Multiple sequence alignment - TraesCS7D01G231900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G231900 chr7D 100.000 2309 0 0 1 2309 193205426 193203118 0.000000e+00 4265.0
1 TraesCS7D01G231900 chr7B 90.089 2351 124 61 38 2309 156633659 156631339 0.000000e+00 2950.0
2 TraesCS7D01G231900 chr7A 87.197 1031 75 31 529 1532 202725934 202724934 0.000000e+00 1120.0
3 TraesCS7D01G231900 chr7A 93.842 747 31 12 1571 2309 202724937 202724198 0.000000e+00 1110.0
4 TraesCS7D01G231900 chr7A 87.365 554 40 17 2 536 202726594 202726052 1.960000e-170 608.0
5 TraesCS7D01G231900 chr7A 83.265 245 18 10 2 229 202733651 202733413 1.080000e-48 204.0
6 TraesCS7D01G231900 chr7A 100.000 30 0 0 1357 1386 183649610 183649639 3.200000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G231900 chr7D 193203118 193205426 2308 True 4265 4265 100.000 1 2309 1 chr7D.!!$R1 2308
1 TraesCS7D01G231900 chr7B 156631339 156633659 2320 True 2950 2950 90.089 38 2309 1 chr7B.!!$R1 2271
2 TraesCS7D01G231900 chr7A 202724198 202726594 2396 True 946 1120 89.468 2 2309 3 chr7A.!!$R2 2307

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 1088 0.322456 TCCTTGCACTACACCCATGC 60.322 55.0 0.0 0.0 39.88 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2226 2506 1.077501 GGTGGCAAGGCAGCTATCA 60.078 57.895 17.11 0.0 34.17 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.162793 GAAATATGAATTCGTTTAGTGCATGAG 57.837 33.333 5.29 0.00 0.00 2.90
51 52 5.928976 AGGATGCTAACATGTTAGTGCATA 58.071 37.500 34.74 21.41 43.28 3.14
59 60 7.169982 GCTAACATGTTAGTGCATAAGGAGTAG 59.830 40.741 34.74 15.65 43.28 2.57
61 62 7.655521 ACATGTTAGTGCATAAGGAGTAGTA 57.344 36.000 0.00 0.00 0.00 1.82
62 63 7.490000 ACATGTTAGTGCATAAGGAGTAGTAC 58.510 38.462 0.00 0.00 0.00 2.73
65 66 8.130671 TGTTAGTGCATAAGGAGTAGTACTTT 57.869 34.615 0.00 0.00 0.00 2.66
66 67 8.033038 TGTTAGTGCATAAGGAGTAGTACTTTG 58.967 37.037 0.00 0.96 0.00 2.77
67 68 5.420409 AGTGCATAAGGAGTAGTACTTTGC 58.580 41.667 16.59 16.59 34.43 3.68
80 81 3.741344 AGTACTTTGCAAAGCTGACGTAG 59.259 43.478 33.72 12.66 39.63 3.51
113 115 9.274206 GTAAGTTGAGAAATGAGGTAGAACTTT 57.726 33.333 0.00 0.00 34.91 2.66
130 132 4.439253 ACTTTAGGAGCTGAACAAAGGT 57.561 40.909 0.00 0.00 31.89 3.50
164 181 3.368427 CCCGTTAAGCATCTCTGAGTCAA 60.368 47.826 4.32 0.00 0.00 3.18
172 189 7.992754 AAGCATCTCTGAGTCAACTTTTTAT 57.007 32.000 4.32 0.00 0.00 1.40
174 191 6.939163 AGCATCTCTGAGTCAACTTTTTATGT 59.061 34.615 4.32 0.00 0.00 2.29
