>input_sequence_84353
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-------------------------------------------------------ATGGCGACCGCCACGC---------
---CGGCGATCCCGTTGCCGGACTACCAGGTGTCCGGCAGGGCGGCCGCCGCCCACCCGCGGGGGTCCGTCGGCCCGTTC
GTCGGGGTGCTCGCGGCCGTGCTGCTGCTCACCGCCCTGTCCTGCTTCTTTGGCCGGGTGTGCGCGGCGCACGCGCAGGG
GCCTGACGAGTGGTACGACTGCGCGAGGCTGGCCGGCCGCCGGAGATGCTGGTGGTGGCGGGCGCCTCGGCGGCCGGTCA
GGCCGGCCGAGGAGGAGGCCAAGCCGCCGCCGGCGATGCCGTTGCCTGAGCCGTGA------------------------
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>chr7D_1_TraesCS7D01G231900
CAAGAAATATGAATTCGTTTAGTGCATGAGGATGCTAACATGTTAGTGCATAAGGAGTAGTACTTTGCAAAGCTGACGTA
GAGCACTGTAAGTTGAGAAATGAGGT-AGAACTTTAGGAGCTGAACAAAGGTGAGTAACCTTGCCCGTTAAGCA------
---------TCTCTGAGTCAACTTTTTATGTCTTAGGATACCCCAGACCCCCATCCCATGGCGAGAAAGCTTCAAGAATG
CCAATCATGCAGGTAGCGTCCCTACCCTGCCAATCAGACAAATACTTACCATGCCGTCTTCCAGGCTGAGCAAGAAAGAC
ACAAACATTGTGGACAAGCCAACAAAGAAACGGGATGTAGTACATCTGTCACTCATCAATAATCCGCATCTCAAGATGAT
GCTCCACTAGCTTCAAAAAAAACAAGGGAAAGATTAATT--CATATCTGAATGAGATACCAT----TAGCTTAAATTCTG
TCAAAAGCAGTGCTTTGGAAGGGGTCAAGAGTGGCAACGTTTACAAGCAAAGCAACTTCAACTGTTAACAAGTACTCC--
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--------------------------------------------TTTCTCCTTTAGTTTTTCCTCTCATCC---TACATG
TTCCTTTATCCTTC-AATCCATGGCCATGCATCCAAAGAGGGAGGTTCTTCCTGGCATGCTCCACAATCATCATTAGATG
ATCAGATCAGCATCACAAGAGAACAGTTCCCATCTCTTTTTCTGCACATACATACATACACCATCTAGTAACATACTCTT
TGCTTTCTCCTCCATTC-TTTCCATGTCGGCGTCCACTTAAATCTTCCACAAAGCCAGCCCTCAGCCCTTTCCT--T-TT
TTCCCCTGGCCTTCATTGTTTTCCTATCCTCTCCTCTTCTCTCCAAT-----GGCACTATCCTCTATATGTAAATTTCGA
AAGGAAGTGACGCTTTCGCCCATTCCATTCCTTGCACTACACCCATGCATGCTCCCCTCACCCCGTCCAAGTCCAACA--
------AGTGCTCGCCACTGCCC------CATCGCCACCGTATCTCTGTTCAGCAATGGCGACCGCCACGC---------
---CGGCGATCCCGTTGCCGGACTACCAGGTGTCCGGCAGGGCGGCCGCCGCCCACCCGCGGGGGTCCGTCGGCCCGTTC
GTCGGGGTGCTCGCGGCCGTGCTGCTGCTCACCGCCCTGTCCTGCTTCTTTGGCCGGGTGTGCGCGGCGCACGCGCAGGG
GCCTGACGAGTGGTACGACTGCGCGAGGCTGGCCGGCCGCCGGAGATGCTGGTGGTGGCGGGCGCCTCGGCGGCCGGTCA
GGCCGGCCGAGGAGGAGGCCAAGCCGCCGCCGGCGATGCCGTTGCCTGAGCCGTGAATGATCGGTCGGCCTCAGGCTCCC
-GCTCTTCTCTTTGCTGCAGTTTGCAGGTTAGTATGATAGGAGAGACCAATAAAGAAAAAAGATACTCATACTATACACG
ATTGTAACATCATAATAATTC-----------------GCAGAATCTCTTTTTCTCTTAATTAGTGA-GAGATTTTGTAG
ATGTATTCCTTTCATCCTAATTAACATGAAAGATTCCTGCCATCAAAACAAATGAGGTGCCTGAAATCCTACCTTCTTAA
TTTATTGTCACA--------------------------------------------CTTAATGTTCTCTTTTCTTATCGC
AGCA-AAGAATATGTAGTGTCATGGTAGATCAGTTGAAT-AT--CATGAGGTTGTCTTCAAACACTTTCATATCATGAGG
TTGCATTTAAGCACTGAAAGAATCTGTTTCTGCGAAATGCAGTGCAATCATTTCATTATATAG---AAACCATAGCATTA
TTGGTTTAGAGTAAAACAGAGGGACAACAGTTACGTGGCAAAACGCAAAAGCCTTGAAACAAAGTG-AATTCTGCCATCA
GAGCACTAGCATAAACAGGGGTAAGAGCAAAAGAGAAGGGGGAAA---------------------ACACACACACACAC
ACACACACAGCCTTAAATTGCTACATGAACTTTACAGCAGGTCTTCTCTTGTTCTTCTTGTGGCCTATCTACGAAATTCT
