60.875	55.000	0.00	0.00	0.00	4.16
303	304	2.430921	CGACGACAGAGCACCACC	60.431	66.667	0.00	0.00	0.00	4.61
304	305	2.734591	GACGACAGAGCACCACCA	59.265	61.111	0.00	0.00	0.00	4.17
305	306	1.293498	GACGACAGAGCACCACCAT	59.707	57.895	0.00	0.00	0.00	3.55
306	307	0.737715	GACGACAGAGCACCACCATC	60.738	60.000	0.00	0.00	0.00	3.51
307	308	1.807165	CGACAGAGCACCACCATCG	60.807	63.158	0.00	0.00	0.00	3.84
308	309	1.293498	GACAGAGCACCACCATCGT	59.707	57.895	0.00	0.00	0.00	3.73
309	310	0.737715	GACAGAGCACCACCATCGTC	60.738	60.000	0.00	0.00	0.00	4.20
310	311	1.448540	CAGAGCACCACCATCGTCC	60.449	63.158	0.00	0.00	0.00	4.79
311	312	2.509336	GAGCACCACCATCGTCCG	60.509	66.667	0.00	0.00	0.00	4.79
312	313	4.760047	AGCACCACCATCGTCCGC	62.760	66.667	0.00	0.00	0.00	5.54
314	315	4.386951	CACCACCATCGTCCGCCA	62.387	66.667	0.00	0.00	0.00	5.69
315	316	3.632080	ACCACCATCGTCCGCCAA	61.632	61.111	0.00	0.00	0.00	4.52
316	317	2.819595	CCACCATCGTCCGCCAAG	60.820	66.667	0.00	0.00	0.00	3.61
317	318	2.264480	CACCATCGTCCGCCAAGA	59.736	61.111	0.00	0.00	0.00	3.02
318	319	2.100631	CACCATCGTCCGCCAAGAC	61.101	63.158	0.00	0.00	0.00	3.01
319	320	2.511600	CCATCGTCCGCCAAGACC	60.512	66.667	0.00	0.00	32.91	3.85
320	321	2.885644	CATCGTCCGCCAAGACCG	60.886	66.667	0.00	0.00	32.91	4.79
321	322	4.814294	ATCGTCCGCCAAGACCGC	62.814	66.667	0.00	0.00	32.91	5.68
324	325	4.681978	GTCCGCCAAGACCGCAGT	62.682	66.667	0.00	0.00	0.00	4.40
325	326	4.373116	TCCGCCAAGACCGCAGTC	62.373	66.667	0.00	0.00	43.89	3.51
326	327	4.680237	CCGCCAAGACCGCAGTCA	62.680	66.667	2.32	0.00	46.15	3.41
327	328	3.114616	CGCCAAGACCGCAGTCAG	61.115	66.667	2.32	0.00	46.15	3.51
328	329	2.743928	GCCAAGACCGCAGTCAGG	60.744	66.667	2.32	5.11	46.15	3.86
329	330	2.743928	CCAAGACCGCAGTCAGGC	60.744	66.667	2.32	0.00	46.15	4.85
338	339	3.683581	GCAGTCAGGCGTGATTTTC	57.316	52.632	12.93	0.00	34.36	2.29
339	340	0.874390	GCAGTCAGGCGTGATTTTCA	59.126	50.000	12.93	0.00	34.36	2.69
340	341	1.400242	GCAGTCAGGCGTGATTTTCAC	60.400	52.381	12.93	0.00	43.65	3.18
341	342	1.197721	CAGTCAGGCGTGATTTTCACC	59.802	52.381	12.93	0.00	44.20	4.02
342	343	0.165944	GTCAGGCGTGATTTTCACCG	59.834	55.000	12.93	0.00	44.20	4.94
343	344	0.953471	TCAGGCGTGATTTTCACCGG	60.953	55.000	4.68	0.00	44.20	5.28
344	345	0.953471	CAGGCGTGATTTTCACCGGA	60.953	55.000	9.46	0.00	44.20	5.14
345	346	0.250553	AGGCGTGATTTTCACCGGAA	60.251	50.000	9.46	0.00	44.20	4.30
346	347	0.808755	GGCGTGATTTTCACCGGAAT	59.191	50.000	9.46	0.00	44.20	3.01
347	348	1.202143	GGCGTGATTTTCACCGGAATC	60.202	52.381	9.46	7.64	44.20	2.52
348	349	1.202143	GCGTGATTTTCACCGGAATCC	60.202	52.381	9.46	0.54	44.20	3.01
349	350	1.062002	CGTGATTTTCACCGGAATCCG	59.938	52.381	15.85	15.85	44.20	4.18
350	351	1.091537	TGATTTTCACCGGAATCCGC	58.908	50.000	17.50	0.04	46.86	5.54
351	352	0.027586	GATTTTCACCGGAATCCGCG	59.972	55.000	17.50	12.18	46.86	6.46
352	353	0.675522	ATTTTCACCGGAATCCGCGT	60.676	50.000	17.50	12.87	46.86	6.01
353	354	0.885596	TTTTCACCGGAATCCGCGTT	60.886	50.000	17.50	0.00	46.86	4.84
354	355	1.570347	TTTCACCGGAATCCGCGTTG	61.570	55.000	17.50	12.52	46.86	4.10
355	356	2.718747	TTCACCGGAATCCGCGTTGT	62.719	55.000	17.50	5.78	46.86	3.32
356	357	2.433664	ACCGGAATCCGCGTTGTC	60.434	61.111	17.50	0.00	46.86	3.18
357	358	3.192922	CCGGAATCCGCGTTGTCC	61.193	66.667	17.50	7.26	46.86	4.02
358	359	3.192922	CGGAATCCGCGTTGTCCC	61.193	66.667	9.39	0.00	41.17	4.46
359	360	2.046700	GGAATCCGCGTTGTCCCA	60.047	61.111	4.92	0.00	0.00	4.37
360	361	1.673009	GGAATCCGCGTTGTCCCAA	60.673	57.895	4.92	0.00	0.00	4.12
361	362	1.029947	GGAATCCGCGTTGTCCCAAT	61.030	55.000	4.92	0.00	0.00	3.16
362	363	0.377203	GAATCCGCGTTGTCCCAATC	59.623	55.000	4.92	0.00	0.00	2.67
363	364	0.035439	AATCCGCGTTGTCCCAATCT	60.035	50.000	4.92	0.00	0.00	2.40
364	365	0.462047	ATCCGCGTTGTCCCAATCTC	60.462	55.000	4.92	0.00	0.00	2.75
365	366	2.452813	CCGCGTTGTCCCAATCTCG	61.453	63.158	4.92	0.00	0.00	4.04
366	367	2.785258	GCGTTGTCCCAATCTCGC	59.215	61.111	0.00	0.00	37.17	5.03
367	368	3.081133	CGTTGTCCCAATCTCGCG	58.919	61.111	0.00	0.00	0.00	5.87
368	369	2.452813	CGTTGTCCCAATCTCGCGG	61.453	63.158	6.13	0.00	0.00	6.46
369	370	2.435938	TTGTCCCAATCTCGCGGC	60.436	61.111	6.13	0.00	0.00	6.53
370	371	2.954684	TTGTCCCAATCTCGCGGCT	61.955	57.895	6.13	0.00	0.00	5.52
371	372	2.892425	GTCCCAATCTCGCGGCTG	60.892	66.667	6.13	0.00	0.00	4.85
372	373	3.074369	TCCCAATCTCGCGGCTGA	61.074	61.111	6.13	2.71	0.00	4.26
373	374	2.892425	CCCAATCTCGCGGCTGAC	60.892	66.667	6.13	0.00	0.00	3.51
374	375	2.185350	CCAATCTCGCGGCTGACT	59.815	61.111	6.13	0.00	0.00	3.41
375	376	2.169789	CCAATCTCGCGGCTGACTG	61.170	63.158	6.13	2.65	0.00	3.51
376	377	2.169789	CAATCTCGCGGCTGACTGG	61.170	63.158	6.13	0.00	0.00	4.00
377	378	2.351244	AATCTCGCGGCTGACTGGA	61.351	57.895	6.13	0.00	0.00	3.86
378	379	1.888436	AATCTCGCGGCTGACTGGAA	61.888	55.000	6.13	0.00	0.00	3.53
379	380	1.680522	ATCTCGCGGCTGACTGGAAT	61.681	55.000	6.13	0.00	0.00	3.01
380	381	1.880340	CTCGCGGCTGACTGGAATC	60.880	63.158	6.13	0.00	0.00	2.52
381	382	3.257561	CGCGGCTGACTGGAATCG	61.258	66.667	0.00	0.00	0.00	3.34
382	383	3.567797	GCGGCTGACTGGAATCGC	61.568	66.667	0.00	0.00	36.51	4.58
383	384	2.125552	CGGCTGACTGGAATCGCA	60.126	61.111	0.00	0.00	0.00	5.10
384	385	2.456119	CGGCTGACTGGAATCGCAC	61.456	63.158	0.00	0.00	0.00	5.34
385	386	1.375908	GGCTGACTGGAATCGCACA	60.376	57.895	0.00	0.00	0.00	4.57
386	387	1.364626	GGCTGACTGGAATCGCACAG	61.365	60.000	0.00	0.00	40.48	3.66
387	388	0.390340	GCTGACTGGAATCGCACAGA	60.390	55.000	0.00	0.00	38.09	3.41
388	389	1.638133	CTGACTGGAATCGCACAGAG	58.362	55.000	0.00	0.00	38.09	3.35
389	390	0.390340	TGACTGGAATCGCACAGAGC	60.390	55.000	0.00	0.00	38.09	4.09
390	391	1.078848	ACTGGAATCGCACAGAGCC	60.079	57.895	0.00	0.00	41.38	4.70
391	392	1.220206	CTGGAATCGCACAGAGCCT	59.780	57.895	0.00	0.00	41.38	4.58
392	393	0.809241	CTGGAATCGCACAGAGCCTC	60.809	60.000	0.00	0.00	41.38	4.70
393	394	1.880340	GGAATCGCACAGAGCCTCG	60.880	63.158	0.00	0.00	41.38	4.63
394	395	2.510238	AATCGCACAGAGCCTCGC	60.510	61.111	0.00	0.00	41.38	5.03
395	396	4.521062	ATCGCACAGAGCCTCGCC	62.521	66.667	0.00	0.00	41.38	5.54
397	398	4.827087	CGCACAGAGCCTCGCCAT	62.827	66.667	0.00	0.00	41.38	4.40
398	399	3.200593	GCACAGAGCCTCGCCATG	61.201	66.667	0.00	0.00	37.23	3.66
399	400	2.580815	CACAGAGCCTCGCCATGA	59.419	61.111	0.00	0.00	0.00	3.07
400	401	1.078918	CACAGAGCCTCGCCATGAA	60.079	57.895	0.00	0.00	0.00	2.57