189 206 7.574607 ACTTTTTATGTCTTAGGATACCCCAG 58.425 38.462 0.00 0.00 37.41 4.45
237 254 2.154567 AGAATGCCAATCATGCAGGT 57.845 45.000 0.00 0.00 42.92 4.00
269 286 3.010584 ACCCTGCCAATCAGACAAATACT 59.989 43.478 0.00 0.00 45.72 2.12
369 386 5.987953 ACATCTGTCACTCATCAATAATCCG 59.012 40.000 0.00 0.00 0.00 4.18
481 504 1.228675 AGCAGTGCTTTGGAAGGGG 60.229 57.895 13.14 0.00 33.89 4.79
539 688 7.781548 TCAACTGTTAACAAGTACTCCTTTC 57.218 36.000 10.03 0.00 0.00 2.62
562 711 6.712276 TCTCCTTTAGTTTTTCCTCTCATCC 58.288 40.000 0.00 0.00 0.00 3.51
596 749 2.076207 TCCTTCAATCCATGGCCATG 57.924 50.000 34.82 34.82 38.51 3.66
620 773 2.429383 TCCAAAGAGGGAGGTTCTTCCT 60.429 50.000 0.00 0.00 43.32 3.36
639 792 1.337071 CTGGCATGCTCCACAATCATC 59.663 52.381 18.92 0.00 31.74 2.92
754 908 4.494091 TCTCCTCCATTCTTTCCATGTC 57.506 45.455 0.00 0.00 0.00 3.06
821 978 1.643310 TTTTCCCCTGGCCTTCATTG 58.357 50.000 3.32 0.00 0.00 2.82
837 994 5.825151 CCTTCATTGTTTTCCTATCCTCTCC 59.175 44.000 0.00 0.00 0.00 3.71
838 995 6.353429 CCTTCATTGTTTTCCTATCCTCTCCT 60.353 42.308 0.00 0.00 0.00 3.69
839 996 6.240549 TCATTGTTTTCCTATCCTCTCCTC 57.759 41.667 0.00 0.00 0.00 3.71
840 997 5.966935 TCATTGTTTTCCTATCCTCTCCTCT 59.033 40.000 0.00 0.00 0.00 3.69
841 998 6.445139 TCATTGTTTTCCTATCCTCTCCTCTT 59.555 38.462 0.00 0.00 0.00 2.85
868 1030 6.382282 TCTCCAATGGCACTATCCTCTATATG 59.618 42.308 0.00 0.00 0.00 1.78
917 1079 2.949963 GCCCATTCCATTCCTTGCACTA 60.950 50.000 0.00 0.00 0.00 2.74
925 1087 2.198827 TTCCTTGCACTACACCCATG 57.801 50.000 0.00 0.00 0.00 3.66
926 1088 0.322456 TCCTTGCACTACACCCATGC 60.322 55.000 0.00 0.00 39.88 4.06
938 1100 2.599032 CCATGCATGCTCCCCTCA 59.401 61.111 21.69 0.00 0.00 3.86
1051 1239 2.203728 ACTACCAGGTGTCCGGCA 60.204 61.111 0.76 0.00 0.00 5.69
1143 1331 1.302832 CGCCCTGTCCTGCTTCTTT 60.303 57.895 0.00 0.00 0.00 2.52
1203 1391 4.476410 TACGACTGCGCGAGGCTG 62.476 66.667 12.10 6.05 45.25 4.85
1443 1649 9.499479 AACATCATAATAATTCGCAGAATCTCT 57.501 29.630 4.63 0.00 45.90 3.10
1453 1659 8.553459 AATTCGCAGAATCTCTTTTTCTCTTA 57.447 30.769 4.63 0.00 45.90 2.10
1491 1698 9.927081 ATTTTGTAGATGTATTCCTTTCATCCT 57.073 29.630 0.00 0.00 38.79 3.24
1521 1728 5.246656 ACATGAAAGATTCCTGCCATCAAAA 59.753 36.000 0.00 0.00 0.00 2.44
1522 1729 5.138125 TGAAAGATTCCTGCCATCAAAAC 57.862 39.130 0.00 0.00 0.00 2.43
1523 1730 4.588106 TGAAAGATTCCTGCCATCAAAACA 59.412 37.500 0.00 0.00 0.00 2.83
1524 1731 5.070180 TGAAAGATTCCTGCCATCAAAACAA 59.930 36.000 0.00 0.00 0.00 2.83
1525 1732 5.549742 AAGATTCCTGCCATCAAAACAAA 57.450 34.783 0.00 0.00 0.00 2.83
