AutoCloner

Multiple sequence alignment - TraesCS7D01G229400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G229400	chr7D	100.000	2589	0	0	1	2589	189909546	189912134	0.000000e+00	4782
1	TraesCS7D01G229400	chr7D	97.237	579	12	4	2012	2588	579794364	579794940	0.000000e+00	977
2	TraesCS7D01G229400	chr7D	86.464	591	59	16	2012	2588	400418987	400419570	1.690000e-176	628
3	TraesCS7D01G229400	chr7B	86.644	1475	101	53	574	2011	334453502	334454917	0.000000e+00	1544
4	TraesCS7D01G229400	chr7B	90.299	536	33	11	1	536	334452975	334453491	0.000000e+00	684
5	TraesCS7D01G229400	chr7A	90.144	1177	57	25	574	1694	194291146	194289973	0.000000e+00	1476
6	TraesCS7D01G229400	chr7A	90.055	543	32	10	41	563	194291738	194291198	0.000000e+00	684
7	TraesCS7D01G229400	chr7A	88.073	327	17	8	1689	2012	194289923	194289616	4.070000e-98	368
8	TraesCS7D01G229400	chr2D	95.855	579	21	3	2012	2588	124318289	124318866	0.000000e+00	933
9	TraesCS7D01G229400	chr2D	88.625	589	42	10	2012	2588	298695400	298695975	0.000000e+00	693
10	TraesCS7D01G229400	chr2D	88.312	539	37	10	2063	2588	22813530	22814055	7.870000e-175	623
11	TraesCS7D01G229400	chr2D	85.407	418	40	11	2012	2416	429080857	429080448	5.150000e-112	414
12	TraesCS7D01G229400	chr4D	95.701	535	21	2	2012	2544	7875495	7876029	0.000000e+00	859
13	TraesCS7D01G229400	chr4D	93.437	579	30	7	2012	2588	46680584	46680012	0.000000e+00	852
14	TraesCS7D01G229400	chr4B	87.516	777	40	28	1150	1918	624107964	624107237	0.000000e+00	845
15	TraesCS7D01G229400	chr1D	88.305	590	42	11	2012	2588	298928016	298927441	0.000000e+00	682
16	TraesCS7D01G229400	chr6D	88.156	591	42	7	2012	2588	434785888	434785312	0.000000e+00	678
17	TraesCS7D01G229400	chr5A	89.161	286	29	2	2012	2296	614914737	614915021	3.170000e-94	355
18	TraesCS7D01G229400	chr5A	88.811	286	30	2	2012	2296	614948080	614948364	1.470000e-92	350
19	TraesCS7D01G229400	chr5A	88.462	286	30	3	2012	2296	614927850	614928133	2.470000e-90	342
20	TraesCS7D01G229400	chr5A	88.462	286	30	3	2012	2296	614961765	614962048	2.470000e-90	342

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G229400	chr7D	189909546	189912134	2588	False	4782.000000	4782	100.0000	1	2589	1	chr7D.!!$F1	2588
1	TraesCS7D01G229400	chr7D	579794364	579794940	576	False	977.000000	977	97.2370	2012	2588	1	chr7D.!!$F3	576
