>input_sequence_60863
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-------------------------------------------------------------AATGACAAATAGTCAATTT
CCTCTTCCGATACGCCTCTCCAGGGCGCGATTTTTTCCGTCCCCTCTGGCGCACCCATGGCTTCTCCGTATCTCCTTCAC
CGTCTCACCGCCGACGAGATCTTCCAAACTCTAGAGGCTTCCTCCTCCACGTCCTCCTCATGCTACGATGCCTTCGTGCC
GGTGTTCCGCCCAGATCCCTCGGCCTCCTCCCTATCCGTGTCGGCGGCCGACCGCGTCCGGAGCCAGTTCCTCTCCGTGG
AGCGCGACCTCTTCCACGACGCACTCGTCGCGCCCAGGAATGACGACCTCGGCTTCCCCGAGGAGAACGATGAGGAGGAG
GAGGCCTCGATCCGGTGGGATTGCTTCCAATTGGACGAGGAGGAGGAGCCAGATCTGCCGCTGGAGGGTTCCGTACCAGC
CGAGGAATTCGACTGGGAGGAAGTCGCGTTCGCCTCCGGACCCTTGGTGGAGAATCCGGAGCCCGACTGGGAGATGCTCG
GCGACATGCCGCCCAACGCTCCCGCCGGCGCTAACGAGGGTTTCGTGTACACCTCTGACAGGGAGGCGTATGAGGTGCTC
GTCGCTGTTGGGGATGGGCTTTTCCTCACCAACAAGCCGCCGGCAGCCAGGTCGGCTGTCAAGGCGCTGCCATCCGCCAT
CGTCGCCGCTGGCGAGGAAGGGGAGGGCGAGGAGTGCTCCGTGTGTAAGGACGGGGTTGTGGCGGGGGAGCGCGTCAAGA
TGATGCCTTGCTCCCATCGGTACCATGAGGAATGCATCCTTCCATGGCTTGAGGTGCGCAACTCCTGCCCACTCTGCCGC
TTTGAGCTGCCGACCGACAATCCCAAGTACGAGAACTGGAAGGCTGGACAAGCCATGGCTGCCTGAATGAGTTGTGCGGC
AATGGTAAGCTTTACTCCTATATGGTTTTACATAGAGTTGTATGATTTGGTTTGGGAATCGATCGGTCTAATTAGGAAAC
TATACCCAGTTGTATGAAGGAAAACAGAGAGGTAGTTGCAGATATGGTTTTGTGCATTTTGATCTGTTACTGTTCGCAAG
AGAGATCTCTGTTATTTCGATGCTGCAAGGATTATA--------------------------------------------
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>chr7D_1_TraesCS7D01G246300
GGGCCCCCTCTAGTACTTATTGGCTCCAATATTCCTCAAATATTTCATAAAAAATCTCCGTGAAGTTTCAGCTTGTTTGG
AGTTGTGCAGAATAGATAGCCTGACGTAGCTTTTCCAGATCCAGATTTCCGGCTGCCGAAATTCTCCCTCTTTGTGTGTA
GCTTGCAAATTATGAGAGAAAAGGCATTAGAATTACTTCAAAAAACATTATTACGGATAAAAACATCATAAATAACAGCA
GGAAAACATGATGTAAAATGGACGTATCAATGGTGGCCTCCCGCATCTGTGTCCCGTGGACTGCCCCCCCTGTCCATGGA
CGGATGCAGAAGAAAATTTGTGAGTTGTCGTTGAAGATGCCCTCACGTAGAAAATCTACTTTTCCGCTTTCGTTCCCCAC
CCCCGACACCGGCCTCCCGTCTCCTAGCAACCACAGGCAACACAACCACCAGTTCACCACGTGACCACCACATCCATGTC
GCCCACTAGCAGTCGTCGCTCGCTGCCACAACGCCCTGCAACGCAAAGCCGACTACTCTCGCAGGCCCTAGCGCACAACC
GCTCTACCTAGCCACAGCGCCGCCCACAACCAGACACCGTCATCA-CCCGTAACCAGACGTCGCTCGCCTCGTCCTAGGC
TTGCTTGCACCACAAGGACGAGCTCCAATGACGACAGAAGCCTTCATCTTCTCCTATGCGACGCCACAACCGACTCATGT
CCTCCTTCTCCTTCGGTATTTTGATGTCCGGCGTCAATTTTTGTTCACCATGCTGTATGTCAG-CAATTCGGAACTACGC
GAACCCAAAACCGTTTTCGGGTATCCAAATTGTCGGGTAGCTATTTTTTCTAGGAATCTCAGATGTTAATTTTGGAAACT
CTGATTCTTTTTATCCGCATTACCTGACCGGAA--TTTTGGGTAAACCCGAATGCCCAGGCTCACGGAGC----------
