Multiple sequence alignment - TraesCS7D01G243900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G243900 chr7D 100.000 2729 0 0 1 2729 211404957 211407685 0.000000e+00 5040.0
1 TraesCS7D01G243900 chr7D 94.079 456 26 1 2275 2729 146396032 146396487 0.000000e+00 691.0
2 TraesCS7D01G243900 chr7D 83.333 84 9 4 1984 2064 449507263 449507344 3.770000e-09 73.1
3 TraesCS7D01G243900 chr7A 90.547 2137 123 45 1 2113 223470984 223473065 0.000000e+00 2754.0
4 TraesCS7D01G243900 chr7B 92.151 1911 78 33 4 1870 190117690 190115808 0.000000e+00 2632.0
5 TraesCS7D01G243900 chr7B 92.823 209 13 1 1741 1947 190101307 190101099 4.420000e-78 302.0
6 TraesCS7D01G243900 chr7B 80.899 356 43 14 1936 2268 190099878 190099525 9.700000e-65 257.0
7 TraesCS7D01G243900 chr7B 80.000 120 14 7 1980 2095 339021628 339021515 2.250000e-11 80.5
8 TraesCS7D01G243900 chr2D 94.286 455 26 0 2275 2729 379951563 379951109 0.000000e+00 697.0
9 TraesCS7D01G243900 chr2D 93.640 456 28 1 2275 2729 431966895 431966440 0.000000e+00 680.0
10 TraesCS7D01G243900 chr2D 83.206 131 19 3 1981 2108 591955395 591955265 1.720000e-22 117.0
11 TraesCS7D01G243900 chr2A 94.066 455 27 0 2275 2729 197245373 197244919 0.000000e+00 691.0
12 TraesCS7D01G243900 chr2A 88.889 72 5 3 1982 2051 733712898 733712828 4.840000e-13 86.1
13 TraesCS7D01G243900 chr6D 94.066 455 26 1 2275 2729 460998896 460998443 0.000000e+00 689.0
14 TraesCS7D01G243900 chr4D 93.846 455 28 0 2275 2729 5829112 5829566 0.000000e+00 686.0
15 TraesCS7D01G243900 chr4D 93.640 456 28 1 2275 2729 326983423 326983878 0.000000e+00 680.0
16 TraesCS7D01G243900 chr4D 78.829 222 27 11 1980 2183 73219179 73219398 6.130000e-27 132.0
17 TraesCS7D01G243900 chr4D 83.465 127 16 5 1984 2109 482519615 482519737 2.220000e-21 113.0
18 TraesCS7D01G243900 chr4D 91.489 47 2 2 688 733 121399781 121399826 2.270000e-06 63.9
19 TraesCS7D01G243900 chr5D 93.846 455 27 1 2275 2729 522476937 522477390 0.000000e+00 684.0
20 TraesCS7D01G243900 chrUn 93.640 456 28 1 2275 2729 286654455 286654000 0.000000e+00 680.0
21 TraesCS7D01G243900 chr5B 82.014 139 18 5 1981 2113 701510410 701510273 7.990000e-21 111.0
22 TraesCS7D01G243900 chr5B 76.812 138 26 5 1977 2113 27801824 27801956 3.770000e-09 73.1
23 TraesCS7D01G243900 chr2B 80.147 136 22 5 1980 2113 693317177 693317309 2.240000e-16 97.1
24 TraesCS7D01G243900 chr4A 89.362 47 4 1 688 733 556384622 556384576 1.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G243900 chr7D 211404957 211407685 2728 False 5040.0 5040 100.000 1 2729 1 chr7D.!!$F2 2728
1 TraesCS7D01G243900 chr7A 223470984 223473065 2081 False 2754.0 2754 90.547 1 2113 1 chr7A.!!$F1 2112
2 TraesCS7D01G243900 chr7B 190115808 190117690 1882 True 2632.0 2632 92.151 4 1870 1 chr7B.!!$R1 1866
3 TraesCS7D01G243900 chr7B 190099525 190101307 1782 True 279.5 302 86.861 1741 2268 2 chr7B.!!$R3 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 987 0.502275 CAAAATCGCGCGCAAAAACT 59.498 45.0 32.61 7.38 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2522 3835 0.036306 AACGGATGGGTCTTGTCCAC 59.964 55.0 0.0 0.0 37.08 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 126 7.754069 TGAATTCACAGACACATTTTGAAAC 57.246 32.000 3.38 0.00 30.34 2.78
183 188 8.248253 AGTGAAATTCCCGTCCATTTTATAAAC 58.752 33.333 0.00 0.00 0.00 2.01
318 323 8.964772 TGAAATTGGGAACATGTTTTGAAATTT 58.035 25.926 21.99 21.99 42.32 1.82
319 324 9.235537 GAAATTGGGAACATGTTTTGAAATTTG 57.764 29.630 24.42 0.00 42.32 2.32
358 363 9.384682 CAATTTTGGAAAACAATTAGAATGCAC 57.615 29.630 0.00 0.00 39.21 4.57
713 743 7.108841 AGAAGGTTCCTAAAACCAGAAAAAC 57.891 36.000 9.45 0.00 42.69 2.43
733 763 1.751924 CCGGACTGGAACCTTCTAGAG 59.248 57.143 0.00 0.00 42.00 2.43
735 765 2.180276 GGACTGGAACCTTCTAGAGCA 58.820 52.381 5.49 0.00 37.94 4.26
738 768 4.323868 GGACTGGAACCTTCTAGAGCATTT 60.324 45.833 5.49 0.00 37.94 2.32
739 769 5.248380 ACTGGAACCTTCTAGAGCATTTT 57.752 39.130 5.49 0.00 37.94 1.82
740 770 5.635120 ACTGGAACCTTCTAGAGCATTTTT 58.365 37.500 5.49 0.00 37.94 1.94
787 821 1.227823 TGATAATTGGGCCGGCTCG 60.228 57.895 28.56 0.00 0.00 5.03
809 843 2.693762 CCCTGGTGCTGTGCGAATG 61.694 63.158 0.00 0.00 0.00 2.67
829 863 0.593128 AACAACAATCTGTCGCAGGC 59.407 50.000 6.95 0.00 31.51 4.85
844 878 2.280457 GGCTGCGGCAGATAGGAC 60.280 66.667 32.72 13.78 40.87 3.85
953 987 0.502275 CAAAATCGCGCGCAAAAACT 59.498 45.000 32.61 7.38 0.00 2.66
961 1008 1.787057 CGCGCAAAAACTACCCCACA 61.787 55.000 8.75 0.00 0.00 4.17
968 1015 0.820482 AAACTACCCCACAACCGCAC 60.820 55.000 0.00 0.00 0.00 5.34
1079 1126 3.073735 CTCCTCTGCCACCTCGCT 61.074 66.667 0.00 0.00 0.00 4.93
1947 3226 5.070001 TGGAGTGAATGAAAGTTAACCTGG 58.930 41.667 0.88 0.00 0.00 4.45
1968 3247 4.892934 TGGGCACTGTTAATTATCCAATCC 59.107 41.667 0.00 0.00 0.00 3.01
1992 3271 9.094578 TCCTGTAAAATTCACCCAAATGATAAA 57.905 29.630 0.00 0.00 0.00 1.40
2101 3381 7.814264 AGACTGAAACTTGTCATCTGAAAAT 57.186 32.000 0.00 0.00 35.81 1.82
2149 3462 0.250467 ACGCTCAGAGTTGCCATGTT 60.250 50.000 0.00 0.00 0.00 2.71
2150 3463 0.445436 CGCTCAGAGTTGCCATGTTC 59.555 55.000 0.00 0.00 0.00 3.18
2175 3488 5.385396 GTGCCACACGTGTAATACTTATC 57.615 43.478 22.90 3.47 0.00 1.75
2177 3490 5.349270 GTGCCACACGTGTAATACTTATCAA 59.651 40.000 22.90 0.00 0.00 2.57
2225 3538 9.814899 AATTTTGTATGAATTTCACTGAACACA 57.185 25.926 0.15 0.00 0.00 3.72
2226 3539 9.985730 ATTTTGTATGAATTTCACTGAACACAT 57.014 25.926 0.15 1.36 0.00 3.21
2230 3543 7.802720 TGTATGAATTTCACTGAACACATTTCG 59.197 33.333 0.15 0.00 0.00 3.46
2235 3548 8.647143 AATTTCACTGAACACATTTCGATTTT 57.353 26.923 0.00 0.00 0.00 1.82
2268 3581 3.417069 TGACATTTCGGTGTTCCATCT 57.583 42.857 0.00 0.00 31.16 2.90
2269 3582 3.334691 TGACATTTCGGTGTTCCATCTC 58.665 45.455 0.00 0.00 31.16 2.75
2270 3583 3.244387 TGACATTTCGGTGTTCCATCTCA 60.244 43.478 0.00 0.00 31.16 3.27
2271 3584 3.941483 GACATTTCGGTGTTCCATCTCAT 59.059 43.478 0.00 0.00 31.16 2.90
2272 3585 5.097742 ACATTTCGGTGTTCCATCTCATA 57.902 39.130 0.00 0.00 0.00 2.15
2273 3586 5.496556 ACATTTCGGTGTTCCATCTCATAA 58.503 37.500 0.00 0.00 0.00 1.90
2274 3587 5.943416 ACATTTCGGTGTTCCATCTCATAAA 59.057 36.000 0.00 0.00 0.00 1.40
2275 3588 6.432783 ACATTTCGGTGTTCCATCTCATAAAA 59.567 34.615 0.00 0.00 0.00 1.52
