>input_sequence_74988
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------AGCGAGCGGCGCAGCAAGCCAA--------
----AGCCAACGATCGCCGCCAA------------AATGGAGGATCACTTCGGCCGGAAGATATCCAGGGAGGAG---GA
GGCGGTGGTGAAGCCGACGAGGAGCTTCCGGTACGAGGACTACAGCACCAGGAGGGTGTTCCTGCGCAGCTACCCCCTGC
AGTGGGAATCGCCGGCGCCCGGCGGCGGCGACGA---GAAGCAGGGCGAGGCGGAGGACGACGA---GGACCGGTA---C
GACGGCGGCGGCCGCGACAGGCGGTGGAAGCGGCAGGTGGTGGTGGCGGTGGTGGAGTGGGGGGAGGACAAGCTGCTGCT
GCTCCGCAGGGTCAAGAAGCGGCTGGCGCTCTACCTCATCGGCTGCCACTACAGCCGCCCCGCGCTGCCGTACAAGTC--
-CGGCGGCTCATGCACCACCGCCATGCTCAAGTCCATGTGATCGCT----GCCATGGCGAGCTGGTTCAGCTGCTCGTGT
--CTGTCCATGACACGCAGCAGACAGTTGTTAGTCTGCTCGTGCCGTCAGCCTTTCCCTGCTGCTCTGTTTTGTGCGCCT
GTAATACGCTGTATCTATGTGTGTCCCTACGTAGAGGTAATAAT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr7D_1_TraesCS7D01G229400
TCCAGCACGCCGCCCCCCTCAACACACTCCAAAGGAACCCCGTTGCAGTCGAGGTCATACCACATCGACACGGCGCGACG
GATCAGATCAGATCAGCAGGG----------AAAAGCCAGCCCGAAGAGCCCTGATT-AAATTTCAACCGCGGGCGCGAG
AAAAAGAGGCA-GGGTTTGACGTGAAATCTCTTCACATATCGCGAGGATTGGCCAAAAGCGGCGAAAACTCTGGCCGGCC
GTGTCACCGCCGGC----TGGCTTTGTGTGGCCGCGCCGCGCGTCATGTGCGTTATCCGGTGAAAAGCCCCGGCGCTGCA
CAGCCACTCCATCCTGGCTTTGGGAAACTTTCGCC-GGCCCGCCTTGCCAAAGTGAAAGCAGAAAAGGGGCGAACGTGGA
TCAAATGGCCTAACACTCCGTATTACTTTCTGGTTAAGCTGGCCAAAAGTAATTTGGGAAAGAGATGCCGGTGAATGAAC
CCATTTCGTCCTGCTCGGAA--------TCTCGCTAGTAGATGCAGACATTGTTATGTGTTTCTGACAA-GGGGGGCCGC
TCCTCCTTGGGGGGCGTTAGGCCCACTTACCAGG----------------------------------------GAGGTG
ATTGGCGATGCG-AAAATTTTAAAATGTGTT-GTGCTTGAGCATAACTTTTGGCGGTAAGAGAGAGCTTGTGTTTGATCT
TACTAG--------------TTGCGGAAAAGCAGCTCGATCTACTGCAAGAATCTGAACGAAGCACAAAACTGAATAGCA
TTTGTTTAGAAGCAGAAAAATGGTCAAGTAAAGTCGCCCGTCCGAGTGGTTGCCATCAGATTACCGGCAAAGGAAATCCT
TCGCCCGGAAAGCATTGAAAAACACCTCCGTGCCAGGCCCATCAAACCGCGCGAATTATTATTAATTAATTAAACCATCT
CGCCCACACGGCCCACG------CACGACGAAAGAGAAAGGGAGTAGAAAATGAA-AGAAAGCCGATGTGGCCGCCCGCC
GCTTAACCGCCCATATAAGCACAGCATCGACCGCATTGTGGGTTCAGCC-AGCGAGCGGCGCAGCAAGCCAA--------
----AGCCAACGATCGCCGCCAA------------AATGGAGGATCACTTCGGCCGGAAGATATCCAGGGAGGAG---GA