401	402	1.088340	CACAGAGCCTCGCCATGAAG	61.088	60.000	0.00	0.00	0.00	3.02
402	403	1.260538	ACAGAGCCTCGCCATGAAGA	61.261	55.000	0.00	0.00	0.00	2.87
403	404	0.809241	CAGAGCCTCGCCATGAAGAC	60.809	60.000	0.00	0.00	0.00	3.01
404	405	1.880340	GAGCCTCGCCATGAAGACG	60.880	63.158	0.00	0.00	0.00	4.18
405	406	2.125512	GCCTCGCCATGAAGACGT	60.126	61.111	0.00	0.00	0.00	4.34
406	407	1.141019	GCCTCGCCATGAAGACGTA	59.859	57.895	0.00	0.00	0.00	3.57
407	408	0.249489	GCCTCGCCATGAAGACGTAT	60.249	55.000	0.00	0.00	0.00	3.06
408	409	1.000607	GCCTCGCCATGAAGACGTATA	60.001	52.381	0.00	0.00	0.00	1.47
409	410	2.662700	CCTCGCCATGAAGACGTATAC	58.337	52.381	0.00	0.00	0.00	1.47
410	411	2.307929	CTCGCCATGAAGACGTATACG	58.692	52.381	23.24	23.24	46.33	3.06
411	412	1.941975	TCGCCATGAAGACGTATACGA	59.058	47.619	30.77	9.19	43.02	3.43
412	413	2.032290	TCGCCATGAAGACGTATACGAG	60.032	50.000	30.77	4.18	43.02	4.18
413	414	2.286831	CGCCATGAAGACGTATACGAGT	60.287	50.000	30.77	14.50	43.02	4.18
414	415	3.059393	CGCCATGAAGACGTATACGAGTA	60.059	47.826	30.77	12.47	43.02	2.59
415	416	4.553351	CGCCATGAAGACGTATACGAGTAA	60.553	45.833	30.77	12.57	43.02	2.24
416	417	4.674211	GCCATGAAGACGTATACGAGTAAC	59.326	45.833	30.77	16.77	43.02	2.50
417	418	5.731406	GCCATGAAGACGTATACGAGTAACA	60.731	44.000	30.77	20.96	43.02	2.41
418	419	6.436261	CCATGAAGACGTATACGAGTAACAT	58.564	40.000	30.77	21.99	43.02	2.71
419	420	7.578852	CCATGAAGACGTATACGAGTAACATA	58.421	38.462	30.77	9.81	43.02	2.29
420	421	7.745155	CCATGAAGACGTATACGAGTAACATAG	59.255	40.741	30.77	16.38	43.02	2.23
421	422	6.653183	TGAAGACGTATACGAGTAACATAGC	58.347	40.000	30.77	9.24	43.02	2.97
422	423	6.481313	TGAAGACGTATACGAGTAACATAGCT	59.519	38.462	30.77	4.26	43.02	3.32
423	424	7.653311	TGAAGACGTATACGAGTAACATAGCTA	59.347	37.037	30.77	0.00	43.02	3.32
424	425	7.579589	AGACGTATACGAGTAACATAGCTAG	57.420	40.000	30.77	0.00	43.02	3.42
425	426	7.151308	AGACGTATACGAGTAACATAGCTAGT	58.849	38.462	30.77	2.90	43.02	2.57
426	427	7.655328	AGACGTATACGAGTAACATAGCTAGTT	59.345	37.037	30.77	6.69	43.02	2.24
427	428	8.818141	ACGTATACGAGTAACATAGCTAGTTA	57.182	34.615	30.77	5.74	43.02	2.24
428	429	8.704234	ACGTATACGAGTAACATAGCTAGTTAC	58.296	37.037	30.77	24.10	44.75	2.50
452	453	8.803397	ACTACTAGTATGAGTAACATCACACA	57.197	34.615	2.33	0.00	40.07	3.72
453	454	9.409918	ACTACTAGTATGAGTAACATCACACAT	57.590	33.333	2.33	0.00	40.07	3.21
459	460	9.755804	AGTATGAGTAACATCACACATATCAAG	57.244	33.333	0.00	0.00	40.07	3.02
460	461	8.982685	GTATGAGTAACATCACACATATCAAGG	58.017	37.037	0.00	0.00	40.07	3.61
461	462	5.817296	TGAGTAACATCACACATATCAAGGC	59.183	40.000	0.00	0.00	0.00	4.35
462	463	5.744171	AGTAACATCACACATATCAAGGCA	58.256	37.500	0.00	0.00	0.00	4.75
463	464	6.179756	AGTAACATCACACATATCAAGGCAA	58.820	36.000	0.00	0.00	0.00	4.52
464	465	5.571784	AACATCACACATATCAAGGCAAG	57.428	39.130	0.00	0.00	0.00	4.01
465	466	4.847198	ACATCACACATATCAAGGCAAGA	58.153	39.130	0.00	0.00	0.00	3.02
466	467	5.443283	ACATCACACATATCAAGGCAAGAT	58.557	37.500	0.00	0.00	0.00	2.40
467	468	5.298527	ACATCACACATATCAAGGCAAGATG	59.701	40.000	0.00	0.00	36.24	2.90
468	469	5.101648	TCACACATATCAAGGCAAGATGA	57.898	39.130	2.43	0.00	0.00	2.92
469	470	5.121105	TCACACATATCAAGGCAAGATGAG	58.879	41.667	2.43	0.00	0.00	2.90
470	471	4.880120	CACACATATCAAGGCAAGATGAGT	59.120	41.667	2.43	0.00	0.00	3.41
471	472	5.007430	CACACATATCAAGGCAAGATGAGTC	59.993	44.000	2.43	0.00	0.00	3.36
472	473	5.104610	ACACATATCAAGGCAAGATGAGTCT	60.105	40.000	2.43	0.00	35.82	3.24
473	474	6.098838	ACACATATCAAGGCAAGATGAGTCTA	59.901	38.462	2.43	0.00	33.30	2.59
474	475	7.160049	CACATATCAAGGCAAGATGAGTCTAT	58.840	38.462	2.43	0.00	33.30	1.98
475	476	8.309656	CACATATCAAGGCAAGATGAGTCTATA	58.690	37.037	2.43	0.00	33.30	1.31
476	477	8.530311	ACATATCAAGGCAAGATGAGTCTATAG	58.470	37.037	0.00	0.00	33.30	1.31
477	478	5.798125	TCAAGGCAAGATGAGTCTATAGG	57.202	43.478	0.00	0.00	33.30	2.57
478	479	4.039730	TCAAGGCAAGATGAGTCTATAGGC	59.960	45.833	0.00	0.00	33.30	3.93
479	480	3.855668	AGGCAAGATGAGTCTATAGGCT	58.144	45.455	6.56	6.56	34.32	4.58
480	481	5.004361	AGGCAAGATGAGTCTATAGGCTA	57.996	43.478	6.90	0.00	36.05	3.93
481	482	5.398236	AGGCAAGATGAGTCTATAGGCTAA	58.602	41.667	6.90	0.00	36.05	3.09
482	483	6.022315	AGGCAAGATGAGTCTATAGGCTAAT	58.978	40.000	6.90	5.19	36.05	1.73
483	484	7.185565	AGGCAAGATGAGTCTATAGGCTAATA	58.814	38.462	6.90	0.00	36.05	0.98
484	485	7.676043	AGGCAAGATGAGTCTATAGGCTAATAA	59.324	37.037	6.90	0.00	36.05	1.40
485	486	8.314751	GGCAAGATGAGTCTATAGGCTAATAAA	58.685	37.037	6.90	0.00	33.30	1.40
486	487	9.883142	GCAAGATGAGTCTATAGGCTAATAAAT	57.117	33.333	6.90	0.00	33.30	1.40
501	502	9.135843	AGGCTAATAAATAAAGTTTTGCGTTTC	57.864	29.630	0.00	0.00	0.00	2.78
502	503	8.917655	GGCTAATAAATAAAGTTTTGCGTTTCA	58.082	29.630	0.00	0.00	0.00	2.69
503	504	9.721933	GCTAATAAATAAAGTTTTGCGTTTCAC	57.278	29.630	0.00	0.00	0.00	3.18
505	506	8.649973	AATAAATAAAGTTTTGCGTTTCACCA	57.350	26.923	0.00	0.00	0.00	4.17
506	507	5.959652	AATAAAGTTTTGCGTTTCACCAC	57.040	34.783	0.00	0.00	0.00	4.16
507	508	3.305398	AAAGTTTTGCGTTTCACCACA	57.695	38.095	0.00	0.00	0.00	4.17
508	509	2.271821	AGTTTTGCGTTTCACCACAC	57.728	45.000	0.00	0.00	0.00	3.82
509	510	1.542030	AGTTTTGCGTTTCACCACACA	59.458	42.857	0.00	0.00	0.00	3.72
510	511	2.165437	AGTTTTGCGTTTCACCACACAT	59.835	40.909	0.00	0.00	0.00	3.21
511	512	3.378742	AGTTTTGCGTTTCACCACACATA	59.621	39.130	0.00	0.00	0.00	2.29
512	513	4.037446	AGTTTTGCGTTTCACCACACATAT	59.963	37.500	0.00	0.00	0.00	1.78
513	514	3.550950	TTGCGTTTCACCACACATATG	57.449	42.857	0.00	0.00	0.00	1.78
514	515	2.499197	TGCGTTTCACCACACATATGT	58.501	42.857	1.41	1.41	40.80	2.29
515	516	2.881513	TGCGTTTCACCACACATATGTT	59.118	40.909	5.37	0.00	36.72	2.71
516	517	4.065789	TGCGTTTCACCACACATATGTTA	58.934	39.130	5.37	0.00	36.72	2.41
517	518	4.083749	TGCGTTTCACCACACATATGTTAC	60.084	41.667	5.37	0.00	36.72	2.50
518	519	4.153475	GCGTTTCACCACACATATGTTACT	59.847	41.667	5.37	0.00	36.72	2.24
519	520	5.670341	GCGTTTCACCACACATATGTTACTC	60.670	44.000	5.37	0.00	36.72	2.59
520	521	5.163893	CGTTTCACCACACATATGTTACTCC	60.164	44.000	5.37	0.00	36.72	3.85
521	522	5.755409	TTCACCACACATATGTTACTCCT	57.245	39.130	5.37	0.00	36.72	3.69
522	523	5.339008	TCACCACACATATGTTACTCCTC	57.661	43.478	5.37	0.00	36.72	3.71
523	524	4.775253	TCACCACACATATGTTACTCCTCA	59.225	41.667	5.37	0.00	36.72	3.86
