Multiple sequence alignment - TraesCS7D01G246300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G246300 chr7D 100.000 3095 0 0 1 3095 215228340 215225246 0.000000e+00 5716
1 TraesCS7D01G246300 chr7D 93.333 270 18 0 1 270 572981857 572981588 1.730000e-107 399
2 TraesCS7D01G246300 chr7A 92.314 2615 139 33 514 3095 228490748 228488163 0.000000e+00 3659
3 TraesCS7D01G246300 chr7B 95.835 2017 66 9 853 2855 185300324 185298312 0.000000e+00 3243
4 TraesCS7D01G246300 chr7B 87.657 478 55 3 270 744 184563108 184563584 1.250000e-153 553
5 TraesCS7D01G246300 chr7B 94.000 200 7 3 2896 3095 185298017 185297823 6.490000e-77 298
6 TraesCS7D01G246300 chr7B 79.874 159 22 8 2749 2903 608365602 608365754 1.170000e-19 108
7 TraesCS7D01G246300 chr1D 94.424 269 15 0 1 269 276910223 276909955 6.170000e-112 414
8 TraesCS7D01G246300 chr1D 80.702 171 17 8 2749 2903 269786421 269786591 5.420000e-23 119
9 TraesCS7D01G246300 chr3D 93.962 265 16 0 6 270 120962399 120962663 4.810000e-108 401
10 TraesCS7D01G246300 chr2D 93.358 271 18 0 1 271 504056740 504057010 4.810000e-108 401
11 TraesCS7D01G246300 chr2D 93.333 270 18 0 1 270 455357601 455357870 1.730000e-107 399
12 TraesCS7D01G246300 chr6D 93.333 270 18 0 1 270 73076063 73076332 1.730000e-107 399
13 TraesCS7D01G246300 chr6D 93.333 270 18 0 1 270 363742299 363742030 1.730000e-107 399
14 TraesCS7D01G246300 chr5D 93.015 272 19 0 1 272 250317640 250317911 6.220000e-107 398
15 TraesCS7D01G246300 chr3A 93.333 270 17 1 1 270 567534043 567534311 6.220000e-107 398
16 TraesCS7D01G246300 chr3A 87.611 113 10 2 2804 2912 371262113 371262001 9.010000e-26 128
17 TraesCS7D01G246300 chr4D 84.524 168 22 2 2749 2912 40175517 40175350 2.470000e-36 163
18 TraesCS7D01G246300 chr4D 88.462 104 6 3 2804 2903 60365051 60365152 1.510000e-23 121
19 TraesCS7D01G246300 chr4A 86.726 113 11 2 2804 2912 111592083 111591971 4.190000e-24 122
20 TraesCS7D01G246300 chr2B 88.462 104 7 3 2804 2903 361859400 361859502 1.510000e-23 121
21 TraesCS7D01G246300 chr1A 88.462 104 7 3 2804 2903 327491729 327491831 1.510000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G246300 chr7D 215225246 215228340 3094 True 5716.0 5716 100.0000 1 3095 1 chr7D.!!$R1 3094
1 TraesCS7D01G246300 chr7A 228488163 228490748 2585 True 3659.0 3659 92.3140 514 3095 1 chr7A.!!$R1 2581
2 TraesCS7D01G246300 chr7B 185297823 185300324 2501 True 1770.5 3243 94.9175 853 3095 2 chr7B.!!$R1 2242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 669 0.036010 CCACAAGGACGAGCTCCAAT 60.036 55.0 8.47 0.0 42.46 3.16 F
675 677 0.109086 ACGAGCTCCAATGACGACAG 60.109 55.0 8.47 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 1911 0.732538 GCTTACCATTGCCGCACAAC 60.733 55.000 0.0 0.0 42.27 3.32 R
2187 2211 3.039011 ACTCGGCACCATATAAACTCCT 58.961 45.455 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.717701 GGGCCCCCTCTAGTACTTAT 57.282 55.000 12.23 0.00 0.00 1.73
20 21 2.987430 GGGCCCCCTCTAGTACTTATT 58.013 52.381 12.23 0.00 0.00 1.40
21 22 2.638363 GGGCCCCCTCTAGTACTTATTG 59.362 54.545 12.23 0.00 0.00 1.90
22 23 2.638363 GGCCCCCTCTAGTACTTATTGG 59.362 54.545 0.00 0.00 0.00 3.16
23 24 2.038689 GCCCCCTCTAGTACTTATTGGC 59.961 54.545 0.00 2.90 0.00 4.52
24 25 3.588569 CCCCCTCTAGTACTTATTGGCT 58.411 50.000 0.00 0.00 0.00 4.75
25 26 3.579151 CCCCCTCTAGTACTTATTGGCTC 59.421 52.174 0.00 0.00 0.00 4.70
26 27 3.579151 CCCCTCTAGTACTTATTGGCTCC 59.421 52.174 0.00 0.00 0.00 4.70
27 28 4.223953 CCCTCTAGTACTTATTGGCTCCA 58.776 47.826 0.00 0.00 0.00 3.86
28 29 4.654262 CCCTCTAGTACTTATTGGCTCCAA 59.346 45.833 0.00 3.55 40.47 3.53
29 30 5.308237 CCCTCTAGTACTTATTGGCTCCAAT 59.692 44.000 17.25 17.25 46.85 3.16
30 31 6.497259 CCCTCTAGTACTTATTGGCTCCAATA 59.503 42.308 15.37 15.37 43.92 1.90
31 32 7.181125 CCCTCTAGTACTTATTGGCTCCAATAT 59.819 40.741 18.87 10.03 44.99 1.28
32 33 8.598041 CCTCTAGTACTTATTGGCTCCAATATT 58.402 37.037 18.87 12.80 44.99 1.28
33 34 9.646427 CTCTAGTACTTATTGGCTCCAATATTC 57.354 37.037 18.87 11.18 44.99 1.75
34 35 8.594550 TCTAGTACTTATTGGCTCCAATATTCC 58.405 37.037 18.87 9.72 44.99 3.01
35 36 7.394144 AGTACTTATTGGCTCCAATATTCCT 57.606 36.000 18.87 11.31 44.99 3.36
36 37 7.454225 AGTACTTATTGGCTCCAATATTCCTC 58.546 38.462 18.87 10.67 44.99 3.71
37 38 6.266131 ACTTATTGGCTCCAATATTCCTCA 57.734 37.500 18.87 5.55 44.99 3.86
38 39 6.672593 ACTTATTGGCTCCAATATTCCTCAA 58.327 36.000 18.87 6.43 44.99 3.02
39 40 7.125391 ACTTATTGGCTCCAATATTCCTCAAA 58.875 34.615 18.87 5.84 44.99 2.69
40 41 7.786464 ACTTATTGGCTCCAATATTCCTCAAAT 59.214 33.333 18.87 0.00 44.99 2.32
41 42 9.300681 CTTATTGGCTCCAATATTCCTCAAATA 57.699 33.333 18.87 3.21 44.99 1.40
42 43 9.827198 TTATTGGCTCCAATATTCCTCAAATAT 57.173 29.630 18.87 0.00 44.99 1.28
43 44 8.731591 ATTGGCTCCAATATTCCTCAAATATT 57.268 30.769 12.15 0.00 46.74 1.28
44 45 8.551682 TTGGCTCCAATATTCCTCAAATATTT 57.448 30.769 0.00 0.00 44.55 1.40
45 46 8.181904 TGGCTCCAATATTCCTCAAATATTTC 57.818 34.615 0.00 0.00 44.55 2.17
46 47 7.784073 TGGCTCCAATATTCCTCAAATATTTCA 59.216 33.333 0.00 0.00 44.55 2.69
47 48 8.810041 GGCTCCAATATTCCTCAAATATTTCAT 58.190 33.333 0.00 0.00 44.55 2.57
71 72 4.489679 AAAATCTCCGTGAAGTTTCAGC 57.510 40.909 0.00 0.00 37.98 4.26
72 73 3.409026 AATCTCCGTGAAGTTTCAGCT 57.591 42.857 0.00 0.00 37.98 4.24
73 74 2.910688 TCTCCGTGAAGTTTCAGCTT 57.089 45.000 0.00 0.00 37.98 3.74
74 75 2.483876 TCTCCGTGAAGTTTCAGCTTG 58.516 47.619 0.00 0.00 37.98 4.01
75 76 2.158957 TCTCCGTGAAGTTTCAGCTTGT 60.159 45.455 0.00 0.00 37.98 3.16
76 77 2.614057 CTCCGTGAAGTTTCAGCTTGTT 59.386 45.455 0.00 0.00 37.98 2.83
77 78 3.013921 TCCGTGAAGTTTCAGCTTGTTT 58.986 40.909 0.00 0.00 37.98 2.83
78 79 3.108144 CCGTGAAGTTTCAGCTTGTTTG 58.892 45.455 0.00 0.00 37.98 2.93
79 80 3.108144 CGTGAAGTTTCAGCTTGTTTGG 58.892 45.455 0.00 0.00 37.98 3.28
80 81 3.181501 CGTGAAGTTTCAGCTTGTTTGGA 60.182 43.478 0.00 0.00 37.98 3.53
81 82 4.354587 GTGAAGTTTCAGCTTGTTTGGAG 58.645 43.478 0.00 0.00 37.98 3.86
82 83 4.016444 TGAAGTTTCAGCTTGTTTGGAGT 58.984 39.130 0.00 0.00 32.50 3.85
83 84 4.462483 TGAAGTTTCAGCTTGTTTGGAGTT 59.538 37.500 0.00 0.00 32.50 3.01
84 85 4.376340 AGTTTCAGCTTGTTTGGAGTTG 57.624 40.909 0.00 0.00 0.00 3.16
85 86 3.763897 AGTTTCAGCTTGTTTGGAGTTGT 59.236 39.130 0.00 0.00 0.00 3.32
86 87 3.781079 TTCAGCTTGTTTGGAGTTGTG 57.219 42.857 0.00 0.00 0.00 3.33
87 88 1.405105 TCAGCTTGTTTGGAGTTGTGC 59.595 47.619 0.00 0.00 0.00 4.57
88 89 1.134753 CAGCTTGTTTGGAGTTGTGCA 59.865 47.619 0.00 0.00 0.00 4.57
89 90 1.406539 AGCTTGTTTGGAGTTGTGCAG 59.593 47.619 0.00 0.00 0.00 4.41
90 91 1.405105 GCTTGTTTGGAGTTGTGCAGA 59.595 47.619 0.00 0.00 0.00 4.26
91 92 2.159254 GCTTGTTTGGAGTTGTGCAGAA 60.159 45.455 0.00 0.00 0.00 3.02
92 93 3.491447 GCTTGTTTGGAGTTGTGCAGAAT 60.491 43.478 0.00 0.00 0.00 2.40
93 94 4.261572 GCTTGTTTGGAGTTGTGCAGAATA 60.262 41.667 0.00 0.00 0.00 1.75
94 95 5.437289 TTGTTTGGAGTTGTGCAGAATAG 57.563 39.130 0.00 0.00 0.00 1.73
95 96 4.713553 TGTTTGGAGTTGTGCAGAATAGA 58.286 39.130 0.00 0.00 0.00 1.98
96 97 5.316167 TGTTTGGAGTTGTGCAGAATAGAT 58.684 37.500 0.00 0.00 0.00 1.98
97 98 6.472016 TGTTTGGAGTTGTGCAGAATAGATA 58.528 36.000 0.00 0.00 0.00 1.98
98 99 6.595326 TGTTTGGAGTTGTGCAGAATAGATAG 59.405 38.462 0.00 0.00 0.00 2.08
99 100 4.697514 TGGAGTTGTGCAGAATAGATAGC 58.302 43.478 0.00 0.00 0.00 2.97
100 101 4.061596 GGAGTTGTGCAGAATAGATAGCC 58.938 47.826 0.00 0.00 0.00 3.93
101 102 4.202305 GGAGTTGTGCAGAATAGATAGCCT 60.202 45.833 0.00 0.00 0.00 4.58
102 103 4.701765 AGTTGTGCAGAATAGATAGCCTG 58.298 43.478 0.00 0.00 0.00 4.85
103 104 4.406972 AGTTGTGCAGAATAGATAGCCTGA 59.593 41.667 0.00 0.00 0.00 3.86
104 105 4.327982 TGTGCAGAATAGATAGCCTGAC 57.672 45.455 0.00 0.00 0.00 3.51
105 106 3.243535 TGTGCAGAATAGATAGCCTGACG 60.244 47.826 0.00 0.00 0.00 4.35
106 107 2.959030 TGCAGAATAGATAGCCTGACGT 59.041 45.455 0.00 0.00 0.00 4.34
107 108 4.023107 GTGCAGAATAGATAGCCTGACGTA 60.023 45.833 0.00 0.00 0.00 3.57
108 109 4.216472 TGCAGAATAGATAGCCTGACGTAG 59.784 45.833 0.00 0.00 0.00 3.51
109 110 4.728534 CAGAATAGATAGCCTGACGTAGC 58.271 47.826 0.00 0.00 0.00 3.58
110 111 4.457603 CAGAATAGATAGCCTGACGTAGCT 59.542 45.833 11.44 11.44 43.20 3.32
111 112 5.048364 CAGAATAGATAGCCTGACGTAGCTT 60.048 44.000 11.89 1.93 40.56 3.74