GGCGGTGGTGAAGCCGACGAGGAGCTTCCGGTACGAGGACTACAGCACCAGGAGGGTGTTCCTGCGCAGCTACCCCCTGC
AGTGGGAATCGCCGGCGCCCGGCGGCGGCGACGA---GAAGCAGGGCGAGGCGGAGGACGACGA---GGACCGGTA---C
GACGGCGGCGGCCGCGACAGGCGGTGGAAGCGGCAGGTGGTGGTGGCGGTGGTGGAGTGGGGGGAGGACAAGCTGCTGCT
GCTCCGCAGGGTCAAGAAGCGGCTGGCGCTCTACCTCATCGGCTGCCACTACAGCCGCCCCGCGCTGCCGTACAAGTC--
-CGGCGGCTCATGCACCACCGCCATGCTCAAGTCCATGTGATCGCT----GCCATGGCGAGCTGGTTCAGCTGCTCGTGT
--CTGTCCATGACACGCAGCAGACAGTTGTTAGTCTGCTCGTGCCGTCAGCCTTTCCCTGCTGCTCTGTTTTGTGCGCCT
GTAATACGCTGTATCTATGTGTGTCCCTACGTAGAGGTAATAATAAGAGTTTGCACGAGTGATGAAACGCTCATGTATAT
ACAGTATTTTCTTGTGAAATTTTTGTCATATGATAGATGGACAGATCATACTGATTACTGTTC-----------------
--------------------------------------CAGGAACCTTCAATACATAGCTTTTTGAGTATGTTTA---CA
GTAACCTTCAA--TACATAGCTTGCACTGAAAGACTAGCTAGATAGTATATGTATTTCTTGCGATAAGAAGATGGGCCTG
AGTAAATTGTGCCAAGCTATTTCACAGGTTATTTTTTTA--TACGTAGAGCTGCTGTTGTGCATTCCAGAATCCAGATTA
GCTCAACAGACAAGGAAAAG-GATACAGAAAGACTTCA----------------TCATGGTATAACAACATAAACACTAA
AGAAACACTCACATGTACAGATATCATCACTATAATACACTGGAGGAGAAGTCGGTATCTGTGCAGCTGCGTTTGGCTGC
TCAGTATTTTTGAAGTTTCAGGAGAATACCATGGTTTTTGTAGAAACCTCAGTTTTAAATACTTTGACGTGTTTGGCTTC
GACAAATACTTTAGTTTTACAAAC-GTGGTATATCTAAAACCATGG-TA-TTTT-GCTGTATCTAAAAAAGAGGTCTCAA
CCTCTTTTTTGTAAACTGAGAAACACTAGCTCAAGTCTATCTTCTTCGGGTCCTCCTCACCCATAATTCCTCCATCTCTT
CTGCAGCCAGA-------AAATCAAGATTACCACATGGGAAACTTCACTACTCTG----------CTTCAATCGTTGACT
ATTGTTCTAGTGCAACAGGAAGCAGCGCGTACATTAGCTAGTACTAGACGTTCGGTCCTATCAGATGGTGTGTGTACAGA
TACAAAAGATTTAGCGAAGGCTTAGACCCTGGAGTAGATCAATTGATACTTGGAGTAAACTTATACACAGCAGGCTAAGC
TAGCTAGCCGATTGATTCCATGTGGCCAGAGAAACAAGATTACTCAACAACATATCCTAGCATCTAAAGGATGTTCGCGT
GCATGACAAGGCTATAGGCATGCG-
>chr7B_1
TCCAGTACGCCGCCCCCCAACACTCC-----AAGGAGCCCCGTTGCAGTCGAGGTCATACCATATCCACACGGCGCGGCG
GATCAGATCAGCA------GG----------AAAAGCTATCCCGAAGAGTCCTGATT-AAATTTCTCCCGCGGGCGCGAG
AAAAA-AGGCA-GGATTTGACGTGAAATCTCTTCACATATCGCGAGGATTGGCCAAAAGCGGCGAAAACTCTGGCCGGCC
GTGTCACCGCCGGC----TGGCTTTGTG--GCCGCGCCGCGCGTCATGTGCGTTATCCGGTGAAAAGCCCCGGCGCTGCA
GAGCCACTCCATCCTGGCTTTGCAAAACTTTTCC-TGGCCCGCCTTGCCAAAGTGAAAGCAGAAAAGGA--GAATGTGGA