2276 3589 6.885952 TTTCGGTGTTCCATCTCATAAAAA 57.114 33.333 0.00 0.00 0.00 1.94
2277 3590 7.461182 TTTCGGTGTTCCATCTCATAAAAAT 57.539 32.000 0.00 0.00 0.00 1.82
2278 3591 8.568676 TTTCGGTGTTCCATCTCATAAAAATA 57.431 30.769 0.00 0.00 0.00 1.40
2279 3592 8.746052 TTCGGTGTTCCATCTCATAAAAATAT 57.254 30.769 0.00 0.00 0.00 1.28
2280 3593 8.153479 TCGGTGTTCCATCTCATAAAAATATG 57.847 34.615 0.00 0.00 0.00 1.78
2281 3594 6.857964 CGGTGTTCCATCTCATAAAAATATGC 59.142 38.462 0.00 0.00 0.00 3.14
2282 3595 7.147976 GGTGTTCCATCTCATAAAAATATGCC 58.852 38.462 0.00 0.00 0.00 4.40
2283 3596 7.147976 GTGTTCCATCTCATAAAAATATGCCC 58.852 38.462 0.00 0.00 0.00 5.36
2284 3597 7.014615 GTGTTCCATCTCATAAAAATATGCCCT 59.985 37.037 0.00 0.00 0.00 5.19
2285 3598 8.224025 TGTTCCATCTCATAAAAATATGCCCTA 58.776 33.333 0.00 0.00 0.00 3.53
2286 3599 8.515414 GTTCCATCTCATAAAAATATGCCCTAC 58.485 37.037 0.00 0.00 0.00 3.18
2287 3600 7.754624 TCCATCTCATAAAAATATGCCCTACA 58.245 34.615 0.00 0.00 0.00 2.74
2288 3601 7.884877 TCCATCTCATAAAAATATGCCCTACAG 59.115 37.037 0.00 0.00 0.00 2.74
2289 3602 7.121759 CCATCTCATAAAAATATGCCCTACAGG 59.878 40.741 0.00 0.00 39.47 4.00
2367 3680 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
2368 3681 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
2369 3682 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
2370 3683 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
2371 3684 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
2372 3685 7.107542 TGCTAGAATTGTATTAACCGGAAACT 58.892 34.615 9.46 0.00 0.00 2.66
2373 3686 7.608761 TGCTAGAATTGTATTAACCGGAAACTT 59.391 33.333 9.46 0.00 0.00 2.66
2374 3687 9.101655 GCTAGAATTGTATTAACCGGAAACTTA 57.898 33.333 9.46 0.00 0.00 2.24
2387 3700 7.023197 ACCGGAAACTTAAATATATGTGTGC 57.977 36.000 9.46 0.00 0.00 4.57
2388 3701 6.600032 ACCGGAAACTTAAATATATGTGTGCA 59.400 34.615 9.46 0.00 0.00 4.57
2389 3702 7.284489 ACCGGAAACTTAAATATATGTGTGCAT 59.716 33.333 9.46 0.00 39.03 3.96
2390 3703 8.779303 CCGGAAACTTAAATATATGTGTGCATA 58.221 33.333 0.00 0.00 41.31 3.14
2391 3704 9.594038 CGGAAACTTAAATATATGTGTGCATAC 57.406 33.333 6.65 6.65 40.05 2.39
2405 3718 6.547283 TGTGTGCATACATAAACAAATACCG 58.453 36.000 12.76 0.00 39.39 4.02
2406 3719 6.149640 TGTGTGCATACATAAACAAATACCGT 59.850 34.615 12.76 0.00 39.39 4.83
2407 3720 6.467682 GTGTGCATACATAAACAAATACCGTG 59.532 38.462 8.93 0.00 39.39 4.94
2408 3721 6.149640 TGTGCATACATAAACAAATACCGTGT 59.850 34.615 0.00 0.00 0.00 4.49
2409 3722 6.685403 GTGCATACATAAACAAATACCGTGTC 59.315 38.462 0.00 0.00 0.00 3.67
2410 3723 6.183360 TGCATACATAAACAAATACCGTGTCC 60.183 38.462 0.00 0.00 0.00 4.02
2411 3724 6.721321 CATACATAAACAAATACCGTGTCCC 58.279 40.000 0.00 0.00 0.00 4.46
2412 3725 4.913784 ACATAAACAAATACCGTGTCCCT 58.086 39.130 0.00 0.00 0.00 4.20
2413 3726 6.052405 ACATAAACAAATACCGTGTCCCTA 57.948 37.500 0.00 0.00 0.00 3.53
2414 3727 6.110707 ACATAAACAAATACCGTGTCCCTAG 58.889 40.000 0.00 0.00 0.00 3.02
2415 3728 4.628963 AAACAAATACCGTGTCCCTAGT 57.371 40.909 0.00 0.00 0.00 2.57
2416 3729 3.604875 ACAAATACCGTGTCCCTAGTG 57.395 47.619 0.00 0.00 0.00 2.74
2417 3730 3.167485 ACAAATACCGTGTCCCTAGTGA 58.833 45.455 0.00 0.00 0.00 3.41
2418 3731 3.194968 ACAAATACCGTGTCCCTAGTGAG 59.805 47.826 0.00 0.00 0.00 3.51
2419 3732 2.822707 ATACCGTGTCCCTAGTGAGT 57.177 50.000 0.00 0.00 0.00 3.41
2420 3733 2.119801 TACCGTGTCCCTAGTGAGTC 57.880 55.000 0.00 0.00 0.00 3.36
2421 3734 0.404812 ACCGTGTCCCTAGTGAGTCT 59.595 55.000 0.00 0.00 0.00 3.24
2422 3735 1.096416 CCGTGTCCCTAGTGAGTCTC 58.904 60.000 0.00 0.00 0.00 3.36
2423 3736 1.340211 CCGTGTCCCTAGTGAGTCTCT 60.340 57.143 0.65 0.00 0.00 3.10
2424 3737 2.093075 CCGTGTCCCTAGTGAGTCTCTA 60.093 54.545 0.65 2.14 0.00 2.43
2425 3738 2.937799 CGTGTCCCTAGTGAGTCTCTAC 59.062 54.545 0.65 0.00 0.00 2.59
2426 3739 3.369681 CGTGTCCCTAGTGAGTCTCTACT 60.370 52.174 0.65 5.90 39.21 2.57
2427 3740 4.141981 CGTGTCCCTAGTGAGTCTCTACTA 60.142 50.000 0.65 6.68 35.56 1.82
2428 3741 5.362263 GTGTCCCTAGTGAGTCTCTACTAG 58.638 50.000 21.06 21.06 43.72 2.57
2429 3742 5.129155 GTGTCCCTAGTGAGTCTCTACTAGA 59.871 48.000 25.48 13.82 45.83 2.43
2441 3754 5.595257 TCTCTACTAGACTAGCTCGTTGA 57.405 43.478 9.52 0.00 0.00 3.18
2442 3755 6.164417 TCTCTACTAGACTAGCTCGTTGAT 57.836 41.667 9.52 0.00 0.00 2.57
2443 3756 6.218019 TCTCTACTAGACTAGCTCGTTGATC 58.782 44.000 9.52 0.00 0.00 2.92
2444 3757 5.915175 TCTACTAGACTAGCTCGTTGATCA 58.085 41.667 9.52 0.00 0.00 2.92
2445 3758 6.346896 TCTACTAGACTAGCTCGTTGATCAA 58.653 40.000 9.52 3.38 0.00 2.57
2446 3759 5.899120 ACTAGACTAGCTCGTTGATCAAA 57.101 39.130 10.35 0.00 0.00 2.69
2447 3760 5.885881 ACTAGACTAGCTCGTTGATCAAAG 58.114 41.667 10.35 12.64 0.00 2.77
2448 3761 5.648526 ACTAGACTAGCTCGTTGATCAAAGA 59.351 40.000 20.62 20.62 0.00 2.52
2449 3762 5.590530 AGACTAGCTCGTTGATCAAAGAT 57.409 39.130 21.83 12.82 0.00 2.40
2450 3763 5.347342 AGACTAGCTCGTTGATCAAAGATG 58.653 41.667 21.83 16.63 0.00 2.90
2451 3764 4.437239 ACTAGCTCGTTGATCAAAGATGG 58.563 43.478 21.83 14.18 0.00 3.51
2452 3765 3.340814 AGCTCGTTGATCAAAGATGGT 57.659 42.857 21.83 17.63 0.00 3.55
2453 3766 3.679389 AGCTCGTTGATCAAAGATGGTT 58.321 40.909 21.83 8.86 0.00 3.67
2454 3767 4.832248 AGCTCGTTGATCAAAGATGGTTA 58.168 39.130 21.83 1.90 0.00 2.85
2455 3768 5.245531 AGCTCGTTGATCAAAGATGGTTAA 58.754 37.500 21.83 1.24 0.00 2.01
2456 3769 5.352569 AGCTCGTTGATCAAAGATGGTTAAG 59.647 40.000 21.83 11.16 0.00 1.85
2457 3770 5.447818 GCTCGTTGATCAAAGATGGTTAAGG 60.448 44.000 21.83 10.54 0.00 2.69
2458 3771 5.556915 TCGTTGATCAAAGATGGTTAAGGT 58.443 37.500 18.50 0.00 0.00 3.50
2459 3772 6.001460 TCGTTGATCAAAGATGGTTAAGGTT 58.999 36.000 18.50 0.00 0.00 3.50
2460 3773 6.488683 TCGTTGATCAAAGATGGTTAAGGTTT 59.511 34.615 18.50 0.00 0.00 3.27
2461 3774 6.801862 CGTTGATCAAAGATGGTTAAGGTTTC 59.198 38.462 15.34 0.00 0.00 2.78
2462 3775 6.834168 TGATCAAAGATGGTTAAGGTTTCC 57.166 37.500 0.00 0.00 0.00 3.13
2463 3776 6.552008 TGATCAAAGATGGTTAAGGTTTCCT 58.448 36.000 0.00 0.00 33.87 3.36
2464 3777 7.695055 TGATCAAAGATGGTTAAGGTTTCCTA 58.305 34.615 0.00 0.00 31.13 2.94
2465 3778 8.167392 TGATCAAAGATGGTTAAGGTTTCCTAA 58.833 33.333 0.00 0.00 31.13 2.69