-------CCACCCACCCACTCCCCAGTATATGTTCCTCTGTAATCAAACCTCAAGGACCTCAATGACAAATAGTCAATTT
CCTCTTCCGATACGCCTCTCCAGGGCGCGATTTTTTCCGTCCCCTCTGGCGCACCCATGGCTTCTCCGTATCTCCTTCAC
CGTCTCACCGCCGACGAGATCTTCCAAACTCTAGAGGCTTCCTCCTCCACGTCCTCCTCATGCTACGATGCCTTCGTGCC
GGTGTTCCGCCCAGATCCCTCGGCCTCCTCCCTATCCGTGTCGGCGGCCGACCGCGTCCGGAGCCAGTTCCTCTCCGTGG
AGCGCGACCTCTTCCACGACGCACTCGTCGCGCCCAGGAATGACGACCTCGGCTTCCCCGAGGAGAACGATGAGGAGGAG
GAGGCCTCGATCCGGTGGGATTGCTTCCAATTGGACGAGGAGGAGGAGCCAGATCTGCCGCTGGAGGGTTCCGTACCAGC
CGAGGAATTCGACTGGGAGGAAGTCGCGTTCGCCTCCGGACCCTTGGTGGAGAATCCGGAGCCCGACTGGGAGATGCTCG
GCGACATGCCGCCCAACGCTCCCGCCGGCGCTAACGAGGGTTTCGTGTACACCTCTGACAGGGAGGCGTATGAGGTGCTC
GTCGCTGTTGGGGATGGGCTTTTCCTCACCAACAAGCCGCCGGCAGCCAGGTCGGCTGTCAAGGCGCTGCCATCCGCCAT
CGTCGCCGCTGGCGAGGAAGGGGAGGGCGAGGAGTGCTCCGTGTGTAAGGACGGGGTTGTGGCGGGGGAGCGCGTCAAGA
TGATGCCTTGCTCCCATCGGTACCATGAGGAATGCATCCTTCCATGGCTTGAGGTGCGCAACTCCTGCCCACTCTGCCGC
TTTGAGCTGCCGACCGACAATCCCAAGTACGAGAACTGGAAGGCTGGACAAGCCATGGCTGCCTGAATGAGTTGTGCGGC
AATGGTAAGCTTTACTCCTATATGGTTTTACATAGAGTTGTATGATTTGGTTTGGGAATCGATCGGTCTAATTAGGAAAC
TATACCCAGTTGTATGAAGGAAAACAGAGAGGTAGTTGCAGATATGGTTTTGTGCATTTTGATCTGTTACTGTTCGCAAG
AGAGATCTCTGTTATTTCGATGCTGCAAGGATTATACATATTTTAATGCTA--TATATACAATGTTGTATCTGTTCTAAA
TTTAGAGAGAATAGTTGTGCTGGGAAATTTTGTAGATGCATATTTGGACGAGGAGTTTATATGGTGCC---GAGTTGCAA
CTTACTGGTCGTGAATTCAGTTTCAGAATGAGTTGTATTTCAGCATTTCATTCTTTTCCATTGTGAATTTTTAAGGTGTT
TGATAGGGAAAGTTAATTGCAAATTCATACTGTGTTCTATCTTGGAACATTTGACAACCTTTTGATACGAAGTGGAATGT
GTCAGGCTGAATGGG---TTATATT--GAGAGGCGAGAAAGTTTGCTTATTCAACATTATCTTGTTAGATGTAATGATTG
AATGGTGGCTATGCTAGCAGGAGTCTTAGCTGTAAGGAATGCTTCGTTGAAACTA--GTTACTTTGTTGGGCTCTCTTCA
TCTTATTTTCTTTCTTCTTTACTATATTTCTTTATAAATCAAAATGA---TAATTGTTTCTCAAGTACAACCAACAGCTA
GTAGAAATTTTTGTGTCTAATGACCCAACAGTCAACCTGAACACAAGTATTGACCTTTGTGTCATTTCACATTGTATGAG
ATCCCCAGAACAATAACTTCTGGTTTCCATATAAGTGGCTGGGCTTACATCCTGGTTTTACTATGTGTGTTTGGTTTATG
CCCAAAGGTGTCCCGTTAAAACATTGGCTAGCCAAATTTTTGGTCGTCCATGAGCTGGCCGACATTGGCAAGAAAAATGA
ATTAGAGTTT----------------------------------------------------------------------
------------------------------------------------GAGTGCATTGGCATGCCAAAAAGTTGGCAACC
ATCCAAACA-----------------------------------------------------------------------
-----------------------------------------------ATGA------------------CCAAAGTTTTG