GTGATCTAGCTCTATCCTCTGAACTGGAAGAACTGCATGGAACCATAGAAGCAACAATCCAAGAATATTCACAAGTTCTA
GCCAGTCCATCTTCTGTCATCTTTCAGGAGATGACATTCTATAATCTGTACAAAACACAAAATCTACTGAGAGAATGTCA
TCCTTCAACCTCTACGTCGGTTCCCTTTTTAACTTGCATGGCCTTGCCGTCGCGACGAGCAGAGATCCCAACCATCCTTT
GGTGTGACGATGTCCGGTGCCGTGATGATAGCTGCCTTGCCACCTCTGGGTCTTCAGCCTTCCCCAGGTACCTTTTCCAC
TGAATCTTGTTATGGAACATTGGAAAGA
>chr7A_2
-AAGAAATATGAATTCGTTCAGTGCATGAAGATGCTAACATGTTAGTGCGTGAGGAGTACTTTTT---AAAGCTGACGTA
CAGCACTGTAAGTTGAGAAATGAGGC-AGAACTTGAGGAGGTGAACAAAGGCGAGTAACCTTGCCCGTTAAGCAAACAAC
ATGATGTCCTCTCTGGGTCAGCTTTAAG---CTTAGGATACCCCAAACCCCCATCCCACGGCGAGAGAGCTTCAAGAACG
CCAATCATGCAGGCAGCGTCCCAACCCTGCCAATCAGACAAATACGTACCACGCCGTATTCCAAGCTGAGCAAGAAAG--
ACAAACACTGTGGGCAAGCCAACAAAGAAACGGGAAGC---ACATCTGTCACTCATCAATAATCCACATCTCAAGATGAT
ACCCCACCAGCTTC-AAAAAACCAAGGGAAAAAATAATGTCCATATCTGAATGAGATACCATTAGCTAGCTTAAATTCTG
TCAAAAGCAGTGCTTTGGAAGGG-TCGAGACTGGCAACGTTTACAAGCAAAGCAACTCCAACTGTTAACAACTACTCCCT
CTGTCCGGAAATACTTGTCATCAAAATGAATAAAAGAGGATGTATCTGGATGTATTTTAGTTCTAGATACACTCCTTTTT
GTTCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTACTCCTTTTTCCCTTTAGTTTTTCCTCTCATCATCATACATG
CTCCTTTATCCTTCAAATCCATGGCCATACATCCAAAGATGTTC-TTCTTCCCGGCATGCTCCACAATCATTATATACAT
ACACCATCT---------------AGTTCCCATCTCTTTTTCTGCACATACATACATACACCATCTAGTAACATACTCTT
TGCTTTCCTCTCCATTC-TTTCCATGTTGGCGTCCACTTAAATCTTCCACAAAGCCATCCCTCGACCCTTTCCTTCT-TT
TTTTCCTGGCCTTTATTATTTTCCCATCCTCTC-----CTCTCCAAT-----GGCACTATCCTCTACAAATAAATTTCGA
AAGCAGGTGACGCTTTCGCCCATGCCATTCCTTGCACTCCACCCAT----GCCCCCCTCGCCCCGTCCAAGCCCAACA--
------AGTGCTCGCGACTGCTCCACCAACACCGCCGCCGTACCTCTGTGCAGCAATGGCGACGGCCCCGC---------
---CGGCGATCCCGTTGCCGGACTACCAGGTGTCCGG---GGCGGCCGCGGCCCACCAGCGGGGCTCCGTCGGCCCGTTC
GTCGGGGTGCTCGCGGCGGTGCTGCTGCTCACCGCCATGTCATGCTTCTTCGGCCGGGTGTGCGCGGCGCACGCGCAGGG
GCCTGACGAGTGGTACGACTGCGCGAGGCTCGCCGGCCGCCGGAGATGCTGGTGGTGGCGGGCGCCTCGGCGGCCGGTCA
GGCCGGCCGAGGAGGAGGCCAAGCCGCCGCGGGCGATGCCGTTGCCTGAGCCGTGAACGATCGATCGGCCTCAGGCTTTC
TGCCCTTCTCTTTGCTGCAGTTTGCAGGTTAGTACGATAGGAGAGACCAATAAAGAAAAAAG------ATACTATACACG
ATTGTAACATCATAATAATTCATTTCTCCTACTAATTAGAAGAATCTCGTTTTCTTTTTACTAGTGA-GAGATTGTGTAG
ATGCATTCCGTTCATCCGAATTAACATGGAAATTTCCTGCCATCAAAG--------------------------------
----------CA--------------------------------------------ATTGATGTTCTCTTTTCTTATCGC
AGCATAAGACTATATAGTGTCATGGTAGGTCAGTTGAAT-ATATCATGAGGTTGTCTTCAAACACTTCCATATCAGATGG
TTGCACTTAGGCACTGAAAGAATCTGTTTCTGCGAAATGCAGTGCAATCATCTCATTTATATAAAAAAAACATAGCAATA
TCAGTTTACAGTAAAACAGAGGGACAACAGTTACGTGGCAAAACGCAAAAGTCATGAAACAAAGTGAAATTCTGCCATCA
GAGCACAAGCATAAAC--GGGTAAGAGCAAAAGAGAAGGGGGGAA---------------------ACACAAGCG----C
ACACACAGAGCCTAAAATTGCTAAATGAACTTTACAGCAGGTCTTCTCTTGTTCTTCTTGTGGCCTATCTACGAAATTCT
GTGATCTAGCTCTATCCTCTGAACTGGAAGAACTGCATGGAACCATAGAAGCAACAATCCAAGAATATTCACAAGTTCTA
GCCAGTCCATCTTCTGCCATCTTTCAGGAGATGGCATTCTATAATCTGTACAAAACGCAAAATCTACTGAGAGAATGTCA