2466 3779 7.754851 TCAAAGATGGTTAAGGTTTCCTAAC 57.245 36.000 0.00 0.00 31.13 2.34
2481 3794 7.308782 GTTTCCTAACCATAGACATGAGTTG 57.691 40.000 0.00 0.00 33.67 3.16
2482 3795 6.620877 TTCCTAACCATAGACATGAGTTGT 57.379 37.500 0.00 0.00 42.79 3.32
2483 3796 6.620877 TCCTAACCATAGACATGAGTTGTT 57.379 37.500 0.00 0.00 39.18 2.83
2484 3797 7.727578 TCCTAACCATAGACATGAGTTGTTA 57.272 36.000 0.00 0.00 39.18 2.41
2485 3798 8.319057 TCCTAACCATAGACATGAGTTGTTAT 57.681 34.615 0.00 0.00 39.18 1.89
2486 3799 8.768397 TCCTAACCATAGACATGAGTTGTTATT 58.232 33.333 0.00 0.00 39.18 1.40
2487 3800 9.396022 CCTAACCATAGACATGAGTTGTTATTT 57.604 33.333 0.00 0.00 39.18 1.40
2489 3802 8.862325 AACCATAGACATGAGTTGTTATTTGA 57.138 30.769 0.00 0.00 39.18 2.69
2490 3803 9.466497 AACCATAGACATGAGTTGTTATTTGAT 57.534 29.630 0.00 0.00 39.18 2.57
2495 3808 7.974675 AGACATGAGTTGTTATTTGATAACGG 58.025 34.615 0.00 0.00 46.22 4.44
2496 3809 7.065803 AGACATGAGTTGTTATTTGATAACGGG 59.934 37.037 0.00 0.00 46.22 5.28
2497 3810 6.882140 ACATGAGTTGTTATTTGATAACGGGA 59.118 34.615 0.00 0.00 46.22 5.14
2498 3811 7.556275 ACATGAGTTGTTATTTGATAACGGGAT 59.444 33.333 0.00 0.00 46.22 3.85
2499 3812 7.548196 TGAGTTGTTATTTGATAACGGGATC 57.452 36.000 6.40 0.00 46.22 3.36
2500 3813 7.106890 TGAGTTGTTATTTGATAACGGGATCA 58.893 34.615 0.00 0.00 46.22 2.92
2501 3814 7.065324 TGAGTTGTTATTTGATAACGGGATCAC 59.935 37.037 0.00 0.00 46.22 3.06
2502 3815 6.882140 AGTTGTTATTTGATAACGGGATCACA 59.118 34.615 0.00 0.00 46.22 3.58
2503 3816 7.556275 AGTTGTTATTTGATAACGGGATCACAT 59.444 33.333 0.00 3.95 46.22 3.21
2504 3817 7.490962 TGTTATTTGATAACGGGATCACATC 57.509 36.000 0.00 0.00 46.22 3.06
2505 3818 7.051000 TGTTATTTGATAACGGGATCACATCA 58.949 34.615 0.00 0.00 46.22 3.07
2506 3819 7.226523 TGTTATTTGATAACGGGATCACATCAG 59.773 37.037 0.00 0.00 46.22 2.90
2507 3820 4.753516 TTGATAACGGGATCACATCAGT 57.246 40.909 0.00 0.00 35.56 3.41
2508 3821 5.862678 TTGATAACGGGATCACATCAGTA 57.137 39.130 0.00 0.00 35.56 2.74
2509 3822 5.453567 TGATAACGGGATCACATCAGTAG 57.546 43.478 0.00 0.00 30.75 2.57
2510 3823 4.280929 TGATAACGGGATCACATCAGTAGG 59.719 45.833 0.00 0.00 30.75 3.18
2511 3824 2.454336 ACGGGATCACATCAGTAGGA 57.546 50.000 0.00 0.00 0.00 2.94
2512 3825 2.311463 ACGGGATCACATCAGTAGGAG 58.689 52.381 0.00 0.00 0.00 3.69
2513 3826 2.091830 ACGGGATCACATCAGTAGGAGA 60.092 50.000 0.00 0.00 0.00 3.71
2514 3827 2.959030 CGGGATCACATCAGTAGGAGAA 59.041 50.000 0.00 0.00 0.00 2.87
2515 3828 3.576118 CGGGATCACATCAGTAGGAGAAT 59.424 47.826 0.00 0.00 0.00 2.40
2516 3829 4.560311 CGGGATCACATCAGTAGGAGAATG 60.560 50.000 0.00 0.00 0.00 2.67
2517 3830 4.590647 GGGATCACATCAGTAGGAGAATGA 59.409 45.833 0.00 0.00 0.00 2.57
2518 3831 5.248020 GGGATCACATCAGTAGGAGAATGAT 59.752 44.000 0.00 0.00 34.02 2.45
2523 3836 5.287674 CATCAGTAGGAGAATGATGTGGT 57.712 43.478 6.79 0.00 43.37 4.16
2524 3837 4.743057 TCAGTAGGAGAATGATGTGGTG 57.257 45.455 0.00 0.00 0.00 4.17
2525 3838 3.452264 TCAGTAGGAGAATGATGTGGTGG 59.548 47.826 0.00 0.00 0.00 4.61
2526 3839 3.452264 CAGTAGGAGAATGATGTGGTGGA 59.548 47.826 0.00 0.00 0.00 4.02
2527 3840 3.452627 AGTAGGAGAATGATGTGGTGGAC 59.547 47.826 0.00 0.00 0.00 4.02
2528 3841 2.269023 AGGAGAATGATGTGGTGGACA 58.731 47.619 0.00 0.00 39.53 4.02
2529 3842 2.644299 AGGAGAATGATGTGGTGGACAA 59.356 45.455 0.00 0.00 38.36 3.18
2530 3843 3.012518 GGAGAATGATGTGGTGGACAAG 58.987 50.000 0.00 0.00 38.36 3.16
2531 3844 3.307691 GGAGAATGATGTGGTGGACAAGA 60.308 47.826 0.00 0.00 38.36 3.02
2532 3845 3.679389 AGAATGATGTGGTGGACAAGAC 58.321 45.455 0.00 0.00 38.36 3.01
2533 3846 2.496899 ATGATGTGGTGGACAAGACC 57.503 50.000 0.00 0.00 38.36 3.85
2534 3847 0.400213 TGATGTGGTGGACAAGACCC 59.600 55.000 0.00 0.00 38.36 4.46
2535 3848 0.400213 GATGTGGTGGACAAGACCCA 59.600 55.000 0.00 0.00 38.36 4.51
2536 3849 1.004745 GATGTGGTGGACAAGACCCAT 59.995 52.381 0.00 0.00 38.36 4.00
2537 3850 0.400213 TGTGGTGGACAAGACCCATC 59.600 55.000 0.00 0.00 35.91 3.51
2538 3851 0.322546 GTGGTGGACAAGACCCATCC 60.323 60.000 0.00 0.00 33.90 3.51
2539 3852 1.078426 GGTGGACAAGACCCATCCG 60.078 63.158 0.00 0.00 35.91 4.18
2540 3853 1.677552 GTGGACAAGACCCATCCGT 59.322 57.895 0.00 0.00 35.91 4.69
2541 3854 0.036306 GTGGACAAGACCCATCCGTT 59.964 55.000 0.00 0.00 35.91 4.44
2542 3855 1.276989 GTGGACAAGACCCATCCGTTA 59.723 52.381 0.00 0.00 35.91 3.18
2543 3856 2.093128 GTGGACAAGACCCATCCGTTAT 60.093 50.000 0.00 0.00 35.91 1.89
2544 3857 2.169769 TGGACAAGACCCATCCGTTATC 59.830 50.000 0.00 0.00 35.06 1.75
2545 3858 2.434702 GGACAAGACCCATCCGTTATCT 59.565 50.000 0.00 0.00 0.00 1.98
2546 3859 3.118371 GGACAAGACCCATCCGTTATCTT 60.118 47.826 0.00 0.00 0.00 2.40
2547 3860 4.100498 GGACAAGACCCATCCGTTATCTTA 59.900 45.833 0.00 0.00 0.00 2.10
2548 3861 5.277857 ACAAGACCCATCCGTTATCTTAG 57.722 43.478 0.00 0.00 0.00 2.18
2549 3862 4.058817 CAAGACCCATCCGTTATCTTAGC 58.941 47.826 0.00 0.00 0.00 3.09
2550 3863 3.305720 AGACCCATCCGTTATCTTAGCA 58.694 45.455 0.00 0.00 0.00 3.49
2551 3864 3.904339 AGACCCATCCGTTATCTTAGCAT 59.096 43.478 0.00 0.00 0.00 3.79
2552 3865 4.348168 AGACCCATCCGTTATCTTAGCATT 59.652 41.667 0.00 0.00 0.00 3.56
2553 3866 5.048846 ACCCATCCGTTATCTTAGCATTT 57.951 39.130 0.00 0.00 0.00 2.32
2554 3867 4.821805 ACCCATCCGTTATCTTAGCATTTG 59.178 41.667 0.00 0.00 0.00 2.32
2555 3868 5.063204 CCCATCCGTTATCTTAGCATTTGA 58.937 41.667 0.00 0.00 0.00 2.69
2556 3869 5.707298 CCCATCCGTTATCTTAGCATTTGAT 59.293 40.000 0.00 0.00 0.00 2.57
2557 3870 6.128172 CCCATCCGTTATCTTAGCATTTGATC 60.128 42.308 0.00 0.00 0.00 2.92
2558 3871 6.401474 CCATCCGTTATCTTAGCATTTGATCG 60.401 42.308 0.00 0.00 0.00 3.69
2559 3872 5.597806 TCCGTTATCTTAGCATTTGATCGT 58.402 37.500 0.00 0.00 0.00 3.73
2560 3873 6.046593 TCCGTTATCTTAGCATTTGATCGTT 58.953 36.000 0.00 0.00 0.00 3.85
2561 3874 6.537301 TCCGTTATCTTAGCATTTGATCGTTT 59.463 34.615 0.00 0.00 0.00 3.60
2562 3875 7.707464 TCCGTTATCTTAGCATTTGATCGTTTA 59.293 33.333 0.00 0.00 0.00 2.01
2563 3876 8.004344 CCGTTATCTTAGCATTTGATCGTTTAG 58.996 37.037 0.00 0.00 0.00 1.85
2564 3877 8.540492 CGTTATCTTAGCATTTGATCGTTTAGT 58.460 33.333 0.00 0.00 0.00 2.24
2571 3884 7.740519 AGCATTTGATCGTTTAGTTTATTGC 57.259 32.000 0.00 0.00 0.00 3.56
2572 3885 7.538575 AGCATTTGATCGTTTAGTTTATTGCT 58.461 30.769 0.00 0.00 0.00 3.91