524	525	4.870426	CACCACACATATGTTACTCCTCAC	59.130	45.833	5.37	0.00	36.72	3.51
525	526	4.777896	ACCACACATATGTTACTCCTCACT	59.222	41.667	5.37	0.00	36.72	3.41
526	527	5.955959	ACCACACATATGTTACTCCTCACTA	59.044	40.000	5.37	0.00	36.72	2.74
527	528	6.611642	ACCACACATATGTTACTCCTCACTAT	59.388	38.462	5.37	0.00	36.72	2.12
528	529	7.783119	ACCACACATATGTTACTCCTCACTATA	59.217	37.037	5.37	0.00	36.72	1.31
529	530	8.300286	CCACACATATGTTACTCCTCACTATAG	58.700	40.741	5.37	0.00	36.72	1.31
530	531	9.067986	CACACATATGTTACTCCTCACTATAGA	57.932	37.037	5.37	0.00	36.72	1.98
531	532	9.642343	ACACATATGTTACTCCTCACTATAGAA	57.358	33.333	5.37	0.00	34.46	2.10
533	534	9.869667	ACATATGTTACTCCTCACTATAGAAGT	57.130	33.333	6.78	4.59	39.81	3.01
557	558	9.917887	AGTAGTAACATAGAGTAGTAACATGGT	57.082	33.333	0.00	0.00	0.00	3.55
559	560	8.818622	AGTAACATAGAGTAGTAACATGGTCA	57.181	34.615	0.00	0.00	0.00	4.02
560	561	9.422681	AGTAACATAGAGTAGTAACATGGTCAT	57.577	33.333	0.00	0.00	0.00	3.06
561	562	9.464714	GTAACATAGAGTAGTAACATGGTCATG	57.535	37.037	9.19	9.19	44.15	3.07
584	585	9.674824	CATGTTACTACTCTATTTTACTACCCG	57.325	37.037	0.00	0.00	0.00	5.28
585	586	7.707104	TGTTACTACTCTATTTTACTACCCGC	58.293	38.462	0.00	0.00	0.00	6.13
586	587	7.557719	TGTTACTACTCTATTTTACTACCCGCT	59.442	37.037	0.00	0.00	0.00	5.52
593	594	1.481901	TTTACTACCCGCTGTGGCCA	61.482	55.000	0.00	0.00	35.87	5.36
595	596	3.706373	CTACCCGCTGTGGCCAGT	61.706	66.667	5.11	0.91	41.02	4.00
722	726	5.043903	AGTATCACGAGTACACATTCATGC	58.956	41.667	0.00	0.00	0.00	4.06
744	748	3.374988	CCGGGTAGTTTCGTAATTTTCCC	59.625	47.826	0.00	0.00	0.00	3.97
856	861	0.984995	CCTTCCTTTCGAGACCCCTT	59.015	55.000	0.00	0.00	0.00	3.95
858	863	1.623811	CTTCCTTTCGAGACCCCTTCA	59.376	52.381	0.00	0.00	0.00	3.02
891	896	8.391075	TCCTTCATCTTTTTATCGTTCACTTT	57.609	30.769	0.00	0.00	0.00	2.66
1003	1014	5.182760	CACTCTGAAGGGAAAGAGAAAATGG	59.817	44.000	6.69	0.00	42.15	3.16
1187	1198	9.424319	TCACTGATTTGTATCTTGTTCTTCTAC	57.576	33.333	0.00	0.00	0.00	2.59
1424	1443	3.258971	AGCAAGTCAGCTGTTAGATCC	57.741	47.619	14.67	0.00	44.66	3.36
1461	1508	9.845214	ATAGGATAGGAAATAGGAGTACATGTT	57.155	33.333	2.30	0.00	0.00	2.71
1778	1825	0.816421	TCGACGCCACTGATCCGATA	60.816	55.000	0.00	0.00	0.00	2.92
1824	1871	1.613925	TCTGCCATATCTAGGTGACGC	59.386	52.381	0.00	0.00	0.00	5.19
1825	1872	1.615883	CTGCCATATCTAGGTGACGCT	59.384	52.381	0.00	0.00	0.00	5.07
1832	1879	1.517257	CTAGGTGACGCTTCGGCTG	60.517	63.158	0.00	0.00	35.04	4.85
1847	1894	1.735369	CGGCTGTTGTGTTGTTTGCTT	60.735	47.619	0.00	0.00	0.00	3.91
1860	1907	2.159824	TGTTTGCTTGTTTTGACGACGA	59.840	40.909	0.00	0.00	0.00	4.20
1874	1921	4.370049	TGACGACGAAAATGGAGTGTTTA	58.630	39.130	0.00	0.00	0.00	2.01
1974	2057	6.812160	GTGTTAATTGACCGAGATGAACTAGT	59.188	38.462	0.00	0.00	0.00	2.57
1975	2058	7.972277	GTGTTAATTGACCGAGATGAACTAGTA	59.028	37.037	0.00	0.00	0.00	1.82
2105	2188	4.535526	TTGCAGCTATGTGTCTCTTACA	57.464	40.909	0.00	0.00	35.06	2.41
2107	2190	5.089970	TGCAGCTATGTGTCTCTTACATT	57.910	39.130	0.00	0.00	41.10	2.71
2111	2194	7.770433	TGCAGCTATGTGTCTCTTACATTTTAT	59.230	33.333	0.00	0.00	41.10	1.40
2212	2295	8.752766	TCTTAGTTTTACGATGGTCAAAGTAG	57.247	34.615	0.00	0.51	30.76	2.57
2231	2314	1.100510	GGACCCAAAATACGAAGGGC	58.899	55.000	0.00	0.00	45.45	5.19
2287	2370	6.478129	TCCGTTTGGGTTTATTAGTCTCATT	58.522	36.000	0.00	0.00	37.00	2.57
2288	2371	6.373216	TCCGTTTGGGTTTATTAGTCTCATTG	59.627	38.462	0.00	0.00	37.00	2.82
2467	2598	8.567285	AAAATACAAGGAGATGAGTAAACCAG	57.433	34.615	0.00	0.00	0.00	4.00
2468	2599	4.559862	ACAAGGAGATGAGTAAACCAGG	57.440	45.455	0.00	0.00	0.00	4.45
2472	2603	4.624913	AGGAGATGAGTAAACCAGGATGA	58.375	43.478	0.00	0.00	39.69	2.92
2485	2621	2.566724	CCAGGATGAGATTCCTCTAGGC	59.433	54.545	0.00	0.00	44.54	3.93
2516	2664	3.004629	TGACCAACGTACGTGTTGTCTAT	59.995	43.478	29.29	11.48	46.08	1.98
2542	2690	6.014156	AGTCAAGCTTTATCCACTAACTGTCT	60.014	38.462	0.00	0.00	0.00	3.41
2554	2702	7.997482	TCCACTAACTGTCTAGTAATAAGCAG	58.003	38.462	0.00	0.00	35.69	4.24
2555	2703	7.832685	TCCACTAACTGTCTAGTAATAAGCAGA	59.167	37.037	7.41	0.00	35.69	4.26
2556	2704	8.634444	CCACTAACTGTCTAGTAATAAGCAGAT	58.366	37.037	7.41	0.31	35.69	2.90
2576	2724	7.866393	AGCAGATTAATCATGTTACGTAGTACC	59.134	37.037	17.56	0.00	45.76	3.34
2577	2725	7.115947	GCAGATTAATCATGTTACGTAGTACCC	59.884	40.741	17.56	0.00	45.76	3.69
2578	2726	7.597743	CAGATTAATCATGTTACGTAGTACCCC	59.402	40.741	17.56	0.00	45.76	4.95
2579	2727	7.508296	AGATTAATCATGTTACGTAGTACCCCT	59.492	37.037	17.56	0.00	45.76	4.79
2580	2728	5.526506	AATCATGTTACGTAGTACCCCTC	57.473	43.478	0.00	0.00	45.76	4.30
2581	2729	3.290710	TCATGTTACGTAGTACCCCTCC	58.709	50.000	0.00	0.00	45.76	4.30
2582	2730	1.750193	TGTTACGTAGTACCCCTCCG	58.250	55.000	0.00	0.00	45.76	4.63
2583	2731	1.004277	TGTTACGTAGTACCCCTCCGT	59.996	52.381	0.00	0.00	45.76	4.69
2584	2732	2.237643	TGTTACGTAGTACCCCTCCGTA	59.762	50.000	0.00	0.00	45.76	4.02
2585	2733	3.275999	GTTACGTAGTACCCCTCCGTAA	58.724	50.000	0.00	0.00	45.76	3.18
2586	2734	2.507407	ACGTAGTACCCCTCCGTAAA	57.493	50.000	0.00	0.00	41.94	2.01
2587	2735	2.802719	ACGTAGTACCCCTCCGTAAAA	58.197	47.619	0.00	0.00	41.94	1.52
2588	2736	3.161866	ACGTAGTACCCCTCCGTAAAAA	58.838	45.455	0.00	0.00	41.94	1.94
2589	2737	3.193479	ACGTAGTACCCCTCCGTAAAAAG	59.807	47.826	0.00	0.00	41.94	2.27
2590	2738	3.443681	CGTAGTACCCCTCCGTAAAAAGA	59.556	47.826	0.00	0.00	0.00	2.52
2591	2739	4.098501	CGTAGTACCCCTCCGTAAAAAGAT	59.901	45.833	0.00	0.00	0.00	2.40
2592	2740	5.299279	CGTAGTACCCCTCCGTAAAAAGATA	59.701	44.000	0.00	0.00	0.00	1.98
2593	2741	6.015940	CGTAGTACCCCTCCGTAAAAAGATAT	60.016	42.308	0.00	0.00	0.00	1.63
2594	2742	7.174946	CGTAGTACCCCTCCGTAAAAAGATATA	59.825	40.741	0.00	0.00	0.00	0.86
2595	2743	7.919385	AGTACCCCTCCGTAAAAAGATATAA	57.081	36.000	0.00	0.00	0.00	0.98
2596	2744	7.960262	AGTACCCCTCCGTAAAAAGATATAAG	58.040	38.462	0.00	0.00	0.00	1.73
2597	2745	7.786464	AGTACCCCTCCGTAAAAAGATATAAGA	59.214	37.037	0.00	0.00	0.00	2.10
2598	2746	7.063934	ACCCCTCCGTAAAAAGATATAAGAG	57.936	40.000	0.00	0.00	0.00	2.85
2599	2747	5.932883	CCCCTCCGTAAAAAGATATAAGAGC	59.067	44.000	0.00	0.00	0.00	4.09
2600	2748	5.634020	CCCTCCGTAAAAAGATATAAGAGCG	59.366	44.000	0.00	0.00	0.00	5.03
2601	2749	6.214399	CCTCCGTAAAAAGATATAAGAGCGT	58.786	40.000	0.00	0.00	0.00	5.07