112 113 5.536916 AGAATAGATAGCCTGACGTAGCTTT 59.463 40.000 11.89 5.16 40.56 3.51
113 114 5.793030 ATAGATAGCCTGACGTAGCTTTT 57.207 39.130 11.89 1.98 40.56 2.27
114 115 4.048241 AGATAGCCTGACGTAGCTTTTC 57.952 45.455 11.89 9.74 40.56 2.29
115 116 2.667473 TAGCCTGACGTAGCTTTTCC 57.333 50.000 11.89 0.00 40.56 3.13
116 117 0.685097 AGCCTGACGTAGCTTTTCCA 59.315 50.000 0.00 0.00 35.22 3.53
117 118 1.079503 GCCTGACGTAGCTTTTCCAG 58.920 55.000 0.00 0.00 0.00 3.86
118 119 1.337823 GCCTGACGTAGCTTTTCCAGA 60.338 52.381 0.00 0.00 0.00 3.86
119 120 2.678190 GCCTGACGTAGCTTTTCCAGAT 60.678 50.000 0.00 0.00 0.00 2.90
120 121 3.190874 CCTGACGTAGCTTTTCCAGATC 58.809 50.000 0.00 0.00 0.00 2.75
121 122 3.190874 CTGACGTAGCTTTTCCAGATCC 58.809 50.000 0.00 0.00 0.00 3.36
122 123 2.565391 TGACGTAGCTTTTCCAGATCCA 59.435 45.455 0.00 0.00 0.00 3.41
123 124 3.190874 GACGTAGCTTTTCCAGATCCAG 58.809 50.000 0.00 0.00 0.00 3.86
124 125 2.832129 ACGTAGCTTTTCCAGATCCAGA 59.168 45.455 0.00 0.00 0.00 3.86
125 126 3.452627 ACGTAGCTTTTCCAGATCCAGAT 59.547 43.478 0.00 0.00 0.00 2.90
126 127 4.080863 ACGTAGCTTTTCCAGATCCAGATT 60.081 41.667 0.00 0.00 0.00 2.40
127 128 4.878397 CGTAGCTTTTCCAGATCCAGATTT 59.122 41.667 0.00 0.00 0.00 2.17
128 129 5.007136 CGTAGCTTTTCCAGATCCAGATTTC 59.993 44.000 0.00 0.00 0.00 2.17
129 130 4.276642 AGCTTTTCCAGATCCAGATTTCC 58.723 43.478 0.00 0.00 0.00 3.13
130 131 3.065925 GCTTTTCCAGATCCAGATTTCCG 59.934 47.826 0.00 0.00 0.00 4.30
131 132 3.281727 TTTCCAGATCCAGATTTCCGG 57.718 47.619 0.00 0.00 0.00 5.14
132 133 0.469917 TCCAGATCCAGATTTCCGGC 59.530 55.000 0.00 0.00 0.00 6.13
133 134 0.471617 CCAGATCCAGATTTCCGGCT 59.528 55.000 0.00 0.00 0.00 5.52
134 135 1.590932 CAGATCCAGATTTCCGGCTG 58.409 55.000 0.00 0.00 0.00 4.85
135 136 0.179034 AGATCCAGATTTCCGGCTGC 60.179 55.000 0.00 0.00 0.00 5.25
136 137 1.152881 ATCCAGATTTCCGGCTGCC 60.153 57.895 9.11 9.11 0.00 4.85
147 148 3.514417 GGCTGCCGAAATTCTCCC 58.486 61.111 1.35 0.00 0.00 4.30
148 149 1.077429 GGCTGCCGAAATTCTCCCT 60.077 57.895 1.35 0.00 0.00 4.20
149 150 1.098129 GGCTGCCGAAATTCTCCCTC 61.098 60.000 1.35 0.00 0.00 4.30
150 151 0.107459 GCTGCCGAAATTCTCCCTCT 60.107 55.000 0.00 0.00 0.00 3.69
151 152 1.680249 GCTGCCGAAATTCTCCCTCTT 60.680 52.381 0.00 0.00 0.00 2.85
152 153 2.716217 CTGCCGAAATTCTCCCTCTTT 58.284 47.619 0.00 0.00 0.00 2.52
153 154 2.421424 CTGCCGAAATTCTCCCTCTTTG 59.579 50.000 0.00 0.00 0.00 2.77
154 155 2.224769 TGCCGAAATTCTCCCTCTTTGT 60.225 45.455 0.00 0.00 0.00 2.83
155 156 2.162408 GCCGAAATTCTCCCTCTTTGTG 59.838 50.000 0.00 0.00 0.00 3.33
156 157 3.412386 CCGAAATTCTCCCTCTTTGTGT 58.588 45.455 0.00 0.00 0.00 3.72
157 158 3.189287 CCGAAATTCTCCCTCTTTGTGTG 59.811 47.826 0.00 0.00 0.00 3.82
158 159 3.815401 CGAAATTCTCCCTCTTTGTGTGT 59.185 43.478 0.00 0.00 0.00 3.72
159 160 4.994852 CGAAATTCTCCCTCTTTGTGTGTA 59.005 41.667 0.00 0.00 0.00 2.90
160 161 5.120830 CGAAATTCTCCCTCTTTGTGTGTAG 59.879 44.000 0.00 0.00 0.00 2.74
161 162 3.402628 TTCTCCCTCTTTGTGTGTAGC 57.597 47.619 0.00 0.00 0.00 3.58
162 163 2.609747 TCTCCCTCTTTGTGTGTAGCT 58.390 47.619 0.00 0.00 0.00 3.32
163 164 2.972713 TCTCCCTCTTTGTGTGTAGCTT 59.027 45.455 0.00 0.00 0.00 3.74
164 165 3.070018 CTCCCTCTTTGTGTGTAGCTTG 58.930 50.000 0.00 0.00 0.00 4.01
165 166 1.537202 CCCTCTTTGTGTGTAGCTTGC 59.463 52.381 0.00 0.00 0.00 4.01
166 167 2.221169 CCTCTTTGTGTGTAGCTTGCA 58.779 47.619 0.00 0.00 0.00 4.08
167 168 2.618241 CCTCTTTGTGTGTAGCTTGCAA 59.382 45.455 0.00 0.00 0.00 4.08
168 169 3.066621 CCTCTTTGTGTGTAGCTTGCAAA 59.933 43.478 0.00 0.00 0.00 3.68
169 170 4.261741 CCTCTTTGTGTGTAGCTTGCAAAT 60.262 41.667 0.00 0.00 0.00 2.32
170 171 5.261209 TCTTTGTGTGTAGCTTGCAAATT 57.739 34.783 0.00 0.00 0.00 1.82
171 172 6.384258 TCTTTGTGTGTAGCTTGCAAATTA 57.616 33.333 0.00 0.00 0.00 1.40
172 173 6.980593 TCTTTGTGTGTAGCTTGCAAATTAT 58.019 32.000 0.00 0.00 0.00 1.28
173 174 6.862608 TCTTTGTGTGTAGCTTGCAAATTATG 59.137 34.615 0.00 0.00 0.00 1.90
174 175 5.956068 TGTGTGTAGCTTGCAAATTATGA 57.044 34.783 0.00 0.00 0.00 2.15
175 176 5.941733 TGTGTGTAGCTTGCAAATTATGAG 58.058 37.500 0.00 0.00 0.00 2.90
176 177 5.704978 TGTGTGTAGCTTGCAAATTATGAGA 59.295 36.000 0.00 0.00 0.00 3.27
177 178 6.128200 TGTGTGTAGCTTGCAAATTATGAGAG 60.128 38.462 0.00 0.00 0.00 3.20
178 179 6.092670 GTGTGTAGCTTGCAAATTATGAGAGA 59.907 38.462 0.00 0.00 0.00 3.10
179 180 6.654582 TGTGTAGCTTGCAAATTATGAGAGAA 59.345 34.615 0.00 0.00 0.00 2.87
180 181 7.174772 TGTGTAGCTTGCAAATTATGAGAGAAA 59.825 33.333 0.00 0.00 0.00 2.52
181 182 8.023128 GTGTAGCTTGCAAATTATGAGAGAAAA 58.977 33.333 0.00 0.00 0.00 2.29
182 183 8.239314 TGTAGCTTGCAAATTATGAGAGAAAAG 58.761 33.333 0.00 0.00 0.00 2.27
183 184 6.628185 AGCTTGCAAATTATGAGAGAAAAGG 58.372 36.000 0.00 0.00 0.00 3.11
184 185 5.290400 GCTTGCAAATTATGAGAGAAAAGGC 59.710 40.000 0.00 0.00 0.00 4.35
185 186 5.981088 TGCAAATTATGAGAGAAAAGGCA 57.019 34.783 0.00 0.00 0.00 4.75
186 187 6.534475 TGCAAATTATGAGAGAAAAGGCAT 57.466 33.333 0.00 0.00 0.00 4.40
187 188 6.938507 TGCAAATTATGAGAGAAAAGGCATT 58.061 32.000 0.00 0.00 0.00 3.56
188 189 8.065473 TGCAAATTATGAGAGAAAAGGCATTA 57.935 30.769 0.00 0.00 0.00 1.90
189 190 8.192774 TGCAAATTATGAGAGAAAAGGCATTAG 58.807 33.333 0.00 0.00 0.00 1.73
190 191 8.408601 GCAAATTATGAGAGAAAAGGCATTAGA 58.591 33.333 0.00 0.00 0.00 2.10
197 198 9.692325 ATGAGAGAAAAGGCATTAGAATTACTT 57.308 29.630 0.00 0.00 0.00 2.24
198 199 9.167311 TGAGAGAAAAGGCATTAGAATTACTTC 57.833 33.333 0.00 0.00 0.00 3.01
199 200 9.167311 GAGAGAAAAGGCATTAGAATTACTTCA 57.833 33.333 0.00 0.00 33.56 3.02
200 201 9.520515 AGAGAAAAGGCATTAGAATTACTTCAA 57.479 29.630 0.00 0.00 33.56 2.69
238 239 9.730420 ACGGATAAAAACATCATAAATAACAGC 57.270 29.630 0.00 0.00 0.00 4.40
239 240 9.729023 CGGATAAAAACATCATAAATAACAGCA 57.271 29.630 0.00 0.00 0.00 4.41
244 245 9.995003 AAAAACATCATAAATAACAGCAGGAAA 57.005 25.926 0.00 0.00 0.00 3.13
245 246 9.995003 AAAACATCATAAATAACAGCAGGAAAA 57.005 25.926 0.00 0.00 0.00 2.29
246 247 8.986477 AACATCATAAATAACAGCAGGAAAAC 57.014 30.769 0.00 0.00 0.00 2.43
247 248 8.121305 ACATCATAAATAACAGCAGGAAAACA 57.879 30.769 0.00 0.00 0.00 2.83
248 249 8.752187 ACATCATAAATAACAGCAGGAAAACAT 58.248 29.630 0.00 0.00 0.00 2.71
249 250 9.027129 CATCATAAATAACAGCAGGAAAACATG 57.973 33.333 0.00 0.00 0.00 3.21
250 251 8.347004 TCATAAATAACAGCAGGAAAACATGA 57.653 30.769 0.00 0.00 0.00 3.07
251 252 8.970020 TCATAAATAACAGCAGGAAAACATGAT 58.030 29.630 0.00 0.00 0.00 2.45
252 253 9.027129 CATAAATAACAGCAGGAAAACATGATG 57.973 33.333 0.00 0.00 38.73 3.07
254 255 7.701539 AATAACAGCAGGAAAACATGATGTA 57.298 32.000 0.00 0.00 44.68 2.29
255 256 7.701539 ATAACAGCAGGAAAACATGATGTAA 57.298 32.000 0.00 0.00 44.68 2.41
256 257 6.403866 AACAGCAGGAAAACATGATGTAAA 57.596 33.333 0.00 0.00 44.68 2.01
257 258 6.403866 ACAGCAGGAAAACATGATGTAAAA 57.596 33.333 0.00 0.00 43.70 1.52
258 259 6.996509 ACAGCAGGAAAACATGATGTAAAAT 58.003 32.000 0.00 0.00 43.70 1.82
259 260 6.869913 ACAGCAGGAAAACATGATGTAAAATG 59.130 34.615 0.00 0.00 43.70 2.32
260 261 6.311935 CAGCAGGAAAACATGATGTAAAATGG 59.688 38.462 0.00 0.00 0.00 3.16
261 262 6.211184 AGCAGGAAAACATGATGTAAAATGGA 59.789 34.615 0.00 0.00 0.00 3.41
262 263 6.311200 GCAGGAAAACATGATGTAAAATGGAC 59.689 38.462 0.00 0.00 0.00 4.02
263 264 6.527722 CAGGAAAACATGATGTAAAATGGACG 59.472 38.462 0.00 0.00 0.00 4.79
264 265 6.208599 AGGAAAACATGATGTAAAATGGACGT 59.791 34.615 0.00 0.00 0.00 4.34
265 266 7.392113 AGGAAAACATGATGTAAAATGGACGTA 59.608 33.333 0.00 0.00 0.00 3.57
266 267 8.188139 GGAAAACATGATGTAAAATGGACGTAT 58.812 33.333 0.00 0.00 0.00 3.06
267 268 9.221775 GAAAACATGATGTAAAATGGACGTATC 57.778 33.333 0.00 0.00 0.00 2.24
268 269 7.857734 AACATGATGTAAAATGGACGTATCA 57.142 32.000 0.00 0.00 0.00 2.15
269 270 7.857734 ACATGATGTAAAATGGACGTATCAA 57.142 32.000 0.00 0.00 0.00 2.57
270 271 8.450578 ACATGATGTAAAATGGACGTATCAAT 57.549 30.769 0.00 0.00 0.00 2.57
271 272 8.344831 ACATGATGTAAAATGGACGTATCAATG 58.655 33.333 0.00 0.00 0.00 2.82
272 273 7.258022 TGATGTAAAATGGACGTATCAATGG 57.742 36.000 0.00 0.00 0.00 3.16
273 274 6.826231 TGATGTAAAATGGACGTATCAATGGT 59.174 34.615 0.00 0.00 0.00 3.55
274 275 6.429791 TGTAAAATGGACGTATCAATGGTG 57.570 37.500 0.00 0.00 0.00 4.17
275 276 4.981806 AAAATGGACGTATCAATGGTGG 57.018 40.909 0.00 0.00 0.00 4.61