2573 3886 8.673711 AGCATTTGATCGTTTAGTTTATTGCTA 58.326 29.630 0.00 0.00 32.88 3.49
2574 3887 8.734030 GCATTTGATCGTTTAGTTTATTGCTAC 58.266 33.333 0.00 0.00 0.00 3.58
2575 3888 9.988350 CATTTGATCGTTTAGTTTATTGCTACT 57.012 29.630 0.00 0.00 0.00 2.57
2576 3889 9.988350 ATTTGATCGTTTAGTTTATTGCTACTG 57.012 29.630 0.00 0.00 0.00 2.74
2577 3890 7.000575 TGATCGTTTAGTTTATTGCTACTGC 57.999 36.000 0.00 0.00 40.20 4.40
2578 3891 6.816640 TGATCGTTTAGTTTATTGCTACTGCT 59.183 34.615 0.00 0.00 40.48 4.24
2579 3892 7.333423 TGATCGTTTAGTTTATTGCTACTGCTT 59.667 33.333 0.00 0.00 40.48 3.91
2580 3893 7.429636 TCGTTTAGTTTATTGCTACTGCTTT 57.570 32.000 0.00 0.00 40.48 3.51
2581 3894 7.515643 TCGTTTAGTTTATTGCTACTGCTTTC 58.484 34.615 0.00 0.00 40.48 2.62
2582 3895 7.386848 TCGTTTAGTTTATTGCTACTGCTTTCT 59.613 33.333 0.00 0.00 40.48 2.52
2583 3896 8.015658 CGTTTAGTTTATTGCTACTGCTTTCTT 58.984 33.333 0.00 0.00 40.48 2.52
2588 3901 9.014297 AGTTTATTGCTACTGCTTTCTTAATGT 57.986 29.630 0.00 0.00 40.48 2.71
2589 3902 9.278734 GTTTATTGCTACTGCTTTCTTAATGTC 57.721 33.333 0.00 0.00 40.48 3.06
2590 3903 8.560355 TTATTGCTACTGCTTTCTTAATGTCA 57.440 30.769 0.00 0.00 40.48 3.58
2591 3904 6.875948 TTGCTACTGCTTTCTTAATGTCAA 57.124 33.333 0.00 0.00 40.48 3.18
2592 3905 6.875948 TGCTACTGCTTTCTTAATGTCAAA 57.124 33.333 0.00 0.00 40.48 2.69
2593 3906 7.452880 TGCTACTGCTTTCTTAATGTCAAAT 57.547 32.000 0.00 0.00 40.48 2.32
2594 3907 8.560355 TGCTACTGCTTTCTTAATGTCAAATA 57.440 30.769 0.00 0.00 40.48 1.40
2595 3908 8.450964 TGCTACTGCTTTCTTAATGTCAAATAC 58.549 33.333 0.00 0.00 40.48 1.89
2596 3909 8.450964 GCTACTGCTTTCTTAATGTCAAATACA 58.549 33.333 0.00 0.00 38.22 2.29
2610 3923 6.726379 TGTCAAATACATATTCCTTGGACCA 58.274 36.000 0.00 0.00 31.43 4.02
2611 3924 7.353525 TGTCAAATACATATTCCTTGGACCAT 58.646 34.615 0.00 0.00 31.43 3.55
2612 3925 7.502226 TGTCAAATACATATTCCTTGGACCATC 59.498 37.037 0.00 0.00 31.43 3.51
2613 3926 7.502226 GTCAAATACATATTCCTTGGACCATCA 59.498 37.037 0.00 0.00 0.00 3.07
2614 3927 8.226810 TCAAATACATATTCCTTGGACCATCAT 58.773 33.333 0.00 0.00 0.00 2.45
2615 3928 9.519191 CAAATACATATTCCTTGGACCATCATA 57.481 33.333 0.00 0.00 0.00 2.15
2617 3930 9.911788 AATACATATTCCTTGGACCATCATATC 57.088 33.333 0.00 0.00 0.00 1.63
2618 3931 7.333779 ACATATTCCTTGGACCATCATATCA 57.666 36.000 0.00 0.00 0.00 2.15
2619 3932 7.936497 ACATATTCCTTGGACCATCATATCAT 58.064 34.615 0.00 0.00 0.00 2.45
2620 3933 7.832685 ACATATTCCTTGGACCATCATATCATG 59.167 37.037 0.00 0.00 0.00 3.07
2621 3934 4.025040 TCCTTGGACCATCATATCATGC 57.975 45.455 0.00 0.00 0.00 4.06
2622 3935 3.395273 TCCTTGGACCATCATATCATGCA 59.605 43.478 0.00 0.00 0.00 3.96
2623 3936 4.141205 TCCTTGGACCATCATATCATGCAA 60.141 41.667 0.00 0.00 0.00 4.08
2624 3937 4.022589 CCTTGGACCATCATATCATGCAAC 60.023 45.833 0.00 0.00 0.00 4.17
2625 3938 4.442401 TGGACCATCATATCATGCAACT 57.558 40.909 0.00 0.00 0.00 3.16
2626 3939 4.392047 TGGACCATCATATCATGCAACTC 58.608 43.478 0.00 0.00 0.00 3.01
2627 3940 3.755378 GGACCATCATATCATGCAACTCC 59.245 47.826 0.00 0.00 0.00 3.85
2628 3941 3.755378 GACCATCATATCATGCAACTCCC 59.245 47.826 0.00 0.00 0.00 4.30
2629 3942 2.745821 CCATCATATCATGCAACTCCCG 59.254 50.000 0.00 0.00 0.00 5.14
2630 3943 2.549064 TCATATCATGCAACTCCCGG 57.451 50.000 0.00 0.00 0.00 5.73
2631 3944 2.046292 TCATATCATGCAACTCCCGGA 58.954 47.619 0.73 0.00 0.00 5.14
2632 3945 2.639347 TCATATCATGCAACTCCCGGAT 59.361 45.455 0.73 0.00 0.00 4.18
2633 3946 3.837731 TCATATCATGCAACTCCCGGATA 59.162 43.478 0.73 0.00 0.00 2.59
2634 3947 2.550830 ATCATGCAACTCCCGGATAC 57.449 50.000 0.73 0.00 0.00 2.24
2635 3948 0.468226 TCATGCAACTCCCGGATACC 59.532 55.000 0.73 0.00 0.00 2.73
2660 3973 5.435686 AGGAATACCTTGTGTGCTATCAA 57.564 39.130 0.00 0.00 45.36 2.57
2661 3974 5.815581 AGGAATACCTTGTGTGCTATCAAA 58.184 37.500 0.00 0.00 45.36 2.69
2662 3975 5.648092 AGGAATACCTTGTGTGCTATCAAAC 59.352 40.000 0.00 0.00 45.36 2.93
2663 3976 5.447279 GGAATACCTTGTGTGCTATCAAACG 60.447 44.000 0.00 0.00 33.01 3.60
2664 3977 2.846193 ACCTTGTGTGCTATCAAACGT 58.154 42.857 0.00 0.00 33.01 3.99
2665 3978 3.211045 ACCTTGTGTGCTATCAAACGTT 58.789 40.909 0.00 0.00 33.01 3.99
2666 3979 4.382291 ACCTTGTGTGCTATCAAACGTTA 58.618 39.130 0.00 0.00 33.01 3.18
2667 3980 4.212636 ACCTTGTGTGCTATCAAACGTTAC 59.787 41.667 0.00 0.00 33.01 2.50
2668 3981 4.212425 CCTTGTGTGCTATCAAACGTTACA 59.788 41.667 0.00 0.00 33.01 2.41
2669 3982 5.277586 CCTTGTGTGCTATCAAACGTTACAA 60.278 40.000 0.00 4.27 33.01 2.41
2670 3983 5.933187 TGTGTGCTATCAAACGTTACAAT 57.067 34.783 0.00 0.00 33.01 2.71
2671 3984 5.684850 TGTGTGCTATCAAACGTTACAATG 58.315 37.500 0.00 0.00 33.01 2.82
2672 3985 5.237561 TGTGTGCTATCAAACGTTACAATGT 59.762 36.000 0.00 0.00 33.01 2.71
2673 3986 6.424207 TGTGTGCTATCAAACGTTACAATGTA 59.576 34.615 0.00 0.00 33.01 2.29
2674 3987 7.041984 TGTGTGCTATCAAACGTTACAATGTAA 60.042 33.333 0.00 1.08 33.01 2.41
2675 3988 7.267600 GTGTGCTATCAAACGTTACAATGTAAC 59.732 37.037 22.48 22.48 0.00 2.50
2676 3989 7.171848 TGTGCTATCAAACGTTACAATGTAACT 59.828 33.333 27.24 15.37 0.00 2.24
2677 3990 7.477422 GTGCTATCAAACGTTACAATGTAACTG 59.523 37.037 27.24 22.70 0.00 3.16
2678 3991 6.959311 GCTATCAAACGTTACAATGTAACTGG 59.041 38.462 27.24 18.02 0.00 4.00
2679 3992 5.676532 TCAAACGTTACAATGTAACTGGG 57.323 39.130 27.24 17.45 0.00 4.45
2680 3993 5.124645 TCAAACGTTACAATGTAACTGGGT 58.875 37.500 27.24 17.98 0.00 4.51
2681 3994 5.007823 TCAAACGTTACAATGTAACTGGGTG 59.992 40.000 27.24 20.12 0.00 4.61
2682 3995 3.404899 ACGTTACAATGTAACTGGGTGG 58.595 45.455 27.24 16.29 0.00 4.61
2683 3996 3.181452 ACGTTACAATGTAACTGGGTGGT 60.181 43.478 27.24 16.82 0.00 4.16
2684 3997 3.434299 CGTTACAATGTAACTGGGTGGTC 59.566 47.826 27.24 5.00 0.00 4.02
2685 3998 4.391155 GTTACAATGTAACTGGGTGGTCA 58.609 43.478 24.38 0.00 0.00 4.02
2686 3999 3.806949 ACAATGTAACTGGGTGGTCAT 57.193 42.857 0.00 0.00 0.00 3.06
2687 4000 4.919774 ACAATGTAACTGGGTGGTCATA 57.080 40.909 0.00 0.00 0.00 2.15
2688 4001 5.249780 ACAATGTAACTGGGTGGTCATAA 57.750 39.130 0.00 0.00 0.00 1.90
2689 4002 5.636123 ACAATGTAACTGGGTGGTCATAAA 58.364 37.500 0.00 0.00 0.00 1.40
2690 4003 5.710099 ACAATGTAACTGGGTGGTCATAAAG 59.290 40.000 0.00 0.00 0.00 1.85