TCCTTCAACCTCTATGTCGGTTCCCTTTTTAACTTGCATGGCCTTGCCGTCGCGACGAGCAGAGATCCCAACCATCCTTG
GGTGCGACGATGTCCGGTGCCGTGACGATAGCTGCCTTGCCACCTCTGGGTCTTCGGCCTTCCCCAAGTACCTTTTCCAC
TGAATCTTGTTATGGAACATTGGAAAGA
>chr7B_38
-------------------------------------ACATGTTAGTGCATGAGGAGTACTTTTT---AAAGCTGACGTA
CAGCACCGTAAGTTGAGAAATGATGTAAGAAGCTGGGGAGCTGAACAAAGGCGAGTAACCTTGCCCGTTAAGCAAACAAC
ATGATGACCTCTCTGAGTCAGCTTTTTACGCCTTAGGATA--------CCCCATCCCATGGCGAGAAAGCTTCAAAAATG
CCAATCGTGCAGGCAGCGTCCCTACCCCGCCAATCAGACAAATACGTACCATGCCGTCTTCCAGGCCGAGCAAGAAAGAC
ACAAACATTGTGGACAAGCCAACAAAGAAACGGGATGTAGTACATCTGTCACTCATCAATAATCCACATCTGAAGATGAT
ACTCCATTAGCTTC-AAAAAACCAAGGGGAAGAATAATT--CATATTTGAATGAGATACCAT----TAGCTTAAATTCTG
TCAAAAGCAGTGCTTTGGAAGGA-TCAAGAGTGGCAACGTTTACAAGCAAAGCAACTTCAACTGTTAACAAGTACTCC--
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--------------------------------------------TTTTTCCTTTATTTTTTCCTCTCAT----------G
TTTCTTTATCCTTCAAATCCATGGCCATACATCCAAAGAGGGAGGTTCTTCCCGGCATGCTCCACAATCATTAGTAGATG
ATCAGATCAGCATCACAAGAGAACAGTTCCTATCTCTTTTCTGCGG-----ATACATACACCATCTAGTAACATACTCTT
TGCTTTCTCCTCCATTCTTTTCCATGTTGGCGTCCACTTAAATCTTCCACAAAGCCAGCCCTCAGCCCTTTCCT--TCTT
TTCTCCTGGCCTTTATTATTTTCCTATCCTCTC-----CCCCTCGAACGTCCGGCACTATCCTCTGTATACAAGTTTCGA
AAGCAAGTGACGCTTTCGCCCATTCCATTCCTTGCACTCCACCCAT----GCTCCCCTCGCCCCGTCCAAGTCCAACAAG
TGCAGAAGTGCTCGCCACTGCTCCACCACCACC---ACCGTATCTCCGTTCTGCAATGGCGACCGCCACGCCGGCGGGGA
CGACGGCGATACCGTTGCCGGAATACCAGGTGTCCGGCGGGGCGGCCGCGGCCCACCAGCGGGGCTCCGTCGGCCCGTTC
GTCGGGGTGCTCGCGGCCGTGCTGCTGCTCACCGCCCTGTCCTGCTTCTTCGGCCGGGTGTGCGCGGCGCACGCGCAGGG
GCCTGACGAGTGGTACGACTGCACCAGGCTCGCCGGCCGCCGGCGATGCTGGTGGTGGCGGGCGCCTCGGCGGCCGGTCA
GGCCGGCCGAGGAGGAGGCCAAGCCGCCGCCGGCGATGCCGTTGCCTGAGCCGTGAATGATCGGTCCGCCTCAGTCTCCC
-GCTCTTCTCTTTGCTGCTGTTTGCAGGTTAGTATGATAGGAGAGACCAATAAAGAAAAA-G------ATACTATACACG
ATTGTAACATCATAATAATTAATTTCTTCTACTAATTAGCAGAATCTCCTTTTCTCTTTATTAGTGAAGAGATTTTGTGG
ATGTATTCCTTTCATCCGAATTAACATGGAAATTTCCTGCCATCAAAG--------------------------------
----------CAAATGAGGTGCCTGAAATCCTACCGCTTATTAATTTATTGTCACACTTAATGTTCTCTTTTCTTGTCGC
AGCA-AAGAATATATAGTGTCATGGTAGATCAGTTGTAAAATATCATGAGGTTGTCTTCAAACACTTCCATATCAGACGG
TTGCATTTAAGCACTGAAAGAATCTGTTTCTGCGAAATGCAGTGCAATCATCTCATTATATAT---AAACCATAGCATTA
TTAGTTTACAGTAAAACAGAGGAACAACAGTTACGTGGCAAAACGCAAAAGCCATGAAACAAGGTGAAATTCTGCCATCA
GAGCACAAGCATAAACAGGGGTAAGAGCAAAAGAGAAGGGGGGGAAACACACACACACACACACACACACACACACACAC
ACACACACAGCCTTAAA--GCTAAATGAACTTTACAGCAGGTCTTCTCTTGTTCCTCTTGTGGCCTATCTACGAAATTCT
GTGGTCTAGCTCTATCCTCTGAACTGGAAGAACTGCATGGAACCATAGAAGCAACAATCCAAGAATATTCACAAGTTCTA
GCCAGTCCATCTTCTGTCATCTTTCAGGAGATGACATTCTATAATCTGTACAAAACACAAAATCTACTGAGAGAATGTCA
TCCTTCAACCTCTACATCAGTTCCCTTTTTAACTTGCATGGCCTTGCCGTCGCGACGAGCAGATATCCCAACCATCCTTG
GGTGCGATGATGTCCGGTGCCGTGACGATAGCTGCCTTGCCACCTCCGGGTCTTCGGCCTTCCCCAAGTACCTTTTCCAC
TGAATCTTGTTATGGAACATTGGAAAGA
>SNPs