276 277 1.967319 ATGGACGTATCAATGGTGGC 58.033 50.000 0.00 0.00 0.00 5.01
277 278 0.107410 TGGACGTATCAATGGTGGCC 60.107 55.000 0.00 0.00 0.00 5.36
278 279 0.180406 GGACGTATCAATGGTGGCCT 59.820 55.000 3.32 0.00 0.00 5.19
279 280 1.583054 GACGTATCAATGGTGGCCTC 58.417 55.000 3.32 0.00 0.00 4.70
280 281 0.180406 ACGTATCAATGGTGGCCTCC 59.820 55.000 17.33 17.33 0.00 4.30
281 282 0.535102 CGTATCAATGGTGGCCTCCC 60.535 60.000 21.06 12.97 0.00 4.30
282 283 0.535102 GTATCAATGGTGGCCTCCCG 60.535 60.000 21.06 9.73 0.00 5.14
283 284 2.337879 TATCAATGGTGGCCTCCCGC 62.338 60.000 21.06 0.00 41.02 6.13
284 285 4.738998 CAATGGTGGCCTCCCGCA 62.739 66.667 21.06 2.92 43.62 5.69
285 286 3.743017 AATGGTGGCCTCCCGCAT 61.743 61.111 21.06 5.37 43.62 4.73
286 287 3.721370 AATGGTGGCCTCCCGCATC 62.721 63.158 21.06 0.00 43.62 3.91
288 289 4.864334 GGTGGCCTCCCGCATCTG 62.864 72.222 13.20 0.00 43.62 2.90
289 290 4.101448 GTGGCCTCCCGCATCTGT 62.101 66.667 3.32 0.00 41.40 3.41
290 291 4.100084 TGGCCTCCCGCATCTGTG 62.100 66.667 3.32 0.00 40.31 3.66
291 292 4.101448 GGCCTCCCGCATCTGTGT 62.101 66.667 0.00 0.00 40.31 3.72
292 293 2.512515 GCCTCCCGCATCTGTGTC 60.513 66.667 0.00 0.00 37.47 3.67
293 294 2.187946 CCTCCCGCATCTGTGTCC 59.812 66.667 0.00 0.00 0.00 4.02
294 295 2.187946 CTCCCGCATCTGTGTCCC 59.812 66.667 0.00 0.00 0.00 4.46
295 296 3.723235 CTCCCGCATCTGTGTCCCG 62.723 68.421 0.00 0.00 0.00 5.14
296 297 4.082523 CCCGCATCTGTGTCCCGT 62.083 66.667 0.00 0.00 0.00 5.28
297 298 2.815211 CCGCATCTGTGTCCCGTG 60.815 66.667 0.00 0.00 0.00 4.94
298 299 2.815211 CGCATCTGTGTCCCGTGG 60.815 66.667 0.00 0.00 0.00 4.94
299 300 2.662596 GCATCTGTGTCCCGTGGA 59.337 61.111 0.00 0.00 0.00 4.02
328 329 4.131376 GTCCATGGACGGATGCAG 57.869 61.111 28.52 0.00 37.41 4.41
329 330 1.522092 GTCCATGGACGGATGCAGA 59.478 57.895 28.52 0.00 37.41 4.26
330 331 0.107703 GTCCATGGACGGATGCAGAA 60.108 55.000 28.52 0.00 37.41 3.02
331 332 0.178767 TCCATGGACGGATGCAGAAG 59.821 55.000 11.44 0.00 0.00 2.85
332 333 0.178767 CCATGGACGGATGCAGAAGA 59.821 55.000 5.56 0.00 0.00 2.87
333 334 1.407299 CCATGGACGGATGCAGAAGAA 60.407 52.381 5.56 0.00 0.00 2.52
334 335 2.358957 CATGGACGGATGCAGAAGAAA 58.641 47.619 0.00 0.00 0.00 2.52
335 336 2.559698 TGGACGGATGCAGAAGAAAA 57.440 45.000 0.00 0.00 0.00 2.29
336 337 3.071874 TGGACGGATGCAGAAGAAAAT 57.928 42.857 0.00 0.00 0.00 1.82
337 338 3.420893 TGGACGGATGCAGAAGAAAATT 58.579 40.909 0.00 0.00 0.00 1.82
338 339 3.826157 TGGACGGATGCAGAAGAAAATTT 59.174 39.130 0.00 0.00 0.00 1.82
339 340 4.168760 GGACGGATGCAGAAGAAAATTTG 58.831 43.478 0.00 0.00 0.00 2.32
340 341 4.321230 GGACGGATGCAGAAGAAAATTTGT 60.321 41.667 0.00 0.00 0.00 2.83
341 342 4.549458 ACGGATGCAGAAGAAAATTTGTG 58.451 39.130 0.00 0.00 0.00 3.33
342 343 4.278170 ACGGATGCAGAAGAAAATTTGTGA 59.722 37.500 0.00 0.00 0.00 3.58
343 344 4.855388 CGGATGCAGAAGAAAATTTGTGAG 59.145 41.667 0.00 0.00 0.00 3.51
344 345 5.563475 CGGATGCAGAAGAAAATTTGTGAGT 60.563 40.000 0.00 0.00 0.00 3.41
345 346 6.218746 GGATGCAGAAGAAAATTTGTGAGTT 58.781 36.000 0.00 0.00 0.00 3.01
346 347 6.145048 GGATGCAGAAGAAAATTTGTGAGTTG 59.855 38.462 0.00 0.00 0.00 3.16
347 348 5.964758 TGCAGAAGAAAATTTGTGAGTTGT 58.035 33.333 0.00 0.00 0.00 3.32
348 349 6.035843 TGCAGAAGAAAATTTGTGAGTTGTC 58.964 36.000 0.00 0.00 0.00 3.18
349 350 5.172053 GCAGAAGAAAATTTGTGAGTTGTCG 59.828 40.000 0.00 0.00 0.00 4.35
350 351 6.258160 CAGAAGAAAATTTGTGAGTTGTCGT 58.742 36.000 0.00 0.00 0.00 4.34
351 352 6.747280 CAGAAGAAAATTTGTGAGTTGTCGTT 59.253 34.615 0.00 0.00 0.00 3.85
352 353 6.747280 AGAAGAAAATTTGTGAGTTGTCGTTG 59.253 34.615 0.00 0.00 0.00 4.10
353 354 6.189677 AGAAAATTTGTGAGTTGTCGTTGA 57.810 33.333 0.00 0.00 0.00 3.18
354 355 6.616947 AGAAAATTTGTGAGTTGTCGTTGAA 58.383 32.000 0.00 0.00 0.00 2.69
355 356 6.747280 AGAAAATTTGTGAGTTGTCGTTGAAG 59.253 34.615 0.00 0.00 0.00 3.02
356 357 5.811399 AATTTGTGAGTTGTCGTTGAAGA 57.189 34.783 0.00 0.00 0.00 2.87
357 358 6.377327 AATTTGTGAGTTGTCGTTGAAGAT 57.623 33.333 0.00 0.00 0.00 2.40
358 359 4.794248 TTGTGAGTTGTCGTTGAAGATG 57.206 40.909 0.00 0.00 0.00 2.90
359 360 2.543848 TGTGAGTTGTCGTTGAAGATGC 59.456 45.455 0.00 0.00 0.00 3.91
360 361 2.096218 GTGAGTTGTCGTTGAAGATGCC 60.096 50.000 0.00 0.00 0.00 4.40
361 362 1.464997 GAGTTGTCGTTGAAGATGCCC 59.535 52.381 0.00 0.00 0.00 5.36
362 363 1.072331 AGTTGTCGTTGAAGATGCCCT 59.928 47.619 0.00 0.00 0.00 5.19
363 364 1.464997 GTTGTCGTTGAAGATGCCCTC 59.535 52.381 0.00 0.00 0.00 4.30
364 365 0.684535 TGTCGTTGAAGATGCCCTCA 59.315 50.000 0.00 0.00 0.00 3.86
365 366 1.079503 GTCGTTGAAGATGCCCTCAC 58.920 55.000 0.00 0.00 0.00 3.51
366 367 0.389817 TCGTTGAAGATGCCCTCACG 60.390 55.000 0.00 0.00 0.00 4.35
367 368 0.670546 CGTTGAAGATGCCCTCACGT 60.671 55.000 0.00 0.00 0.00 4.49
368 369 1.403647 CGTTGAAGATGCCCTCACGTA 60.404 52.381 0.00 0.00 0.00 3.57
369 370 2.271800 GTTGAAGATGCCCTCACGTAG 58.728 52.381 0.00 0.00 0.00 3.51
370 371 1.847328 TGAAGATGCCCTCACGTAGA 58.153 50.000 0.00 0.00 0.00 2.59
371 372 2.176045 TGAAGATGCCCTCACGTAGAA 58.824 47.619 0.00 0.00 0.00 2.10
372 373 2.565391 TGAAGATGCCCTCACGTAGAAA 59.435 45.455 0.00 0.00 0.00 2.52
373 374 3.007506 TGAAGATGCCCTCACGTAGAAAA 59.992 43.478 0.00 0.00 0.00 2.29
374 375 3.914426 AGATGCCCTCACGTAGAAAAT 57.086 42.857 0.00 0.00 0.00 1.82
375 376 3.798202 AGATGCCCTCACGTAGAAAATC 58.202 45.455 0.00 0.00 0.00 2.17
376 377 3.452627 AGATGCCCTCACGTAGAAAATCT 59.547 43.478 0.00 0.00 0.00 2.40
377 378 4.649674 AGATGCCCTCACGTAGAAAATCTA 59.350 41.667 0.00 0.00 0.00 1.98
378 379 4.119442 TGCCCTCACGTAGAAAATCTAC 57.881 45.455 7.34 7.34 44.41 2.59
379 380 3.767673 TGCCCTCACGTAGAAAATCTACT 59.232 43.478 13.84 1.37 45.38 2.57
380 381 4.222145 TGCCCTCACGTAGAAAATCTACTT 59.778 41.667 13.84 3.83 45.38 2.24
381 382 5.176592 GCCCTCACGTAGAAAATCTACTTT 58.823 41.667 13.84 0.80 45.38 2.66
382 383 5.642491 GCCCTCACGTAGAAAATCTACTTTT 59.358 40.000 13.84 0.00 45.38 2.27
392 393 5.684550 AAAATCTACTTTTCCGCTTTCGT 57.315 34.783 0.00 0.00 31.23 3.85
393 394 5.684550 AAATCTACTTTTCCGCTTTCGTT 57.315 34.783 0.00 0.00 0.00 3.85
394 395 4.923264 ATCTACTTTTCCGCTTTCGTTC 57.077 40.909 0.00 0.00 0.00 3.95
395 396 3.062042 TCTACTTTTCCGCTTTCGTTCC 58.938 45.455 0.00 0.00 0.00 3.62
396 397 0.949397 ACTTTTCCGCTTTCGTTCCC 59.051 50.000 0.00 0.00 0.00 3.97
397 398 0.240145 CTTTTCCGCTTTCGTTCCCC 59.760 55.000 0.00 0.00 0.00 4.81
398 399 0.465824 TTTTCCGCTTTCGTTCCCCA 60.466 50.000 0.00 0.00 0.00 4.96
399 400 1.167781 TTTCCGCTTTCGTTCCCCAC 61.168 55.000 0.00 0.00 0.00 4.61
400 401 3.053896 CCGCTTTCGTTCCCCACC 61.054 66.667 0.00 0.00 0.00 4.61
401 402 3.053896 CGCTTTCGTTCCCCACCC 61.054 66.667 0.00 0.00 0.00 4.61
402 403 2.675423 GCTTTCGTTCCCCACCCC 60.675 66.667 0.00 0.00 0.00 4.95
403 404 2.035155 CTTTCGTTCCCCACCCCC 59.965 66.667 0.00 0.00 0.00 5.40
404 405 3.912745 CTTTCGTTCCCCACCCCCG 62.913 68.421 0.00 0.00 0.00 5.73
405 406 4.958158 TTCGTTCCCCACCCCCGA 62.958 66.667 0.00 0.00 0.00 5.14
408 409 4.340246 GTTCCCCACCCCCGACAC 62.340 72.222 0.00 0.00 0.00 3.67
427 428 3.228017 GGCCTCCCGTCTCCTAGC 61.228 72.222 0.00 0.00 0.00 3.42
428 429 2.442272 GCCTCCCGTCTCCTAGCA 60.442 66.667 0.00 0.00 0.00 3.49
429 430 2.058595 GCCTCCCGTCTCCTAGCAA 61.059 63.158 0.00 0.00 0.00 3.91
430 431 1.817209 CCTCCCGTCTCCTAGCAAC 59.183 63.158 0.00 0.00 0.00 4.17
431 432 1.677637 CCTCCCGTCTCCTAGCAACC 61.678 65.000 0.00 0.00 0.00 3.77
432 433 0.970937 CTCCCGTCTCCTAGCAACCA 60.971 60.000 0.00 0.00 0.00 3.67
433 434 1.218316 CCCGTCTCCTAGCAACCAC 59.782 63.158 0.00 0.00 0.00 4.16
434 435 1.541310 CCCGTCTCCTAGCAACCACA 61.541 60.000 0.00 0.00 0.00 4.17
435 436 0.108615 CCGTCTCCTAGCAACCACAG 60.109 60.000 0.00 0.00 0.00 3.66
436 437 0.108615 CGTCTCCTAGCAACCACAGG 60.109 60.000 0.00 0.00 0.00 4.00
437 438 0.391793 GTCTCCTAGCAACCACAGGC 60.392 60.000 0.00 0.00 0.00 4.85
438 439 0.835971 TCTCCTAGCAACCACAGGCA 60.836 55.000 0.00 0.00 0.00 4.75
439 440 0.036732 CTCCTAGCAACCACAGGCAA 59.963 55.000 0.00 0.00 0.00 4.52
440 441 0.250727 TCCTAGCAACCACAGGCAAC 60.251 55.000 0.00 0.00 0.00 4.17
441 442 0.537143 CCTAGCAACCACAGGCAACA 60.537 55.000 0.00 0.00 41.41 3.33
442 443 0.593128 CTAGCAACCACAGGCAACAC 59.407 55.000 0.00 0.00 41.41 3.32