2691 4004 5.772393 ATGTAACTGGGTGGTCATAAAGA 57.228 39.130 0.00 0.00 0.00 2.52
2692 4005 5.772393 TGTAACTGGGTGGTCATAAAGAT 57.228 39.130 0.00 0.00 0.00 2.40
2693 4006 5.496556 TGTAACTGGGTGGTCATAAAGATG 58.503 41.667 0.00 0.00 0.00 2.90
2694 4007 3.004752 ACTGGGTGGTCATAAAGATGC 57.995 47.619 0.00 0.00 32.62 3.91
2695 4008 2.578021 ACTGGGTGGTCATAAAGATGCT 59.422 45.455 0.00 0.00 32.62 3.79
2696 4009 3.209410 CTGGGTGGTCATAAAGATGCTC 58.791 50.000 0.00 0.00 32.62 4.26
2697 4010 2.846206 TGGGTGGTCATAAAGATGCTCT 59.154 45.455 0.00 0.00 32.62 4.09
2698 4011 4.037222 TGGGTGGTCATAAAGATGCTCTA 58.963 43.478 0.00 0.00 32.62 2.43
2699 4012 4.141711 TGGGTGGTCATAAAGATGCTCTAC 60.142 45.833 0.00 0.00 32.62 2.59
2700 4013 4.141711 GGGTGGTCATAAAGATGCTCTACA 60.142 45.833 0.00 0.00 32.62 2.74
2701 4014 5.053145 GGTGGTCATAAAGATGCTCTACAG 58.947 45.833 0.00 0.00 32.62 2.74
2702 4015 5.053145 GTGGTCATAAAGATGCTCTACAGG 58.947 45.833 0.00 0.00 32.62 4.00
2703 4016 4.716784 TGGTCATAAAGATGCTCTACAGGT 59.283 41.667 0.00 0.00 32.62 4.00
2704 4017 5.897250 TGGTCATAAAGATGCTCTACAGGTA 59.103 40.000 0.00 0.00 32.62 3.08
2705 4018 6.554982 TGGTCATAAAGATGCTCTACAGGTAT 59.445 38.462 0.00 0.00 32.62 2.73
2706 4019 7.093992 GGTCATAAAGATGCTCTACAGGTATC 58.906 42.308 0.00 0.00 32.62 2.24
2707 4020 7.039363 GGTCATAAAGATGCTCTACAGGTATCT 60.039 40.741 0.00 0.00 37.65 1.98
2708 4021 8.026607 GTCATAAAGATGCTCTACAGGTATCTC 58.973 40.741 0.00 0.00 35.65 2.75
2709 4022 5.799827 AAAGATGCTCTACAGGTATCTCC 57.200 43.478 0.00 0.00 35.65 3.71
2710 4023 3.417101 AGATGCTCTACAGGTATCTCCG 58.583 50.000 0.00 0.00 41.99 4.63
2711 4024 3.073209 AGATGCTCTACAGGTATCTCCGA 59.927 47.826 0.00 0.00 41.99 4.55
2712 4025 3.292492 TGCTCTACAGGTATCTCCGAA 57.708 47.619 0.00 0.00 41.99 4.30
2713 4026 3.215151 TGCTCTACAGGTATCTCCGAAG 58.785 50.000 0.00 0.00 41.99 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 188 3.059665 GCCTTTGAATTTTGGTTCGCAAG 60.060 43.478 0.00 0.00 0.00 4.01
222 227 7.156876 TCGCAAAATAGAAAAATGTCTGGAT 57.843 32.000 0.00 0.00 0.00 3.41
338 343 9.995003 ATTTAAGTGCATTCTAATTGTTTTCCA 57.005 25.926 0.00 0.00 0.00 3.53
713 743 1.751924 CTCTAGAAGGTTCCAGTCCGG 59.248 57.143 0.00 0.00 0.00 5.14
758 788 4.884164 GGCCCAATTATCAGTATATGGCTC 59.116 45.833 0.00 0.00 36.61 4.70
787 821 2.980233 GCACAGCACCAGGGACAC 60.980 66.667 0.00 0.00 0.00 3.67
792 826 1.236616 TTCATTCGCACAGCACCAGG 61.237 55.000 0.00 0.00 0.00 4.45
809 843 1.400242 GCCTGCGACAGATTGTTGTTC 60.400 52.381 8.20 0.00 34.26 3.18
829 863 0.249238 GACAGTCCTATCTGCCGCAG 60.249 60.000 14.62 14.62 38.84 5.18
844 878 2.361357 ACCGACGAGGAGGGACAG 60.361 66.667 8.56 0.00 45.00 3.51
953 987 4.317444 CCGTGCGGTTGTGGGGTA 62.317 66.667 1.93 0.00 0.00 3.69
1746 1793 3.963724 CCGCTTAATTAATTACAACGCCG 59.036 43.478 7.43 4.91 0.00 6.46
1947 3226 5.594317 ACAGGATTGGATAATTAACAGTGCC 59.406 40.000 0.00 0.00 0.00 5.01
1975 3254 5.189342 TGTGGCATTTATCATTTGGGTGAAT 59.811 36.000 0.00 0.00 0.00 2.57
1978 3257 4.183101 GTGTGGCATTTATCATTTGGGTG 58.817 43.478 0.00 0.00 0.00 4.61
2077 3357 7.814264 ATTTTCAGATGACAAGTTTCAGTCT 57.186 32.000 0.00 0.00 35.81 3.24
2078 3358 9.950680 TTTATTTTCAGATGACAAGTTTCAGTC 57.049 29.630 0.00 0.00 35.37 3.51
2079 3359 9.956720 CTTTATTTTCAGATGACAAGTTTCAGT 57.043 29.630 0.00 0.00 0.00 3.41
2101 3381 6.909550 ATGGCAGGTTTTATGACAACTTTA 57.090 33.333 0.00 0.00 39.65 1.85
2133 3446 1.998315 CGAGAACATGGCAACTCTGAG 59.002 52.381 2.45 2.45 37.61 3.35
2135 3448 1.462283 CACGAGAACATGGCAACTCTG 59.538 52.381 0.00 0.00 37.61 3.35
2136 3449 1.800805 CACGAGAACATGGCAACTCT 58.199 50.000 0.00 0.00 37.61 3.24
2142 3455 1.965930 TGTGGCACGAGAACATGGC 60.966 57.895 13.77 0.00 41.57 4.40
2149 3462 8.280490 ATAAGTATTACACGTGTGGCACGAGA 62.280 42.308 30.83 14.33 46.84 4.04
2150 3463 6.184242 ATAAGTATTACACGTGTGGCACGAG 61.184 44.000 30.83 20.03 46.84 4.18
2230 3543 7.515957 AATGTCAAGCAAATCATCGAAAATC 57.484 32.000 0.00 0.00 0.00 2.17
2235 3548 4.437255 CCGAAATGTCAAGCAAATCATCGA 60.437 41.667 0.00 0.00 0.00 3.59
2341 3654 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
2342 3655 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
2343 3656 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
2344 3657 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
2345 3658 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
2346 3659 7.773690 AGTTTCCGGTTAATACAATTCTAGCAT 59.226 33.333 0.00 0.00 0.00 3.79
2347 3660 7.107542 AGTTTCCGGTTAATACAATTCTAGCA 58.892 34.615 0.00 0.00 0.00 3.49
2348 3661 7.549615 AGTTTCCGGTTAATACAATTCTAGC 57.450 36.000 0.00 0.00 0.00 3.42
2361 3674 8.614346 GCACACATATATTTAAGTTTCCGGTTA 58.386 33.333 0.00 0.00 0.00 2.85
2362 3675 7.121463 TGCACACATATATTTAAGTTTCCGGTT 59.879 33.333 0.00 0.00 0.00 4.44
2363 3676 6.600032 TGCACACATATATTTAAGTTTCCGGT 59.400 34.615 0.00 0.00 0.00 5.28
2364 3677 7.022055 TGCACACATATATTTAAGTTTCCGG 57.978 36.000 0.00 0.00 0.00 5.14
2365 3678 9.594038 GTATGCACACATATATTTAAGTTTCCG 57.406 33.333 0.00 0.00 40.79 4.30
2379 3692 8.338986 CGGTATTTGTTTATGTATGCACACATA 58.661 33.333 13.76 13.76 39.77 2.29
2380 3693 7.148154 ACGGTATTTGTTTATGTATGCACACAT 60.148 33.333 16.05 16.05 41.88 3.21
2381 3694 6.149640 ACGGTATTTGTTTATGTATGCACACA 59.850 34.615 0.00 0.00 37.54 3.72
2382 3695 6.467682 CACGGTATTTGTTTATGTATGCACAC 59.532 38.462 0.00 0.00 37.54 3.82
2383 3696 6.149640 ACACGGTATTTGTTTATGTATGCACA 59.850 34.615 0.00 0.00 39.52 4.57
2384 3697 6.548171 ACACGGTATTTGTTTATGTATGCAC 58.452 36.000 0.00 0.00 0.00 4.57
2385 3698 6.183360 GGACACGGTATTTGTTTATGTATGCA 60.183 38.462 0.00 0.00 0.00 3.96
2386 3699 6.196571 GGACACGGTATTTGTTTATGTATGC 58.803 40.000 0.00 0.00 0.00 3.14
2387 3700 6.540914 AGGGACACGGTATTTGTTTATGTATG 59.459 38.462 0.00 0.00 0.00 2.39
2388 3701 6.655930 AGGGACACGGTATTTGTTTATGTAT 58.344 36.000 0.00 0.00 0.00 2.29
2389 3702 6.052405 AGGGACACGGTATTTGTTTATGTA 57.948 37.500 0.00 0.00 0.00 2.29
2390 3703 4.913784 AGGGACACGGTATTTGTTTATGT 58.086 39.130 0.00 0.00 0.00 2.29
2391 3704 6.036735 CACTAGGGACACGGTATTTGTTTATG 59.963 42.308 0.00 0.00 0.00 1.90
2392 3705 6.070653 TCACTAGGGACACGGTATTTGTTTAT 60.071 38.462 0.00 0.00 0.00 1.40
2393 3706 5.245751 TCACTAGGGACACGGTATTTGTTTA 59.754 40.000 0.00 0.00 0.00 2.01