1526 1733 5.750352 AGATTCCTGCCATCAAAACAAAT 57.250 34.783 0.00 0.00 0.00 2.32
1527 1734 5.484715 AGATTCCTGCCATCAAAACAAATG 58.515 37.500 0.00 0.00 0.00 2.32
1528 1735 4.952071 TTCCTGCCATCAAAACAAATGA 57.048 36.364 0.00 0.00 0.00 2.57
1529 1736 4.524316 TCCTGCCATCAAAACAAATGAG 57.476 40.909 0.00 0.00 0.00 2.90
1530 1737 3.258872 TCCTGCCATCAAAACAAATGAGG 59.741 43.478 0.00 0.00 0.00 3.86
1531 1738 3.007182 CCTGCCATCAAAACAAATGAGGT 59.993 43.478 0.00 0.00 0.00 3.85
1532 1739 3.991773 CTGCCATCAAAACAAATGAGGTG 59.008 43.478 0.00 0.00 0.00 4.00
1533 1740 2.738314 GCCATCAAAACAAATGAGGTGC 59.262 45.455 0.00 0.00 0.00 5.01
1534 1741 3.328505 CCATCAAAACAAATGAGGTGCC 58.671 45.455 0.00 0.00 0.00 5.01
1535 1742 3.007182 CCATCAAAACAAATGAGGTGCCT 59.993 43.478 0.00 0.00 0.00 4.75
1536 1743 3.731652 TCAAAACAAATGAGGTGCCTG 57.268 42.857 0.00 0.00 0.00 4.85
1537 1744 3.295093 TCAAAACAAATGAGGTGCCTGA 58.705 40.909 0.00 0.00 0.00 3.86
1538 1745 3.703556 TCAAAACAAATGAGGTGCCTGAA 59.296 39.130 0.00 0.00 0.00 3.02
1539 1746 4.161189 TCAAAACAAATGAGGTGCCTGAAA 59.839 37.500 0.00 0.00 0.00 2.69
1540 1747 4.961438 AAACAAATGAGGTGCCTGAAAT 57.039 36.364 0.00 0.00 0.00 2.17
1541 1748 4.525912 AACAAATGAGGTGCCTGAAATC 57.474 40.909 0.00 0.00 0.00 2.17
1542 1749 2.827921 ACAAATGAGGTGCCTGAAATCC 59.172 45.455 0.00 0.00 0.00 3.01
1543 1750 3.094572 CAAATGAGGTGCCTGAAATCCT 58.905 45.455 0.00 0.00 0.00 3.24
1544 1751 4.263905 ACAAATGAGGTGCCTGAAATCCTA 60.264 41.667 0.00 0.00 0.00 2.94
1545 1752 3.567478 ATGAGGTGCCTGAAATCCTAC 57.433 47.619 0.00 0.00 0.00 3.18
1546 1753 1.559682 TGAGGTGCCTGAAATCCTACC 59.440 52.381 0.00 0.00 0.00 3.18
1547 1754 1.840635 GAGGTGCCTGAAATCCTACCT 59.159 52.381 0.00 0.00 40.98 3.08
1548 1755 2.239907 GAGGTGCCTGAAATCCTACCTT 59.760 50.000 0.00 0.00 38.57 3.50
1549 1756 2.239907 AGGTGCCTGAAATCCTACCTTC 59.760 50.000 0.00 0.00 35.09 3.46
1550 1757 2.239907 GGTGCCTGAAATCCTACCTTCT 59.760 50.000 0.00 0.00 0.00 2.85
1551 1758 3.308473 GGTGCCTGAAATCCTACCTTCTT 60.308 47.826 0.00 0.00 0.00 2.52
1552 1759 4.080526 GGTGCCTGAAATCCTACCTTCTTA 60.081 45.833 0.00 0.00 0.00 2.10
1553 1760 5.497474 GTGCCTGAAATCCTACCTTCTTAA 58.503 41.667 0.00 0.00 0.00 1.85
1554 1761 6.122964 GTGCCTGAAATCCTACCTTCTTAAT 58.877 40.000 0.00 0.00 0.00 1.40
1555 1762 6.603599 GTGCCTGAAATCCTACCTTCTTAATT 59.396 38.462 0.00 0.00 0.00 1.40
1556 1763 7.122799 GTGCCTGAAATCCTACCTTCTTAATTT 59.877 37.037 0.00 0.00 0.00 1.82
1557 1764 8.333235 TGCCTGAAATCCTACCTTCTTAATTTA 58.667 33.333 0.00 0.00 0.00 1.40
