>input_sequence_70499
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------ATGACCATGCTCGCTTCCCTCTTCTCCCCCTCCCCTCTCCTCACCACCGCCGCCTCCACCTCCTCCTCTGCCAC
CTCGCTGCCAGCGCCACACGCTGTGAGGCTCCCGGCTCCCAGGCCGCTCACCGCCACACTGGCCGCGGCAGCCGCGGCCG
GCCTCCTCCTGCTAACCCCCGCAGCGCCGTCGCACGCGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCG
GCCAACTACGGCGGGTACGGCGGCAACGCGAACAAGAGGGACGCGGCGGAGTACGTGTACGACGTGCCCGAGGGGTGGAA
AGAGCGTCTGGTGTCAAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGAGTTCTTCAACCCGCGCAAGCGCTCCGAGC
GGGAGTACCTCACCTTCCTCTCCGGGTTCCGCAAGCTGGCCCCCGTCGGCGCCGTGCTCGACAACCTCGCCCTCTCCGAC
GTCGGGCTGCAGGACCAGATCTCGTCGGCGGACGACGTGACGTCGGCGGAGCGGAAGGACGCGGACGGGCAGGTGTACTA
CGAGTACGAGGTGGCCGGCGCCGGCGCGCACAGCCTCATCTCCGTGACGTGCGCCCGGAACAAGCTGTACGCGCACTTCG
TCACGGCGCCCAACCCCGAGTGGGGGCGCGACGAGGCCGTCCTCCGCCGCCTGCACCAGTCCTTCAAGACCGTCGACTTC
AGCGGCCAAGATTAA-----------------------------------------------------------------
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>chr7D_1_TraesCS7D01G243900
TTCTGAAGAATAAGACCAAATTTAATAAATGAAACATTTTTTGAAGTTACGAACAAAATTTGAAAAATGCTAAAAAAA-T
TAAAATTCCCTGAACAATTTTTGAATTCACAGACACATTTTGAAACCATGA--TTTT-TTTATTTGTGAACATATTTGGA
AAGTGAAATTCCCGTCCATTTTATAAACTTGCGAACCAAAATTCAAAGGCGAACCTTTTTTTAGATATCCAGACATTTTT
CTATTTTGCGAATAAATTTTGAAAATATGAACATTTTTTTATTTGGGAACTAATTTTGAAATTGGGAACATGTTTTGAAA
TTTGTAAACATTTTATCAATTTTGGAAAACAATTAGAATGCAC-------TTAAATTTAAAAAATTTAACATTTTCAAAT
TTTGGAACATTTTTTCAAAGTAGTGAACAAATTTTAAAATTCTATTTTTTGAATTTGTGAATATAAT-TCAAAACATGAT
AATTTTTAATAATGAACAAAATTTAAAAAAT-----CATTTTTCATATTTCTGAAGATTTTTTGAAAAATAAAA------
-----TAAAATGAGGAATGCAAAGGGAAA-AAACAAAGAAAATAGAAAACGAAAATGGAAAGAAAAAAAGGAAAAATATT
AGAAAAGAAAATAAACAGGAAAAAACCAAAAAGAAACAGAAAATGACATAAACCGGTTCATGTCCTGAAAGTAAGGCTAG
AAGGTTCCTAAAACCAGAAAAACCGGACTGGAACCTTCTAGAGCATTTTTATAACCGTCCGGTACTGGAGCC----ATAT
ACTGATAATTGGGCCGGCTCGTGTCCCTGGTGCTGTGCGAATGAACAACAATCTGTCGCAGGCTGCGGCAGATAGGACTG
TCCCTCCTCGTCGGTGGAATGCCCATGTCGTCGTCGCACCGGATAAGCCTCGCCGATCTCCTATCCTCTCGGCGAGACAA
AACCACACAAAATCGCGCGCAAAAACTA-CCC------------CACAACCGCACGGCGTACGCGCGCACGCCGTCGAGG
TCCACCATGACCATGCTCGCTTCCCTCTTCTCCCCCTCCCCTCTCCTCACCACCGCCGCCTCCACCTCCTCCTCTGCCAC
CTCGCTGCCAGCGCCACACGCTGTGAGGCTCCCGGCTCCCAGGCCGCTCACCGCCACACTGGCCGCGGCAGCCGCGGCCG
GCCTCCTCCTGCTAACCCCCGCAGCGCCGTCGCACGCGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCG
GCCAACTACGGCGGGTACGGCGGCAACGCGAACAAGAGGGACGCGGCGGAGTACGTGTACGACGTGCCCGAGGGGTGGAA
AGAGCGTCTGGTGTCAAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGAGTTCTTCAACCCGCGCAAGCGCTCCGAGC