2602	2750	6.700520	CCTCCGTAAAAAGATATAAGAGCGTT	59.299	38.462	0.00	0.00	0.00	4.84
2603	2751	7.224167	CCTCCGTAAAAAGATATAAGAGCGTTT	59.776	37.037	0.00	0.00	0.00	3.60
2604	2752	9.241317	CTCCGTAAAAAGATATAAGAGCGTTTA	57.759	33.333	0.00	0.00	0.00	2.01
2605	2753	9.241317	TCCGTAAAAAGATATAAGAGCGTTTAG	57.759	33.333	0.00	0.00	0.00	1.85
2606	2754	9.241317	CCGTAAAAAGATATAAGAGCGTTTAGA	57.759	33.333	0.00	0.00	0.00	2.10
2764	2912	1.584495	CACGACAGTCATCCGACCA	59.416	57.895	0.41	0.00	43.73	4.02
2792	2947	1.207791	GCTCCCTTTCTCCTCCATCA	58.792	55.000	0.00	0.00	0.00	3.07

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	0.033796	AGGATGGTGGCATTGTCTGG	60.034	55.000	0.00	0.00	0.00	3.86
3	4	1.100510	CAGGATGGTGGCATTGTCTG	58.899	55.000	0.00	0.00	0.00	3.51
4	5	0.682209	GCAGGATGGTGGCATTGTCT	60.682	55.000	0.00	0.00	35.86	3.41
5	6	0.966875	TGCAGGATGGTGGCATTGTC	60.967	55.000	0.00	0.00	35.86	3.18
6	7	1.077086	TGCAGGATGGTGGCATTGT	59.923	52.632	0.00	0.00	35.86	2.71
7	8	1.514087	GTGCAGGATGGTGGCATTG	59.486	57.895	0.00	0.00	40.05	2.82
8	9	2.048023	CGTGCAGGATGGTGGCATT	61.048	57.895	0.00	0.00	40.05	3.56
9	10	1.909459	TACGTGCAGGATGGTGGCAT	61.909	55.000	14.38	0.00	40.05	4.40
10	11	1.909459	ATACGTGCAGGATGGTGGCA	61.909	55.000	14.38	0.00	35.86	4.92
11	12	1.153168	ATACGTGCAGGATGGTGGC	60.153	57.895	14.38	0.00	35.86	5.01
12	13	0.532862	GGATACGTGCAGGATGGTGG	60.533	60.000	14.38	0.00	35.86	4.61
13	14	0.177836	TGGATACGTGCAGGATGGTG	59.822	55.000	14.38	0.00	42.51	4.17
14	15	1.070758	GATGGATACGTGCAGGATGGT	59.929	52.381	14.38	0.00	42.51	3.55
15	16	1.609061	GGATGGATACGTGCAGGATGG	60.609	57.143	14.38	0.00	44.54	3.51
16	17	1.800805	GGATGGATACGTGCAGGATG	58.199	55.000	14.38	0.00	44.54	3.51
25	26	1.151777	GGCACACGTGGATGGATACG	61.152	60.000	21.57	0.00	45.19	3.06
26	27	0.814010	GGGCACACGTGGATGGATAC	60.814	60.000	21.57	0.85	0.00	2.24
27	28	1.268283	TGGGCACACGTGGATGGATA	61.268	55.000	21.57	0.00	0.00	2.59
28	29	1.925285	ATGGGCACACGTGGATGGAT	61.925	55.000	21.57	3.15	0.00	3.41
29	30	2.535485	GATGGGCACACGTGGATGGA	62.535	60.000	21.57	0.54	0.00	3.41
30	31	2.045045	ATGGGCACACGTGGATGG	60.045	61.111	21.57	7.44	0.00	3.51
31	32	1.377072	TGATGGGCACACGTGGATG	60.377	57.895	21.57	11.24	0.00	3.51
32	33	1.377202	GTGATGGGCACACGTGGAT	60.377	57.895	21.57	3.29	46.91	3.41
33	34	2.031919	GTGATGGGCACACGTGGA	59.968	61.111	21.57	0.00	46.91	4.02
40	41	1.305930	GGAGTTTCGGTGATGGGCAC	61.306	60.000	0.00	0.00	46.98	5.01
41	42	1.002624	GGAGTTTCGGTGATGGGCA	60.003	57.895	0.00	0.00	0.00	5.36
42	43	2.106683	CGGAGTTTCGGTGATGGGC	61.107	63.158	0.00	0.00	0.00	5.36
43	44	2.106683	GCGGAGTTTCGGTGATGGG	61.107	63.158	0.00	0.00	0.00	4.00
44	45	1.361668	CTGCGGAGTTTCGGTGATGG	61.362	60.000	0.00	0.00	0.00	3.51
45	46	0.670546	ACTGCGGAGTTTCGGTGATG	60.671	55.000	2.68	0.00	0.00	3.07
46	47	0.670546	CACTGCGGAGTTTCGGTGAT	60.671	55.000	6.93	0.00	40.95	3.06
47	48	1.300620	CACTGCGGAGTTTCGGTGA	60.301	57.895	6.93	0.00	40.95	4.02
48	49	2.954753	GCACTGCGGAGTTTCGGTG	61.955	63.158	6.93	0.00	41.29	4.94
49	50	2.665185	GCACTGCGGAGTTTCGGT	60.665	61.111	6.93	0.00	0.00	4.69
50	51	3.423154	GGCACTGCGGAGTTTCGG	61.423	66.667	6.93	0.00	0.00	4.30
51	52	2.034879	ATGGCACTGCGGAGTTTCG	61.035	57.895	6.93	0.00	0.00	3.46
52	53	1.503542	CATGGCACTGCGGAGTTTC	59.496	57.895	6.93	2.94	0.00	2.78
53	54	2.629656	GCATGGCACTGCGGAGTTT	61.630	57.895	6.93	0.00	31.49	2.66
54	55	3.058160	GCATGGCACTGCGGAGTT	61.058	61.111	6.93	0.00	31.49	3.01
61	62	2.881539	ATCTCCGTGGCATGGCACTG	62.882	60.000	39.14	34.65	0.00	3.66
62	63	2.599645	GATCTCCGTGGCATGGCACT	62.600	60.000	39.14	26.11	0.00	4.40
63	64	2.124570	ATCTCCGTGGCATGGCAC	60.125	61.111	35.60	35.60	0.00	5.01
64	65	2.190313	GATCTCCGTGGCATGGCA	59.810	61.111	21.22	19.43	0.00	4.92
65	66	2.592861	GGATCTCCGTGGCATGGC	60.593	66.667	21.22	13.29	0.00	4.40
82	83	0.597637	CTACCACAAGGCCGATAGCG	60.598	60.000	0.00	0.00	45.17	4.26
83	84	0.750850	TCTACCACAAGGCCGATAGC	59.249	55.000	0.00	0.00	39.06	2.97
84	85	2.365617	ACATCTACCACAAGGCCGATAG	59.634	50.000	0.00	0.00	39.06	2.08
85	86	2.394632	ACATCTACCACAAGGCCGATA	58.605	47.619	0.00	0.00	39.06	2.92
86	87	1.204146	ACATCTACCACAAGGCCGAT	58.796	50.000	0.00	0.00	39.06	4.18
87	88	1.855295	TACATCTACCACAAGGCCGA	58.145	50.000	0.00	0.00	39.06	5.54
88	89	2.277084	GTTACATCTACCACAAGGCCG	58.723	52.381	0.00	0.00	39.06	6.13
89	90	3.007635	GTGTTACATCTACCACAAGGCC	58.992	50.000	0.00	0.00	39.06	5.19
90	91	3.007635	GGTGTTACATCTACCACAAGGC	58.992	50.000	0.00	0.00	39.06	4.35
91	92	3.259064	CGGTGTTACATCTACCACAAGG	58.741	50.000	0.00	0.00	42.21	3.61
92	93	2.671396	GCGGTGTTACATCTACCACAAG	59.329	50.000	0.00	0.00	34.10	3.16
93	94	2.300723	AGCGGTGTTACATCTACCACAA	59.699	45.455	0.00	0.00	34.10	3.33
94	95	1.897133	AGCGGTGTTACATCTACCACA	59.103	47.619	0.00	0.00	34.10	4.17
95	96	2.537401	GAGCGGTGTTACATCTACCAC	58.463	52.381	0.00	0.00	34.10	4.16
96	97	1.479323	GGAGCGGTGTTACATCTACCA	59.521	52.381	0.00	0.00	34.10	3.25
97	98	1.755380	AGGAGCGGTGTTACATCTACC	59.245	52.381	0.00	0.00	0.00	3.18
98	99	2.223758	GGAGGAGCGGTGTTACATCTAC	60.224	54.545	0.00	0.00	0.00	2.59
99	100	2.029623	GGAGGAGCGGTGTTACATCTA	58.970	52.381	0.00	0.00	0.00	1.98
100	101	0.824759	GGAGGAGCGGTGTTACATCT	59.175	55.000	0.00	0.00	0.00	2.90
101	102	0.824759	AGGAGGAGCGGTGTTACATC	59.175	55.000	0.00	0.00	0.00	3.06
102	103	0.824759	GAGGAGGAGCGGTGTTACAT	59.175	55.000	0.00	0.00	0.00	2.29
103	104	0.251653	AGAGGAGGAGCGGTGTTACA	60.252	55.000	0.00	0.00	0.00	2.41
104	105	0.896226	AAGAGGAGGAGCGGTGTTAC	59.104	55.000	0.00	0.00	0.00	2.50
105	106	0.895530	CAAGAGGAGGAGCGGTGTTA	59.104	55.000	0.00	0.00	0.00	2.41
106	107	1.122019	ACAAGAGGAGGAGCGGTGTT	61.122	55.000	0.00	0.00	0.00	3.32
107	108	1.534235	ACAAGAGGAGGAGCGGTGT	60.534	57.895	0.00	0.00	0.00	4.16
108	109	1.216710	GACAAGAGGAGGAGCGGTG	59.783	63.158	0.00	0.00	0.00	4.94
109	110	1.985116	GGACAAGAGGAGGAGCGGT	60.985	63.158	0.00	0.00	0.00	5.68
110	111	2.726351	GGGACAAGAGGAGGAGCGG	61.726	68.421	0.00	0.00	0.00	5.52
111	112	2.726351	GGGGACAAGAGGAGGAGCG	61.726	68.421	0.00	0.00	0.00	5.03
112	113	1.306568	AGGGGACAAGAGGAGGAGC	60.307	63.158	0.00	0.00	0.00	4.70
113	114	0.689412	GGAGGGGACAAGAGGAGGAG	60.689	65.000	0.00	0.00	0.00	3.69
114	115	1.392534	GGAGGGGACAAGAGGAGGA	59.607	63.158	0.00	0.00	0.00	3.71
115	116	0.980231	CTGGAGGGGACAAGAGGAGG	60.980	65.000	0.00	0.00	0.00	4.30
116	117	1.621672	GCTGGAGGGGACAAGAGGAG	61.622	65.000	0.00	0.00	0.00	3.69