1558 1765 9.355916 GCCTGAAATCCTACCTTCTTAATTTAT 57.644 33.333 0.00 0.00 0.00 1.40
1602 1854 8.124823 TCTTTTCTTATCGCAGCAAAGAATATG 58.875 33.333 12.83 8.19 37.64 1.78
1653 1908 5.652014 TCATGAGGTTGTCTTCAAACACTTT 59.348 36.000 0.00 0.00 43.08 2.66
1661 1916 8.299570 GGTTGTCTTCAAACACTTTCATATCAT 58.700 33.333 0.00 0.00 40.61 2.45
1662 1917 9.121517 GTTGTCTTCAAACACTTTCATATCATG 57.878 33.333 0.00 0.00 35.20 3.07
1663 1918 8.620116 TGTCTTCAAACACTTTCATATCATGA 57.380 30.769 0.00 0.00 37.55 3.07
1717 1972 2.264813 GCGAAATGCAGTGCAATCATT 58.735 42.857 23.90 14.52 43.62 2.57
1796 2054 0.809636 GTGGCAAAACGCAAAAGCCT 60.810 50.000 0.00 0.00 45.42 4.58
1864 2123 1.747444 AGAGCAAAAGAGAAGGGGGA 58.253 50.000 0.00 0.00 0.00 4.81
1904 2184 4.023193 ACACACACAGCCTTAAATTGCTAC 60.023 41.667 0.00 0.00 35.69 3.58
2200 2480 2.357569 GCAGAGATCCCAACCATCCTTT 60.358 50.000 0.00 0.00 0.00 3.11
2226 2506 2.186903 GATGTCCGGTGCCGTGAT 59.813 61.111 9.90 0.00 37.81 3.06
2256 2536 1.059584 TTGCCACCTCTGGGTCTTCA 61.060 55.000 0.00 0.00 45.41 3.02
2267 2547 1.301293 GGTCTTCAGCCTTCCCCAG 59.699 63.158 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.894409 TGCACTAAACGAATTCATATTTCTTG 57.106 30.769 6.22 5.19 0.00 3.02
29 30 6.293626 CCTTATGCACTAACATGTTAGCATCC 60.294 42.308 32.21 23.06 44.74 3.51
51 52 4.757149 CAGCTTTGCAAAGTACTACTCCTT 59.243 41.667 33.47 9.53 38.28 3.36
59 60 3.739300 TCTACGTCAGCTTTGCAAAGTAC 59.261 43.478 33.47 26.75 38.28 2.73
61 62 2.802816 CTCTACGTCAGCTTTGCAAAGT 59.197 45.455 33.47 20.67 38.28 2.66
62 63 2.412065 GCTCTACGTCAGCTTTGCAAAG 60.412 50.000 30.70 30.70 39.03 2.77
65 66 0.033366 TGCTCTACGTCAGCTTTGCA 59.967 50.000 17.69 6.59 37.79 4.08
66 67 0.440371 GTGCTCTACGTCAGCTTTGC 59.560 55.000 17.69 4.36 37.79 3.68
67 68 1.723542 CAGTGCTCTACGTCAGCTTTG 59.276 52.381 17.69 12.57 37.79 2.77
80 81 5.121454 CCTCATTTCTCAACTTACAGTGCTC 59.879 44.000 0.00 0.00 0.00 4.26
113 115 2.972713 ACTCACCTTTGTTCAGCTCCTA 59.027 45.455 0.00 0.00 0.00 2.94
130 132 2.872842 GCTTAACGGGCAAGGTTACTCA 60.873 50.000 0.00 0.00 30.10 3.41
164 181 7.404980 TCTGGGGTATCCTAAGACATAAAAAGT 59.595 37.037 0.00 0.00 36.20 2.66
172 189 2.359994 GGGTCTGGGGTATCCTAAGACA 60.360 54.545 22.22 0.27 42.86 3.41
174 191 1.222298 GGGGTCTGGGGTATCCTAAGA 59.778 57.143 0.00 0.00 36.20 2.10
237 254 2.443390 GGCAGGGTAGGGACGCTA 60.443 66.667 0.00 0.00 46.50 4.26
269 286 0.251916 CCTGGAAGACGGCATGGTAA 59.748 55.000 0.00 0.00 34.07 2.85
481 504 2.610374 TGTAAACGTTGCCACTCTTGAC 59.390 45.455 0.00 0.00 0.00 3.18