2394 3707 4.040706 TCACTAGGGACACGGTATTTGTTT 59.959 41.667 0.00 0.00 0.00 2.83
2395 3708 3.579586 TCACTAGGGACACGGTATTTGTT 59.420 43.478 0.00 0.00 0.00 2.83
2396 3709 3.167485 TCACTAGGGACACGGTATTTGT 58.833 45.455 0.00 0.00 0.00 2.83
2397 3710 3.194968 ACTCACTAGGGACACGGTATTTG 59.805 47.826 0.00 0.00 0.00 2.32
2398 3711 3.438183 ACTCACTAGGGACACGGTATTT 58.562 45.455 0.00 0.00 0.00 1.40
2399 3712 3.022406 GACTCACTAGGGACACGGTATT 58.978 50.000 0.00 0.00 0.00 1.89
2400 3713 2.241685 AGACTCACTAGGGACACGGTAT 59.758 50.000 0.00 0.00 0.00 2.73
2401 3714 1.632409 AGACTCACTAGGGACACGGTA 59.368 52.381 0.00 0.00 0.00 4.02
2402 3715 0.404812 AGACTCACTAGGGACACGGT 59.595 55.000 0.00 0.00 0.00 4.83
2403 3716 1.096416 GAGACTCACTAGGGACACGG 58.904 60.000 0.00 0.00 0.00 4.94
2404 3717 2.116827 AGAGACTCACTAGGGACACG 57.883 55.000 5.02 0.00 0.00 4.49
2405 3718 4.224991 AGTAGAGACTCACTAGGGACAC 57.775 50.000 5.02 0.00 0.00 3.67
2406 3719 5.278873 TCTAGTAGAGACTCACTAGGGACA 58.721 45.833 25.53 13.96 42.92 4.02
2407 3720 5.874897 TCTAGTAGAGACTCACTAGGGAC 57.125 47.826 25.53 8.13 42.92 4.46
2419 3732 5.595257 TCAACGAGCTAGTCTAGTAGAGA 57.405 43.478 8.68 0.00 30.15 3.10
2420 3733 5.986741 TGATCAACGAGCTAGTCTAGTAGAG 59.013 44.000 8.68 1.49 30.15 2.43
2421 3734 5.915175 TGATCAACGAGCTAGTCTAGTAGA 58.085 41.667 8.68 0.00 30.15 2.59
2422 3735 6.606234 TTGATCAACGAGCTAGTCTAGTAG 57.394 41.667 3.38 3.39 30.15 2.57
2423 3736 6.822170 TCTTTGATCAACGAGCTAGTCTAGTA 59.178 38.462 7.89 0.00 30.15 1.82
2424 3737 5.648526 TCTTTGATCAACGAGCTAGTCTAGT 59.351 40.000 7.89 0.00 31.68 2.57
2425 3738 6.125327 TCTTTGATCAACGAGCTAGTCTAG 57.875 41.667 7.89 2.18 0.00 2.43
2426 3739 6.460261 CCATCTTTGATCAACGAGCTAGTCTA 60.460 42.308 18.24 0.00 0.00 2.59
2427 3740 5.347342 CATCTTTGATCAACGAGCTAGTCT 58.653 41.667 18.24 0.00 0.00 3.24
2428 3741 4.505922 CCATCTTTGATCAACGAGCTAGTC 59.494 45.833 18.24 0.00 0.00 2.59
2429 3742 4.081420 ACCATCTTTGATCAACGAGCTAGT 60.081 41.667 18.24 10.56 0.00 2.57
2430 3743 4.437239 ACCATCTTTGATCAACGAGCTAG 58.563 43.478 18.24 8.24 0.00 3.42
2431 3744 4.471904 ACCATCTTTGATCAACGAGCTA 57.528 40.909 18.24 0.00 0.00 3.32
2432 3745 3.340814 ACCATCTTTGATCAACGAGCT 57.659 42.857 18.24 2.03 0.00 4.09
2433 3746 5.447818 CCTTAACCATCTTTGATCAACGAGC 60.448 44.000 18.24 0.00 0.00 5.03
2434 3747 5.643777 ACCTTAACCATCTTTGATCAACGAG 59.356 40.000 18.24 10.23 0.00 4.18
2435 3748 5.556915 ACCTTAACCATCTTTGATCAACGA 58.443 37.500 16.08 16.08 0.00 3.85
2436 3749 5.880054 ACCTTAACCATCTTTGATCAACG 57.120 39.130 7.89 6.62 0.00 4.10
2437 3750 7.039714 AGGAAACCTTAACCATCTTTGATCAAC 60.040 37.037 7.89 0.00 0.00 3.18
2438 3751 7.010160 AGGAAACCTTAACCATCTTTGATCAA 58.990 34.615 3.38 3.38 0.00 2.57
2439 3752 6.552008 AGGAAACCTTAACCATCTTTGATCA 58.448 36.000 0.00 0.00 0.00 2.92
2440 3753 8.459635 GTTAGGAAACCTTAACCATCTTTGATC 58.540 37.037 0.00 0.00 34.61 2.92
2441 3754 8.349568 GTTAGGAAACCTTAACCATCTTTGAT 57.650 34.615 0.00 0.00 34.61 2.57
2442 3755 7.754851 GTTAGGAAACCTTAACCATCTTTGA 57.245 36.000 0.00 0.00 34.61 2.69
2456 3769 8.013004 ACAACTCATGTCTATGGTTAGGAAACC 61.013 40.741 0.22 0.22 46.83 3.27
2457 3770 6.879458 ACAACTCATGTCTATGGTTAGGAAAC 59.121 38.462 0.00 0.00 37.96 2.78
2458 3771 7.016153 ACAACTCATGTCTATGGTTAGGAAA 57.984 36.000 0.00 0.00 37.96 3.13
2459 3772 6.620877 ACAACTCATGTCTATGGTTAGGAA 57.379 37.500 0.00 0.00 37.96 3.36
2460 3773 6.620877 AACAACTCATGTCTATGGTTAGGA 57.379 37.500 0.00 0.00 42.99 2.94
2461 3774 8.964476 AATAACAACTCATGTCTATGGTTAGG 57.036 34.615 0.00 0.00 42.99 2.69
2463 3776 9.952030 TCAAATAACAACTCATGTCTATGGTTA 57.048 29.630 0.00 0.00 42.99 2.85
2464 3777 8.862325 TCAAATAACAACTCATGTCTATGGTT 57.138 30.769 0.00 0.00 42.99 3.67
2469 3782 9.093970 CCGTTATCAAATAACAACTCATGTCTA 57.906 33.333 9.73 0.00 42.99 2.59
2470 3783 7.065803 CCCGTTATCAAATAACAACTCATGTCT 59.934 37.037 9.73 0.00 42.99 3.41
2471 3784 7.065324 TCCCGTTATCAAATAACAACTCATGTC 59.935 37.037 9.73 0.00 42.99 3.06
2472 3785 6.882140 TCCCGTTATCAAATAACAACTCATGT 59.118 34.615 9.73 0.00 46.82 3.21
2473 3786 7.315247 TCCCGTTATCAAATAACAACTCATG 57.685 36.000 9.73 0.00 44.08 3.07
2474 3787 7.773224 TGATCCCGTTATCAAATAACAACTCAT 59.227 33.333 9.73 0.00 44.08 2.90
2475 3788 7.065324 GTGATCCCGTTATCAAATAACAACTCA 59.935 37.037 9.73 4.80 44.08 3.41
2476 3789 7.065324 TGTGATCCCGTTATCAAATAACAACTC 59.935 37.037 9.73 2.87 44.08 3.01
2477 3790 6.882140 TGTGATCCCGTTATCAAATAACAACT 59.118 34.615 9.73 0.00 44.08 3.16
2478 3791 7.079182 TGTGATCCCGTTATCAAATAACAAC 57.921 36.000 9.73 0.00 44.08 3.32
2479 3792 7.554476 TGATGTGATCCCGTTATCAAATAACAA 59.446 33.333 9.73 0.00 44.08 2.83
2480 3793 7.051000 TGATGTGATCCCGTTATCAAATAACA 58.949 34.615 9.73 0.00 44.08 2.41
2481 3794 7.226720 ACTGATGTGATCCCGTTATCAAATAAC 59.773 37.037 1.06 0.68 34.56 1.89
2482 3795 7.279615 ACTGATGTGATCCCGTTATCAAATAA 58.720 34.615 1.06 0.00 34.56 1.40
2483 3796 6.826668 ACTGATGTGATCCCGTTATCAAATA 58.173 36.000 1.06 0.00 34.56 1.40
2484 3797 5.684704 ACTGATGTGATCCCGTTATCAAAT 58.315 37.500 0.70 0.70 36.67 2.32
2485 3798 5.097742 ACTGATGTGATCCCGTTATCAAA 57.902 39.130 0.00 0.00 37.61 2.69
2486 3799 4.753516 ACTGATGTGATCCCGTTATCAA 57.246 40.909 0.00 0.00 37.61 2.57
2487 3800 4.280929 CCTACTGATGTGATCCCGTTATCA 59.719 45.833 0.00 0.00 33.48 2.15
2488 3801 4.523173 TCCTACTGATGTGATCCCGTTATC 59.477 45.833 0.00 0.00 0.00 1.75
2489 3802 4.480115 TCCTACTGATGTGATCCCGTTAT 58.520 43.478 0.00 0.00 0.00 1.89
2490 3803 3.889538 CTCCTACTGATGTGATCCCGTTA 59.110 47.826 0.00 0.00 0.00 3.18
2491 3804 2.695666 CTCCTACTGATGTGATCCCGTT 59.304 50.000 0.00 0.00 0.00 4.44
2492 3805 2.091830 TCTCCTACTGATGTGATCCCGT 60.092 50.000 0.00 0.00 0.00 5.28
2493 3806 2.587522 TCTCCTACTGATGTGATCCCG 58.412 52.381 0.00 0.00 0.00 5.14
2494 3807 4.590647 TCATTCTCCTACTGATGTGATCCC 59.409 45.833 0.00 0.00 0.00 3.85
2495 3808 5.798125 TCATTCTCCTACTGATGTGATCC 57.202 43.478 0.00 0.00 0.00 3.36
2502 3815 4.102210 CCACCACATCATTCTCCTACTGAT 59.898 45.833 0.00 0.00 0.00 2.90
2503 3816 3.452264 CCACCACATCATTCTCCTACTGA 59.548 47.826 0.00 0.00 0.00 3.41
2504 3817 3.452264 TCCACCACATCATTCTCCTACTG 59.548 47.826 0.00 0.00 0.00 2.74
2505 3818 3.452627 GTCCACCACATCATTCTCCTACT 59.547 47.826 0.00 0.00 0.00 2.57