443 444 0.106967 TAGCAACCACAGGCAACACA 60.107 50.000 0.00 0.00 41.41 3.72
444 445 0.969917 AGCAACCACAGGCAACACAA 60.970 50.000 0.00 0.00 41.41 3.33
445 446 0.805711 GCAACCACAGGCAACACAAC 60.806 55.000 0.00 0.00 41.41 3.32
446 447 0.179113 CAACCACAGGCAACACAACC 60.179 55.000 0.00 0.00 41.41 3.77
447 448 0.613292 AACCACAGGCAACACAACCA 60.613 50.000 0.00 0.00 41.41 3.67
448 449 1.319614 ACCACAGGCAACACAACCAC 61.320 55.000 0.00 0.00 41.41 4.16
449 450 1.437160 CACAGGCAACACAACCACC 59.563 57.895 0.00 0.00 41.41 4.61
450 451 1.000270 ACAGGCAACACAACCACCA 60.000 52.632 0.00 0.00 41.41 4.17
451 452 1.037030 ACAGGCAACACAACCACCAG 61.037 55.000 0.00 0.00 41.41 4.00
452 453 1.037030 CAGGCAACACAACCACCAGT 61.037 55.000 0.00 0.00 41.41 4.00
453 454 0.324275 AGGCAACACAACCACCAGTT 60.324 50.000 0.00 0.00 38.22 3.16
454 455 0.102300 GGCAACACAACCACCAGTTC 59.898 55.000 0.00 0.00 36.18 3.01
455 456 0.814457 GCAACACAACCACCAGTTCA 59.186 50.000 0.00 0.00 36.18 3.18
456 457 1.469079 GCAACACAACCACCAGTTCAC 60.469 52.381 0.00 0.00 36.18 3.18
457 458 1.134175 CAACACAACCACCAGTTCACC 59.866 52.381 0.00 0.00 36.18 4.02
458 459 0.329931 ACACAACCACCAGTTCACCA 59.670 50.000 0.00 0.00 36.18 4.17
459 460 0.738389 CACAACCACCAGTTCACCAC 59.262 55.000 0.00 0.00 36.18 4.16
460 461 0.746563 ACAACCACCAGTTCACCACG 60.747 55.000 0.00 0.00 36.18 4.94
461 462 0.746563 CAACCACCAGTTCACCACGT 60.747 55.000 0.00 0.00 36.18 4.49
462 463 0.746563 AACCACCAGTTCACCACGTG 60.747 55.000 9.08 9.08 30.99 4.49
463 464 1.145156 CCACCAGTTCACCACGTGA 59.855 57.895 19.30 0.00 41.09 4.35
464 465 1.157870 CCACCAGTTCACCACGTGAC 61.158 60.000 19.30 7.10 42.60 3.67
465 466 1.145377 ACCAGTTCACCACGTGACC 59.855 57.895 19.30 0.00 42.60 4.02
466 467 1.145156 CCAGTTCACCACGTGACCA 59.855 57.895 19.30 0.00 42.60 4.02
467 468 1.157870 CCAGTTCACCACGTGACCAC 61.158 60.000 19.30 8.03 42.60 4.16
468 469 1.145377 AGTTCACCACGTGACCACC 59.855 57.895 19.30 1.56 42.60 4.61
469 470 1.153329 GTTCACCACGTGACCACCA 60.153 57.895 19.30 0.00 42.60 4.17
470 471 1.153329 TTCACCACGTGACCACCAC 60.153 57.895 19.30 0.00 42.60 4.16
471 472 1.900545 TTCACCACGTGACCACCACA 61.901 55.000 19.30 0.00 45.98 4.17
472 473 1.227823 CACCACGTGACCACCACAT 60.228 57.895 19.30 0.00 45.98 3.21
473 474 1.070786 ACCACGTGACCACCACATC 59.929 57.895 19.30 0.00 45.98 3.06
474 475 1.671054 CCACGTGACCACCACATCC 60.671 63.158 19.30 0.00 45.98 3.51
475 476 1.070615 CACGTGACCACCACATCCA 59.929 57.895 10.90 0.00 45.98 3.41
476 477 0.321564 CACGTGACCACCACATCCAT 60.322 55.000 10.90 0.00 45.98 3.41
477 478 0.321564 ACGTGACCACCACATCCATG 60.322 55.000 0.00 0.00 45.98 3.66
478 479 0.321564 CGTGACCACCACATCCATGT 60.322 55.000 0.00 0.00 45.98 3.21
479 480 1.453155 GTGACCACCACATCCATGTC 58.547 55.000 0.00 0.00 45.03 3.06
480 481 0.036483 TGACCACCACATCCATGTCG 60.036 55.000 0.00 0.00 39.39 4.35
481 482 1.369091 GACCACCACATCCATGTCGC 61.369 60.000 0.00 0.00 39.39 5.19
482 483 2.114670 CCACCACATCCATGTCGCC 61.115 63.158 0.00 0.00 39.39 5.54
483 484 2.114670 CACCACATCCATGTCGCCC 61.115 63.158 0.00 0.00 39.39 6.13
484 485 2.271821 CCACATCCATGTCGCCCA 59.728 61.111 0.00 0.00 39.39 5.36
485 486 2.114670 CCACATCCATGTCGCCCAC 61.115 63.158 0.00 0.00 39.39 4.61
486 487 1.078214 CACATCCATGTCGCCCACT 60.078 57.895 0.00 0.00 39.39 4.00
487 488 0.177836 CACATCCATGTCGCCCACTA 59.822 55.000 0.00 0.00 39.39 2.74
488 489 0.465705 ACATCCATGTCGCCCACTAG 59.534 55.000 0.00 0.00 35.87 2.57
489 490 0.882042 CATCCATGTCGCCCACTAGC 60.882 60.000 0.00 0.00 0.00 3.42
490 491 1.337384 ATCCATGTCGCCCACTAGCA 61.337 55.000 0.00 0.00 0.00 3.49
491 492 1.522355 CCATGTCGCCCACTAGCAG 60.522 63.158 0.00 0.00 0.00 4.24
492 493 1.219124 CATGTCGCCCACTAGCAGT 59.781 57.895 0.00 0.00 0.00 4.40
493 494 0.807667 CATGTCGCCCACTAGCAGTC 60.808 60.000 0.00 0.00 0.00 3.51
494 495 2.202623 GTCGCCCACTAGCAGTCG 60.203 66.667 0.00 0.00 0.00 4.18
495 496 2.675423 TCGCCCACTAGCAGTCGT 60.675 61.111 0.00 0.00 0.00 4.34
496 497 2.202623 CGCCCACTAGCAGTCGTC 60.203 66.667 0.00 0.00 0.00 4.20
497 498 2.202623 GCCCACTAGCAGTCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
498 499 2.202623 CCCACTAGCAGTCGTCGC 60.203 66.667 0.00 0.00 0.00 5.19
499 500 2.701780 CCCACTAGCAGTCGTCGCT 61.702 63.158 0.00 0.00 43.62 4.93
500 501 1.226435 CCACTAGCAGTCGTCGCTC 60.226 63.158 2.90 0.00 40.96 5.03
501 502 1.581402 CACTAGCAGTCGTCGCTCG 60.581 63.158 2.90 0.94 40.96 5.03
502 503 2.649349 CTAGCAGTCGTCGCTCGC 60.649 66.667 2.90 0.00 40.96 5.03
503 504 3.102107 CTAGCAGTCGTCGCTCGCT 62.102 63.158 7.18 7.18 40.96 4.93
504 505 3.382591 TAGCAGTCGTCGCTCGCTG 62.383 63.158 10.99 14.21 40.96 5.18
511 512 4.077188 GTCGCTCGCTGCCACAAC 62.077 66.667 0.00 0.00 38.78 3.32
534 535 1.565156 CTGCAACGCAAAGCCGACTA 61.565 55.000 0.00 0.00 38.41 2.59
543 544 0.171455 AAAGCCGACTACTCTCGCAG 59.829 55.000 0.00 0.00 31.98 5.18
575 576 0.613853 AACCGCTCTACCTAGCCACA 60.614 55.000 0.00 0.00 39.43 4.17
581 582 3.774959 CTACCTAGCCACAGCGCCG 62.775 68.421 2.29 0.00 46.67 6.46
596 597 2.978010 CCGCCCACAACCAGACAC 60.978 66.667 0.00 0.00 0.00 3.67
599 600 2.508928 CCCACAACCAGACACCGT 59.491 61.111 0.00 0.00 0.00 4.83
601 602 1.145156 CCACAACCAGACACCGTCA 59.855 57.895 0.00 0.00 34.60 4.35
604 605 0.756294 ACAACCAGACACCGTCATCA 59.244 50.000 0.00 0.00 34.60 3.07
609 611 1.906824 AGACACCGTCATCACCCGT 60.907 57.895 0.00 0.00 34.60 5.28
616 618 0.528924 CGTCATCACCCGTAACCAGA 59.471 55.000 0.00 0.00 0.00 3.86
617 619 1.734707 CGTCATCACCCGTAACCAGAC 60.735 57.143 0.00 0.00 0.00 3.51
619 621 0.245539 CATCACCCGTAACCAGACGT 59.754 55.000 0.00 0.00 41.31 4.34
621 623 1.443194 CACCCGTAACCAGACGTCG 60.443 63.158 10.46 5.16 41.31 5.12
636 638 2.895865 TCGCTCGCCTCGTCCTAG 60.896 66.667 0.00 0.00 0.00 3.02
652 654 0.890542 CTAGGCTTGCTTGCACCACA 60.891 55.000 0.00 0.00 34.04 4.17
653 655 0.467106 TAGGCTTGCTTGCACCACAA 60.467 50.000 0.00 0.00 36.62 3.33
667 669 0.036010 CCACAAGGACGAGCTCCAAT 60.036 55.000 8.47 0.00 42.46 3.16
669 671 0.976641 ACAAGGACGAGCTCCAATGA 59.023 50.000 8.47 0.00 42.46 2.57
675 677 0.109086 ACGAGCTCCAATGACGACAG 60.109 55.000 8.47 0.00 0.00 3.51
679 681 0.723981 GCTCCAATGACGACAGAAGC 59.276 55.000 0.00 0.00 0.00 3.86
692 694 3.530535 GACAGAAGCCTTCATCTTCTCC 58.469 50.000 7.29 0.00 46.01 3.71
714 716 3.103911 CGACGCCACAACCGACTC 61.104 66.667 0.00 0.00 0.00 3.36
715 717 2.028484 GACGCCACAACCGACTCA 59.972 61.111 0.00 0.00 0.00 3.41
718 720 1.667830 CGCCACAACCGACTCATGT 60.668 57.895 0.00 0.00 0.00 3.21
719 721 1.626654 CGCCACAACCGACTCATGTC 61.627 60.000 0.00 0.00 39.70 3.06
720 722 1.298859 GCCACAACCGACTCATGTCC 61.299 60.000 0.00 0.00 39.94 4.02
725 727 1.276421 CAACCGACTCATGTCCTCCTT 59.724 52.381 0.00 0.00 39.94 3.36
737 739 2.024273 TGTCCTCCTTCTCCTTCGGTAT 60.024 50.000 0.00 0.00 0.00 2.73
740 742 4.081031 GTCCTCCTTCTCCTTCGGTATTTT 60.081 45.833 0.00 0.00 0.00 1.82
741 743 4.081087 TCCTCCTTCTCCTTCGGTATTTTG 60.081 45.833 0.00 0.00 0.00 2.44
743 745 5.396884 CCTCCTTCTCCTTCGGTATTTTGAT 60.397 44.000 0.00 0.00 0.00 2.57
747 749 4.766375 TCTCCTTCGGTATTTTGATGTCC 58.234 43.478 0.00 0.00 0.00 4.02
748 750 3.527533 TCCTTCGGTATTTTGATGTCCG 58.472 45.455 0.00 0.00 42.12 4.79
771 773 3.362888 GCGTCAATTTTTGTTCACCATGC 60.363 43.478 0.00 0.00 0.00 4.06
777 779 6.645827 TCAATTTTTGTTCACCATGCTGTATG 59.354 34.615 0.00 0.00 36.50 2.39
796 799 2.333926 TGTCAGCAATTCGGAACTACG 58.666 47.619 0.00 0.00 0.00 3.51
803 806 0.459063 ATTCGGAACTACGCGAACCC 60.459 55.000 15.93 5.38 35.40 4.11
804 807 1.804396 TTCGGAACTACGCGAACCCA 61.804 55.000 15.93 0.00 0.00 4.51
810 813 1.223417 ACTACGCGAACCCAAAACCG 61.223 55.000 15.93 0.00 0.00 4.44
814 817 0.525882 CGCGAACCCAAAACCGTTTT 60.526 50.000 0.00 3.29 0.00 2.43
816 819 1.468895 CGAACCCAAAACCGTTTTCG 58.531 50.000 6.26 3.75 43.67 3.46
882 885 9.300681 TCAGATGTTAATTTTGGAAACTCTGAT 57.699 29.630 11.79 0.00 35.25 2.90
944 949 3.335356 AATGCCCAGGCTCACGGAG 62.335 63.158 10.58 0.00 42.51 4.63
972 994 2.777692 CACCCACTCCCCAGTATATGTT 59.222 50.000 0.00 0.00 0.00 2.71
1212 1234 3.834056 CCCTCGGCCTCCTCCCTA 61.834 72.222 0.00 0.00 0.00 3.53
1215 1237 1.608046 CTCGGCCTCCTCCCTATCC 60.608 68.421 0.00 0.00 0.00 2.59
1406 1428 3.160047 AGATCTGCCGCTGGAGGG 61.160 66.667 0.00 0.00 0.00 4.30