2	TraesCS7D01G229400	chr7D	400418987	400419570	583	False	628.000000	628	86.4640	2012	2588	1	chr7D.!!$F2	576
3	TraesCS7D01G229400	chr7B	334452975	334454917	1942	False	1114.000000	1544	88.4715	1	2011	2	chr7B.!!$F1	2010
4	TraesCS7D01G229400	chr7A	194289616	194291738	2122	True	842.666667	1476	89.4240	41	2012	3	chr7A.!!$R1	1971
5	TraesCS7D01G229400	chr2D	124318289	124318866	577	False	933.000000	933	95.8550	2012	2588	1	chr2D.!!$F2	576
6	TraesCS7D01G229400	chr2D	298695400	298695975	575	False	693.000000	693	88.6250	2012	2588	1	chr2D.!!$F3	576
7	TraesCS7D01G229400	chr2D	22813530	22814055	525	False	623.000000	623	88.3120	2063	2588	1	chr2D.!!$F1	525
8	TraesCS7D01G229400	chr4D	7875495	7876029	534	False	859.000000	859	95.7010	2012	2544	1	chr4D.!!$F1	532
9	TraesCS7D01G229400	chr4D	46680012	46680584	572	True	852.000000	852	93.4370	2012	2588	1	chr4D.!!$R1	576
10	TraesCS7D01G229400	chr4B	624107237	624107964	727	True	845.000000	845	87.5160	1150	1918	1	chr4B.!!$R1	768
11	TraesCS7D01G229400	chr1D	298927441	298928016	575	True	682.000000	682	88.3050	2012	2588	1	chr1D.!!$R1	576
12	TraesCS7D01G229400	chr6D	434785312	434785888	576	True	678.000000	678	88.1560	2012	2588	1	chr6D.!!$R1	576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
567	594	0.107848	CGTTAGGCCCACTTACCAGG	60.108	60.0	0.0	0.0	0.00	4.45	F
589	657	0.170116	GGTGATTGGCGATGCGAAAA	59.830	50.0	0.0	0.0	29.01	2.29	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1477	1613	1.193203	CTAACAACTGTCTGCTGCGTG	59.807	52.381	0.0	0.0	0.00	5.34	R
1598	1734	1.418373	TGAGCGTTTCATCACTCGTG	58.582	50.000	0.0	0.0	31.64	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	3.574952	CCCCCTCAACACACTCCA	58.425	61.111	0.00	0.00	0.00	3.86
36	37	2.422803	CCCTCAACACACTCCAAAGGAA	60.423	50.000	0.00	0.00	0.00	3.36
91	92	1.649267	CGCGACGGATCAGATCAGA	59.351	57.895	16.59	0.00	0.00	3.27
92	93	0.239613	CGCGACGGATCAGATCAGAT	59.760	55.000	16.59	0.00	0.00	2.90
93	94	1.727535	CGCGACGGATCAGATCAGATC	60.728	57.143	17.44	17.44	42.89	2.75
94	95	1.268079	GCGACGGATCAGATCAGATCA	59.732	52.381	24.45	0.00	44.89	2.92
95	96	2.668001	GCGACGGATCAGATCAGATCAG	60.668	54.545	24.45	22.75	44.89	2.90
96	97	2.668001	CGACGGATCAGATCAGATCAGC	60.668	54.545	24.45	16.56	44.89	4.26
97	98	2.295629	GACGGATCAGATCAGATCAGCA	59.704	50.000	24.45	0.00	44.89	4.41
98	99	2.296752	ACGGATCAGATCAGATCAGCAG	59.703	50.000	24.45	16.08	44.89	4.24