2506 3819 3.197766 TGTCCACCACATCATTCTCCTAC 59.802 47.826 0.00 0.00 0.00 3.18
2507 3820 3.449918 TGTCCACCACATCATTCTCCTA 58.550 45.455 0.00 0.00 0.00 2.94
2508 3821 2.269023 TGTCCACCACATCATTCTCCT 58.731 47.619 0.00 0.00 0.00 3.69
2509 3822 2.787473 TGTCCACCACATCATTCTCC 57.213 50.000 0.00 0.00 0.00 3.71
2510 3823 3.686726 GTCTTGTCCACCACATCATTCTC 59.313 47.826 0.00 0.00 33.90 2.87
2511 3824 3.560025 GGTCTTGTCCACCACATCATTCT 60.560 47.826 0.00 0.00 33.90 2.40
2512 3825 2.749621 GGTCTTGTCCACCACATCATTC 59.250 50.000 0.00 0.00 33.90 2.67
2513 3826 2.555227 GGGTCTTGTCCACCACATCATT 60.555 50.000 0.00 0.00 35.35 2.57
2514 3827 1.004745 GGGTCTTGTCCACCACATCAT 59.995 52.381 0.00 0.00 35.35 2.45
2515 3828 0.400213 GGGTCTTGTCCACCACATCA 59.600 55.000 0.00 0.00 35.35 3.07
2516 3829 0.400213 TGGGTCTTGTCCACCACATC 59.600 55.000 0.00 0.00 35.35 3.06
2517 3830 1.004745 GATGGGTCTTGTCCACCACAT 59.995 52.381 0.00 0.00 37.08 3.21
2518 3831 0.400213 GATGGGTCTTGTCCACCACA 59.600 55.000 0.00 0.00 37.08 4.17
2519 3832 0.322546 GGATGGGTCTTGTCCACCAC 60.323 60.000 0.00 0.00 37.08 4.16
2520 3833 1.836999 CGGATGGGTCTTGTCCACCA 61.837 60.000 0.00 0.00 37.08 4.17
2521 3834 1.078426 CGGATGGGTCTTGTCCACC 60.078 63.158 0.00 0.00 37.08 4.61
2522 3835 0.036306 AACGGATGGGTCTTGTCCAC 59.964 55.000 0.00 0.00 37.08 4.02
2523 3836 1.646912 TAACGGATGGGTCTTGTCCA 58.353 50.000 0.00 0.00 38.82 4.02
2524 3837 2.434702 AGATAACGGATGGGTCTTGTCC 59.565 50.000 0.00 0.00 0.00 4.02
2525 3838 3.821421 AGATAACGGATGGGTCTTGTC 57.179 47.619 0.00 0.00 0.00 3.18
2526 3839 4.443034 GCTAAGATAACGGATGGGTCTTGT 60.443 45.833 0.00 0.00 32.02 3.16
2527 3840 4.058817 GCTAAGATAACGGATGGGTCTTG 58.941 47.826 0.00 0.00 32.02 3.02
2528 3841 3.709653 TGCTAAGATAACGGATGGGTCTT 59.290 43.478 0.00 0.00 33.96 3.01
2529 3842 3.305720 TGCTAAGATAACGGATGGGTCT 58.694 45.455 0.00 0.00 0.00 3.85
2530 3843 3.746045 TGCTAAGATAACGGATGGGTC 57.254 47.619 0.00 0.00 0.00 4.46
2531 3844 4.706842 AATGCTAAGATAACGGATGGGT 57.293 40.909 0.00 0.00 0.00 4.51
2532 3845 5.063204 TCAAATGCTAAGATAACGGATGGG 58.937 41.667 0.00 0.00 0.00 4.00
2533 3846 6.401474 CGATCAAATGCTAAGATAACGGATGG 60.401 42.308 0.00 0.00 0.00 3.51
2534 3847 6.146184 ACGATCAAATGCTAAGATAACGGATG 59.854 38.462 0.00 0.00 0.00 3.51
2535 3848 6.223852 ACGATCAAATGCTAAGATAACGGAT 58.776 36.000 0.00 0.00 0.00 4.18
2536 3849 5.597806 ACGATCAAATGCTAAGATAACGGA 58.402 37.500 0.00 0.00 0.00 4.69
2537 3850 5.907197 ACGATCAAATGCTAAGATAACGG 57.093 39.130 0.00 0.00 0.00 4.44
2538 3851 8.540492 ACTAAACGATCAAATGCTAAGATAACG 58.460 33.333 0.00 0.00 0.00 3.18
2545 3858 9.284594 GCAATAAACTAAACGATCAAATGCTAA 57.715 29.630 0.00 0.00 0.00 3.09
2546 3859 8.673711 AGCAATAAACTAAACGATCAAATGCTA 58.326 29.630 0.00 0.00 36.25 3.49
2547 3860 7.538575 AGCAATAAACTAAACGATCAAATGCT 58.461 30.769 0.00 0.00 33.45 3.79
2548 3861 7.740519 AGCAATAAACTAAACGATCAAATGC 57.259 32.000 0.00 0.00 0.00 3.56
2549 3862 9.988350 AGTAGCAATAAACTAAACGATCAAATG 57.012 29.630 0.00 0.00 0.00 2.32
2550 3863 9.988350 CAGTAGCAATAAACTAAACGATCAAAT 57.012 29.630 0.00 0.00 0.00 2.32
2551 3864 7.960738 GCAGTAGCAATAAACTAAACGATCAAA 59.039 33.333 0.00 0.00 41.58 2.69
2552 3865 7.333423 AGCAGTAGCAATAAACTAAACGATCAA 59.667 33.333 0.00 0.00 45.49 2.57
2553 3866 6.816640 AGCAGTAGCAATAAACTAAACGATCA 59.183 34.615 0.00 0.00 45.49 2.92
2554 3867 7.235430 AGCAGTAGCAATAAACTAAACGATC 57.765 36.000 0.00 0.00 45.49 3.69
2555 3868 7.611213 AAGCAGTAGCAATAAACTAAACGAT 57.389 32.000 0.00 0.00 45.49 3.73
2556 3869 7.386848 AGAAAGCAGTAGCAATAAACTAAACGA 59.613 33.333 0.00 0.00 45.49 3.85
2557 3870 7.519002 AGAAAGCAGTAGCAATAAACTAAACG 58.481 34.615 0.00 0.00 45.49 3.60
2562 3875 9.014297 ACATTAAGAAAGCAGTAGCAATAAACT 57.986 29.630 0.00 0.00 45.49 2.66
2563 3876 9.278734 GACATTAAGAAAGCAGTAGCAATAAAC 57.721 33.333 0.00 0.00 45.49 2.01
2564 3877 9.008965 TGACATTAAGAAAGCAGTAGCAATAAA 57.991 29.630 0.00 0.00 45.49 1.40
2565 3878 8.560355 TGACATTAAGAAAGCAGTAGCAATAA 57.440 30.769 0.00 0.00 45.49 1.40
2566 3879 8.560355 TTGACATTAAGAAAGCAGTAGCAATA 57.440 30.769 0.00 0.00 45.49 1.90
2567 3880 7.452880 TTGACATTAAGAAAGCAGTAGCAAT 57.547 32.000 0.00 0.00 45.49 3.56
2568 3881 6.875948 TTGACATTAAGAAAGCAGTAGCAA 57.124 33.333 0.00 0.00 45.49 3.91
2569 3882 6.875948 TTTGACATTAAGAAAGCAGTAGCA 57.124 33.333 0.00 0.00 45.49 3.49
2570 3883 8.450964 TGTATTTGACATTAAGAAAGCAGTAGC 58.549 33.333 0.00 0.00 35.11 3.58
2586 3899 6.726379 TGGTCCAAGGAATATGTATTTGACA 58.274 36.000 0.00 0.00 43.97 3.58
2587 3900 7.502226 TGATGGTCCAAGGAATATGTATTTGAC 59.498 37.037 0.00 0.00 0.00 3.18
2588 3901 7.581814 TGATGGTCCAAGGAATATGTATTTGA 58.418 34.615 0.00 0.00 0.00 2.69
2589 3902 7.822161 TGATGGTCCAAGGAATATGTATTTG 57.178 36.000 0.00 0.00 0.00 2.32
2591 3904 9.911788 GATATGATGGTCCAAGGAATATGTATT 57.088 33.333 0.00 0.00 0.00 1.89
2592 3905 9.061252 TGATATGATGGTCCAAGGAATATGTAT 57.939 33.333 0.00 0.00 0.00 2.29
2593 3906 8.448068 TGATATGATGGTCCAAGGAATATGTA 57.552 34.615 0.00 0.00 0.00 2.29
2594 3907 7.333779 TGATATGATGGTCCAAGGAATATGT 57.666 36.000 0.00 0.00 0.00 2.29
2595 3908 7.201794 GCATGATATGATGGTCCAAGGAATATG 60.202 40.741 4.25 0.00 0.00 1.78
2596 3909 6.832384 GCATGATATGATGGTCCAAGGAATAT 59.168 38.462 4.25 0.00 0.00 1.28
2597 3910 6.182627 GCATGATATGATGGTCCAAGGAATA 58.817 40.000 4.25 0.00 0.00 1.75
2598 3911 5.014858 GCATGATATGATGGTCCAAGGAAT 58.985 41.667 4.25 0.00 0.00 3.01
2599 3912 4.141205 TGCATGATATGATGGTCCAAGGAA 60.141 41.667 4.25 0.00 0.00 3.36
2600 3913 3.395273 TGCATGATATGATGGTCCAAGGA 59.605 43.478 4.25 0.00 0.00 3.36
2601 3914 3.758425 TGCATGATATGATGGTCCAAGG 58.242 45.455 4.25 0.00 0.00 3.61
2602 3915 4.825634 AGTTGCATGATATGATGGTCCAAG 59.174 41.667 4.25 0.00 0.00 3.61
2603 3916 4.795469 AGTTGCATGATATGATGGTCCAA 58.205 39.130 4.25 0.00 0.00 3.53
2604 3917 4.392047 GAGTTGCATGATATGATGGTCCA 58.608 43.478 4.25 0.00 0.00 4.02
2605 3918 3.755378 GGAGTTGCATGATATGATGGTCC 59.245 47.826 4.25 0.00 0.00 4.46
2606 3919 3.755378 GGGAGTTGCATGATATGATGGTC 59.245 47.826 4.25 0.00 0.00 4.02
2607 3920 3.759581 GGGAGTTGCATGATATGATGGT 58.240 45.455 4.25 0.00 0.00 3.55
2608 3921 2.745821 CGGGAGTTGCATGATATGATGG 59.254 50.000 4.25 0.00 0.00 3.51