539 688 6.716284 AGGATGAGAGGAAAAACTAAAGGAG 58.284 40.000 0.00 0.00 0.00 3.69
562 711 7.775093 TGGATTGAAGGATAAAGGAACATGTAG 59.225 37.037 0.00 0.00 0.00 2.74
596 749 1.283321 AGAACCTCCCTCTTTGGATGC 59.717 52.381 0.00 0.00 38.35 3.91
620 773 1.341187 TGATGATTGTGGAGCATGCCA 60.341 47.619 15.66 2.78 33.76 4.92
639 792 6.874134 TGTGATGCTGATCTGATCATCTAATG 59.126 38.462 19.84 9.01 38.85 1.90
754 908 1.664151 GGAAGATTTAAGTGGACGCCG 59.336 52.381 0.00 0.00 0.00 6.46
807 964 1.276138 GGAAAACAATGAAGGCCAGGG 59.724 52.381 5.01 0.00 0.00 4.45
817 974 6.245890 AGAGGAGAGGATAGGAAAACAATG 57.754 41.667 0.00 0.00 0.00 2.82
821 978 5.897250 AGAGAAGAGGAGAGGATAGGAAAAC 59.103 44.000 0.00 0.00 0.00 2.43
837 994 4.502950 GGATAGTGCCATTGGAGAGAAGAG 60.503 50.000 6.95 0.00 0.00 2.85
838 995 3.389329 GGATAGTGCCATTGGAGAGAAGA 59.611 47.826 6.95 0.00 0.00 2.87
839 996 3.390639 AGGATAGTGCCATTGGAGAGAAG 59.609 47.826 6.95 0.00 0.00 2.85
840 997 3.387962 AGGATAGTGCCATTGGAGAGAA 58.612 45.455 6.95 0.00 0.00 2.87
841 998 2.968574 GAGGATAGTGCCATTGGAGAGA 59.031 50.000 6.95 0.00 0.00 3.10
868 1030 4.844522 GCGTCACTTCCTTTCGAAATTTAC 59.155 41.667 11.70 2.91 0.00 2.01
917 1079 2.043652 GGGAGCATGCATGGGTGT 60.044 61.111 27.34 0.00 0.00 4.16
925 1087 4.512914 GGGGTGAGGGGAGCATGC 62.513 72.222 10.51 10.51 0.00 4.06
926 1088 4.181010 CGGGGTGAGGGGAGCATG 62.181 72.222 0.00 0.00 0.00 4.06
927 1089 4.741239 ACGGGGTGAGGGGAGCAT 62.741 66.667 0.00 0.00 0.00 3.79
938 1100 1.637724 TTGTTGGACTTGGACGGGGT 61.638 55.000 0.00 0.00 0.00 4.95
972 1142 1.006102 GAGATACGGTGGCGATGGG 60.006 63.158 0.00 0.00 0.00 4.00
976 1152 0.454600 GAACAGAGATACGGTGGCGA 59.545 55.000 0.00 0.00 0.00 5.54
1396 1585 9.894783 GATGTTACAATCGTGTATAGTATGAGT 57.105 33.333 0.00 0.00 39.96 3.41
1397 1586 9.893305 TGATGTTACAATCGTGTATAGTATGAG 57.107 33.333 0.00 0.00 39.96 2.90
1491 1698 7.953005 TGGCAGGAATCTTTCATGTTAATTA 57.047 32.000 4.15 0.00 42.97 1.40
1502 1709 5.549742 TTGTTTTGATGGCAGGAATCTTT 57.450 34.783 0.00 0.00 0.00 2.52
1505 1712 5.481105 TCATTTGTTTTGATGGCAGGAATC 58.519 37.500 0.00 0.00 0.00 2.52
1506 1713 5.484715 CTCATTTGTTTTGATGGCAGGAAT 58.515 37.500 0.00 0.00 0.00 3.01
1521 1728 2.827921 GGATTTCAGGCACCTCATTTGT 59.172 45.455 0.00 0.00 0.00 2.83
1522 1729 3.094572 AGGATTTCAGGCACCTCATTTG 58.905 45.455 0.00 0.00 0.00 2.32
1523 1730 3.463048 AGGATTTCAGGCACCTCATTT 57.537 42.857 0.00 0.00 0.00 2.32
1524 1731 3.372025 GGTAGGATTTCAGGCACCTCATT 60.372 47.826 0.00 0.00 34.42 2.57