GTAGGATATACTTTGGCCACAATCCAAACATACCTATACTCCCTTTGTCCCTATTTACATGGCACATACATATTTCGAGT
TTCAACTTTGACCATCAGTTCGACTAACAAAACATGTGCCATATGTCAGAAAAATTGTACCATTCAATTCAATTCATATT
AAATTTTAGTGAGGCAGAGGAGAGC
>chr7A_514
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---------------------------------CCCTGCAACGCAAAGCCGACTGCTCTCGCATGCCCTAGCGCACAACC
GCTCTACCTAGCCACCGCGCCACCCGCGACCAGATATCGGCGTCGCCCCGCAACCAGGTGCCACTCGCCTCGTCCTA-GC
TAGCTTGCACCACGGGGACGAGCTCCAACGCCGACATAAGTCTTCATCTTCTCGTATGCGACGCCACAACCGACTTGTG-
--TCCTCCTCCTTCGGTACTTCCACGTCTAGCGTCAACTTTTGTTCACCATGTTGTATTTCAGGCAATTCGAAACTACTC
GAACCTGAAACCATTTCCAGATATCCAAATTATCGGGTAGCTATTTTTATAGAAAATCTCAGATGTTAATTTTGGAAATC
CAATATTTT------------------------TTTTATCGAATTACCCGAATGCCAGGCCTCACAAGTCACAACACACG
GAACCCACCACCCACCCACTCCCCAGTATATCAACCTCTGTAATCAAACCTCAAGGACCTCAATGACAAATAGTCAATTT
CCTCTTCCGATACGCCTCTCCAGGGCGCGATTTTTTCCGTCCCCTCTCGCGCACCCATGGCTTCCCCGTATCTCCTTCAC
CGTCTCACCGCCGACGAGATCTTCCAAACTCTAGAGGCTTCCTCCTCCACGTCCTCCTCATGCTACGATGCCTTCGTGCC
GGTGTTCCGCCCAGATCCCTCGGCCTCCGCCCTGTCGGTGTCGGCGGCCGACCGCGTCCGGAGCCAGTTCCTCTCCGTGC
AGCGCGACCTCTTCCACGACGCACTCGTCGCGCCCAGGAATGATGACCTCAGCTTCCCCGAGGAGAACGATGAGGAGGAG
GAGGCCTCGATCCGGTGGGATTGCTTCCAATTGGACGAGGAGGAGGAGCCAGATCTGCCGCTGGAGGCTTCCGTACCAGC
CGAGGAATTCGACTGGGAGGAAGTCGCGTTCGCCTCTGGACCCTCGGTAGAGAATCCGGAGCCCGATTGGGAGATGCTCG
GCGACATGCCGCCCAGCGCTCCCGCCGGCGCCAACGAGGGTTTCGTGTACACCTCTGACAGGGAGGCCTATGAGGTACTC
GTCGCTGTTGGGGATGGGCTTTTCCTCACCAACAAGCCGCCGGCAGCCAGGTCGGCTGTCAAGGCGCTCCCATCCGCCAT
CGTCGCCGCCGGCGAGGAAGGGGAGGGAGAGGAGTGTTCCGTGTGTAAGGACGGGGTTGTGGCGGGGGAGCGCGTCAAGA
TGATGCCTTGCTCCCATCGGTACCACGAGGATTGCATCCTTCCATGGCTTGAGGTGCGCAACTCCTGCCCACTCTGCCGC
TTTGAGCTGCCGACAGACAATCCCAAGTACGAGACCTGGAAGGCTGAACGAGCCATGGCTGCCTGAATGAATTGTGCGGT
AATGGTAAGCTTTACCCC--TATGGTTTTATATAGAGTTGTATGATTTGGTTTGGGATT-GATCGGTCTAATTAGGAAAC
TATACCCAGTTGTATGGACGAAAACATAGAGTTAGTCGCAGATATGGTTTTGTGCATTTTGATCTGTTACTGTTCGCAAG
AGAGATTTCTGTTATTTCGATGCTGCAAGGATTATACATATTTAAATGCTA--TATATACAATGTTGTATCTGTTCTAAA
TTTAGAGAGAATAGCTGTGCTGGGAAATTTTGTAGATGCATATTTGGAC---GAGTTTATATGGTGCC---GAGTTGCAA
CTTACTGGTCGTGAATTCAGTTTCAGAATGAGTTATATTTCAGTATTTCATTCTTTTCCATTGTGAATTTTTAAGGTGTT
TGATAGGGAAAGTTAATTGCAAATTCATACTGTGTTCTATCTTGGAACATTTGACAACCTTTTGATACGAAGTGGAATGT
GTCAGGCTGAATGGGTTGTTATATT--GAGAGGCGAGAAAATTTGCTTACTCAACATTATCTTGTTAGATGTAATGATTG
AATGGTGGCTATGCTAGGAGGAGTCTTAGCTGTCTGGAATGCTTCGTTGAAACTATAGTTACTTTGTTGGGCTCTCTGTC