GGGAGTACCTCACCTTCCTCTCCGGGTTCCGCAAGCTGGCCCCCGTCGGCGCCGTGCTCGACAACCTCGCCCTCTCCGAC
GTCGGGCTGCAGGACCAGATCTCGTCGGCGGACGACGTGACGTCGGCGGAGCGGAAGGACGCGGACGGGCAGGTGTACTA
CGAGTACGAGGTGGCCGGCGCCGGCGCGCACAGCCTCATCTCCGTGACGTGCGCCCGGAACAAGCTGTACGCGCACTTCG
TCACGGCGCCCAACCCCGAGTGGGGGCGCGACGAGGCCGTCCTCCGCCGCCTGCACCAGTCCTTCAAGACCGTCGACTTC
AGCGGCCAAGATTAACATGCATGCTGCGCGCGCGGCGTTGTAATTAATTAAGCGGTTTTGTATAGGCGCTATCATCGAGG
AAGAGGTAATTGATCTGGATGATTATTCAGAACCGGCATACAGTATCTTGATCTGTAAATTGCTTTCTTCCTCTGTGTAA
GACCAGCAGTGCTGCTGTAGACTGTAGTGTTAGCAACGAAACGGTTCAAATGGAGTGAATGAAAGTTA------------
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--------------------ACCTGGGCACTGTTAATTATCCAATCCTGTAAAATTCACCCAAATGATAAATGCCACACG
TGTGGCACGAAGCAGTCTGATCCTGAGTTTTTTACAACTAAAGTTGTCATCCAAAATAAAAAG-CAAACAAAAAAAAGAC
TGAAACTTGTCATCTGAAAATAAAGTTGTCATA---------------------------------AAACCTGCCATAAA
AAACGCTCAGAGTTGCCATGTTCTCGTGCCACACGTGTAATACTTATCAAGGTCCTTAATTTAACATTACTAATTTTGTA
TGAATTTCACTGAACACATTTCGATTTTCGATGATTTGCTTGACATTTCGGTGTTCCATCTCATAAAAATATGCCCTACA
GGCAATAATAAAATAGTTATTATTATATTTCCTTAATCATGATAAAGGTTTATTATTCATGCTAGAATTGTATTAACCGG
AAACTTAAATATATGTGTGCATACATAAACAAATACCGTGTCCCTAGTGAGTCTCTACTAGACTAGCTCGTTGATCAAAG
ATGGTTAAGGTTTCCTAACCATAGACATGAGTTGTTATTTGATAACGGGATCACATCAGTAGGAGAATGATGTGGTGGAC
AAGACCCATCCGTTATCTTAGCATTTGATCGTTTAGTTTATTGCTACTGCTTTCTTAATGTCAAATACATATTCCTTGGA
CCATCATATCATGCAACTCCCGGATACCGAAGGAATACCTTGTGTGCTATCAAACGTTACAATGTAACTGGGTGGTCATA
AAGATGCTCTACAGGTATCTCCGAAGGTGTCTGTTGAGTTG
>chr7A_1
TTTTGAAGAACAAGACCAAATTTAATAAATCAAACATTTTTTGAAGTTACGAACAAATTTTGATAA-TTCTAACATTTTT
TAATATTCCCTGAAAGTTTTTTGAATTCACAAACACATTTTGAAAACATGATTTTTT-TTTATTTGTGAACATGTTTGGA
ACGTGAAATTCCCGTCCATTTTATAAATTTGCGACTCAAATTTCAAAGGTGATCCTTTTTTGGGATTTCCAGACATTTTT
ATATTTTGCGAATAAATTTTGAAAACATGAACATATTTTTTAT------------------TTGGGAACATGTTTTGAAA
TTCCTAACCATTTTATCAATTCGGGAAAACAAAT-AAATGCAAAGATTTTTTTGAATTGAAGTTTTAAACATTTTTTAAT
CTTGGAACA-TTTTGCAAAGTAGTGAACAAATTTTAAAATTCTATTTTTTGGATTTGTGAATATAATTTCAAAACATGAT
CTTTTT-AAAAATGAACAAAATTGTAAACAATTGAACATTTTTCATATTTCTGAAGATTTTTTGAAAAATAAAAATAAAG
TAAAATAAAATGAAGAAAGCAAAGGGAAA-AAACAAAGAAAATAAAAAACGAAAATGAAAAGAAAAAAAGGA--------
-------------------AAAAAACCAAAAAGAAACAGAAAATGACATAAAC-GGTTCATGTCCTGAAAGTAAGGCTAG
AAGGTTCCTAAAACCATAAAAAACGGACTGGAACCTTCTAGAACGTCGCCATAACCGTCCGGTACTGTAGCCCGTTATAT
ACTGATAATTGGGCCGGCTCAGGTCGCTCGCGCTATGCGAATCAACGACGATCTGTCGCAGGATGCGGCAGATAGGATTG
TCCCTCCTCGTCGGTGGAATGCCCATGTCGTCGTCGCACCGGATAAGCCTCGCCGATCTCCTATCCGCTCAGCGAGACAA
AACCACACAAAATCGCGCGCAAAAACCACCCC------------CACCACCGCAGGGCGTACGCGCGCACGTCGTCGAGG