1467 1489 4.410400 GCCTCCGGACCCTTGGTG 62.410 72.222 0.00 0.00 35.25 4.17
1770 1792 1.128200 CCCATCGGTACCATGAGGAA 58.872 55.000 19.79 0.00 38.69 3.36
1853 1875 2.094390 CCGACAATCCCAAGTACGAGAA 60.094 50.000 0.00 0.00 0.00 2.87
1868 1890 0.687354 GAGAACTGGAAGGCTGGACA 59.313 55.000 0.00 0.00 39.30 4.02
1889 1911 1.735376 GCCATGGCTGCCTGAATGAG 61.735 60.000 29.98 10.12 38.26 2.90
1898 1920 1.503542 CCTGAATGAGTTGTGCGGC 59.496 57.895 0.00 0.00 0.00 6.53
1914 1936 1.743394 GCGGCAATGGTAAGCTTTACT 59.257 47.619 3.20 0.00 0.00 2.24
1917 1939 3.621558 GGCAATGGTAAGCTTTACTCCT 58.378 45.455 3.20 0.00 0.00 3.69
1918 1940 4.682320 CGGCAATGGTAAGCTTTACTCCTA 60.682 45.833 3.20 0.00 0.00 2.94
1956 1978 6.074648 AGAGTTGTATGATTTGGTTTGGGAA 58.925 36.000 0.00 0.00 0.00 3.97
1958 1980 6.935167 AGTTGTATGATTTGGTTTGGGAATC 58.065 36.000 0.00 0.00 0.00 2.52
2005 2027 4.827284 ACCCAGTTGTATGAAGGAAAACAG 59.173 41.667 0.00 0.00 0.00 3.16
2010 2032 6.148480 CAGTTGTATGAAGGAAAACAGAGAGG 59.852 42.308 0.00 0.00 0.00 3.69
2102 2124 8.239314 CGATGCTGCAAGGATTATACATATTTT 58.761 33.333 6.36 0.00 45.52 1.82
2186 2210 8.633075 AAATTTTGTAGATGCATATTTGGACG 57.367 30.769 0.00 0.00 0.00 4.79
2187 2211 6.993786 TTTTGTAGATGCATATTTGGACGA 57.006 33.333 0.00 0.00 0.00 4.20
2188 2212 6.603237 TTTGTAGATGCATATTTGGACGAG 57.397 37.500 0.00 0.00 0.00 4.18
2409 2441 4.991687 GGGTTATATTGAGAGGCGAGAAAG 59.008 45.833 0.00 0.00 0.00 2.62
2524 2558 4.439253 AGTTACTTTGTTGGGCTCTCTT 57.561 40.909 0.00 0.00 0.00 2.85
2526 2560 4.134563 GTTACTTTGTTGGGCTCTCTTCA 58.865 43.478 0.00 0.00 0.00 3.02
2614 2651 7.582667 ACAACCAACAGCTAGTAGAAATTTT 57.417 32.000 0.00 0.00 0.00 1.82
2634 2671 5.766150 TTTTGTGTCTAATGACCCAACAG 57.234 39.130 0.00 0.00 39.56 3.16
2778 2815 0.322997 TTATGCCCAAAGGTGTCCCG 60.323 55.000 0.00 0.00 35.12 5.14
2904 3195 4.605640 ACCATCCAAACAATGACCAAAG 57.394 40.909 0.00 0.00 0.00 2.77
2944 3235 2.225242 TGGCCACAATCCAAACATACCT 60.225 45.455 0.00 0.00 0.00 3.08
3028 3319 4.670621 CAGTTCGACTAACAAAACATGTGC 59.329 41.667 0.00 0.00 42.99 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.638363 CAATAAGTACTAGAGGGGGCCC 59.362 54.545 15.76 15.76 0.00 5.80
1 2 2.638363 CCAATAAGTACTAGAGGGGGCC 59.362 54.545 0.00 0.00 0.00 5.80
2 3 2.038689 GCCAATAAGTACTAGAGGGGGC 59.961 54.545 0.00 1.56 0.00 5.80
3 4 3.579151 GAGCCAATAAGTACTAGAGGGGG 59.421 52.174 0.00 0.00 0.00 5.40
4 5 3.579151 GGAGCCAATAAGTACTAGAGGGG 59.421 52.174 0.00 0.00 0.00 4.79
5 6 4.223953 TGGAGCCAATAAGTACTAGAGGG 58.776 47.826 0.00 0.00 0.00 4.30
6 7 5.871396 TTGGAGCCAATAAGTACTAGAGG 57.129 43.478 0.00 0.00 0.00 3.69
17 18 9.827198 AATATTTGAGGAATATTGGAGCCAATA 57.173 29.630 20.75 20.75 45.04 1.90
18 19 8.731591 AATATTTGAGGAATATTGGAGCCAAT 57.268 30.769 17.95 17.95 45.04 3.16
19 20 8.551682 AAATATTTGAGGAATATTGGAGCCAA 57.448 30.769 4.15 4.15 45.68 4.52
20 21 7.784073 TGAAATATTTGAGGAATATTGGAGCCA 59.216 33.333 5.17 0.00 45.68 4.75
21 22 8.181904 TGAAATATTTGAGGAATATTGGAGCC 57.818 34.615 5.17 0.00 45.68 4.70
49 50 4.580580 AGCTGAAACTTCACGGAGATTTTT 59.419 37.500 0.00 0.00 32.90 1.94
50 51 4.137543 AGCTGAAACTTCACGGAGATTTT 58.862 39.130 0.00 0.00 32.90 1.82
51 52 3.744660 AGCTGAAACTTCACGGAGATTT 58.255 40.909 0.00 0.00 32.90 2.17
52 53 3.409026 AGCTGAAACTTCACGGAGATT 57.591 42.857 0.00 0.00 32.90 2.40
53 54 3.070018 CAAGCTGAAACTTCACGGAGAT 58.930 45.455 0.00 0.00 32.90 2.75
54 55 2.158957 ACAAGCTGAAACTTCACGGAGA 60.159 45.455 0.00 0.00 32.90 3.71
55 56 2.213499 ACAAGCTGAAACTTCACGGAG 58.787 47.619 0.00 0.00 32.90 4.63
56 57 2.325583 ACAAGCTGAAACTTCACGGA 57.674 45.000 0.00 0.00 32.90 4.69
57 58 3.108144 CAAACAAGCTGAAACTTCACGG 58.892 45.455 0.00 0.00 32.90 4.94
58 59 3.108144 CCAAACAAGCTGAAACTTCACG 58.892 45.455 0.00 0.00 32.90 4.35
59 60 4.142381 ACTCCAAACAAGCTGAAACTTCAC 60.142 41.667 0.00 0.00 32.90 3.18
60 61 4.016444 ACTCCAAACAAGCTGAAACTTCA 58.984 39.130 0.00 0.00 35.57 3.02
61 62 4.639135 ACTCCAAACAAGCTGAAACTTC 57.361 40.909 0.00 0.00 0.00 3.01
62 63 4.220602 ACAACTCCAAACAAGCTGAAACTT 59.779 37.500 0.00 0.00 0.00 2.66
63 64 3.763897 ACAACTCCAAACAAGCTGAAACT 59.236 39.130 0.00 0.00 0.00 2.66
64 65 3.859386 CACAACTCCAAACAAGCTGAAAC 59.141 43.478 0.00 0.00 0.00 2.78
65 66 3.675775 GCACAACTCCAAACAAGCTGAAA 60.676 43.478 0.00 0.00 0.00 2.69
66 67 2.159254 GCACAACTCCAAACAAGCTGAA 60.159 45.455 0.00 0.00 0.00 3.02
67 68 1.405105 GCACAACTCCAAACAAGCTGA 59.595 47.619 0.00 0.00 0.00 4.26
68 69 1.134753 TGCACAACTCCAAACAAGCTG 59.865 47.619 0.00 0.00 0.00 4.24
69 70 1.406539 CTGCACAACTCCAAACAAGCT 59.593 47.619 0.00 0.00 0.00 3.74
70 71 1.405105 TCTGCACAACTCCAAACAAGC 59.595 47.619 0.00 0.00 0.00 4.01
71 72 3.781079 TTCTGCACAACTCCAAACAAG 57.219 42.857 0.00 0.00 0.00 3.16
72 73 5.129634 TCTATTCTGCACAACTCCAAACAA 58.870 37.500 0.00 0.00 0.00 2.83
73 74 4.713553 TCTATTCTGCACAACTCCAAACA 58.286 39.130 0.00 0.00 0.00 2.83
74 75 5.886960 ATCTATTCTGCACAACTCCAAAC 57.113 39.130 0.00 0.00 0.00 2.93
75 76 5.586243 GCTATCTATTCTGCACAACTCCAAA 59.414 40.000 0.00 0.00 0.00 3.28
76 77 5.118990 GCTATCTATTCTGCACAACTCCAA 58.881 41.667 0.00 0.00 0.00 3.53
77 78 4.443457 GGCTATCTATTCTGCACAACTCCA 60.443 45.833 0.00 0.00 0.00 3.86
78 79 4.061596 GGCTATCTATTCTGCACAACTCC 58.938 47.826 0.00 0.00 0.00 3.85
79 80 4.749099 CAGGCTATCTATTCTGCACAACTC 59.251 45.833 0.00 0.00 0.00 3.01
80 81 4.406972 TCAGGCTATCTATTCTGCACAACT 59.593 41.667 0.00 0.00 0.00 3.16
81 82 4.509600 GTCAGGCTATCTATTCTGCACAAC 59.490 45.833 0.00 0.00 0.00 3.32
82 83 4.697514 GTCAGGCTATCTATTCTGCACAA 58.302 43.478 0.00 0.00 0.00 3.33
83 84 3.243535 CGTCAGGCTATCTATTCTGCACA 60.244 47.826 0.00 0.00 0.00 4.57
84 85 3.243569 ACGTCAGGCTATCTATTCTGCAC 60.244 47.826 0.00 0.00 0.00 4.57
85 86 2.959030 ACGTCAGGCTATCTATTCTGCA 59.041 45.455 0.00 0.00 0.00 4.41
86 87 3.651803 ACGTCAGGCTATCTATTCTGC 57.348 47.619 0.00 0.00 0.00 4.26
87 88 4.457603 AGCTACGTCAGGCTATCTATTCTG 59.542 45.833 8.50 0.00 37.00 3.02
88 89 4.658063 AGCTACGTCAGGCTATCTATTCT 58.342 43.478 8.50 0.00 37.00 2.40
89 90 5.379732 AAGCTACGTCAGGCTATCTATTC 57.620 43.478 10.25 0.00 37.87 1.75
90 91 5.793030 AAAGCTACGTCAGGCTATCTATT 57.207 39.130 10.25 0.31 37.87 1.73
91 92 5.279056 GGAAAAGCTACGTCAGGCTATCTAT 60.279 44.000 10.25 0.00 37.87 1.98
92 93 4.037684 GGAAAAGCTACGTCAGGCTATCTA 59.962 45.833 10.25 0.00 37.87 1.98
93 94 3.181474 GGAAAAGCTACGTCAGGCTATCT 60.181 47.826 10.25 0.46 37.87 1.98
94 95 3.124560 GGAAAAGCTACGTCAGGCTATC 58.875 50.000 10.25 11.06 37.87 2.08
95 96 2.500098 TGGAAAAGCTACGTCAGGCTAT 59.500 45.455 10.25 4.24 37.87 2.97
96 97 1.897133 TGGAAAAGCTACGTCAGGCTA 59.103 47.619 10.25 0.00 37.87 3.93
97 98 0.685097 TGGAAAAGCTACGTCAGGCT 59.315 50.000 0.00 0.00 40.85 4.58
98 99 1.079503 CTGGAAAAGCTACGTCAGGC 58.920 55.000 0.00 0.00 0.00 4.85
99 100 2.743636 TCTGGAAAAGCTACGTCAGG 57.256 50.000 0.00 0.00 0.00 3.86
100 101 3.190874 GGATCTGGAAAAGCTACGTCAG 58.809 50.000 0.00 0.00 0.00 3.51
101 102 2.565391 TGGATCTGGAAAAGCTACGTCA 59.435 45.455 0.00 0.00 0.00 4.35
102 103 3.119101 TCTGGATCTGGAAAAGCTACGTC 60.119 47.826 0.00 0.00 0.00 4.34
103 104 2.832129 TCTGGATCTGGAAAAGCTACGT 59.168 45.455 0.00 0.00 0.00 3.57
104 105 3.526931 TCTGGATCTGGAAAAGCTACG 57.473 47.619 0.00 0.00 0.00 3.51
105 106 5.298026 GGAAATCTGGATCTGGAAAAGCTAC 59.702 44.000 0.00 0.00 0.00 3.58
106 107 5.440610 GGAAATCTGGATCTGGAAAAGCTA 58.559 41.667 0.00 0.00 0.00 3.32
107 108 4.276642 GGAAATCTGGATCTGGAAAAGCT 58.723 43.478 0.00 0.00 0.00 3.74
108 109 3.065925 CGGAAATCTGGATCTGGAAAAGC 59.934 47.826 0.00 0.00 0.00 3.51
109 110 3.629398 CCGGAAATCTGGATCTGGAAAAG 59.371 47.826 0.00 0.00 45.36 2.27
110 111 3.620488 CCGGAAATCTGGATCTGGAAAA 58.380 45.455 0.00 0.00 45.36 2.29
111 112 2.683742 GCCGGAAATCTGGATCTGGAAA 60.684 50.000 5.05 0.00 45.36 3.13
112 113 1.134098 GCCGGAAATCTGGATCTGGAA 60.134 52.381 5.05 0.00 45.36 3.53
113 114 0.469917 GCCGGAAATCTGGATCTGGA 59.530 55.000 5.05 0.00 45.36 3.86
114 115 0.471617 AGCCGGAAATCTGGATCTGG 59.528 55.000 5.05 0.00 45.36 3.86
115 116 1.590932 CAGCCGGAAATCTGGATCTG 58.409 55.000 5.05 6.94 45.36 2.90
116 117 0.179034 GCAGCCGGAAATCTGGATCT 60.179 55.000 5.05 0.00 45.36 2.75
117 118 1.169034 GGCAGCCGGAAATCTGGATC 61.169 60.000 5.05 0.70 45.36 3.36
118 119 1.152881 GGCAGCCGGAAATCTGGAT 60.153 57.895 5.05 2.42 45.36 3.41