TC-AATGGCCTAACACTC--TATTACTTTCTCGTTAAGCTGGCCAAAAGTAATTTGGGAAAGAGATGGCGGTGAATGAAC
CCATTTCGTCCTGCTCGGAAC--------CTCGCTCCTAGAAGCGGGCATTGTTATGTGTAGCTGACACCAGGGCCCGCT
CGTTA--------------------------------------------------------------------TGATGAG
ATTAGCGATGCG-AAATCTTTAAAATGTGTTTGTGCTTTAGCATAGCCTTTGGCCGTAAGAAAGAGCTTTTGCTTGATTT
TACTAGTTGAG-------------GAAAACGCATATGGATCTCTTGCAAGAATCTCAGCGAAGCACAGAATTGAATAGCA
TTTGTTTAGGAGCAGAAAAATGGTCAAGTAAAGTCGTCCGTCCGAGTGGTTGCCATCAGATTACCGGCAAAGGAAATCCT
TCGCCCAGAAAGCATTGAAAAACACCTCCGTGCCAGGCCCATCAAACCACCCGAATTGTT------------AACCCGCT
CGCCCACACGGGCCACGGTCACGCACGACAAGAGAAAGGCGGAGAAGAAAAATAAGAGAAAGACGACGTTGGCGCCCGCC
GCTTAACCGCCCATATAAACCCTGCGTCGACCGCATTGTGGGCTCAGCCAAGCGAGCGGCGTAGCAAGCCAAGCCAAGTA
GCCAAGCAAACGATCGCCGCCAA------------AATGGAGGATCACTTCGGCCGGAGGATATCCAGGGAGGAG---GA
GGCGGTGGTGAAGCCGACGAGGAGCTTCCGGTACGAGGACTACAGCACCAGGAGGGTGTTCCTGCGCAGCTACCCTCTGC
AGTGGGACTCGCCGGCGCCCGGCGGCGGCGACGA---GAAGAAGGGCGAGGTGGAGGACGACGACGAGGAGCGGTAC---
GACGGCGCCGGCCGCGACAGGAGGTGGAAGCGGCAGGTGGTGGTGGCGGTGGTGGAGTGGGGGGAGGACAAGCTGCTGCT
GCTCAGGCGGGTCAAGAAGCGGCTGGCGCTCTACCTCATCGGCTGCCACTACAGCCGCCCCGCGCTGCCGTACAAGTC--
-CGGCGGCTCATGCACCACCGCCATGCTCAAGTCCATGTGATCGC----CGCCGTGGCGAGCCGGTTCAGCTGCTCGTGT
GTCTGTCCATGATACGCAGCAGACAGTTGTTAGTCTGCTCGTGCCGTCTGCC-TTCCATGCTGCTCTGTTTTGTGCGCCT
GAAATACTCTGTATCTATGTGTGTCCCTACGTAGAGGTAATAATAAGAGTTTGTACGAGTGATGAAACGCTCATGTATAT
A-----TTTTCTTGTGAAATCTTTGTCATATGATAGATGGACAGATCAT---------TGTTC-----------------
--------------------------------------CAGGAACCTTCAATACATAGCTTTTTGAGTATGTTTA---CA
GGAACCTTCAAAATACATAGCGAGA---------------------TATGTGTATTTCTTGGGATGAGAAGATGACCCTG
AGTAAATTGTACTACAGTATTTCACAGTTTTTGTTTTTTGGTATGTAGAACTGCTGTTGTGATTTC-------CAAATTA
GCTCAACAGACAAGTAAAAAAGATACATAAGACTTTTGACTGGAACTCCGCTGCTCATCGTATAACAACACATATAGAGT
AC---------------CAGATGTCATCACTAAGATACACTAGAAGAGAAGTCGGTATCCGTGCA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr7A_41
----------------------------------------CGTTGCAGTCGAGGTCATACCACATCGACACGGCGCGGCG
GATCAGATCATCA------GCTCAGCAGGGAAAAAGCCAGCCCGAAGAGTCCTGATTAAAATTTCTCCCGCGGGCGCGAG