119	130	1.927608	GAAAAGCCAGCCCGAAGAGC	61.928	60.000	0.00	0.00	0.00	4.09
134	146	4.640201	CCGAAGAGCCCTGATTAAATTTCA	59.360	41.667	0.00	0.00	0.00	2.69
135	147	5.125417	CCGAAGAGCCCTGATTAAATTTCAA	59.875	40.000	0.00	0.00	0.00	2.69
335	352	2.316108	TCCTGGCTTTGGGAAACTTTC	58.684	47.619	0.00	0.00	0.00	2.62
338	355	0.319555	GGCTTTGGGAAACTTTCGCC	60.320	55.000	14.23	8.40	41.47	5.54
377	395	0.673985	AAAGCAGAAAAGGGGCGAAC	59.326	50.000	0.00	0.00	0.00	3.95
414	432	5.519206	GCCTAACACTCCGTATTACTTTCTG	59.481	44.000	0.00	0.00	0.00	3.02
490	516	0.465642	TCCTGCTCGGAATCTCGCTA	60.466	55.000	0.00	0.00	39.40	4.26
499	525	2.226674	CGGAATCTCGCTAGTAGATGCA	59.773	50.000	13.97	0.00	33.95	3.96
515	541	6.881065	AGTAGATGCAGACATTGTTATGTGTT	59.119	34.615	0.00	0.00	44.90	3.32
516	542	6.579666	AGATGCAGACATTGTTATGTGTTT	57.420	33.333	0.00	0.00	44.90	2.83
528	555	2.292828	ATGTGTTTCTGACAAGGGGG	57.707	50.000	0.00	0.00	40.65	5.40
564	591	4.213666	GCGTTAGGCCCACTTACC	57.786	61.111	0.00	0.00	34.80	2.85
565	592	1.297364	GCGTTAGGCCCACTTACCA	59.703	57.895	0.00	0.00	34.80	3.25
567	594	0.107848	CGTTAGGCCCACTTACCAGG	60.108	60.000	0.00	0.00	0.00	4.45
589	657	0.170116	GGTGATTGGCGATGCGAAAA	59.830	50.000	0.00	0.00	29.01	2.29
590	658	1.202290	GGTGATTGGCGATGCGAAAAT	60.202	47.619	0.00	0.00	29.01	1.82
610	679	8.723260	CGAAAATTTTAAAATGTGTTGTGCTTG	58.277	29.630	14.04	0.00	0.00	4.01
633	702	3.689649	AGCATAACTTTTGGCGGTAAGAG	59.310	43.478	0.00	0.00	0.00	2.85
641	710	0.532573	TGGCGGTAAGAGAGAGCTTG	59.467	55.000	0.00	0.00	0.00	4.01
650	719	5.350091	GGTAAGAGAGAGCTTGTGTTTGATC	59.650	44.000	0.00	0.00	0.00	2.92
661	744	6.073003	AGCTTGTGTTTGATCTTACTAGTTGC	60.073	38.462	0.00	0.00	0.00	4.17
663	746	4.688879	TGTGTTTGATCTTACTAGTTGCGG	59.311	41.667	0.00	0.00	0.00	5.69
667	750	6.483974	TGTTTGATCTTACTAGTTGCGGAAAA	59.516	34.615	0.00	0.00	0.00	2.29
681	764	1.855360	CGGAAAAGCAGCTCGATCTAC	59.145	52.381	0.00	0.00	0.00	2.59
693	776	3.735240	GCTCGATCTACTGCAAGAATCTG	59.265	47.826	0.00	0.00	37.43	2.90
727	810	9.462174	CACAAAACTGAATAGCATTTGTTTAGA	57.538	29.630	0.00	0.00	41.46	2.10
923	1012	6.770542	ACGAAAGAGAAAGGGAGTAGAAAAT	58.229	36.000	0.00	0.00	0.00	1.82
924	1013	6.651225	ACGAAAGAGAAAGGGAGTAGAAAATG	59.349	38.462	0.00	0.00	0.00	2.32
937	1027	6.094186	GGAGTAGAAAATGAAAGAAAGCCGAT	59.906	38.462	0.00	0.00	0.00	4.18