119 120 2.272146 GGCAGCCGGAAATCTGGA 59.728 61.111 5.05 0.00 45.36 3.86
120 121 3.204827 CGGCAGCCGGAAATCTGG 61.205 66.667 27.32 3.79 44.15 3.86
121 122 1.305219 TTTCGGCAGCCGGAAATCTG 61.305 55.000 33.31 3.56 42.02 2.90
122 123 1.002624 TTTCGGCAGCCGGAAATCT 60.003 52.632 33.31 0.00 42.02 2.40
123 124 3.585856 TTTCGGCAGCCGGAAATC 58.414 55.556 33.31 0.00 42.02 2.17
130 131 1.077429 AGGGAGAATTTCGGCAGCC 60.077 57.895 0.00 0.00 0.00 4.85
131 132 0.107459 AGAGGGAGAATTTCGGCAGC 60.107 55.000 0.00 0.00 0.00 5.25
132 133 2.409948 AAGAGGGAGAATTTCGGCAG 57.590 50.000 0.00 0.00 0.00 4.85
133 134 2.224769 ACAAAGAGGGAGAATTTCGGCA 60.225 45.455 0.00 0.00 0.00 5.69
134 135 2.162408 CACAAAGAGGGAGAATTTCGGC 59.838 50.000 0.00 0.00 0.00 5.54
135 136 3.189287 CACACAAAGAGGGAGAATTTCGG 59.811 47.826 0.00 0.00 0.00 4.30
136 137 3.815401 ACACACAAAGAGGGAGAATTTCG 59.185 43.478 0.00 0.00 0.00 3.46
137 138 5.106515 GCTACACACAAAGAGGGAGAATTTC 60.107 44.000 0.00 0.00 0.00 2.17
138 139 4.762251 GCTACACACAAAGAGGGAGAATTT 59.238 41.667 0.00 0.00 0.00 1.82
139 140 4.042187 AGCTACACACAAAGAGGGAGAATT 59.958 41.667 0.00 0.00 0.00 2.17
140 141 3.584848 AGCTACACACAAAGAGGGAGAAT 59.415 43.478 0.00 0.00 0.00 2.40
141 142 2.972713 AGCTACACACAAAGAGGGAGAA 59.027 45.455 0.00 0.00 0.00 2.87
142 143 2.609747 AGCTACACACAAAGAGGGAGA 58.390 47.619 0.00 0.00 0.00 3.71
143 144 3.070018 CAAGCTACACACAAAGAGGGAG 58.930 50.000 0.00 0.00 0.00 4.30
144 145 2.810400 GCAAGCTACACACAAAGAGGGA 60.810 50.000 0.00 0.00 0.00 4.20
145 146 1.537202 GCAAGCTACACACAAAGAGGG 59.463 52.381 0.00 0.00 0.00 4.30
146 147 2.221169 TGCAAGCTACACACAAAGAGG 58.779 47.619 0.00 0.00 0.00 3.69
147 148 3.969117 TTGCAAGCTACACACAAAGAG 57.031 42.857 0.00 0.00 0.00 2.85
148 149 4.916983 ATTTGCAAGCTACACACAAAGA 57.083 36.364 0.00 0.00 34.08 2.52
149 150 6.862608 TCATAATTTGCAAGCTACACACAAAG 59.137 34.615 0.00 0.00 34.08 2.77
150 151 6.743110 TCATAATTTGCAAGCTACACACAAA 58.257 32.000 0.00 0.00 34.97 2.83
151 152 6.206438 TCTCATAATTTGCAAGCTACACACAA 59.794 34.615 0.00 0.00 0.00 3.33
152 153 5.704978 TCTCATAATTTGCAAGCTACACACA 59.295 36.000 0.00 0.00 0.00 3.72
153 154 6.092670 TCTCTCATAATTTGCAAGCTACACAC 59.907 38.462 0.00 0.00 0.00 3.82
154 155 6.172630 TCTCTCATAATTTGCAAGCTACACA 58.827 36.000 0.00 0.00 0.00 3.72
155 156 6.668541 TCTCTCATAATTTGCAAGCTACAC 57.331 37.500 0.00 0.00 0.00 2.90
156 157 7.686438 TTTCTCTCATAATTTGCAAGCTACA 57.314 32.000 0.00 0.00 0.00 2.74
157 158 7.699812 CCTTTTCTCTCATAATTTGCAAGCTAC 59.300 37.037 0.00 0.00 0.00 3.58
158 159 7.629222 GCCTTTTCTCTCATAATTTGCAAGCTA 60.629 37.037 0.00 0.00 0.00 3.32
159 160 6.628185 CCTTTTCTCTCATAATTTGCAAGCT 58.372 36.000 0.00 0.00 0.00 3.74
160 161 5.290400 GCCTTTTCTCTCATAATTTGCAAGC 59.710 40.000 0.00 0.00 0.00 4.01
161 162 6.392354 TGCCTTTTCTCTCATAATTTGCAAG 58.608 36.000 0.00 0.00 0.00 4.01
162 163 6.343716 TGCCTTTTCTCTCATAATTTGCAA 57.656 33.333 0.00 0.00 0.00 4.08
163 164 5.981088 TGCCTTTTCTCTCATAATTTGCA 57.019 34.783 0.00 0.00 0.00 4.08
164 165 8.408601 TCTAATGCCTTTTCTCTCATAATTTGC 58.591 33.333 0.00 0.00 0.00 3.68
171 172 9.692325 AAGTAATTCTAATGCCTTTTCTCTCAT 57.308 29.630 0.00 0.00 0.00 2.90
172 173 9.167311 GAAGTAATTCTAATGCCTTTTCTCTCA 57.833 33.333 0.00 0.00 0.00 3.27
173 174 9.167311 TGAAGTAATTCTAATGCCTTTTCTCTC 57.833 33.333 4.35 0.00 0.00 3.20
174 175 9.520515 TTGAAGTAATTCTAATGCCTTTTCTCT 57.479 29.630 4.35 0.00 0.00 3.10
212 213 9.730420 GCTGTTATTTATGATGTTTTTATCCGT 57.270 29.630 0.00 0.00 0.00 4.69
213 214 9.729023 TGCTGTTATTTATGATGTTTTTATCCG 57.271 29.630 0.00 0.00 0.00 4.18
218 219 9.995003 TTTCCTGCTGTTATTTATGATGTTTTT 57.005 25.926 0.00 0.00 0.00 1.94
219 220 9.995003 TTTTCCTGCTGTTATTTATGATGTTTT 57.005 25.926 0.00 0.00 0.00 2.43
220 221 9.423061 GTTTTCCTGCTGTTATTTATGATGTTT 57.577 29.630 0.00 0.00 0.00 2.83
221 222 8.584157 TGTTTTCCTGCTGTTATTTATGATGTT 58.416 29.630 0.00 0.00 0.00 2.71
222 223 8.121305 TGTTTTCCTGCTGTTATTTATGATGT 57.879 30.769 0.00 0.00 0.00 3.06
223 224 9.027129 CATGTTTTCCTGCTGTTATTTATGATG 57.973 33.333 0.00 0.00 0.00 3.07
224 225 8.970020 TCATGTTTTCCTGCTGTTATTTATGAT 58.030 29.630 0.00 0.00 0.00 2.45
225 226 8.347004 TCATGTTTTCCTGCTGTTATTTATGA 57.653 30.769 0.00 0.00 0.00 2.15
226 227 9.027129 CATCATGTTTTCCTGCTGTTATTTATG 57.973 33.333 0.00 0.00 0.00 1.90
227 228 8.752187 ACATCATGTTTTCCTGCTGTTATTTAT 58.248 29.630 0.00 0.00 0.00 1.40
228 229 8.121305 ACATCATGTTTTCCTGCTGTTATTTA 57.879 30.769 0.00 0.00 0.00 1.40
229 230 6.996509 ACATCATGTTTTCCTGCTGTTATTT 58.003 32.000 0.00 0.00 0.00 1.40
230 231 6.594788 ACATCATGTTTTCCTGCTGTTATT 57.405 33.333 0.00 0.00 0.00 1.40
231 232 7.701539 TTACATCATGTTTTCCTGCTGTTAT 57.298 32.000 0.00 0.00 30.26 1.89
232 233 7.517614 TTTACATCATGTTTTCCTGCTGTTA 57.482 32.000 0.00 0.00 30.26 2.41
233 234 6.403866 TTTACATCATGTTTTCCTGCTGTT 57.596 33.333 0.00 0.00 30.26 3.16
234 235 6.403866 TTTTACATCATGTTTTCCTGCTGT 57.596 33.333 0.00 0.00 31.85 4.40
235 236 6.311935 CCATTTTACATCATGTTTTCCTGCTG 59.688 38.462 0.00 0.00 0.00 4.41
236 237 6.211184 TCCATTTTACATCATGTTTTCCTGCT 59.789 34.615 0.00 0.00 0.00 4.24
237 238 6.311200 GTCCATTTTACATCATGTTTTCCTGC 59.689 38.462 0.00 0.00 0.00 4.85
238 239 6.527722 CGTCCATTTTACATCATGTTTTCCTG 59.472 38.462 0.00 0.00 0.00 3.86
239 240 6.208599 ACGTCCATTTTACATCATGTTTTCCT 59.791 34.615 0.00 0.00 0.00 3.36
240 241 6.386654 ACGTCCATTTTACATCATGTTTTCC 58.613 36.000 0.00 0.00 0.00 3.13
241 242 9.221775 GATACGTCCATTTTACATCATGTTTTC 57.778 33.333 0.00 0.00 0.00 2.29
242 243 8.735315 TGATACGTCCATTTTACATCATGTTTT 58.265 29.630 0.00 0.00 0.00 2.43
243 244 8.275015 TGATACGTCCATTTTACATCATGTTT 57.725 30.769 0.00 0.00 0.00 2.83
244 245 7.857734 TGATACGTCCATTTTACATCATGTT 57.142 32.000 0.00 0.00 0.00 2.71
245 246 7.857734 TTGATACGTCCATTTTACATCATGT 57.142 32.000 0.00 0.00 0.00 3.21
246 247 7.804600 CCATTGATACGTCCATTTTACATCATG 59.195 37.037 0.00 0.00 0.00 3.07
247 248 7.502226 ACCATTGATACGTCCATTTTACATCAT 59.498 33.333 0.00 0.00 0.00 2.45
248 249 6.826231 ACCATTGATACGTCCATTTTACATCA 59.174 34.615 0.00 0.00 0.00 3.07
249 250 7.132213 CACCATTGATACGTCCATTTTACATC 58.868 38.462 0.00 0.00 0.00 3.06
250 251 6.039270 CCACCATTGATACGTCCATTTTACAT 59.961 38.462 0.00 0.00 0.00 2.29
251 252 5.355630 CCACCATTGATACGTCCATTTTACA 59.644 40.000 0.00 0.00 0.00 2.41
252 253 5.732247 GCCACCATTGATACGTCCATTTTAC 60.732 44.000 0.00 0.00 0.00 2.01
253 254 4.336993 GCCACCATTGATACGTCCATTTTA 59.663 41.667 0.00 0.00 0.00 1.52
254 255 3.130340 GCCACCATTGATACGTCCATTTT 59.870 43.478 0.00 0.00 0.00 1.82
255 256 2.687935 GCCACCATTGATACGTCCATTT 59.312 45.455 0.00 0.00 0.00 2.32
256 257 2.297701 GCCACCATTGATACGTCCATT 58.702 47.619 0.00 0.00 0.00 3.16
257 258 1.476833 GGCCACCATTGATACGTCCAT 60.477 52.381 0.00 0.00 0.00 3.41
258 259 0.107410 GGCCACCATTGATACGTCCA 60.107 55.000 0.00 0.00 0.00 4.02
259 260 0.180406 AGGCCACCATTGATACGTCC 59.820 55.000 5.01 0.00 0.00 4.79
260 261 1.583054 GAGGCCACCATTGATACGTC 58.417 55.000 5.01 0.00 0.00 4.34
261 262 0.180406 GGAGGCCACCATTGATACGT 59.820 55.000 15.24 0.00 0.00 3.57
262 263 0.535102 GGGAGGCCACCATTGATACG 60.535 60.000 21.72 0.00 0.00 3.06
263 264 0.535102 CGGGAGGCCACCATTGATAC 60.535 60.000 21.72 0.28 0.00 2.24
264 265 1.836391 CGGGAGGCCACCATTGATA 59.164 57.895 21.72 0.00 0.00 2.15
265 266 2.597340 CGGGAGGCCACCATTGAT 59.403 61.111 21.72 0.00 0.00 2.57
266 267 4.424711 GCGGGAGGCCACCATTGA 62.425 66.667 21.72 0.00 34.80 2.57
267 268 4.738998 TGCGGGAGGCCACCATTG 62.739 66.667 21.72 10.96 42.61 2.82
268 269 3.721370 GATGCGGGAGGCCACCATT 62.721 63.158 21.72 1.79 42.61 3.16
269 270 4.195334 GATGCGGGAGGCCACCAT 62.195 66.667 21.72 5.86 42.61 3.55
271 272 4.864334 CAGATGCGGGAGGCCACC 62.864 72.222 11.39 11.39 42.61 4.61
272 273 4.101448 ACAGATGCGGGAGGCCAC 62.101 66.667 5.01 0.00 42.61 5.01
273 274 4.100084 CACAGATGCGGGAGGCCA 62.100 66.667 5.01 0.00 42.61 5.36
274 275 4.101448 ACACAGATGCGGGAGGCC 62.101 66.667 0.00 0.00 42.61 5.19
275 276 2.512515 GACACAGATGCGGGAGGC 60.513 66.667 0.00 0.00 43.96 4.70
276 277 2.187946 GGACACAGATGCGGGAGG 59.812 66.667 0.00 0.00 0.00 4.30
277 278 2.187946 GGGACACAGATGCGGGAG 59.812 66.667 0.00 0.00 0.00 4.30
278 279 3.770040 CGGGACACAGATGCGGGA 61.770 66.667 0.00 0.00 0.00 5.14