GAAAA-AGGCATGGGTTTGACGTGAAATCCCTTCGCATATCGCGAGGATTGGCCAAAAGCGGCGAAAGCTCTGGCCGGCC
GTGTCACCGCCGGCGGGCTGGCTTTGTGCGGCGGCGCCGCGCGTCATGTGCGTTATCCGGTGAAAAGCCCCGGCGCTGCA
GAGCCACTCCATCCTGGCTTTGGGAAACTTTTGCTTGGCCCGCCTTGCCAAAGTGAAAGCAGAAAAGGGGCGAATGTGGA
TCAAATGGCCTAACACTCCGTATTACTTTCTCGTTAAGCTGGCCAAAAGTAATTTGGGAAAGAGATGCCGGTGAATGAGC
CCATTTCACCCTGCTCGGAAAGCCGGAATCTCGCTCGTAGATGCGGATATTGTTATGTGTGGCTGGCAAGGGGGACCCGC
TTGTCCTTGGGGTCATTGCGCCCACTTATTTCGTTACGAGACATCACGCTGGGGCTATGCATTGACCATGCTCTGAAGAG
ATTAGTGATGTGTAAATCTTTAAAATGTGTTTGTGCTTCAGCATAGCCTTTGGCGGT-AGAAAGAGCTTCTATTCCATTT
TACTAGTAAGTACCCCGTAGTTGAGAAAAGGCAGCCCGATCTATTGCAAGAATCTCAACTTAGCACAAAACTGAATAGCA
TTTGTTTAGGAGCAGAAAA-TGGTCAAGTAAAGTCGCCCGTCCGAGTGGTTGCCATCAGATTACCGGCAAAGGAAATCCT
TGGCCCGGAAAGCATTGAAAAACACCTCCGTGCCAGGCACATCAAACCGCGCGAATTATTATTAATTAATTAAACCATCT
CGCCCACACGGCCCACG------CACGACAAAAGAGAAAGGGGGTAAAAAAATGAAGGAAAGCCGACGTGGCCGCCCGCC
GCTTAACCGCCCATATAAGCGCAGCATCGGCCGCATTGTGGGCTCAGCC-AGCGAGCGGCGCAGCAAGCCAAGCAGCCA-
---AAGCCAACGATCATCGCCTCGTCGTCGTCGGCAATGGAGGATCACTTCGGCCGGAGGATATCCAGGGAGGAGGAGGA
GGCGGTGGTGAAGCCGACGAGGAGCTTCCGGTACGAGGACTACAGCACCAGGCGGGTGTTCCTGCGCAGCTACCCTCTAC
AGTGGGACTCGCCGGCGCCCGGCGGCGGCGTCGACGAGAAGCAGGGCGGGGCGGAGGACGACGACGAGGACCGGTACGGC
GACGGCGGCGGCCGCGACAGGCGGTGGAAGCGGCAGGTGGTGGCGGCGGTGGTGGAGTGGGGCGAGGACAAGTTGCTGCT
GCTCCGGCGGGTCAAGAAGCGGCTGGCGCTCTACCTCATCGGCTGCCACTACAGCCGCCCCGCGCTGCCGTACAAGTACG
GCGGCGGCTCATGCACCACCGCCATGCTCAAGTCCATGTGATCGCCCGCCGCCATGGCGAGCTGGCTCAGCTGCTCGTGT
--TTGTCCATGATACGCGGCAGACAGTTGTTAGTCTGCTCGTGCCATTAGCCTTTCCCTGCTGCTCTGTTTTGTGCGCCT
GAAATACTCTGTATCTATGTGTGTCCCTACGTAGAGGTAATAATAAGAGTTTGTACGAGTGATGAAACGCTCATGTATAT
AC-GTATTTTCTTGTGAATTTTTTGGCATATGGTAGATGGACAGATCATACTGATTATTGTTCCAGGAATTTGTCAGAGA
AAAGGAACCTCCAATACATACATAGCTTTTCATGCTTACAGGAACCTTCAATACATAGCTTTTTGAGTATGTTTATTACA
GGAACCTTCAAAATACATAGCTTGCG--------------AGATAGTATGTGTTTTTCTTGGGATAAGAAGATGATCCTG
AGTAAATTGTGCCAAGCTGTTTCACAGGTTATTTTTTTA--TACGTAGAGCTGCTGTTGTGCATTC-------CAGATTA
GCTCAACAGACAAGGAAAAG-GATACAGAAAGACCTCA----------------TCATTGTATAACAACATAAACACTAA