971	1061	2.500229	GCTTAACCGCCCATATAAGCA	58.500	47.619	10.54	0.00	45.92	3.91
993	1083	1.745115	CATCGACCGCATTGTGGGT	60.745	57.895	19.96	10.79	37.55	4.51
1064	1179	1.956629	GAGGATCACTTCGGCCGGAA	61.957	60.000	27.83	16.94	33.17	4.30
1436	1566	1.741732	GCTCAAGTCCATGTGATCGCT	60.742	52.381	7.94	0.00	0.00	4.93
1477	1613	0.038251	TGCTCGTGTCTGTCCATGAC	60.038	55.000	0.00	0.00	35.21	3.06
1546	1682	2.024918	CTCTGTTTTGTGCGCCTGT	58.975	52.632	4.18	0.00	0.00	4.00
1552	1688	2.096169	TGTTTTGTGCGCCTGTAATACG	60.096	45.455	4.18	0.00	0.00	3.06
1598	1734	8.868635	ACGTAGAGGTAATAATAAGAGTTTGC	57.131	34.615	0.00	0.00	0.00	3.68
1627	1763	7.433680	AGTGATGAAACGCTCATGTATATACA	58.566	34.615	17.65	17.65	45.23	2.29
1728	1922	9.284968	ACATAGCTTTTTGAGTATGTTTACAGT	57.715	29.630	0.00	0.00	33.06	3.55
1750	1946	6.316140	CAGTAACCTTCAATACATAGCTTGCA	59.684	38.462	0.00	0.00	0.00	4.08
1751	1947	5.567138	AACCTTCAATACATAGCTTGCAC	57.433	39.130	0.00	0.00	0.00	4.57
1752	1948	4.848357	ACCTTCAATACATAGCTTGCACT	58.152	39.130	0.00	0.00	0.00	4.40
1753	1949	4.637534	ACCTTCAATACATAGCTTGCACTG	59.362	41.667	0.00	0.00	0.00	3.66
1754	1950	4.877823	CCTTCAATACATAGCTTGCACTGA	59.122	41.667	0.00	0.00	0.00	3.41
1755	1951	5.355071	CCTTCAATACATAGCTTGCACTGAA	59.645	40.000	0.00	0.00	0.00	3.02
1756	1952	6.127925	CCTTCAATACATAGCTTGCACTGAAA	60.128	38.462	0.00	0.00	0.00	2.69
1757	1953	6.426980	TCAATACATAGCTTGCACTGAAAG	57.573	37.500	0.00	0.00	42.29	2.62
1758	1954	6.172630	TCAATACATAGCTTGCACTGAAAGA	58.827	36.000	0.29	0.00	37.43	2.52
1759	1955	6.092670	TCAATACATAGCTTGCACTGAAAGAC	59.907	38.462	0.29	0.00	37.43	3.01
1760	1956	4.013267	ACATAGCTTGCACTGAAAGACT	57.987	40.909	0.29	0.70	37.43	3.24
1761	1957	5.152623	ACATAGCTTGCACTGAAAGACTA	57.847	39.130	0.29	2.81	37.43	2.59
1762	1958	5.174395	ACATAGCTTGCACTGAAAGACTAG	58.826	41.667	0.29	0.00	37.43	2.57
1763	1959	2.421619	AGCTTGCACTGAAAGACTAGC	58.578	47.619	0.29	0.00	40.37	3.42
1764	1960	2.038295	AGCTTGCACTGAAAGACTAGCT	59.962	45.455	0.29	0.00	43.14	3.32
1774	1970	9.221933	GCACTGAAAGACTAGCTAGATAGTATA	57.778	37.037	27.45	2.39	36.13	1.47
1799	1995	7.482654	TGTATTTCTTGCGATAAGAAGATGG	57.517	36.000	12.88	0.00	37.54	3.51
1800	1996	6.483307	TGTATTTCTTGCGATAAGAAGATGGG	59.517	38.462	12.88	0.00	37.54	4.00
1869	2067	0.109412	GAGCTGCTGTTGTGCATTCC	60.109	55.000	7.01	0.00	42.48	3.01
1870	2068	0.824595	AGCTGCTGTTGTGCATTCCA	60.825	50.000	0.00	0.00	42.48	3.53