2609 3922 2.745821 CCGGGAGTTGCATGATATGATG 59.254 50.000 0.00 0.00 0.00 3.07
2610 3923 2.639347 TCCGGGAGTTGCATGATATGAT 59.361 45.455 0.00 0.00 0.00 2.45
2611 3924 2.046292 TCCGGGAGTTGCATGATATGA 58.954 47.619 0.00 0.00 0.00 2.15
2612 3925 2.549064 TCCGGGAGTTGCATGATATG 57.451 50.000 0.00 0.00 0.00 1.78
2613 3926 3.055094 GGTATCCGGGAGTTGCATGATAT 60.055 47.826 0.00 0.00 0.00 1.63
2614 3927 2.301870 GGTATCCGGGAGTTGCATGATA 59.698 50.000 0.00 0.00 0.00 2.15
2615 3928 1.072331 GGTATCCGGGAGTTGCATGAT 59.928 52.381 0.00 0.00 0.00 2.45
2616 3929 0.468226 GGTATCCGGGAGTTGCATGA 59.532 55.000 0.00 0.00 0.00 3.07
2617 3930 0.880278 CGGTATCCGGGAGTTGCATG 60.880 60.000 0.00 0.00 44.15 4.06
2618 3931 1.445942 CGGTATCCGGGAGTTGCAT 59.554 57.895 0.00 0.00 44.15 3.96
2619 3932 2.897207 CGGTATCCGGGAGTTGCA 59.103 61.111 0.00 0.00 44.15 4.08
2625 3938 5.361737 AGGTATTCCTTCGGTATCCGGGA 62.362 52.174 0.00 0.00 41.61 5.14
2626 3939 3.084867 AGGTATTCCTTCGGTATCCGGG 61.085 54.545 0.00 3.10 41.61 5.73
2627 3940 2.245582 AGGTATTCCTTCGGTATCCGG 58.754 52.381 8.32 0.00 41.61 5.14
2639 3952 5.447279 CGTTTGATAGCACACAAGGTATTCC 60.447 44.000 0.00 0.00 32.74 3.01
2640 3953 5.121768 ACGTTTGATAGCACACAAGGTATTC 59.878 40.000 0.00 0.00 32.74 1.75
2641 3954 5.001232 ACGTTTGATAGCACACAAGGTATT 58.999 37.500 0.00 0.00 32.74 1.89
2642 3955 4.575885 ACGTTTGATAGCACACAAGGTAT 58.424 39.130 0.00 0.00 35.09 2.73
2643 3956 3.997762 ACGTTTGATAGCACACAAGGTA 58.002 40.909 0.00 0.00 0.00 3.08
2644 3957 2.846193 ACGTTTGATAGCACACAAGGT 58.154 42.857 0.00 0.00 0.00 3.50
2645 3958 3.896648 AACGTTTGATAGCACACAAGG 57.103 42.857 0.00 0.00 0.00 3.61
2646 3959 5.337219 TGTAACGTTTGATAGCACACAAG 57.663 39.130 5.91 0.00 0.00 3.16
2647 3960 5.736486 TTGTAACGTTTGATAGCACACAA 57.264 34.783 5.91 4.67 0.00 3.33
2648 3961 5.237561 ACATTGTAACGTTTGATAGCACACA 59.762 36.000 5.91 0.00 0.00 3.72
2649 3962 5.685841 ACATTGTAACGTTTGATAGCACAC 58.314 37.500 5.91 0.00 0.00 3.82
2650 3963 5.933187 ACATTGTAACGTTTGATAGCACA 57.067 34.783 5.91 0.00 0.00 4.57
2651 3964 7.477422 CAGTTACATTGTAACGTTTGATAGCAC 59.523 37.037 26.02 0.00 33.00 4.40
2652 3965 7.360522 CCAGTTACATTGTAACGTTTGATAGCA 60.361 37.037 26.02 0.00 33.00 3.49
2653 3966 6.959311 CCAGTTACATTGTAACGTTTGATAGC 59.041 38.462 26.02 6.30 33.00 2.97
2654 3967 7.118680 ACCCAGTTACATTGTAACGTTTGATAG 59.881 37.037 26.02 16.06 33.00 2.08
2655 3968 6.935771 ACCCAGTTACATTGTAACGTTTGATA 59.064 34.615 26.02 0.00 33.00 2.15
2656 3969 5.766174 ACCCAGTTACATTGTAACGTTTGAT 59.234 36.000 26.02 11.11 33.00 2.57
2657 3970 5.007823 CACCCAGTTACATTGTAACGTTTGA 59.992 40.000 26.02 0.00 33.00 2.69
2658 3971 5.209240 CACCCAGTTACATTGTAACGTTTG 58.791 41.667 26.02 20.41 33.00 2.93
2659 3972 4.276431 CCACCCAGTTACATTGTAACGTTT 59.724 41.667 26.02 12.30 33.00 3.60
2660 3973 3.816523 CCACCCAGTTACATTGTAACGTT 59.183 43.478 26.02 5.88 33.00 3.99
2661 3974 3.181452 ACCACCCAGTTACATTGTAACGT 60.181 43.478 26.02 18.32 33.00 3.99
2662 3975 3.404899 ACCACCCAGTTACATTGTAACG 58.595 45.455 26.02 21.22 33.00 3.18
2663 3976 4.391155 TGACCACCCAGTTACATTGTAAC 58.609 43.478 25.46 25.46 0.00 2.50
2664 3977 4.708576 TGACCACCCAGTTACATTGTAA 57.291 40.909 5.14 5.14 0.00 2.41
2665 3978 4.919774 ATGACCACCCAGTTACATTGTA 57.080 40.909 0.00 0.00 0.00 2.41
2666 3979 3.806949 ATGACCACCCAGTTACATTGT 57.193 42.857 0.00 0.00 0.00 2.71
2667 3980 5.943416 TCTTTATGACCACCCAGTTACATTG 59.057 40.000 0.00 0.00 0.00 2.82
2668 3981 6.134535 TCTTTATGACCACCCAGTTACATT 57.865 37.500 0.00 0.00 0.00 2.71
2669 3982 5.772393 TCTTTATGACCACCCAGTTACAT 57.228 39.130 0.00 0.00 0.00 2.29
2670 3983 5.496556 CATCTTTATGACCACCCAGTTACA 58.503 41.667 0.00 0.00 34.84 2.41
2671 3984 4.335594 GCATCTTTATGACCACCCAGTTAC 59.664 45.833 0.00 0.00 34.84 2.50
2672 3985 4.227300 AGCATCTTTATGACCACCCAGTTA 59.773 41.667 0.00 0.00 34.84 2.24
2673 3986 3.010584 AGCATCTTTATGACCACCCAGTT 59.989 43.478 0.00 0.00 34.84 3.16
2674 3987 2.578021 AGCATCTTTATGACCACCCAGT 59.422 45.455 0.00 0.00 34.84 4.00
2675 3988 3.209410 GAGCATCTTTATGACCACCCAG 58.791 50.000 0.00 0.00 34.84 4.45
2676 3989 3.281727 GAGCATCTTTATGACCACCCA 57.718 47.619 0.00 0.00 34.84 4.51
2683 3996 7.177568 GGAGATACCTGTAGAGCATCTTTATGA 59.822 40.741 4.41 0.00 40.44 2.15
2684 3997 7.319646 GGAGATACCTGTAGAGCATCTTTATG 58.680 42.308 4.41 0.00 40.44 1.90
2685 3998 6.151985 CGGAGATACCTGTAGAGCATCTTTAT 59.848 42.308 4.41 0.00 41.07 1.40
2686 3999 5.473846 CGGAGATACCTGTAGAGCATCTTTA 59.526 44.000 4.41 0.00 41.07 1.85
2687 4000 4.279671 CGGAGATACCTGTAGAGCATCTTT 59.720 45.833 4.41 0.00 41.07 2.52
2688 4001 3.823873 CGGAGATACCTGTAGAGCATCTT 59.176 47.826 4.41 0.00 41.07 2.40
2689 4002 3.073209 TCGGAGATACCTGTAGAGCATCT 59.927 47.826 2.90 2.90 42.72 2.90
2690 4003 3.413327 TCGGAGATACCTGTAGAGCATC 58.587 50.000 0.00 0.00 36.31 3.91
2691 4004 3.510531 TCGGAGATACCTGTAGAGCAT 57.489 47.619 0.00 0.00 36.31 3.79
2692 4005 3.215151 CTTCGGAGATACCTGTAGAGCA 58.785 50.000 0.00 0.00 35.04 4.26
2693 4006 2.554893 CCTTCGGAGATACCTGTAGAGC 59.445 54.545 0.00 0.00 35.04 4.09
2694 4007 3.566322 CACCTTCGGAGATACCTGTAGAG 59.434 52.174 0.00 0.00 35.04 2.43
2695 4008 3.053842 ACACCTTCGGAGATACCTGTAGA 60.054 47.826 0.00 0.00 35.04 2.59
2696 4009 3.288964 ACACCTTCGGAGATACCTGTAG 58.711 50.000 0.00 0.00 35.04 2.74
2697 4010 3.053842 AGACACCTTCGGAGATACCTGTA 60.054 47.826 0.00 0.00 35.04 2.74
2698 4011 2.100989 GACACCTTCGGAGATACCTGT 58.899 52.381 0.00 0.00 35.04 4.00
2699 4012 2.099921 CAGACACCTTCGGAGATACCTG 59.900 54.545 0.00 0.00 35.04 4.00
2700 4013 2.291670 ACAGACACCTTCGGAGATACCT 60.292 50.000 0.00 0.00 35.04 3.08
2701 4014 2.100989 ACAGACACCTTCGGAGATACC 58.899 52.381 0.00 0.00 35.04 2.73
2702 4015 3.192844 TCAACAGACACCTTCGGAGATAC 59.807 47.826 0.00 0.00 35.04 2.24
2703 4016 3.427573 TCAACAGACACCTTCGGAGATA 58.572 45.455 0.00 0.00 35.04 1.98
2704 4017 2.232452 CTCAACAGACACCTTCGGAGAT 59.768 50.000 0.00 0.00 35.04 2.75
2705 4018 1.613925 CTCAACAGACACCTTCGGAGA 59.386 52.381 0.00 0.00 0.00 3.71
2706 4019 1.341531 ACTCAACAGACACCTTCGGAG 59.658 52.381 0.00 0.00 0.00 4.63
2707 4020 1.410004 ACTCAACAGACACCTTCGGA 58.590 50.000 0.00 0.00 0.00 4.55
2708 4021 1.867233 CAACTCAACAGACACCTTCGG 59.133 52.381 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.