279 280 4.082523 ACGGGACACAGATGCGGG 62.083 66.667 0.00 0.00 0.00 6.13
280 281 2.815211 CACGGGACACAGATGCGG 60.815 66.667 0.00 0.00 0.00 5.69
281 282 2.815211 CCACGGGACACAGATGCG 60.815 66.667 0.00 0.00 0.00 4.73
282 283 2.662596 TCCACGGGACACAGATGC 59.337 61.111 0.00 0.00 0.00 3.91
305 306 3.797353 CCGTCCATGGACAGGGGG 61.797 72.222 37.42 27.91 44.77 5.40
306 307 2.072487 ATCCGTCCATGGACAGGGG 61.072 63.158 37.42 30.51 44.77 4.79
307 308 1.146930 CATCCGTCCATGGACAGGG 59.853 63.158 37.42 31.14 44.77 4.45
308 309 1.524621 GCATCCGTCCATGGACAGG 60.525 63.158 37.42 34.77 44.77 4.00
309 310 0.812811 CTGCATCCGTCCATGGACAG 60.813 60.000 37.42 29.51 44.77 3.51
310 311 1.221566 CTGCATCCGTCCATGGACA 59.778 57.895 37.42 23.72 44.77 4.02
311 312 0.107703 TTCTGCATCCGTCCATGGAC 60.108 55.000 31.59 31.59 41.85 4.02
312 313 0.178767 CTTCTGCATCCGTCCATGGA 59.821 55.000 11.44 11.44 43.58 3.41
313 314 0.178767 TCTTCTGCATCCGTCCATGG 59.821 55.000 4.97 4.97 0.00 3.66
314 315 2.028420 TTCTTCTGCATCCGTCCATG 57.972 50.000 0.00 0.00 0.00 3.66
315 316 2.787473 TTTCTTCTGCATCCGTCCAT 57.213 45.000 0.00 0.00 0.00 3.41
316 317 2.559698 TTTTCTTCTGCATCCGTCCA 57.440 45.000 0.00 0.00 0.00 4.02
317 318 4.168760 CAAATTTTCTTCTGCATCCGTCC 58.831 43.478 0.00 0.00 0.00 4.79
318 319 4.618489 CACAAATTTTCTTCTGCATCCGTC 59.382 41.667 0.00 0.00 0.00 4.79
319 320 4.278170 TCACAAATTTTCTTCTGCATCCGT 59.722 37.500 0.00 0.00 0.00 4.69
320 321 4.797471 TCACAAATTTTCTTCTGCATCCG 58.203 39.130 0.00 0.00 0.00 4.18
321 322 5.776744 ACTCACAAATTTTCTTCTGCATCC 58.223 37.500 0.00 0.00 0.00 3.51
322 323 6.698766 ACAACTCACAAATTTTCTTCTGCATC 59.301 34.615 0.00 0.00 0.00 3.91
323 324 6.576185 ACAACTCACAAATTTTCTTCTGCAT 58.424 32.000 0.00 0.00 0.00 3.96
324 325 5.964758 ACAACTCACAAATTTTCTTCTGCA 58.035 33.333 0.00 0.00 0.00 4.41
325 326 5.172053 CGACAACTCACAAATTTTCTTCTGC 59.828 40.000 0.00 0.00 0.00 4.26
326 327 6.258160 ACGACAACTCACAAATTTTCTTCTG 58.742 36.000 0.00 0.00 0.00 3.02
327 328 6.436843 ACGACAACTCACAAATTTTCTTCT 57.563 33.333 0.00 0.00 0.00 2.85
328 329 6.745450 TCAACGACAACTCACAAATTTTCTTC 59.255 34.615 0.00 0.00 0.00 2.87
329 330 6.616947 TCAACGACAACTCACAAATTTTCTT 58.383 32.000 0.00 0.00 0.00 2.52
330 331 6.189677 TCAACGACAACTCACAAATTTTCT 57.810 33.333 0.00 0.00 0.00 2.52
331 332 6.745450 TCTTCAACGACAACTCACAAATTTTC 59.255 34.615 0.00 0.00 0.00 2.29
332 333 6.616947 TCTTCAACGACAACTCACAAATTTT 58.383 32.000 0.00 0.00 0.00 1.82
333 334 6.189677 TCTTCAACGACAACTCACAAATTT 57.810 33.333 0.00 0.00 0.00 1.82
334 335 5.811399 TCTTCAACGACAACTCACAAATT 57.189 34.783 0.00 0.00 0.00 1.82
335 336 5.751680 CATCTTCAACGACAACTCACAAAT 58.248 37.500 0.00 0.00 0.00 2.32
336 337 4.495679 GCATCTTCAACGACAACTCACAAA 60.496 41.667 0.00 0.00 0.00 2.83
337 338 3.002246 GCATCTTCAACGACAACTCACAA 59.998 43.478 0.00 0.00 0.00 3.33
338 339 2.543848 GCATCTTCAACGACAACTCACA 59.456 45.455 0.00 0.00 0.00 3.58
339 340 2.096218 GGCATCTTCAACGACAACTCAC 60.096 50.000 0.00 0.00 0.00 3.51
340 341 2.143122 GGCATCTTCAACGACAACTCA 58.857 47.619 0.00 0.00 0.00 3.41
341 342 1.464997 GGGCATCTTCAACGACAACTC 59.535 52.381 0.00 0.00 0.00 3.01
342 343 1.072331 AGGGCATCTTCAACGACAACT 59.928 47.619 0.00 0.00 0.00 3.16
343 344 1.464997 GAGGGCATCTTCAACGACAAC 59.535 52.381 0.00 0.00 0.00 3.32
344 345 1.071542 TGAGGGCATCTTCAACGACAA 59.928 47.619 0.00 0.00 0.00 3.18
345 346 0.684535 TGAGGGCATCTTCAACGACA 59.315 50.000 0.00 0.00 0.00 4.35
346 347 1.079503 GTGAGGGCATCTTCAACGAC 58.920 55.000 0.00 0.00 0.00 4.34
347 348 0.389817 CGTGAGGGCATCTTCAACGA 60.390 55.000 4.04 0.00 32.49 3.85
348 349 0.670546 ACGTGAGGGCATCTTCAACG 60.671 55.000 7.98 7.98 35.03 4.10
349 350 2.094182 TCTACGTGAGGGCATCTTCAAC 60.094 50.000 0.00 0.00 0.00 3.18
350 351 2.176045 TCTACGTGAGGGCATCTTCAA 58.824 47.619 0.00 0.00 0.00 2.69
351 352 1.847328 TCTACGTGAGGGCATCTTCA 58.153 50.000 0.00 0.00 0.00 3.02
352 353 2.961526 TTCTACGTGAGGGCATCTTC 57.038 50.000 0.00 0.00 0.00 2.87
353 354 3.695830 TTTTCTACGTGAGGGCATCTT 57.304 42.857 0.00 0.00 0.00 2.40
354 355 3.452627 AGATTTTCTACGTGAGGGCATCT 59.547 43.478 0.00 0.00 0.00 2.90
355 356 3.798202 AGATTTTCTACGTGAGGGCATC 58.202 45.455 0.00 0.00 0.00 3.91
356 357 3.914426 AGATTTTCTACGTGAGGGCAT 57.086 42.857 0.00 0.00 0.00 4.40
357 358 4.119442 GTAGATTTTCTACGTGAGGGCA 57.881 45.455 0.00 0.00 39.81 5.36
370 371 5.684550 ACGAAAGCGGAAAAGTAGATTTT 57.315 34.783 0.00 0.00 41.43 1.82
371 372 5.334646 GGAACGAAAGCGGAAAAGTAGATTT 60.335 40.000 0.00 0.00 43.17 2.17
372 373 4.153655 GGAACGAAAGCGGAAAAGTAGATT 59.846 41.667 0.00 0.00 43.17 2.40
373 374 3.683340 GGAACGAAAGCGGAAAAGTAGAT 59.317 43.478 0.00 0.00 43.17 1.98
374 375 3.062042 GGAACGAAAGCGGAAAAGTAGA 58.938 45.455 0.00 0.00 43.17 2.59
375 376 2.159037 GGGAACGAAAGCGGAAAAGTAG 59.841 50.000 0.00 0.00 43.17 2.57
376 377 2.145536 GGGAACGAAAGCGGAAAAGTA 58.854 47.619 0.00 0.00 43.17 2.24
377 378 0.949397 GGGAACGAAAGCGGAAAAGT 59.051 50.000 0.00 0.00 43.17 2.66
378 379 0.240145 GGGGAACGAAAGCGGAAAAG 59.760 55.000 0.00 0.00 43.17 2.27
379 380 0.465824 TGGGGAACGAAAGCGGAAAA 60.466 50.000 0.00 0.00 43.17 2.29
380 381 1.148723 TGGGGAACGAAAGCGGAAA 59.851 52.632 0.00 0.00 43.17 3.13
381 382 1.598685 GTGGGGAACGAAAGCGGAA 60.599 57.895 0.00 0.00 43.17 4.30
382 383 2.031465 GTGGGGAACGAAAGCGGA 59.969 61.111 0.00 0.00 43.17 5.54
383 384 3.053896 GGTGGGGAACGAAAGCGG 61.054 66.667 0.00 0.00 43.17 5.52
384 385 3.053896 GGGTGGGGAACGAAAGCG 61.054 66.667 0.00 0.00 44.79 4.68
385 386 2.675423 GGGGTGGGGAACGAAAGC 60.675 66.667 0.00 0.00 0.00 3.51
386 387 2.035155 GGGGGTGGGGAACGAAAG 59.965 66.667 0.00 0.00 0.00 2.62
387 388 3.956314 CGGGGGTGGGGAACGAAA 61.956 66.667 0.00 0.00 0.00 3.46
388 389 4.958158 TCGGGGGTGGGGAACGAA 62.958 66.667 0.00 0.00 0.00 3.85
391 392 4.340246 GTGTCGGGGGTGGGGAAC 62.340 72.222 0.00 0.00 0.00 3.62
408 409 4.517934 TAGGAGACGGGAGGCCGG 62.518 72.222 0.00 0.00 40.49 6.13
409 410 2.907917 CTAGGAGACGGGAGGCCG 60.908 72.222 0.00 0.00 40.49 6.13
410 411 3.228017 GCTAGGAGACGGGAGGCC 61.228 72.222 0.00 0.00 40.49 5.19
411 412 2.058595 TTGCTAGGAGACGGGAGGC 61.059 63.158 0.00 0.00 39.17 4.70
412 413 1.677637 GGTTGCTAGGAGACGGGAGG 61.678 65.000 0.00 0.00 0.00 4.30
413 414 0.970937 TGGTTGCTAGGAGACGGGAG 60.971 60.000 0.00 0.00 0.00 4.30
414 415 1.077805 TGGTTGCTAGGAGACGGGA 59.922 57.895 0.00 0.00 0.00 5.14
415 416 1.218316 GTGGTTGCTAGGAGACGGG 59.782 63.158 0.00 0.00 0.00 5.28
416 417 0.108615 CTGTGGTTGCTAGGAGACGG 60.109 60.000 0.00 0.00 0.00 4.79
417 418 0.108615 CCTGTGGTTGCTAGGAGACG 60.109 60.000 0.00 0.00 33.33 4.18
418 419 0.391793 GCCTGTGGTTGCTAGGAGAC 60.392 60.000 0.00 0.00 33.33 3.36
419 420 0.835971 TGCCTGTGGTTGCTAGGAGA 60.836 55.000 0.00 0.00 33.33 3.71
420 421 0.036732 TTGCCTGTGGTTGCTAGGAG 59.963 55.000 0.00 0.00 33.33 3.69
421 422 0.250727 GTTGCCTGTGGTTGCTAGGA 60.251 55.000 0.00 0.00 33.33 2.94
422 423 0.537143 TGTTGCCTGTGGTTGCTAGG 60.537 55.000 0.00 0.00 34.67 3.02
423 424 0.593128 GTGTTGCCTGTGGTTGCTAG 59.407 55.000 0.00 0.00 0.00 3.42
424 425 0.106967 TGTGTTGCCTGTGGTTGCTA 60.107 50.000 0.00 0.00 0.00 3.49
425 426 0.969917 TTGTGTTGCCTGTGGTTGCT 60.970 50.000 0.00 0.00 0.00 3.91
426 427 0.805711 GTTGTGTTGCCTGTGGTTGC 60.806 55.000 0.00 0.00 0.00 4.17
427 428 0.179113 GGTTGTGTTGCCTGTGGTTG 60.179 55.000 0.00 0.00 0.00 3.77
428 429 0.613292 TGGTTGTGTTGCCTGTGGTT 60.613 50.000 0.00 0.00 0.00 3.67
429 430 1.000270 TGGTTGTGTTGCCTGTGGT 60.000 52.632 0.00 0.00 0.00 4.16
430 431 1.437160 GTGGTTGTGTTGCCTGTGG 59.563 57.895 0.00 0.00 0.00 4.17
431 432 1.318886 TGGTGGTTGTGTTGCCTGTG 61.319 55.000 0.00 0.00 0.00 3.66
432 433 1.000270 TGGTGGTTGTGTTGCCTGT 60.000 52.632 0.00 0.00 0.00 4.00
433 434 1.037030 ACTGGTGGTTGTGTTGCCTG 61.037 55.000 0.00 0.00 0.00 4.85
434 435 0.324275 AACTGGTGGTTGTGTTGCCT 60.324 50.000 0.00 0.00 36.70 4.75
435 436 0.102300 GAACTGGTGGTTGTGTTGCC 59.898 55.000 0.00 0.00 38.41 4.52
436 437 0.814457 TGAACTGGTGGTTGTGTTGC 59.186 50.000 0.00 0.00 38.41 4.17
437 438 1.134175 GGTGAACTGGTGGTTGTGTTG 59.866 52.381 0.00 0.00 38.41 3.33
438 439 1.272203 TGGTGAACTGGTGGTTGTGTT 60.272 47.619 0.00 0.00 38.41 3.32
439 440 0.329931 TGGTGAACTGGTGGTTGTGT 59.670 50.000 0.00 0.00 38.41 3.72