117	118	1.613630	GCTGGAGGGGACAAGAGGA	60.614	63.158	0.00	0.00	0.00	3.71
118	119	2.674220	GGCTGGAGGGGACAAGAGG	61.674	68.421	0.00	0.00	0.00	3.69
119	120	1.908340	CTGGCTGGAGGGGACAAGAG	61.908	65.000	0.00	0.00	0.00	2.85
120	121	1.920325	CTGGCTGGAGGGGACAAGA	60.920	63.158	0.00	0.00	0.00	3.02
121	122	2.673523	CTGGCTGGAGGGGACAAG	59.326	66.667	0.00	0.00	0.00	3.16
122	123	3.650950	GCTGGCTGGAGGGGACAA	61.651	66.667	0.00	0.00	0.00	3.18
123	124	4.980592	TGCTGGCTGGAGGGGACA	62.981	66.667	0.00	0.00	0.00	4.02
124	125	4.416738	GTGCTGGCTGGAGGGGAC	62.417	72.222	0.00	0.00	0.00	4.46
125	126	4.664267	AGTGCTGGCTGGAGGGGA	62.664	66.667	0.00	0.00	0.00	4.81
126	127	3.655211	AAGTGCTGGCTGGAGGGG	61.655	66.667	0.00	0.00	0.00	4.79
127	128	2.360852	CAAGTGCTGGCTGGAGGG	60.361	66.667	0.00	0.00	0.00	4.30
128	129	3.060615	GCAAGTGCTGGCTGGAGG	61.061	66.667	0.00	0.00	38.21	4.30
138	139	2.533266	GCATTGTATTGGAGCAAGTGC	58.467	47.619	0.00	0.00	42.49	4.40
139	140	2.159198	GGGCATTGTATTGGAGCAAGTG	60.159	50.000	0.00	0.00	0.00	3.16
140	141	2.102578	GGGCATTGTATTGGAGCAAGT	58.897	47.619	0.00	0.00	0.00	3.16
141	142	1.410153	GGGGCATTGTATTGGAGCAAG	59.590	52.381	0.00	0.00	0.00	4.01
142	143	1.272928	TGGGGCATTGTATTGGAGCAA	60.273	47.619	0.00	0.00	0.00	3.91
143	144	0.334335	TGGGGCATTGTATTGGAGCA	59.666	50.000	0.00	0.00	0.00	4.26
144	145	1.035139	CTGGGGCATTGTATTGGAGC	58.965	55.000	0.00	0.00	0.00	4.70
145	146	1.215173	TCCTGGGGCATTGTATTGGAG	59.785	52.381	0.00	0.00	0.00	3.86
146	147	1.215173	CTCCTGGGGCATTGTATTGGA	59.785	52.381	0.00	0.00	0.00	3.53
147	148	1.696063	CTCCTGGGGCATTGTATTGG	58.304	55.000	0.00	0.00	0.00	3.16
148	149	1.215173	TCCTCCTGGGGCATTGTATTG	59.785	52.381	0.00	0.00	35.33	1.90
149	150	1.607225	TCCTCCTGGGGCATTGTATT	58.393	50.000	0.00	0.00	35.33	1.89
150	151	1.496429	CTTCCTCCTGGGGCATTGTAT	59.504	52.381	0.00	0.00	35.33	2.29
151	152	0.918983	CTTCCTCCTGGGGCATTGTA	59.081	55.000	0.00	0.00	35.33	2.41
152	153	0.846427	TCTTCCTCCTGGGGCATTGT	60.846	55.000	0.00	0.00	35.33	2.71
153	154	0.332632	TTCTTCCTCCTGGGGCATTG	59.667	55.000	0.00	0.00	35.33	2.82
154	155	0.332972	GTTCTTCCTCCTGGGGCATT	59.667	55.000	0.00	0.00	35.33	3.56
155	156	0.846427	TGTTCTTCCTCCTGGGGCAT	60.846	55.000	0.00	0.00	35.33	4.40
156	157	1.065410	TTGTTCTTCCTCCTGGGGCA	61.065	55.000	0.00	0.00	35.33	5.36
157	158	0.609406	GTTGTTCTTCCTCCTGGGGC	60.609	60.000	0.00	0.00	35.33	5.80
158	159	0.771127	TGTTGTTCTTCCTCCTGGGG	59.229	55.000	0.00	0.00	35.33	4.96
159	160	2.040278	TGATGTTGTTCTTCCTCCTGGG	59.960	50.000	0.00	0.00	0.00	4.45
160	161	3.423539	TGATGTTGTTCTTCCTCCTGG	57.576	47.619	0.00	0.00	0.00	4.45
161	162	4.217118	CCTTTGATGTTGTTCTTCCTCCTG	59.783	45.833	0.00	0.00	0.00	3.86
162	163	4.401925	CCTTTGATGTTGTTCTTCCTCCT	58.598	43.478	0.00	0.00	0.00	3.69
163	164	3.057245	GCCTTTGATGTTGTTCTTCCTCC	60.057	47.826	0.00	0.00	0.00	4.30
164	165	3.569701	TGCCTTTGATGTTGTTCTTCCTC	59.430	43.478	0.00	0.00	0.00	3.71
165	166	3.565307	TGCCTTTGATGTTGTTCTTCCT	58.435	40.909	0.00	0.00	0.00	3.36
166	167	4.488879	GATGCCTTTGATGTTGTTCTTCC	58.511	43.478	0.00	0.00	0.00	3.46
167	168	4.161333	CGATGCCTTTGATGTTGTTCTTC	58.839	43.478	0.00	0.00	0.00	2.87
168	169	3.569701	ACGATGCCTTTGATGTTGTTCTT	59.430	39.130	0.00	0.00	0.00	2.52
169	170	3.149196	ACGATGCCTTTGATGTTGTTCT	58.851	40.909	0.00	0.00	0.00	3.01
170	171	3.058293	TGACGATGCCTTTGATGTTGTTC	60.058	43.478	0.00	0.00	0.00	3.18
171	172	2.884012	TGACGATGCCTTTGATGTTGTT	59.116	40.909	0.00	0.00	0.00	2.83
172	173	2.503331	TGACGATGCCTTTGATGTTGT	58.497	42.857	0.00	0.00	0.00	3.32
173	174	3.688272	GATGACGATGCCTTTGATGTTG	58.312	45.455	0.00	0.00	0.00	3.33
174	175	2.352651	CGATGACGATGCCTTTGATGTT	59.647	45.455	0.00	0.00	42.66	2.71
175	176	1.935873	CGATGACGATGCCTTTGATGT	59.064	47.619	0.00	0.00	42.66	3.06
176	177	1.935873	ACGATGACGATGCCTTTGATG	59.064	47.619	0.00	0.00	42.66	3.07
177	178	2.205074	GACGATGACGATGCCTTTGAT	58.795	47.619	0.00	0.00	42.66	2.57
178	179	1.640428	GACGATGACGATGCCTTTGA	58.360	50.000	0.00	0.00	42.66	2.69
179	180	0.652592	GGACGATGACGATGCCTTTG	59.347	55.000	0.00	0.00	42.66	2.77
180	181	0.806102	CGGACGATGACGATGCCTTT	60.806	55.000	0.00	0.00	42.66	3.11
181	182	1.226974	CGGACGATGACGATGCCTT	60.227	57.895	0.00	0.00	42.66	4.35
182	183	1.456196	ATCGGACGATGACGATGCCT	61.456	55.000	6.39	0.00	46.83	4.75
183	184	1.007271	ATCGGACGATGACGATGCC	60.007	57.895	6.39	0.00	46.83	4.40
184	185	4.635925	ATCGGACGATGACGATGC	57.364	55.556	6.39	0.00	46.83	3.91
187	188	3.019800	CGGATCGGACGATGACGA	58.980	61.111	12.40	0.00	43.85	4.20
203	204	4.559502	CCAAATCTGGGCCTACCG	57.440	61.111	4.53	0.00	44.64	4.02
221	222	2.849096	GGGATGTTCCGGGGGAAACC	62.849	65.000	0.00	3.82	43.86	3.27
222	223	1.379443	GGGATGTTCCGGGGGAAAC	60.379	63.158	0.00	0.00	43.86	2.78
223	224	2.974041	CGGGATGTTCCGGGGGAAA	61.974	63.158	0.00	0.00	43.86	3.13
224	225	3.404438	CGGGATGTTCCGGGGGAA	61.404	66.667	0.00	0.00	45.78	3.97
231	232	1.136305	TCAACTCGATCGGGATGTTCC	59.864	52.381	24.50	0.00	35.23	3.62
232	233	2.194271	GTCAACTCGATCGGGATGTTC	58.806	52.381	24.50	13.74	0.00	3.18
233	234	1.469251	CGTCAACTCGATCGGGATGTT	60.469	52.381	24.50	15.14	0.00	2.71
234	235	0.100682	CGTCAACTCGATCGGGATGT	59.899	55.000	24.50	9.89	0.00	3.06
235	236	0.100682	ACGTCAACTCGATCGGGATG	59.899	55.000	24.50	21.13	34.70	3.51
236	237	0.100682	CACGTCAACTCGATCGGGAT	59.899	55.000	24.50	7.07	34.70	3.85
237	238	0.956902	TCACGTCAACTCGATCGGGA	60.957	55.000	24.50	8.75	31.18	5.14
238	239	0.797249	GTCACGTCAACTCGATCGGG	60.797	60.000	14.88	14.88	34.70	5.14
239	240	0.797249	GGTCACGTCAACTCGATCGG	60.797	60.000	16.41	8.65	34.70	4.18
240	241	0.168348	AGGTCACGTCAACTCGATCG	59.832	55.000	9.36	9.36	34.70	3.69
241	242	1.618861	CAGGTCACGTCAACTCGATC	58.381	55.000	0.00	0.00	34.70	3.69
242	243	0.388649	GCAGGTCACGTCAACTCGAT	60.389	55.000	0.00	0.00	34.70	3.59
243	244	1.007734	GCAGGTCACGTCAACTCGA	60.008	57.895	0.00	0.00	34.70	4.04
244	245	0.874175	TTGCAGGTCACGTCAACTCG	60.874	55.000	0.00	0.00	0.00	4.18
245	246	0.582005	GTTGCAGGTCACGTCAACTC	59.418	55.000	7.96	0.00	36.72	3.01
246	247	1.151777	CGTTGCAGGTCACGTCAACT	61.152	55.000	12.08	0.00	37.31	3.16
247	248	1.149361	TCGTTGCAGGTCACGTCAAC	61.149	55.000	8.38	5.68	36.42	3.18
248	249	0.249699	ATCGTTGCAGGTCACGTCAA	60.250	50.000	8.38	0.00	0.00	3.18
249	250	0.943835	CATCGTTGCAGGTCACGTCA	60.944	55.000	8.38	0.00	0.00	4.35
250	251	0.666274	TCATCGTTGCAGGTCACGTC	60.666	55.000	8.38	0.00	0.00	4.34