1871	2069	0.388134	GCTGCTGTTGTGCATTCCAG	60.388	55.000	0.00	0.00	42.48	3.86
1872	2070	1.241165	CTGCTGTTGTGCATTCCAGA	58.759	50.000	12.08	0.08	42.48	3.86
1873	2071	1.610038	CTGCTGTTGTGCATTCCAGAA	59.390	47.619	12.08	2.65	42.48	3.02
1874	2072	2.230508	CTGCTGTTGTGCATTCCAGAAT	59.769	45.455	12.08	0.00	42.48	2.40
1875	2073	2.229543	TGCTGTTGTGCATTCCAGAATC	59.770	45.455	12.08	0.00	38.12	2.52
1924	2139	8.503458	AAAGGATACAGAAAGACTTCATCATG	57.497	34.615	0.00	0.00	41.41	3.07
1960	2175	9.385902	CATAAACACTAAAGAAACACTCACATG	57.614	33.333	0.00	0.00	0.00	3.21
1978	2193	9.306777	ACTCACATGTACAGATATCATCACTAT	57.693	33.333	5.32	0.00	0.00	2.12
2044	2259	5.631096	GGCTGCTCAGTATTTTTGAAGTTTC	59.369	40.000	0.00	0.00	0.00	2.78
2152	2369	7.794041	AACGTGGTATATCTAAAACCATGGTA	58.206	34.615	20.12	1.36	46.06	3.25
2351	2587	0.950555	TAGTGCAACAGGAAGCAGCG	60.951	55.000	0.00	0.00	42.14	5.18
2378	2614	6.284475	ACATTAGCTAGTACTAGACGTTCG	57.716	41.667	30.09	16.11	35.21	3.95

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	2.650322	GGTTCCTTTGGAGTGTGTTGA	58.350	47.619	0.00	0.00	31.21	3.18
19	20	1.681264	GGGTTCCTTTGGAGTGTGTTG	59.319	52.381	0.00	0.00	31.21	3.33
20	21	1.411074	GGGGTTCCTTTGGAGTGTGTT	60.411	52.381	0.00	0.00	31.21	3.32
23	24	1.350310	ACGGGGTTCCTTTGGAGTGT	61.350	55.000	0.00	0.00	31.21	3.55
25	26	0.179001	CAACGGGGTTCCTTTGGAGT	60.179	55.000	0.00	0.00	38.28	3.85
26	27	1.524008	GCAACGGGGTTCCTTTGGAG	61.524	60.000	4.28	0.00	41.14	3.86
27	28	1.529713	GCAACGGGGTTCCTTTGGA	60.530	57.895	4.28	0.00	41.14	3.53
28	29	1.805428	CTGCAACGGGGTTCCTTTGG	61.805	60.000	4.28	0.00	41.14	3.28
29	30	1.106944	ACTGCAACGGGGTTCCTTTG	61.107	55.000	0.00	0.00	42.98	2.77
30	31	0.822121	GACTGCAACGGGGTTCCTTT	60.822	55.000	0.00	0.00	0.00	3.11
36	37	4.003788	CCTCGACTGCAACGGGGT	62.004	66.667	19.62	0.00	45.10	4.95
77	78	2.296752	CTGCTGATCTGATCTGATCCGT	59.703	50.000	29.27	6.63	41.42	4.69
91	92	0.969409	GCTGGCTTTTCCCTGCTGAT	60.969	55.000	3.25	0.00	43.90	2.90
92	93	1.604593	GCTGGCTTTTCCCTGCTGA	60.605	57.895	3.25	0.00	43.90	4.26
93	94	2.643232	GGCTGGCTTTTCCCTGCTG	61.643	63.158	9.41	0.00	45.79	4.41
94	95	2.283460	GGCTGGCTTTTCCCTGCT	60.283	61.111	9.41	0.00	45.79	4.24
95	96	3.385384	GGGCTGGCTTTTCCCTGC	61.385	66.667	0.00	1.96	45.79	4.85
96	97	3.064324	CGGGCTGGCTTTTCCCTG	61.064	66.667	0.00	0.00	37.89	4.45