AGAAACACTCACATATACAGATATCATCGCTAAAATGGACTAGAGGAGAAGTCGGTATCTGTGCAG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr4B_1150
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------CAGCTACCCTCTGC
AGTGGGACTCGCCGGCGCCCGGCGGCGGCGG---CGAGAAGCAGGGCGAGGCGGAGGACGACGACGAGGAGCGGTA---C
GACGGCGGCGGCCGCGACAGGCGGTGGAAGCGGCAGGTGGTGGTGGCCGTGGTGGAGTGGGGGGAGGACAAGCTGCTGCT
GCTCAGGCGGGTCAAGAAGCGGCTGGCGCTTTACCTCATCGGCTGCCACTACAGCCGCCCCGCGCTGCCGTACAAGTC--
-CGGCGGCTCATGCACCACCGCCATGCTCAAGTCCATGTGAG----CGCCGCCATGGCGAGCTGGCTCAGCTGCTCGATC
G--TGTCCATGATACACAGCAGACAGTTGTTAGTCTGCTCGTGCCGTCTGCC-TTCCATGCTGCTCTGTTTTGTGCGCCT
GAAATACTCTGTATCTATGTGTGTCCCTACGTAGAGGTAATAATAAGAGTTTGTACGAGTGATGAAACACTCATGTATAT
A-----TTGTCTTGTGAAATCTTTGTCATATGATAGATGGACAGATCAT---------TGTTC-----------------
--------------------------------------CAGGAACCTTCAATACATAGCTTTTTGAGTA---------CA
GGAACCTTCAAAATACATAGCGAGA---------------------TATGTGTATTTCTTGGGATAAGAAGATGACCCTG
AGTAAATTGTACTACAGTATTTCACAGTTTTTGTTTTTTGGTACGTAGAACTGCTGTTGTGATTTC-------CAAATTA
GCTCAACAGACAGGTAAAAAAGATAAATAAAGACTT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr7D_2012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------GCTGCGTTTGGCTGT
TCAGTA-TTTTGAAGTTTTAGGAGAATACCATGGTTTTTATAGAAACCTCAGTTTTAAATACTTTGACATGTTTGGCTTT
GACAAATACTTTAGTTTTACAAACCATGGTATATCTAAAACCATGG-TTTTTTT-GCTGTATCTAAAAAAGAGGTCTCAA
CCTCTTTTTTGTAAACTGAGAAACACTAGCTCAAGTCTATCTTCTTCGGGTCCTCCTCACCCATCATTCCTCCATCTCTT
CTGCAGCCAGC-------AAATCAAGATTACCACATGGGAAACTTCACTACTCTG----------CTTCAATCGTTGACT
ATTGTTCTAGTGCAACAGGAAGCAGCCCGTACATTAGCTAGTACTAGACGTTCAGTCCTATCAGATGGTGTGTGTACAGA
TACAAAAGATTTAGCGAAGGCTTAGACCCTGGAGTAGATCAATTGATACTTGGAGTAA-CTTATACACAACAGGCTAAGC
TAGCTAGCCGATTGATTCCATGTGGCCAGAGAAACAAGATTACTCAACAACATATCCTAGCATCTAAAGGATGTTCGCGT
GCATGACAAGGCTATAGGCATGC--
>chr7D_2012
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------GCTGCGTTTGGCTAC
TCAGTATTTTTGAAGTTTTAAAAGAATATCATGGTTTTTGGAAAAATCTCAGTTTTAAATACTTTGACATGTTTGGTTTC
GACAAATACTTTAGTTTTACAAACCGTGGTATATCTAAAACCATGG-TTTTTTTTGTTGTATCTAAAAAAGAGGTCTCAA