251	252	0.037326	ATCATCGTTGCAGGTCACGT	60.037	50.000	8.38	0.00	0.00	4.49
252	253	0.371301	CATCATCGTTGCAGGTCACG	59.629	55.000	2.24	2.24	0.00	4.35
253	254	0.097674	GCATCATCGTTGCAGGTCAC	59.902	55.000	0.00	0.00	39.90	3.67
254	255	1.026182	GGCATCATCGTTGCAGGTCA	61.026	55.000	0.00	0.00	41.95	4.02
255	256	0.745845	AGGCATCATCGTTGCAGGTC	60.746	55.000	0.00	0.00	41.95	3.85
256	257	0.745845	GAGGCATCATCGTTGCAGGT	60.746	55.000	0.00	0.00	41.95	4.00
257	258	1.769098	CGAGGCATCATCGTTGCAGG	61.769	60.000	0.00	0.00	41.95	4.85
258	259	0.807275	TCGAGGCATCATCGTTGCAG	60.807	55.000	0.00	0.00	41.95	4.41
259	260	0.807275	CTCGAGGCATCATCGTTGCA	60.807	55.000	3.91	0.00	41.95	4.08
260	261	0.528466	TCTCGAGGCATCATCGTTGC	60.528	55.000	13.56	0.00	40.95	4.17
261	262	1.857217	CTTCTCGAGGCATCATCGTTG	59.143	52.381	13.56	0.00	40.95	4.10
262	263	1.202463	CCTTCTCGAGGCATCATCGTT	60.202	52.381	13.56	0.00	39.09	3.85
263	264	0.387202	CCTTCTCGAGGCATCATCGT	59.613	55.000	13.56	0.00	39.09	3.73
264	265	0.670706	TCCTTCTCGAGGCATCATCG	59.329	55.000	13.56	0.00	45.87	3.84
265	266	2.869192	GTTTCCTTCTCGAGGCATCATC	59.131	50.000	13.56	0.00	45.87	2.92
266	267	2.739932	CGTTTCCTTCTCGAGGCATCAT	60.740	50.000	13.56	0.00	45.87	2.45
267	268	1.404181	CGTTTCCTTCTCGAGGCATCA	60.404	52.381	13.56	0.00	45.87	3.07
268	269	1.135083	TCGTTTCCTTCTCGAGGCATC	60.135	52.381	13.56	0.00	45.87	3.91
269	270	0.895530	TCGTTTCCTTCTCGAGGCAT	59.104	50.000	13.56	0.00	45.87	4.40
270	271	0.038526	GTCGTTTCCTTCTCGAGGCA	60.039	55.000	13.56	0.00	45.87	4.75
271	272	1.071567	CGTCGTTTCCTTCTCGAGGC	61.072	60.000	13.56	0.00	45.87	4.70
273	274	1.069432	TGTCGTCGTTTCCTTCTCGAG	60.069	52.381	5.93	5.93	34.33	4.04
274	275	0.946528	TGTCGTCGTTTCCTTCTCGA	59.053	50.000	0.00	0.00	0.00	4.04
275	276	1.069432	TCTGTCGTCGTTTCCTTCTCG	60.069	52.381	0.00	0.00	0.00	4.04
276	277	2.586900	CTCTGTCGTCGTTTCCTTCTC	58.413	52.381	0.00	0.00	0.00	2.87
277	278	1.336056	GCTCTGTCGTCGTTTCCTTCT	60.336	52.381	0.00	0.00	0.00	2.85
278	279	1.061485	GCTCTGTCGTCGTTTCCTTC	58.939	55.000	0.00	0.00	0.00	3.46
279	280	0.387929	TGCTCTGTCGTCGTTTCCTT	59.612	50.000	0.00	0.00	0.00	3.36
280	281	0.318784	GTGCTCTGTCGTCGTTTCCT	60.319	55.000	0.00	0.00	0.00	3.36
281	282	1.282930	GGTGCTCTGTCGTCGTTTCC	61.283	60.000	0.00	0.00	0.00	3.13
282	283	0.596600	TGGTGCTCTGTCGTCGTTTC	60.597	55.000	0.00	0.00	0.00	2.78
283	284	0.874607	GTGGTGCTCTGTCGTCGTTT	60.875	55.000	0.00	0.00	0.00	3.60
284	285	1.299926	GTGGTGCTCTGTCGTCGTT	60.300	57.895	0.00	0.00	0.00	3.85
285	286	2.335369	GTGGTGCTCTGTCGTCGT	59.665	61.111	0.00	0.00	0.00	4.34
286	287	2.430921	GGTGGTGCTCTGTCGTCG	60.431	66.667	0.00	0.00	0.00	5.12
287	288	0.737715	GATGGTGGTGCTCTGTCGTC	60.738	60.000	0.00	0.00	0.00	4.20
288	289	1.293498	GATGGTGGTGCTCTGTCGT	59.707	57.895	0.00	0.00	0.00	4.34
289	290	1.807165	CGATGGTGGTGCTCTGTCG	60.807	63.158	0.00	0.00	0.00	4.35
290	291	0.737715	GACGATGGTGGTGCTCTGTC	60.738	60.000	0.00	0.00	0.00	3.51
291	292	1.293498	GACGATGGTGGTGCTCTGT	59.707	57.895	0.00	0.00	0.00	3.41
292	293	1.448540	GGACGATGGTGGTGCTCTG	60.449	63.158	0.00	0.00	0.00	3.35
293	294	2.982130	GGACGATGGTGGTGCTCT	59.018	61.111	0.00	0.00	0.00	4.09
294	295	2.509336	CGGACGATGGTGGTGCTC	60.509	66.667	0.00	0.00	0.00	4.26
295	296	4.760047	GCGGACGATGGTGGTGCT	62.760	66.667	0.00	0.00	0.00	4.40
297	298	3.892740	TTGGCGGACGATGGTGGTG	62.893	63.158	0.00	0.00	0.00	4.17
298	299	3.605749	CTTGGCGGACGATGGTGGT	62.606	63.158	0.00	0.00	0.00	4.16
299	300	2.819595	CTTGGCGGACGATGGTGG	60.820	66.667	0.00	0.00	0.00	4.61
300	301	2.100631	GTCTTGGCGGACGATGGTG	61.101	63.158	0.00	0.00	0.00	4.17
301	302	2.264794	GTCTTGGCGGACGATGGT	59.735	61.111	0.00	0.00	0.00	3.55
302	303	2.511600	GGTCTTGGCGGACGATGG	60.512	66.667	0.00	0.00	37.12	3.51
303	304	2.885644	CGGTCTTGGCGGACGATG	60.886	66.667	0.00	0.00	37.12	3.84
304	305	4.814294	GCGGTCTTGGCGGACGAT	62.814	66.667	0.00	0.00	37.12	3.73
307	308	4.681978	ACTGCGGTCTTGGCGGAC	62.682	66.667	0.00	2.43	40.04	4.79
308	309	4.373116	GACTGCGGTCTTGGCGGA	62.373	66.667	18.76	0.00	40.04	5.54
309	310	4.680237	TGACTGCGGTCTTGGCGG	62.680	66.667	25.54	0.00	42.54	6.13
310	311	3.114616	CTGACTGCGGTCTTGGCG	61.115	66.667	25.54	6.23	42.54	5.69
311	312	2.743928	CCTGACTGCGGTCTTGGC	60.744	66.667	25.54	0.48	42.54	4.52
312	313	2.743928	GCCTGACTGCGGTCTTGG	60.744	66.667	25.54	24.94	42.54	3.61
320	321	0.874390	TGAAAATCACGCCTGACTGC	59.126	50.000	0.00	0.00	0.00	4.40
321	322	2.601481	GTGAAAATCACGCCTGACTG	57.399	50.000	0.00	0.00	37.67	3.51
330	331	2.825086	CGGATTCCGGTGAAAATCAC	57.175	50.000	17.53	1.88	46.23	3.06
341	342	3.943479	TGGGACAACGCGGATTCCG	62.943	63.158	20.82	20.82	43.75	4.30
342	343	2.046700	TGGGACAACGCGGATTCC	60.047	61.111	12.47	12.40	31.92	3.01
353	354	3.390521	AGCCGCGAGATTGGGACA	61.391	61.111	8.23	0.00	0.00	4.02
354	355	2.892425	CAGCCGCGAGATTGGGAC	60.892	66.667	8.23	0.00	0.00	4.46
355	356	3.074369	TCAGCCGCGAGATTGGGA	61.074	61.111	8.23	0.00	0.00	4.37
356	357	2.892425	GTCAGCCGCGAGATTGGG	60.892	66.667	8.23	0.00	0.00	4.12
357	358	2.169789	CAGTCAGCCGCGAGATTGG	61.170	63.158	8.23	0.00	0.00	3.16
358	359	2.169789	CCAGTCAGCCGCGAGATTG	61.170	63.158	8.23	9.58	0.00	2.67
359	360	1.888436	TTCCAGTCAGCCGCGAGATT	61.888	55.000	8.23	0.00	0.00	2.40
360	361	1.680522	ATTCCAGTCAGCCGCGAGAT	61.681	55.000	8.23	0.00	0.00	2.75
361	362	2.284798	GATTCCAGTCAGCCGCGAGA	62.285	60.000	8.23	0.00	0.00	4.04
362	363	1.880340	GATTCCAGTCAGCCGCGAG	60.880	63.158	8.23	0.00	0.00	5.03
363	364	2.184322	GATTCCAGTCAGCCGCGA	59.816	61.111	8.23	0.00	0.00	5.87
364	365	3.257561	CGATTCCAGTCAGCCGCG	61.258	66.667	0.00	0.00	0.00	6.46
365	366	3.567797	GCGATTCCAGTCAGCCGC	61.568	66.667	0.00	0.00	35.91	6.53
366	367	2.125552	TGCGATTCCAGTCAGCCG	60.126	61.111	0.00	0.00	0.00	5.52
367	368	1.364626	CTGTGCGATTCCAGTCAGCC	61.365	60.000	0.00	0.00	0.00	4.85
368	369	0.390340	TCTGTGCGATTCCAGTCAGC	60.390	55.000	0.00	0.00	0.00	4.26
369	370	1.638133	CTCTGTGCGATTCCAGTCAG	58.362	55.000	0.00	0.00	0.00	3.51
370	371	0.390340	GCTCTGTGCGATTCCAGTCA	60.390	55.000	0.00	0.00	0.00	3.41
371	372	1.086634	GGCTCTGTGCGATTCCAGTC	61.087	60.000	0.00	0.00	44.05	3.51
372	373	1.078848	GGCTCTGTGCGATTCCAGT	60.079	57.895	0.00	0.00	44.05	4.00
373	374	0.809241	GAGGCTCTGTGCGATTCCAG	60.809	60.000	7.40	0.00	44.05	3.86
374	375	1.219124	GAGGCTCTGTGCGATTCCA	59.781	57.895	7.40	0.00	44.05	3.53