TCCACCATGACCATGCTCGCTTCCCTCTTCTCCCCCTCTCCTCTCCTCACCACCGCCGCCTCCACCTCCTCGTCTGCCAC
CTCGCAGCCAGCGCCACAGACTGTGAGGCTCCCGGCTCCCAGGCCGCTCACCGCCACACTGGCCGCGGCAGCCGCGGCCG
GTCTCCTCCTGCTGACCCCCGCGGCGCCGTCGCACGCGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCG
GCCAACTACGGCGGGTACGGCGGCAACGCGAACAAGAGGGACGCGGCGGAGTACGTGTACGACGTGCCCGAGGGGTGGAA
GGAGCGACTGGTGTCAAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGAGTTCTTCAACCCGCGCAAGCGCTCCGAGC
GGGAGTACCTCACCTTCCTCTCCGGGTTCCGCAAGCTGGCCCCCGTCGGCGCCGTGCTCGACAACCTCGCCCTCTCTGAC
GTCGGGCTGCAGGACCAGATCTCGTCGGCGGACGACGTGACATCGGCGGAGCGGAAGGACGCGGACGGGCAGGTGTACTA
CGAGTACGAGGTGGCTGGCGCCGGCGCGCACAGCCTCATCTCCGTGACGTGCGCCCGGAACAAGCTGTACGCGCACTTCG
TCACGGCGCCCAACCCCGAGTGGGGGCGCGACGAGGCCGTCCTCCGCCGCCTGCACCAGTCCTTCAAGACCGTCGACTTC
AGCGGCCAAGATTAACATGCATGCTGCGCGCGTGGCGTTGTAATTAATTAAGCGGTTTTGTATAGGCGCTATCATCGAGG
AAGAGGTAATTGATCTGGATGATTATTCAGAACCGGCATACAGTATCTTGATCTGTAAATTGCTTTCTTCCTCTGTGTAA
GACCAGCAGTGCTGCTGTAGACTGTAGTGTTAGCAACGAAACGGTTCAAATGGAGTGAATGAAAGTTA------------
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--------------------ACCTGCGCACTGTTAATTATCCAATCATGTAAATTT-ACCC----------TGTCACACG
TGTGGCATGAAACAATCCGGCTTTGAGCTTTTTACAACTAAAATTGTCATCCGAAAATAAAAAACAAACAAAAAAA---C
TGAAAGTTGCCATCCAAAAGGAAAGTTGTCAT------------------------------------------------
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>chr7B_4
---TGAAGAACAAGACCAAAATTAATAAATAAACATTTTTTTGAAGTTACGAACAAATTTTGAAAA-TGCTAAAAAAA-T
TAAAATTTCCTGAACAATTTTTGAATTCACAGACACATTTTGAAAACATGATTTTTTTTTTATTTGTGAATATATTTGGA
AAGTAAAATTCCCGTCCATTTTATAAATTTGCGAACCAATATTCAAAGGCGGACCTTTTTTTAGATTTCCAGAAATTTTT
CTATTTTGCGAATAAATTTTGAAAACATGAACATTTTTT-ATTTGGGAAGTAATTTTGAAATTGGGAACGTGTTTTGAAA
TTCCTAAACATTTTATCAATTTGGGAAAACAATTAAAATGCAAATCTTTTTTAAATTTGAAATTTTAAACATTTTTGGAT
TTTAGAACATTTTTTCAAAGTAGCTATCAAAATTTAAAATTCTATTTTTTCAATTTGTGAATATAATTTCAAAACATGAT
CTTTTTTAAAAATGAACACAATTTTTAAAAAT-GAACATTTTTCATATTTCTGAAGATTTTTTAAAAA-TAAAAATAAAA
TAAAATAAAATGAGGAAAGCAAAGGGAAATAAACAAAGAAAT--AAAAACGAAAATGGAAAGAAAAAGA--AAAAATGTT
AGAAAAGAAA--AAACAGGAAAAAACTAAAAAGAAACAGAAAATGACATAAACCGGTTCATGTCCTCAAAGTAAGGCTAG
AAGGTTCCTAAAACCAGAAAAAACGGACTGGAACCTTCTAGAACGTTCGCATAACCGTCTGGTATTGTAGCCCGTTATAT
ACTGATAATTGGGCCGGCTCATGTCGCTGGTGCTGTGCGAATCAATAACAATCTGTTGCCGGTTGCAAA------GATTG
TCCCTACTCGTCGGTGGAATGCCCATGTCGTCGTCGCACCGGATAAGCCTCGCCGATCTCCTATCCTCTCGGCGAGACAA
AACCACACAAAATCGCGCGCAAAAACCACCCCCACCACCGCGGACACCACCGCAGGGCGTAAGCGCGCACGCCGTCGAGG
TCCACCATGACCATGCTCGCTTCCCTCTTCTCCCCTTCCCCTCTCCTCACCACCGCCGCCTCCACCTCCTCCTCTGCCAC