S------------------S---------S---------------------S-------S-SS--SSS------------
S---------------------------------S----------------S----------------------------
--------------------S-------S-S--------------S----------------------------------
-------------S-------------------------------S----------------------------------
-----------------------------------------------------------------S--------------
S-------------S------S-----------S----------------------------------------------
-----------------------S--------------------------------------------------------
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-----------------------------------------------S----------------------S---------
----------------------------S-----------------------S------------------S--------
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---------------------------S----------------------------------------------------
---S---------S---S---------------SSSSS-------------------------------S----------
---S----------------------------------S-------SSSS---------S--------------------
---------------------S---------S------------------------------------------------
--------------------------------------S----------S-------S------S---------------
--------------------------------------------------S-----------------------------
------------------------------S-------------------------------------------------
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--------------------------------------------------------------SSSSSS------------
------------------------------------------------S---------S---------------------
-----------------S----------S--SS--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS----------------------------------------------------------------------
-------------S-----------------------------------------------------S-------SSS--
---------------------------------------------------S----------S-----------------
--S-----S--------------------------------------------S--------------------------
------S-----------------------------------S-------------------------------------
-----------------------S--------------------------------------------------------
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-------------------------------------------------------------------------------S
----S--------------------S-----------------------------S----------S-------------
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>forward_1088
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----------------------------TCCTTGCACTACACCCATGC--------------------------------
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>reverse_2506
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-------------------------TGATAGCTGCCTTGCCACC------------------------------------
----------------------------