CCTCTTTTTTGTAAACTGAGTAACACTTGCTTGAGTCCATCTTCTTCCAGTCCTCCTCACC-----------CATCTCTT
CCGCAGCCACAAAATCAAAAATTAAGATTACCACCTAGGAAGCTTGACTACTCTATCGCTGATGTCTTCAATCGTTGGCT
ATTGTTCTAGTGCAACAAGAAGCAGCCTGTACATTAGATAGTACTAGAGGTTCAGTCCTATCGAATGGTGCGTGTACACG
TACAAAAGATTTAGCGAAGGCTTAGACCCTGGAATAGATCGATTGATAAT--GAGCAAAGTTATACACAGCAGTCTAAGC
TAGCTAACTGATCGATTCCATGTGGCCAGAGATACAAGATTATTCCACAACATATCCTAGCATCCAGAGGATGTTCGCGT
GCATGACAAGGCTATAGGCATGC--
>chr2D_2012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------GCTACGTTTGGCTGT
TCAGTATTTTTGAAGTTTTAGGAGAATACCATGGTTTTTATAGAAACCTCAGTTTTAAATACTTTGACATGTTTGGCTTC
GACAAATACTTTAGTTTTACAAACCATGGTATATCTAAAACCATGT-TTTTTTT-GCTGTATCTAAAAAAGCGGTCTCAA
CCTCTTTTTTGTATACTAAGAAACACTAGCTCAAGTCTATCTTCTTCGGGTCCTCCTCACCCATCATTCCTCCATCTCTT
CTGCAGCCACC-------AAATCAAGATTACCACATGGGAAACTTCACTACTCTG----------CTTCAATCGTTGACT
ATTGTGCTAGTGCAACAAGAAGCAGCCCGTACATTAGCTAGTACTAGACGTTCAGTCCTATCAGATGGTGTGTGTACAGA
TACAAAAGATTTAGCGAAGGCTTAGACCCTGGAGTAGATCAATTGATACTTGGAGTAA-CTTATACACAAGAGGCTAAGC
TAGCTAGCCGATTGATTCCATGTGGCCAGAGAAACAAGATTACTCAACAACATATCCTAGCATCGAAAGGATGTTCGCGT
GCATGACAAGGCTATAGGCATGC--
>chr2D_2012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------GCTGTGTTTGGCTAC
TCAGTATTTTTGAAGTTTTAAGAGAATACCATGGTTTTTGGAGAAACCCCAGTTTTAAATACTTTGACGTGTTTGGTTTC
GACAAATACTTTAGTTTTACAAACCGTGGTATATCTAAAACCATGG-TTTTTTT-GCTGTATCTAAAAAAGAGGTCTCAA
CCTCTTTTTTGTAAACTAAGAAACACTTGCTCGAGTCCATCTTCTTCCGGTCCTCCTCACCCATC-----------TCTT
CCGCAGCCACA-------AAATTAAGATTACCACCTAGGAAGCTTGACTACTCTGTCGCTGATGTCTTCAATCGTTGGCT
ATTGTTCTAGTGCAACAAGAAGCAGCCTATACATTAGATAGTACTAGAGGTTCAGTCCTATCGGATGGTGTGTGTACACG
TACAAAAGATTTAGCGAAGGCTTAGACCCTGGAGTAGATCGATTGATAAT--GAGCAAAGTTATACACAACAGTCTAAGC
TAGCTAGCTGATCGATTCCATGTGGCCAGAGATACAAGATTATTCAACAACATATCCTAGCATCTAGAGGATGTTCGCGT
GCATGACAAGGCTATCGGCATGC--
>chr4D_2012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------GCTGTGTTTGGCTGC
TCAGTATTTTTGGAGTTTTAGGAGAATACCATGGTTTTTGTAGAAACCTCAGTTTTAAATACTTTGACGTGTTTGGCTTC
GACAAATACTTTAGTTTTACAAACCGTGGTATATCTAAAACCATGG-TTTTTTT-GCTGTATCTAAAAAAGAGGTCTCGA