97	98	2.771328	CTTCGGGCTGGCTTTTCCCT	62.771	60.000	0.00	0.00	37.89	4.20
98	99	2.282887	TTCGGGCTGGCTTTTCCC	60.283	61.111	0.00	0.00	36.68	3.97
119	130	3.434637	CGCGGTTGAAATTTAATCAGGG	58.565	45.455	0.00	0.00	0.00	4.45
154	166	0.534203	TTCACGTCAAACCCTGCCTC	60.534	55.000	0.00	0.00	0.00	4.70
377	395	2.097466	GTGTTAGGCCATTTGATCCACG	59.903	50.000	5.01	0.00	0.00	4.94
414	432	4.801330	ATTACTTTTGGCCAGCTTAACC	57.199	40.909	5.11	0.00	0.00	2.85
490	516	6.409704	ACACATAACAATGTCTGCATCTACT	58.590	36.000	0.00	0.00	33.50	2.57
499	525	7.255242	CCTTGTCAGAAACACATAACAATGTCT	60.255	37.037	0.00	0.00	37.70	3.41
547	574	0.743345	CTGGTAAGTGGGCCTAACGC	60.743	60.000	4.53	0.00	0.00	4.84
548	575	0.107848	CCTGGTAAGTGGGCCTAACG	60.108	60.000	4.53	0.00	0.00	3.18
549	576	0.255033	CCCTGGTAAGTGGGCCTAAC	59.745	60.000	4.53	1.09	36.61	2.34
551	578	0.326238	CTCCCTGGTAAGTGGGCCTA	60.326	60.000	4.53	0.00	43.04	3.93
552	579	1.616628	CTCCCTGGTAAGTGGGCCT	60.617	63.158	4.53	0.00	43.04	5.19
554	581	2.998949	CCTCCCTGGTAAGTGGGC	59.001	66.667	0.00	0.00	43.04	5.36
563	590	1.987807	ATCGCCAATCACCTCCCTGG	61.988	60.000	0.00	0.00	42.93	4.45
564	591	0.816825	CATCGCCAATCACCTCCCTG	60.817	60.000	0.00	0.00	0.00	4.45
565	592	1.528824	CATCGCCAATCACCTCCCT	59.471	57.895	0.00	0.00	0.00	4.20
567	594	2.537560	CGCATCGCCAATCACCTCC	61.538	63.158	0.00	0.00	0.00	4.30
570	637	0.170116	TTTTCGCATCGCCAATCACC	59.830	50.000	0.00	0.00	0.00	4.02
572	639	2.937469	AATTTTCGCATCGCCAATCA	57.063	40.000	0.00	0.00	0.00	2.57
577	644	5.727592	CACATTTTAAAATTTTCGCATCGCC	59.272	36.000	10.77	0.00	0.00	5.54
589	657	6.947258	GCTCAAGCACAACACATTTTAAAAT	58.053	32.000	7.64	7.64	41.59	1.82
590	658	6.343226	GCTCAAGCACAACACATTTTAAAA	57.657	33.333	2.51	2.51	41.59	1.52
610	679	3.687698	TCTTACCGCCAAAAGTTATGCTC	59.312	43.478	0.00	0.00	0.00	4.26
617	686	2.613223	GCTCTCTCTTACCGCCAAAAGT	60.613	50.000	0.00	0.00	0.00	2.66
619	688	1.623811	AGCTCTCTCTTACCGCCAAAA	59.376	47.619	0.00	0.00	0.00	2.44
633	702	7.093992	ACTAGTAAGATCAAACACAAGCTCTC	58.906	38.462	0.00	0.00	0.00	3.20
641	710	4.927425	TCCGCAACTAGTAAGATCAAACAC	59.073	41.667	0.00	0.00	0.00	3.32
650	719	3.424962	GCTGCTTTTCCGCAACTAGTAAG	60.425	47.826	0.00	0.00	39.80	2.34
661	744	1.855360	GTAGATCGAGCTGCTTTTCCG	59.145	52.381	14.67	2.48	0.00	4.30
681	764	2.481568	TGCTTCGTTCAGATTCTTGCAG	59.518	45.455	0.00	0.00	0.00	4.41