375	376	1.880340	CGAGGCTCTGTGCGATTCC	60.880	63.158	13.50	0.00	44.05	3.01
376	377	2.520904	GCGAGGCTCTGTGCGATTC	61.521	63.158	13.50	0.00	44.05	2.52
377	378	2.510238	GCGAGGCTCTGTGCGATT	60.510	61.111	13.50	0.00	44.05	3.34
378	379	4.521062	GGCGAGGCTCTGTGCGAT	62.521	66.667	13.50	0.00	44.05	4.58
380	381	4.827087	ATGGCGAGGCTCTGTGCG	62.827	66.667	13.50	0.00	44.05	5.34
381	382	3.200593	CATGGCGAGGCTCTGTGC	61.201	66.667	13.50	8.63	41.94	4.57
382	383	1.078918	TTCATGGCGAGGCTCTGTG	60.079	57.895	13.50	6.01	0.00	3.66
383	384	1.220206	CTTCATGGCGAGGCTCTGT	59.780	57.895	13.50	0.00	0.00	3.41
384	385	0.809241	GTCTTCATGGCGAGGCTCTG	60.809	60.000	13.50	7.43	0.00	3.35
385	386	1.519719	GTCTTCATGGCGAGGCTCT	59.480	57.895	13.50	0.00	0.00	4.09
386	387	4.116878	GTCTTCATGGCGAGGCTC	57.883	61.111	3.87	3.87	0.00	4.70
393	394	3.351020	ACTCGTATACGTCTTCATGGC	57.649	47.619	23.67	0.00	40.80	4.40
394	395	5.813717	TGTTACTCGTATACGTCTTCATGG	58.186	41.667	23.67	8.37	40.80	3.66
395	396	7.268659	GCTATGTTACTCGTATACGTCTTCATG	59.731	40.741	23.67	15.82	40.80	3.07
396	397	7.172875	AGCTATGTTACTCGTATACGTCTTCAT	59.827	37.037	23.67	21.07	40.80	2.57
397	398	6.481313	AGCTATGTTACTCGTATACGTCTTCA	59.519	38.462	23.67	16.80	40.80	3.02
398	399	6.886307	AGCTATGTTACTCGTATACGTCTTC	58.114	40.000	23.67	12.48	40.80	2.87
399	400	6.857777	AGCTATGTTACTCGTATACGTCTT	57.142	37.500	23.67	12.12	40.80	3.01
400	401	7.151308	ACTAGCTATGTTACTCGTATACGTCT	58.849	38.462	23.67	12.78	40.80	4.18
401	402	7.344910	ACTAGCTATGTTACTCGTATACGTC	57.655	40.000	23.67	11.28	40.80	4.34
402	403	7.721286	AACTAGCTATGTTACTCGTATACGT	57.279	36.000	23.67	9.25	40.80	3.57
426	427	9.895138	TGTGTGATGTTACTCATACTAGTAGTA	57.105	33.333	12.38	12.38	37.92	1.82
427	428	8.803397	TGTGTGATGTTACTCATACTAGTAGT	57.197	34.615	8.85	8.14	37.92	2.73
433	434	9.755804	CTTGATATGTGTGATGTTACTCATACT	57.244	33.333	10.75	3.32	38.84	2.12
434	435	8.982685	CCTTGATATGTGTGATGTTACTCATAC	58.017	37.037	0.00	5.35	38.84	2.39
435	436	7.657354	GCCTTGATATGTGTGATGTTACTCATA	59.343	37.037	0.00	0.00	39.73	2.15
436	437	6.484643	GCCTTGATATGTGTGATGTTACTCAT	59.515	38.462	0.00	0.00	38.11	2.90
437	438	5.817296	GCCTTGATATGTGTGATGTTACTCA	59.183	40.000	0.00	0.00	0.00	3.41
438	439	5.817296	TGCCTTGATATGTGTGATGTTACTC	59.183	40.000	0.00	0.00	0.00	2.59
439	440	5.744171	TGCCTTGATATGTGTGATGTTACT	58.256	37.500	0.00	0.00	0.00	2.24
440	441	6.316140	TCTTGCCTTGATATGTGTGATGTTAC	59.684	38.462	0.00	0.00	0.00	2.50
441	442	6.413892	TCTTGCCTTGATATGTGTGATGTTA	58.586	36.000	0.00	0.00	0.00	2.41
442	443	5.255687	TCTTGCCTTGATATGTGTGATGTT	58.744	37.500	0.00	0.00	0.00	2.71
443	444	4.847198	TCTTGCCTTGATATGTGTGATGT	58.153	39.130	0.00	0.00	0.00	3.06
444	445	5.529800	TCATCTTGCCTTGATATGTGTGATG	59.470	40.000	0.00	0.00	0.00	3.07
445	446	5.687780	TCATCTTGCCTTGATATGTGTGAT	58.312	37.500	0.00	0.00	0.00	3.06
446	447	5.101648	TCATCTTGCCTTGATATGTGTGA	57.898	39.130	0.00	0.00	0.00	3.58
447	448	4.880120	ACTCATCTTGCCTTGATATGTGTG	59.120	41.667	0.00	0.00	0.00	3.82
448	449	5.104610	AGACTCATCTTGCCTTGATATGTGT	60.105	40.000	0.00	0.00	0.00	3.72
449	450	5.366460	AGACTCATCTTGCCTTGATATGTG	58.634	41.667	0.00	0.00	0.00	3.21
450	451	5.627182	AGACTCATCTTGCCTTGATATGT	57.373	39.130	0.00	0.00	0.00	2.29
451	452	7.980662	CCTATAGACTCATCTTGCCTTGATATG	59.019	40.741	0.00	0.00	36.29	1.78
452	453	7.364585	GCCTATAGACTCATCTTGCCTTGATAT	60.365	40.741	0.00	0.00	36.29	1.63
453	454	6.071108	GCCTATAGACTCATCTTGCCTTGATA	60.071	42.308	0.00	0.00	36.29	2.15
454	455	5.279910	GCCTATAGACTCATCTTGCCTTGAT	60.280	44.000	0.00	0.00	36.29	2.57
455	456	4.039730	GCCTATAGACTCATCTTGCCTTGA	59.960	45.833	0.00	0.00	36.29	3.02
456	457	4.040217	AGCCTATAGACTCATCTTGCCTTG	59.960	45.833	0.00	0.00	36.29	3.61
457	458	4.230455	AGCCTATAGACTCATCTTGCCTT	58.770	43.478	0.00	0.00	36.29	4.35
458	459	3.855668	AGCCTATAGACTCATCTTGCCT	58.144	45.455	0.00	0.00	36.29	4.75
459	460	5.730296	TTAGCCTATAGACTCATCTTGCC	57.270	43.478	0.00	0.00	36.29	4.52
460	461	9.883142	ATTTATTAGCCTATAGACTCATCTTGC	57.117	33.333	0.00	0.00	36.29	4.01
475	476	9.135843	GAAACGCAAAACTTTATTTATTAGCCT	57.864	29.630	0.00	0.00	0.00	4.58
476	477	8.917655	TGAAACGCAAAACTTTATTTATTAGCC	58.082	29.630	0.00	0.00	0.00	3.93
477	478	9.721933	GTGAAACGCAAAACTTTATTTATTAGC	57.278	29.630	0.00	0.00	0.00	3.09
479	480	9.745880	TGGTGAAACGCAAAACTTTATTTATTA	57.254	25.926	0.00	0.00	38.12	0.98
480	481	8.544597	GTGGTGAAACGCAAAACTTTATTTATT	58.455	29.630	0.00	0.00	38.12	1.40
481	482	7.707035	TGTGGTGAAACGCAAAACTTTATTTAT	59.293	29.630	0.00	0.00	38.12	1.40
482	483	7.009357	GTGTGGTGAAACGCAAAACTTTATTTA	59.991	33.333	0.00	0.00	38.12	1.40
483	484	5.869888	TGTGGTGAAACGCAAAACTTTATTT	59.130	32.000	0.00	0.00	38.12	1.40
484	485	5.289917	GTGTGGTGAAACGCAAAACTTTATT	59.710	36.000	0.00	0.00	38.12	1.40
485	486	4.801516	GTGTGGTGAAACGCAAAACTTTAT	59.198	37.500	0.00	0.00	38.12	1.40
486	487	4.167268	GTGTGGTGAAACGCAAAACTTTA	58.833	39.130	0.00	0.00	38.12	1.85
487	488	2.990514	GTGTGGTGAAACGCAAAACTTT	59.009	40.909	0.00	0.00	38.12	2.66
488	489	2.029828	TGTGTGGTGAAACGCAAAACTT	60.030	40.909	0.00	0.00	37.61	2.66
489	490	1.542030	TGTGTGGTGAAACGCAAAACT	59.458	42.857	0.00	0.00	37.61	2.66
490	491	1.983972	TGTGTGGTGAAACGCAAAAC	58.016	45.000	0.00	0.00	37.61	2.43
491	492	2.949451	ATGTGTGGTGAAACGCAAAA	57.051	40.000	0.00	0.00	43.32	2.44
492	493	3.316588	ACATATGTGTGGTGAAACGCAAA	59.683	39.130	7.78	0.00	43.32	3.68
493	494	2.881513	ACATATGTGTGGTGAAACGCAA	59.118	40.909	7.78	0.00	43.32	4.85
494	495	2.499197	ACATATGTGTGGTGAAACGCA	58.501	42.857	7.78	0.00	44.15	5.24
495	496	3.552604	AACATATGTGTGGTGAAACGC	57.447	42.857	9.63	0.00	38.92	4.84
496	497	5.163893	GGAGTAACATATGTGTGGTGAAACG	60.164	44.000	9.63	0.00	38.92	3.60
497	498	5.938125	AGGAGTAACATATGTGTGGTGAAAC	59.062	40.000	9.63	0.00	38.92	2.78
498	499	6.121776	AGGAGTAACATATGTGTGGTGAAA	57.878	37.500	9.63	0.00	38.92	2.69
499	500	5.247337	TGAGGAGTAACATATGTGTGGTGAA	59.753	40.000	9.63	0.00	38.92	3.18
500	501	4.775253	TGAGGAGTAACATATGTGTGGTGA	59.225	41.667	9.63	0.00	38.92	4.02
501	502	4.870426	GTGAGGAGTAACATATGTGTGGTG	59.130	45.833	9.63	0.00	38.92	4.17
502	503	4.777896	AGTGAGGAGTAACATATGTGTGGT	59.222	41.667	9.63	0.00	38.92	4.16
503	504	5.344743	AGTGAGGAGTAACATATGTGTGG	57.655	43.478	9.63	0.00	38.92	4.17
504	505	9.067986	TCTATAGTGAGGAGTAACATATGTGTG	57.932	37.037	9.63	0.00	38.92	3.82