1525 1732 2.173569 GGTAGGATTTCAGGCACCTCAT 59.826 50.000 0.00 0.00 34.42 2.90
1526 1733 1.559682 GGTAGGATTTCAGGCACCTCA 59.440 52.381 0.00 0.00 34.42 3.86
1527 1734 1.840635 AGGTAGGATTTCAGGCACCTC 59.159 52.381 0.00 0.00 30.59 3.85
1528 1735 1.972588 AGGTAGGATTTCAGGCACCT 58.027 50.000 0.00 0.00 36.65 4.00
1529 1736 2.239907 AGAAGGTAGGATTTCAGGCACC 59.760 50.000 0.00 0.00 0.00 5.01
1530 1737 3.636153 AGAAGGTAGGATTTCAGGCAC 57.364 47.619 0.00 0.00 0.00 5.01
1531 1738 5.772393 TTAAGAAGGTAGGATTTCAGGCA 57.228 39.130 0.00 0.00 0.00 4.75
1532 1739 7.646548 AAATTAAGAAGGTAGGATTTCAGGC 57.353 36.000 0.00 0.00 0.00 4.85
1540 1747 9.444600 GTGTGACAATAAATTAAGAAGGTAGGA 57.555 33.333 0.00 0.00 0.00 2.94
1541 1748 9.449719 AGTGTGACAATAAATTAAGAAGGTAGG 57.550 33.333 0.00 0.00 0.00 3.18
1557 1764 9.125026 AGAAAAGAGAACATTAAGTGTGACAAT 57.875 29.630 0.00 0.00 41.14 2.71
1558 1765 8.506168 AGAAAAGAGAACATTAAGTGTGACAA 57.494 30.769 0.00 0.00 41.14 3.18
1559 1766 8.506168 AAGAAAAGAGAACATTAAGTGTGACA 57.494 30.769 0.00 0.00 41.14 3.58
1562 1769 9.746711 CGATAAGAAAAGAGAACATTAAGTGTG 57.253 33.333 0.00 0.00 41.14 3.82
1563 1770 8.443937 GCGATAAGAAAAGAGAACATTAAGTGT 58.556 33.333 0.00 0.00 44.84 3.55
1602 1854 6.208988 TCAACTGATCTACCATGACACTAC 57.791 41.667 0.00 0.00 0.00 2.73
1653 1908 6.546772 TGCTTAAATGCAACCTCATGATATGA 59.453 34.615 0.00 0.00 40.29 2.15
1661 1916 3.485394 TCAGTGCTTAAATGCAACCTCA 58.515 40.909 0.00 0.00 45.12 3.86
1662 1917 4.503741 TTCAGTGCTTAAATGCAACCTC 57.496 40.909 0.00 0.00 45.12 3.85
1663 1918 4.584325 TCTTTCAGTGCTTAAATGCAACCT 59.416 37.500 0.00 0.00 45.12 3.50
1728 1983 8.903820 ACTCTAAACCAATAATGCTATGGTTTC 58.096 33.333 21.48 0.00 46.19 2.78
1745 2003 5.861727 TGTCCCTCTGTTTTACTCTAAACC 58.138 41.667 0.00 0.00 37.24 3.27
1751 2009 4.704965 ACTGTTGTCCCTCTGTTTTACTC 58.295 43.478 0.00 0.00 0.00 2.59
1796 2054 5.336150 TGGCAGAATTCACTTTGTTTCAA 57.664 34.783 8.44 0.00 0.00 2.69
1828 2087 3.778075 TGCTCTTACCCCTGTTTATGCTA 59.222 43.478 0.00 0.00 0.00 3.49
1864 2123 2.359214 TGTGTGTGTGTGTGTGTGTTTT 59.641 40.909 0.00 0.00 0.00 2.43
1904 2184 4.999950 AGAAGACCTGCTGTAAAGTTCATG 59.000 41.667 0.00 0.00 0.00 3.07
2200 2480 2.204461 ACCGGACATCGTCACACCA 61.204 57.895 9.46 0.00 37.11 4.17
2205 2485 4.429212 CGGCACCGGACATCGTCA 62.429 66.667 9.46 0.00 37.11 4.35
2226 2506 1.077501 GGTGGCAAGGCAGCTATCA 60.078 57.895 17.11 0.00 34.17 2.15
2267 2547 5.070685 ACAAGATTCAGTGGAAAAGGTACC 58.929 41.667 2.73 2.73 36.43 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.