693	776	4.613031	GCTATTCAGTTTTGTGCTTCGTTC	59.387	41.667	0.00	0.00	0.00	3.95
727	810	7.112452	ACTTTACTTGACCATTTTTCTGCTT	57.888	32.000	0.00	0.00	0.00	3.91
901	990	8.622948	TTCATTTTCTACTCCCTTTCTCTTTC	57.377	34.615	0.00	0.00	0.00	2.62
971	1061	1.375908	ACAATGCGGTCGATGCTGT	60.376	52.632	12.89	7.65	0.00	4.40
1064	1179	1.721691	CCTCCTCCTCCCTGGATATCT	59.278	57.143	2.05	0.00	45.16	1.98
1158	1276	2.825836	GGCGATTCCCACTGCAGG	60.826	66.667	19.93	6.95	0.00	4.85
1320	1447	2.037136	CAGCCGCTTCTTGACCCTG	61.037	63.158	0.00	0.00	0.00	4.45
1321	1448	2.348998	CAGCCGCTTCTTGACCCT	59.651	61.111	0.00	0.00	0.00	4.34
1436	1566	4.349503	AACCAGCTCGCCATGGCA	62.350	61.111	34.93	20.95	40.45	4.92
1477	1613	1.193203	CTAACAACTGTCTGCTGCGTG	59.807	52.381	0.00	0.00	0.00	5.34
1546	1682	6.294342	GGGACACACATAGATACAGCGTATTA	60.294	42.308	3.35	0.57	0.00	0.98
1552	1688	4.556898	CGTAGGGACACACATAGATACAGC	60.557	50.000	0.00	0.00	0.00	4.40
1598	1734	1.418373	TGAGCGTTTCATCACTCGTG	58.582	50.000	0.00	0.00	31.64	4.35
1728	1922	6.316140	CAGTGCAAGCTATGTATTGAAGGTTA	59.684	38.462	0.00	0.00	34.03	2.85
1786	1982	2.366916	ACTCAGGCCCATCTTCTTATCG	59.633	50.000	0.00	0.00	0.00	2.92
1799	1995	1.544724	TGGCACAATTTACTCAGGCC	58.455	50.000	0.00	0.00	40.29	5.19
1869	2067	5.523188	GTCTGTTGAGCTAATCTGGATTCTG	59.477	44.000	0.00	0.00	32.50	3.02
1870	2068	5.188555	TGTCTGTTGAGCTAATCTGGATTCT	59.811	40.000	0.00	0.00	32.50	2.40
1871	2069	5.423015	TGTCTGTTGAGCTAATCTGGATTC	58.577	41.667	0.00	0.00	32.50	2.52
1872	2070	5.426689	TGTCTGTTGAGCTAATCTGGATT	57.573	39.130	0.00	1.40	34.93	3.01
1873	2071	5.426504	CTTGTCTGTTGAGCTAATCTGGAT	58.573	41.667	0.00	0.00	0.00	3.41
1874	2072	4.323028	CCTTGTCTGTTGAGCTAATCTGGA	60.323	45.833	0.00	0.00	0.00	3.86
1875	2073	3.937706	CCTTGTCTGTTGAGCTAATCTGG	59.062	47.826	0.00	0.00	0.00	3.86
1978	2193	3.952323	CCGACTTCTCCTCCAGTGTATTA	59.048	47.826	0.00	0.00	0.00	0.98
1987	2202	2.359531	CACAGATACCGACTTCTCCTCC	59.640	54.545	0.00	0.00	0.00	4.30
2044	2259	5.982890	ACAAAAACCATGGTATTCTCCTG	57.017	39.130	20.12	11.06	0.00	3.86
2246	2465	3.684981	GCTGCAGAAGAGATGGAGGAATT	60.685	47.826	20.43	0.00	36.69	2.17
2351	2587	5.176590	ACGTCTAGTACTAGCTAATGTACGC	59.823	44.000	25.68	8.04	42.53	4.42
2378	2614	2.501723	ACACACACCATCTGATAGGACC	59.498	50.000	11.46	0.00	0.00	4.46

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.