CTCGCAGCCAGCGCCACAGACTGTGAGGCTCCCGGCTCCCAGGCCGCTCACCGCCACACTGGCCGCGGCAGCCGCGGCCG
GCCTCCTCCTGCTAACCCCCGCAGCGCCGTCGCACGCGGAGGGGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCG
GCCAACTACGGCGGGTACGGCGGCAACGCGAACAAGAGGGACGCGGCGGAGTACGTGTACGACGTGCCCGAGGGGTGGAA
AGAGCGTCTGGTGTCAAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGAGTTCTTCAACCCGCGCAAGCGCTCCGAGC
GGGAGTACCTCACCTTCCTCTCCGGGTTCCGCAAGCTGGCCCCCGTCGGCGCCGTGCTGGACAACCTCGCACTCTCCGAC
GTCGGGCTGCAGGACCAGATCTCGTCGGCGGACGACGTGACGTCGGCGGAGCGGAAGGACGCGGACGGGCAGGTGTACTA
CGAGTACGAGGTGGCCGGCGCCGGCGCGCACAGCCTCATCTCTGTGACGTGCGCCCGGAACAAGCTCTACGCGCACTTCG
TCACGGCGCCCAACCCCGAGTGGGGGCGCGACGAGGCCGTCCTCCGCCGCCTGCACCAGTCCTTCAAGACCGTCGACTTC
AGCGGCCAAGATTAACATGCATGCTGCGCG-------------TTACTTAAGCGGTTTTGTATAGGCGTTATCATCGAAG
AAGAGGCAATTGATCTGGATGATTATTCAGAACCGGCATACAGTATCTTGATCTGTAAATTGCTTTCTTCCTATGT----
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>chr7B_1741
CGCGCGCA------------------------------------------------------------------------
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--------------------------------TGGTGCTGTAATTAATTAAGCGATTTTGTATAGGTGCTATCATCGAAG
AAGAGGCAATTGATCTGGATGATTATTCAGAACCGGCATACATTATCTTGATCTGTAAATTTCTTTCTTTCTCTGTGTAA
GACCAGCAGTGCTGCTGGAGACTATAGTGTTAGCAACAAAATGGTTCAAATGGAGTGAATGAAAGTTAACCTGCGTGGGA
GACTTCTTTTGGGCCGGTAAGGAGAAGAGTAATGGAGGGCAATGCCTAGTTGCATGGGAGACGGTTTGTAGGCCGACGAG
CTTTGGTGGTTTGGGAGTGAAGAACTTGACGTTGCAAGCTCTCGCACTCCGGGTGCGTTGGGAATGGCTAAGGAGAACAT
ACCCGAACAGGCCATGGCAAGGCCTCCATGTGATGGTTGACGAGCAAGCGCGCGCAGTCTTTGATATCCTGGTCAAGATC
ACCGTTAGAGAGGGATTGAAAGTCCTTTTTGAAGAGATTGTTGGATACACGGAGTTGCGATTAAGGACATTGCCCCGCTG
CTTCCTCAACTTGTTAGCACAAGAGATAAAAATAGGAGAACGGTGCGTGAGGCGCTTGTTGACAACGCCTGGGCGAATGA
TGTCCATGGAGAGCTCTCGTTGACGTGTCATATGCAAGTTTACTTGCTGACCCAAGCCATTAGCACGGTGGTAAGAAACA
TGGAGGAGCCGGATCTCTTCGAGTGGCCCTGCGATGCATCGTGCAAATACACTGCCAACTCCACTTATAAGAGACTTTGC
ATCGGATTCACCCGTTCCCCGATGGCCCACTGTATTTGGCGAACCTGGGCACCGCTCAAGTGCAAGATCTTCATGTGGTT
GGCCTGTCAATTCCGTCTATGGACCTCCGATCGTCGAGCCAGGCATGGTCTTCAAGATGCCCCATCCCCTTTCTACACTT
GCCTTCAGGAGGAGGACAATGCGGATCACATCCTCGCACAATGCGTTTTAGCTCGGGAGGTGTGGCATTCCTGTTTTAGT
GTGTGGAGCATCATCATACACACTCCAGGCACAAACGTATTATTCTTGCAATGGTGGCTCGACCAAAGAAGTTGATTCAT
GGGAAGAACCAAGAGAAGCATGGACTCAATCATTATTCTCATTGCATGGGCACTTTGGAAGCAGCGCAACGCACGTGTCT
TCAACAACAGGCCCAGACAGAGAACTTCACTGCAGCTTAGAGATGAGATTCAAAATGAGATTGCAGAGTGGAAGAAGGCC
GGTCTTGGTGGTGTCGGAGCTTTAGATCCTTTCACGAGAGAGCAGTCTTCGTTCACTAGGGTGTAGGTGTGTTGGGTGTC
CCCCGGACGATTTTTTCGCATATCGTTTGGGCTCTTGTACATATATTCTGCCTTCTATAAAAATACGATATGCCATTGGC