440 441 0.738389 GTGGTGAACTGGTGGTTGTG 59.262 55.000 0.00 0.00 38.41 3.33
441 442 0.746563 CGTGGTGAACTGGTGGTTGT 60.747 55.000 0.00 0.00 38.41 3.32
442 443 0.746563 ACGTGGTGAACTGGTGGTTG 60.747 55.000 0.00 0.00 38.41 3.77
443 444 0.746563 CACGTGGTGAACTGGTGGTT 60.747 55.000 7.95 0.00 41.40 3.67
444 445 1.153249 CACGTGGTGAACTGGTGGT 60.153 57.895 7.95 0.00 35.23 4.16
445 446 1.145156 TCACGTGGTGAACTGGTGG 59.855 57.895 17.00 0.00 39.78 4.61
446 447 1.157870 GGTCACGTGGTGAACTGGTG 61.158 60.000 17.00 0.00 45.70 4.17
447 448 1.145377 GGTCACGTGGTGAACTGGT 59.855 57.895 17.00 0.00 45.70 4.00
448 449 4.043168 GGTCACGTGGTGAACTGG 57.957 61.111 17.00 0.00 45.70 4.00
452 453 1.153329 GTGGTGGTCACGTGGTGAA 60.153 57.895 17.00 0.00 44.49 3.18
453 454 2.502093 GTGGTGGTCACGTGGTGA 59.498 61.111 17.00 0.00 40.50 4.02
460 461 1.453155 GACATGGATGTGGTGGTCAC 58.547 55.000 0.00 0.00 46.23 3.67
461 462 0.036483 CGACATGGATGTGGTGGTCA 60.036 55.000 0.00 0.00 41.95 4.02
462 463 1.369091 GCGACATGGATGTGGTGGTC 61.369 60.000 0.00 0.00 41.95 4.02
463 464 1.377202 GCGACATGGATGTGGTGGT 60.377 57.895 0.00 0.00 41.95 4.16
464 465 2.114670 GGCGACATGGATGTGGTGG 61.115 63.158 0.00 0.00 41.95 4.61
465 466 2.114670 GGGCGACATGGATGTGGTG 61.115 63.158 0.00 0.00 41.95 4.17
466 467 2.272146 GGGCGACATGGATGTGGT 59.728 61.111 0.00 0.00 41.95 4.16
467 468 2.114670 GTGGGCGACATGGATGTGG 61.115 63.158 0.00 0.00 41.95 4.17
468 469 0.177836 TAGTGGGCGACATGGATGTG 59.822 55.000 1.61 0.00 41.95 3.21
469 470 0.465705 CTAGTGGGCGACATGGATGT 59.534 55.000 1.61 0.00 45.16 3.06
470 471 0.882042 GCTAGTGGGCGACATGGATG 60.882 60.000 1.61 0.00 0.00 3.51
471 472 1.337384 TGCTAGTGGGCGACATGGAT 61.337 55.000 1.61 0.00 34.52 3.41
472 473 1.960040 CTGCTAGTGGGCGACATGGA 61.960 60.000 1.61 0.00 34.52 3.41
473 474 1.522355 CTGCTAGTGGGCGACATGG 60.522 63.158 1.61 0.00 34.52 3.66
474 475 0.807667 GACTGCTAGTGGGCGACATG 60.808 60.000 1.61 0.00 34.52 3.21
475 476 1.517832 GACTGCTAGTGGGCGACAT 59.482 57.895 1.61 0.00 34.52 3.06
476 477 2.970639 GACTGCTAGTGGGCGACA 59.029 61.111 1.61 0.00 34.52 4.35
477 478 2.202623 CGACTGCTAGTGGGCGAC 60.203 66.667 6.50 0.00 34.52 5.19
478 479 2.675423 ACGACTGCTAGTGGGCGA 60.675 61.111 16.76 0.00 34.52 5.54
479 480 2.202623 GACGACTGCTAGTGGGCG 60.203 66.667 10.03 10.03 34.52 6.13
480 481 2.202623 CGACGACTGCTAGTGGGC 60.203 66.667 0.00 0.00 0.00 5.36
481 482 2.202623 GCGACGACTGCTAGTGGG 60.203 66.667 0.00 0.00 0.00 4.61
482 483 1.226435 GAGCGACGACTGCTAGTGG 60.226 63.158 0.00 0.00 44.18 4.00
483 484 1.581402 CGAGCGACGACTGCTAGTG 60.581 63.158 0.00 0.00 44.18 2.74
484 485 2.785921 CGAGCGACGACTGCTAGT 59.214 61.111 0.00 0.00 44.18 2.57
485 486 2.649349 GCGAGCGACGACTGCTAG 60.649 66.667 0.00 6.03 44.18 3.42
486 487 3.125573 AGCGAGCGACGACTGCTA 61.126 61.111 0.00 0.00 44.18 3.49
504 505 4.645921 GTTGCAGGGCGTTGTGGC 62.646 66.667 0.00 0.00 43.88 5.01
505 506 4.326766 CGTTGCAGGGCGTTGTGG 62.327 66.667 0.00 0.00 0.00 4.17
506 507 4.980903 GCGTTGCAGGGCGTTGTG 62.981 66.667 8.69 0.00 0.00 3.33
508 509 3.764810 TTTGCGTTGCAGGGCGTTG 62.765 57.895 6.58 0.00 40.61 4.10
509 510 3.483235 CTTTGCGTTGCAGGGCGTT 62.483 57.895 6.58 0.00 40.61 4.84
510 511 3.964875 CTTTGCGTTGCAGGGCGT 61.965 61.111 6.58 0.00 40.61 5.68
534 535 3.151022 GCTAGGGCCTGCGAGAGT 61.151 66.667 18.53 0.00 0.00 3.24
581 582 2.978010 CGGTGTCTGGTTGTGGGC 60.978 66.667 0.00 0.00 0.00 5.36
585 586 0.756294 TGATGACGGTGTCTGGTTGT 59.244 50.000 0.00 0.00 33.15 3.32
587 588 0.034896 GGTGATGACGGTGTCTGGTT 59.965 55.000 0.00 0.00 33.15 3.67
594 595 0.738412 GGTTACGGGTGATGACGGTG 60.738 60.000 0.00 0.00 0.00 4.94
596 597 0.459585 CTGGTTACGGGTGATGACGG 60.460 60.000 0.00 0.00 0.00 4.79
599 600 0.528924 CGTCTGGTTACGGGTGATGA 59.471 55.000 0.00 0.00 39.19 2.92
609 611 2.177531 GCGAGCGACGTCTGGTTA 59.822 61.111 14.70 0.00 44.60 2.85
619 621 2.895865 CTAGGACGAGGCGAGCGA 60.896 66.667 4.61 0.00 0.00 4.93
667 669 1.895798 AGATGAAGGCTTCTGTCGTCA 59.104 47.619 26.26 7.03 40.23 4.35
669 671 2.966050 GAAGATGAAGGCTTCTGTCGT 58.034 47.619 26.26 20.69 38.89 4.34
675 677 4.064388 GCATAGGAGAAGATGAAGGCTTC 58.936 47.826 20.27 20.27 41.53 3.86
679 681 3.648009 GTCGCATAGGAGAAGATGAAGG 58.352 50.000 0.00 0.00 0.00 3.46
692 694 2.798501 CGGTTGTGGCGTCGCATAG 61.799 63.158 20.50 0.00 32.95 2.23
714 716 2.593346 CGAAGGAGAAGGAGGACATG 57.407 55.000 0.00 0.00 0.00 3.21
737 739 1.529226 ATTGACGCCGGACATCAAAA 58.471 45.000 5.05 0.00 33.54 2.44
740 742 1.529226 AAAATTGACGCCGGACATCA 58.471 45.000 5.05 1.26 0.00 3.07
741 743 2.250188 CAAAAATTGACGCCGGACATC 58.750 47.619 5.05 0.00 0.00 3.06
743 745 1.025812 ACAAAAATTGACGCCGGACA 58.974 45.000 5.05 0.00 0.00 4.02
747 749 1.784283 GGTGAACAAAAATTGACGCCG 59.216 47.619 0.00 0.00 34.17 6.46
748 750 2.815478 TGGTGAACAAAAATTGACGCC 58.185 42.857 13.20 13.20 39.48 5.68
756 758 5.068329 TGACATACAGCATGGTGAACAAAAA 59.932 36.000 30.46 8.11 43.62 1.94
777 779 1.060698 GCGTAGTTCCGAATTGCTGAC 59.939 52.381 0.00 0.00 0.00 3.51
789 792 1.069703 GGTTTTGGGTTCGCGTAGTTC 60.070 52.381 5.77 0.00 0.00 3.01
796 799 1.202203 GAAAACGGTTTTGGGTTCGC 58.798 50.000 22.44 3.69 31.94 4.70
803 806 2.553172 TGGATACCCGAAAACGGTTTTG 59.447 45.455 22.44 14.06 34.66 2.44
804 807 2.861274 TGGATACCCGAAAACGGTTTT 58.139 42.857 18.08 18.08 34.66 2.43
810 813 4.408694 CGACAATTTGGATACCCGAAAAC 58.591 43.478 0.78 0.00 39.22 2.43
814 817 1.134340 CCCGACAATTTGGATACCCGA 60.134 52.381 0.78 0.00 34.29 5.14
816 819 2.430248 ACCCGACAATTTGGATACCC 57.570 50.000 0.78 0.00 0.00 3.69
818 821 3.805207 AGCTACCCGACAATTTGGATAC 58.195 45.455 0.78 0.00 0.00 2.24
846 849 9.618890 CCAAAATTAACATCTGAGATTCCTAGA 57.381 33.333 0.00 0.00 0.00 2.43
847 850 9.618890 TCCAAAATTAACATCTGAGATTCCTAG 57.381 33.333 0.00 0.00 0.00 3.02
848 851 9.973661 TTCCAAAATTAACATCTGAGATTCCTA 57.026 29.630 0.00 0.00 0.00 2.94
849 852 8.884124 TTCCAAAATTAACATCTGAGATTCCT 57.116 30.769 0.00 0.00 0.00 3.36
850 853 9.358872 GTTTCCAAAATTAACATCTGAGATTCC 57.641 33.333 0.00 0.00 0.00 3.01
882 885 5.355910 GGTCAGGTAATGCGGATAAAAAGAA 59.644 40.000 0.00 0.00 0.00 2.52
884 887 4.260620 CGGTCAGGTAATGCGGATAAAAAG 60.261 45.833 0.00 0.00 0.00 2.27
972 994 4.844085 TCCTTGAGGTTTGATTACAGAGGA 59.156 41.667 0.00 0.00 36.34 3.71
1406 1428 1.880819 TTCCTCGGCTGGTACGGAAC 61.881 60.000 0.00 0.00 36.31 3.62
1485 1507 3.531207 TCGCCGAGCATCTCCCAG 61.531 66.667 0.00 0.00 0.00 4.45
1770 1792 1.063492 TCAAGCCATGGAAGGATGCAT 60.063 47.619 18.40 0.00 38.25 3.96
1853 1875 1.073897 GCTTGTCCAGCCTTCCAGT 59.926 57.895 0.00 0.00 43.65 4.00
1889 1911 0.732538 GCTTACCATTGCCGCACAAC 60.733 55.000 0.00 0.00 42.27 3.32
1898 1920 8.157476 ACCATATAGGAGTAAAGCTTACCATTG 58.843 37.037 0.00 0.00 41.22 2.82
1929 1951 7.339212 TCCCAAACCAAATCATACAACTCTATG 59.661 37.037 0.00 0.00 0.00 2.23
1956 1978 6.651975 AGTTTCCTAATTAGACCGATCGAT 57.348 37.500 18.66 0.00 0.00 3.59
1958 1980 7.967303 GGTATAGTTTCCTAATTAGACCGATCG 59.033 40.741 14.28 8.51 31.12 3.69
2005 2027 4.946478 ACCATATCTGCAACTACCTCTC 57.054 45.455 0.00 0.00 0.00 3.20
2010 2032 5.095490 GCACAAAACCATATCTGCAACTAC 58.905 41.667 0.00 0.00 0.00 2.73
2065 2087 4.495349 CCTTGCAGCATCGAAATAACAGAG 60.495 45.833 0.00 0.00 0.00 3.35
2186 2210 3.069729 ACTCGGCACCATATAAACTCCTC 59.930 47.826 0.00 0.00 0.00 3.71
2187 2211 3.039011 ACTCGGCACCATATAAACTCCT 58.961 45.455 0.00 0.00 0.00 3.69
2188 2212 3.470645 ACTCGGCACCATATAAACTCC 57.529 47.619 0.00 0.00 0.00 3.85
2248 2275 8.761575 TGGAAAAGAATGAAATGCTGAAATAC 57.238 30.769 0.00 0.00 27.27 1.89
2634 2671 5.277828 GGTCAATACTTGTGTTCAGGTTGAC 60.278 44.000 0.00 0.00 39.00 3.18
2771 2808 2.295070 AGCCAATGTTTTAACGGGACAC 59.705 45.455 0.00 0.00 0.00 3.67
2904 3195 5.889289 TGGCCAAAGTATATCCTACCAAAAC 59.111 40.000 0.61 0.00 0.00 2.43
2944 3235 8.656806 CATGTAAATAGGGACAAAGGGAGTATA 58.343 37.037 0.00 0.00 0.00 1.47
3063 3354 9.342308 CCTCTGCCTCACTAAAATTTAATATGA 57.658 33.333 0.00 0.00 0.00 2.15
3064 3355 9.342308 TCCTCTGCCTCACTAAAATTTAATATG 57.658 33.333 0.00 0.00 0.00 1.78
3065 3356 9.566432 CTCCTCTGCCTCACTAAAATTTAATAT 57.434 33.333 0.00 0.00 0.00 1.28
3073 3364 2.234908 GCTCTCCTCTGCCTCACTAAAA 59.765 50.000 0.00 0.00 0.00 1.52
3075 3366 1.479709 GCTCTCCTCTGCCTCACTAA 58.520 55.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.