505	506	9.642343	TTCTATAGTGAGGAGTAACATATGTGT	57.358	33.333	9.63	2.63	41.28	3.72
507	508	9.869667	ACTTCTATAGTGAGGAGTAACATATGT	57.130	33.333	1.41	1.41	33.17	2.29
531	532	9.917887	ACCATGTTACTACTCTATGTTACTACT	57.082	33.333	0.00	0.00	0.00	2.57
533	534	9.910267	TGACCATGTTACTACTCTATGTTACTA	57.090	33.333	0.00	0.00	0.00	1.82
534	535	8.818622	TGACCATGTTACTACTCTATGTTACT	57.181	34.615	0.00	0.00	0.00	2.24
535	536	9.464714	CATGACCATGTTACTACTCTATGTTAC	57.535	37.037	1.98	0.00	34.23	2.50
558	559	9.674824	CGGGTAGTAAAATAGAGTAGTAACATG	57.325	37.037	0.00	0.00	0.00	3.21
559	560	8.355913	GCGGGTAGTAAAATAGAGTAGTAACAT	58.644	37.037	0.00	0.00	0.00	2.71
560	561	7.557719	AGCGGGTAGTAAAATAGAGTAGTAACA	59.442	37.037	0.00	0.00	0.00	2.41
561	562	7.859875	CAGCGGGTAGTAAAATAGAGTAGTAAC	59.140	40.741	0.00	0.00	0.00	2.50
562	563	7.557719	ACAGCGGGTAGTAAAATAGAGTAGTAA	59.442	37.037	0.00	0.00	0.00	2.24
563	564	7.012704	CACAGCGGGTAGTAAAATAGAGTAGTA	59.987	40.741	0.00	0.00	0.00	1.82
564	565	5.890419	ACAGCGGGTAGTAAAATAGAGTAGT	59.110	40.000	0.00	0.00	0.00	2.73
565	566	6.207213	CACAGCGGGTAGTAAAATAGAGTAG	58.793	44.000	0.00	0.00	0.00	2.57
566	567	5.068198	CCACAGCGGGTAGTAAAATAGAGTA	59.932	44.000	0.00	0.00	0.00	2.59
567	568	4.142004	CCACAGCGGGTAGTAAAATAGAGT	60.142	45.833	0.00	0.00	0.00	3.24
568	569	4.369182	CCACAGCGGGTAGTAAAATAGAG	58.631	47.826	0.00	0.00	0.00	2.43
569	570	3.431207	GCCACAGCGGGTAGTAAAATAGA	60.431	47.826	0.00	0.00	34.06	1.98
570	571	2.870411	GCCACAGCGGGTAGTAAAATAG	59.130	50.000	0.00	0.00	34.06	1.73
571	572	2.420408	GGCCACAGCGGGTAGTAAAATA	60.420	50.000	0.00	0.00	41.24	1.40
572	573	1.680860	GGCCACAGCGGGTAGTAAAAT	60.681	52.381	0.00	0.00	41.24	1.82
573	574	0.321830	GGCCACAGCGGGTAGTAAAA	60.322	55.000	0.00	0.00	41.24	1.52
574	575	1.297364	GGCCACAGCGGGTAGTAAA	59.703	57.895	0.00	0.00	41.24	2.01
575	576	1.895020	CTGGCCACAGCGGGTAGTAA	61.895	60.000	0.00	0.00	41.24	2.24
576	577	2.284039	TGGCCACAGCGGGTAGTA	60.284	61.111	0.00	0.00	41.24	1.82
577	578	3.706373	CTGGCCACAGCGGGTAGT	61.706	66.667	0.00	0.00	41.24	2.73
586	587	1.301401	GCGTGTAAGACTGGCCACA	60.301	57.895	0.00	0.00	0.00	4.17
593	594	2.488545	AGTCGATTGAGCGTGTAAGACT	59.511	45.455	0.00	0.37	33.47	3.24
595	596	4.690184	TTAGTCGATTGAGCGTGTAAGA	57.310	40.909	0.00	0.00	0.00	2.10
722	726	3.374988	GGGAAAATTACGAAACTACCCGG	59.625	47.826	0.00	0.00	0.00	5.73
744	748	5.049543	CGTTCTATAGTTCTAGGGACTTCCG	60.050	48.000	0.00	0.00	41.75	4.30
856	861	8.899887	ATAAAAAGATGAAGGAAGGGAAATGA	57.100	30.769	0.00	0.00	0.00	2.57
858	863	7.615757	ACGATAAAAAGATGAAGGAAGGGAAAT	59.384	33.333	0.00	0.00	0.00	2.17
891	896	6.037062	CCATGTGCGTCTTCATTTGTAGATAA	59.963	38.462	0.00	0.00	0.00	1.75
1003	1014	2.924421	CCTATTTCTTCCCACTCCAGC	58.076	52.381	0.00	0.00	0.00	4.85
1352	1367	2.039480	TGGAGCTAGGCATCATTGGATC	59.961	50.000	0.00	0.00	0.00	3.36
1461	1508	5.090139	GGAGATGGGATGAGAGGAAGATAA	58.910	45.833	0.00	0.00	0.00	1.75
1769	1816	0.464036	AGGCGCTGTTTATCGGATCA	59.536	50.000	7.64	0.00	0.00	2.92
1778	1825	0.682852	TGTAGTGGTAGGCGCTGTTT	59.317	50.000	7.64	0.00	0.00	2.83
1824	1871	2.184448	CAAACAACACAACAGCCGAAG	58.816	47.619	0.00	0.00	0.00	3.79
1825	1872	1.734047	GCAAACAACACAACAGCCGAA	60.734	47.619	0.00	0.00	0.00	4.30
1832	1879	5.136711	GTCAAAACAAGCAAACAACACAAC	58.863	37.500	0.00	0.00	0.00	3.32
1847	1894	3.623960	ACTCCATTTTCGTCGTCAAAACA	59.376	39.130	0.00	0.00	0.00	2.83
1860	1907	7.944729	ATCTAGCACATAAACACTCCATTTT	57.055	32.000	0.00	0.00	0.00	1.82
1974	2057	4.663334	TCGATAAGCTAGAGATGGCCTTA	58.337	43.478	3.32	0.00	0.00	2.69
1975	2058	3.501349	TCGATAAGCTAGAGATGGCCTT	58.499	45.455	3.32	0.00	0.00	4.35
2212	2295	1.100510	GCCCTTCGTATTTTGGGTCC	58.899	55.000	0.00	0.00	41.59	4.46
2231	2314	6.651975	ATAGGTACTCTCTTCGTTATTGGG	57.348	41.667	0.00	0.00	41.75	4.12
2261	2344	5.246656	TGAGACTAATAAACCCAAACGGAGA	59.753	40.000	0.00	0.00	34.64	3.71
2287	2370	8.417106	TGTAGTCAAAATTTGCTCCAAAATACA	58.583	29.630	0.00	0.62	36.90	2.29
2288	2371	8.810652	TGTAGTCAAAATTTGCTCCAAAATAC	57.189	30.769	0.00	0.00	36.90	1.89
2296	2379	9.846248	AGTCAAATATGTAGTCAAAATTTGCTC	57.154	29.630	0.00	0.00	38.89	4.26
2439	2569	9.110502	GGTTTACTCATCTCCTTGTATTTTAGG	57.889	37.037	0.00	0.00	0.00	2.69
2449	2579	5.032846	TCATCCTGGTTTACTCATCTCCTT	58.967	41.667	0.00	0.00	0.00	3.36
2452	2582	5.860941	TCTCATCCTGGTTTACTCATCTC	57.139	43.478	0.00	0.00	0.00	2.75
2453	2583	6.183361	GGAATCTCATCCTGGTTTACTCATCT	60.183	42.308	0.00	0.00	36.50	2.90
2455	2585	5.934781	GGAATCTCATCCTGGTTTACTCAT	58.065	41.667	0.00	0.00	36.50	2.90
2456	2586	5.359194	GGAATCTCATCCTGGTTTACTCA	57.641	43.478	0.00	0.00	36.50	3.41
2467	2598	3.238597	ACAGCCTAGAGGAATCTCATCC	58.761	50.000	0.00	0.00	42.34	3.51
2468	2599	4.630111	CAACAGCCTAGAGGAATCTCATC	58.370	47.826	0.00	0.00	42.34	2.92
2472	2603	2.476199	AGCAACAGCCTAGAGGAATCT	58.524	47.619	0.00	0.00	37.39	2.40
2516	2664	7.178628	AGACAGTTAGTGGATAAAGCTTGACTA	59.821	37.037	0.00	0.00	0.00	2.59
2550	2698	7.866393	GGTACTACGTAACATGATTAATCTGCT	59.134	37.037	16.24	6.55	0.00	4.24
2554	2702	7.664758	AGGGGTACTACGTAACATGATTAATC	58.335	38.462	8.60	8.60	0.00	1.75
2555	2703	7.256083	GGAGGGGTACTACGTAACATGATTAAT	60.256	40.741	0.00	0.00	0.00	1.40
2556	2704	6.040842	GGAGGGGTACTACGTAACATGATTAA	59.959	42.308	0.00	0.00	0.00	1.40
2557	2705	5.536161	GGAGGGGTACTACGTAACATGATTA	59.464	44.000	0.00	0.00	0.00	1.75
2558	2706	4.343239	GGAGGGGTACTACGTAACATGATT	59.657	45.833	0.00	0.00	0.00	2.57
2576	2724	5.634020	CGCTCTTATATCTTTTTACGGAGGG	59.366	44.000	0.00	0.00	0.00	4.30
2577	2725	6.214399	ACGCTCTTATATCTTTTTACGGAGG	58.786	40.000	0.00	0.00	0.00	4.30
2578	2726	7.695869	AACGCTCTTATATCTTTTTACGGAG	57.304	36.000	0.00	0.00	0.00	4.63
2579	2727	9.241317	CTAAACGCTCTTATATCTTTTTACGGA	57.759	33.333	0.00	0.00	0.00	4.69
2580	2728	9.241317	TCTAAACGCTCTTATATCTTTTTACGG	57.759	33.333	0.00	0.00	0.00	4.02
2644	2792	9.667107	CCTACCAAATTTGATACTTCTTCTGTA	57.333	33.333	19.86	7.39	0.00	2.74
2645	2793	8.164070	ACCTACCAAATTTGATACTTCTTCTGT	58.836	33.333	19.86	6.64	0.00	3.41
2646	2794	8.567285	ACCTACCAAATTTGATACTTCTTCTG	57.433	34.615	19.86	0.77	0.00	3.02
2680	2828	7.954835	TCCAGAAGTCAAAATTCAATCATGTT	58.045	30.769	0.00	0.00	0.00	2.71
2747	2895	1.883732	CTGGTCGGATGACTGTCGT	59.116	57.895	1.35	1.35	44.83	4.34
2764	2912	2.689034	AAAGGGAGCTAGGCCGCT	60.689	61.111	4.64	4.64	44.33	5.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.