ATACTCTCAAAAAAAAGTTAACCTGCGCACTGTTAATTATCCAATCATGTAAATTT-ACCCAAATGATAAGTACCACACG
TGTGGCACGAAGCAATCCAGCCCTGAGTATTTTACAACTAAAGTTGTTATCCGAAAAAAAAAC---------AAAG---T
TGAAACTTGCCATGTGAAAACAAAGTTGTTGTGCCTGACAACTAAAGTTACAATCCTCGTGTCACTAAACTTGCCATAAA
AAACGTTTGGAGTTTCCATGTGATCGTGCCACACGTGTGACACTTATTAGGGTCCTTAATTTAACGTTACTAATTTTGTA
TGAATTTCACTTAACACGGTTCAATTTCCGATGATTTGCTTGACATTTCGGTGTTCCATC--------------------
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>SNPs
----------S-------------------S--------------------------S--------S-------------
---------------------------------------------S----------------------------------
---------------------------S--------------------------------------S-------------
-------------------------S-----------------------S------------------------------
--SS------------------S------------S------S---------------S---SS--S--------SS---
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SS-------S--------------S-----S-------------------------------------------------
-----------------S--------------------------S--------------------------------S--
----------SS--------------------------------------------------------------------
----------------------S-------------------S-S--SSS-----------------S------------
--------------------S----S----------------S-------------------S--------------S--
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--------------------------S--------------------S------S-------------------------
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-----S------------SS------------------------------------------------------------
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-------------------------S--------------------S------S--S-------------S---------
--------------S--S-SS-------------------------------S---S-----S-------------SSS-
---------S----------S-----------S-------------------------------------S---------
-----S-SS-----S------SS---------------S-S------S-S---------------S--------------
-----------S-----SS---S----S--------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_987
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-------CAAAATCGCGCGCAAAAACT-----------------------------------------------------
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>reverse_3835
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--------------------------------------------------------------------------GTGGAC
AAGACCCATCCGTT------------------------------------------------------------------
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