TTATTC--TCTTTCTTCTTTACTATATTTCTTGATAAATCAAAATGATATTAATTGTTTCTCAAGTACAACCAACAGCTA
GTAGAAATATCTGCGTCTAATGACCCAACACTGAACCTGAACACAAGTATTGACCTTTGTGTCATTTCACATTGTATGAG
GTCCCCAGAACAATAACTTCTGGTTTCCATATAAGTGGCTGGGCTTACATCCTGGTTTTACTATGTGTGTTTGGTTTATG
CCCAAAGTTGTCCCATTAAAACATTGGCTAGCCAAATTTTTGGTTGTCCATGAGCTGGCCGACATTGGCAAGAAAAATGA
ATTAGAGTTT----------------------------------------------------------------------
------------------------------------------------GAGTGCATTGGCATGCCAAAAAGTTGGCAACC
ATCCAAACG-----------------------------------------------------------------------
-----------------------------------------------ATGACCAAATTTTTGGTCATGACCAAAATTTTG
GTAGGATATACTTTGGCCACAATCCAAATATACCCATACTCCCTTTGTTCCTATTTACATGGCACATACATATTTCGAGT
TTCATCTTTGACCATCCGTTCAACTAACAAAGC--GTGTCATATGTCAGAAAAATTGTACCATTCAATTCA-----TATT
AAAATGTAGTGAGGCAGAGGAGAGC
>chr7B_853
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------------------------------------------------------AATCTCAGATGTTAATTTTGGAAACT
CTGAATTTTTTTATCCGCATTACCTGACCGGAATTTTTTGGGTAAACCCGAATGCCCAGGCTCACGGAAC----------
-------CCACCCACCCACTCCCCAGTATATGTACCTCTGTAATCAAACCTCAAGGACCTCAATGACAAATAGTCAATTT
CCTCTTCCGATACGCCTCTCCAGGGCGCGATTTTTTCCGTCCCCTCTGGCGCACCCATGGCTTCTCCGTATCTCCTTCAC
CGTCTCACCGCCGACGAGATCTTCCAAACTCTAGAGGCTTCCTCCTCCACGTCCTCCTCATGCTACGATGCCTTCGTGCC
GGTGTTCCGCCCAGATCCCTCGTCCTCCTCCCTGTCGGTGTCGGCGGCCGACCGCGTCCGGAGCCAGTTCCTCTCTGTGG
AGCGCGACCTCTTCCACGACGCACTCGTCGCACCCCGGAATGACGACCTCGGCTTCCCCGAGGAGAACGATGAGGAGGAG
GAGGCCTCGATCCGGTGGGATTGCTTCCAATTGGACGAGGAGGAGGAGCCAGATCTGCCGCTGGAGGCTTCCGTATCAGC
CGAGGAATTCGACTGGGAGGAAGTCGCGTTCGCCTCCGGACCCTTGGTAGAGAATCCGGAGCCCGATTGGGAGATGCTCG
GCGACATGCCGCCCAGCGCTCCCGCCGGCGCCAACGAGGGTTTCGTGTACACCTCTGACAGGGAGGCCTATGAGGTGCTC
GTCGCTGTTGGCGATGGGCTTTTCCTCACCAACAAGCCGCCGGCAGCCAGGTCGGCTGTCAAGGCGCTCCCATCCGCCAT
CCTCGCCGCCGGCGAGGAAGGGGAGGGAGAGGAGTGCTCCGTGTGTAAGGACGGGGTTGTGGCGGGGGAGCGCGTCAAGA
TGATGCCTTGCTCCCATCGGTACCATGAGGACTGCATCCTTCCATGGCTTGAGGTGCGCAACTCCTGCCCGCTCTGCCGC
TTTGAGCTGCCGACCGACAATCCCAAGTACGAGACCTGGAAGGCTGGACGAGCCATGGCTACCTGAATGAATTGTGCGGT
AATGGTAAGCTTTACCCC--TATGGTTTTATATAGAGTTGTATGATTTGGTTTGGGATT-GATCGGTCTAATTAGGAAAC
TATACCCAGTTGTATGAAGGAAAACATAGAGTTTGTTGCAGATATGGTTTTGTGCATTTTGATCTGTTACTGTTCGCAAG
AGAGATATCTTTTATTTCGATGCTGCAAGGATTATACATATTTAAATGCTATATATATACAATGTTGTATCTGTTCTAAA
TTTAGAGAGAATAGTTGTGCTGGGAAATTTTATAGATGCATATTTGGAC---GAGGAGTTTATATGGCGTTGAGTTGCAA
CTTACTGGTCGTGAATTCAGTTTCAGAACGAGTTATATTTCAGCATTTCATTCTTTTTCATTGTGAGTTTTTAAGGTGTT
TGATAGGGAAAGTTATTTGCAAATTCATACTGTGTTCTATCTTGGAACATTTGACAACCTTTTGATACGAAGTGAAATGT
GTCAGGCTGAGCGGGTTGTTATATTTTGAGAGGCGAGAAAATTTGCTTATTCAACATTATCTTGTTAGATGTAATGATTG
AATGGTGGCTATGCTAGCAGGAGTCTTAGCTGTAAGGAATGCTTCGTTGAAACTATAGTTGCTTTGTTGGGCTCTCTCCG
TCTTATTTTCTTTCTTCTTTACTATATTTGTTTATAAATCAAAATGATATTAATTGTTTCTCAAGTACAACCAACAGCTA
GTAGAAATTTCTGTGTTTAATGACCCAACACTCAACCTGAACCCAAGTATTGACCTTTGTGTCATTTCACATTGTATGAG
ATCCCCAGAACAATAACTTCTGGTTTCCATATAAGTGGCTGGGCTTACATCCTGGTT-TACTATGTCTGTTTGGTTTATG
CCCAAAGTTGTCCCATTAAAACATTGGCTAGCCAAAATTTTGGTCGTCCATGAGCTGTCCGACATTGGCAAGAAAAATGA
ATTAGGGTGTGTTTGGTTTGTGCCCAAGGTTGCCCCACCAAAGCATTGGCTTGCCAAAATTTTGGTTGAGGTTTTGGTTG
CCCATGATTTGGCCAACATTGGCAAGAAAAATGAACTAGAGTTGGCTAGAGTTCATTGGCATGCCAAAAAATTGGCAACC
ATCCAAACAAAAATCGATCTTTGGGTCATGACCAAAATTTTGGTAAGGTGCACTTTGGCCACAATCCAAACACACCCTTA
GAGTTTGAGTGCATTGGCGTGACAAAAAGTTGGAAACCATCCAAACAATGACCAAATTTTTGGTCATGACCAAAATTTTG
GTAGGATATACTTTGGCCACAATCCAAACATACCCATACTCCCTTTGTCCCTATTTACATGGCACATACATATTTCGAGT
TTCAACTTTGACCATCAGTTTGACTAACAAAACATGTGTCATATGTCAGAAAAATTATATCATTCAATTCA-----TATT
AAAATGTAGTGAGGCAGAGGAGAGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S--------S----------------
---------------S-----S---S-S------S-S--S-S--S-----S------SS-S-S--------------S--
-S-----------SS-------------S-S-----S---S------------S---------------------SS--S
SS----S-----------S--SS-S---SS-------S--------------S-----S------------S------S-
-----SS-----S---S-S-S----------S----------------SSSSSS--------------------------
----S-S-------------------------------------------------------------S-----------
---------------------------------S----------------------------------------------
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---------------------------------S--S-------------------------------------------
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-------------------------------------------------------------------S------------
------------------------------------------------S-----------------S-------------
---------------S---------------S-----------------------------------S------------
--------------------------------------------------------------------S-----------
---------S-----------------S----------------------------------------------------
-------------------------------S------------------------------------------------
----------------------------------S--------------S--------------------S--------S
---------------S--SS----------S--------------------------S-S--------------------
--------------------------S----S------------------------------------------------
------S------------------------------------S------------------------------------
-------------------------------------------------SSS----------------------------
----------------------------------S---------------------------------------------
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----------------------------------------S---------------------------------------
-----------------------------------------------------------------------------S-S
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----------S-------------------S-------------------------------------------------
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-------S------S-----------------------------------------------------------------
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--------------------------------------------------------------------------S-----
----------------------------------S---------------------------------------------
--------------------------------------S--------------------------------SSSSS----
---S-S-------------------
>forward_669
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---------CCACAAGGACGAGCTCCAAT---------------------------------------------------
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>reverse_1911
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----------------------------------------------------------------------GTTGTGCGGC
AATGGTAAGC----------------------------------------------------------------------
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>forward_677
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-----------------ACGAGCTCCAATGACGACAG-------------------------------------------
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>reverse_2211
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--------------------------------------------------AGGAGTTTATATGGTGCCGAGT--------
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