CCTCTTTTTTGTAAACTGAGAAACGCTAGCTCAAGTCTATCTTCTTCGGGTCCTCCTCACCCATCATTCCTCCATCTCTT
CTGCAGCCAGC-------AAATCAAGATTACCACATGGGAAACTTTACTACTCTG----------CTTCAATCGTTGACT
ATTGTTCTAGTGCAACAGAAAGCAGCCCGTACATTAGCTAGTACTAGACGTTCAATCTTATCAGATGTGGTGTGTACAGA
TACAAAAGATTTAGCGAAGGCTTACACCCTGGAGTAGATCAATTGATACTTGGAGTAAAGTTATACACATCCGGCTAAGC
TAGCTAGCCGATTGATTCCATGTGGCCAAAGAAACAAGATTACTCAACAACATATCCTA---------------------
-------------------------
>chr4D_2012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GCTGCGTT----TGG
TCAGTATTTTTGGAGTTTTAGGAGAATATCATGGATTTTGTAGAAACCCTTGTTTTAAATATTTTGACGTGTCTGGCTTC
GACACATACTTTAGTTTTACAAACCGAGGTATATCTCAAACCATGG-TTTTTTT-GTTGTATCTAAAAAAGAGGTCTCGA
CCTCTTTTCTGTAAACTGAGAAACACTAGCTCAAGTCTATCTTCTTCGGGTCCTCCTCACCCATCATTCCTCCATCTCTT
CTGCAGCCACC-------AAATAAAGATTACCACATGGGAAACTTCACTACTCTG----------CTTCAATCGTTGACT
ATTGTTCTAGTGCAACAGGAAGCAGCCCGTACATTAGCTAGTACTAGACGTTCAGTCCTAACAGATGGTGTGTGTACAGA
TACAAA-GATTTAGCGAAGGCTTAGACCATGAAGTAGATCAATTGATACTTGGAGCAAAATTATACACAGTAGGCTAAGC
TAGCTAGCCGATTGATTCCATGT-GCCAGAGAAACAAGATTACTCAACAACATATCCTAGCATATAAAGGATGCTCGCGT
GCATGACAAGGCTATAGGCATGC--
>chr1D_2012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GCTGCGTTTGGCTAC
TCAGT-TTTTTGAAGTTTTAAGAGAATACCATGGTTTTTGGAGAAACCCCAGTTTTAAATACTTTGACGTGTTTGGTTTC
GACAAATACTTTAGTTTTACAAACCGTGGTATATCTAAAACCATGTTTTTTTTT-GCTGTATCTAAAAAAGAGGTCTCAA
CCTCTTTTTTGTAAACTGAGAAACACTTGCTCGAGTCCATCTTCTTCCGGTCCTCCTCACCCATC-----------TCTT
CCGCAGCCACA-------AAATTAAGATTACCACCTAGGAAGCTTGATTACTCTGTCGCTGATGTCTTCAATCGTTGGCT
ATTGTTCTAGTGCAACAAGAAGCAGCCTGTACATTAGATAGTACTAGAGGTTCAGTCCTACCGGATGGTGCGTGTACACG
TACAAAAGATTTAGCGAAGGCTTAGACCCTGGAGTAGATCGATTGATAAT--GAGCAAAGTTATACACAGCAGTCTAAGC
TAGCTAGCTGATCGATTCCATGTGACCAGAGATACAAGATTATTCAACAACATATCCTAGCATCTAGAGGATGTTCGCGT
GCATGACAAGGCTATAGGCATGC--
>chr6D_2012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GCTGCGTTTGGCTAC
TCAGTATTTTTGAAGTTTTAAGAGAATACCATGGTTTTTGGAGAAACCCCGGTTTTAAATACTTTAACGTGTTTGGTTTC
GATAAATATTTTAGTTTTACAAACCGTGGTATATCTAAAACCATGG-TTTTTTT-GCTGTATCTAAAAAAGAGGTCTCAA
CCTCTTTTTT-TAAACTGAGAAACACTTGCTCGAGTCCATCTTCTTCCGGTCCTCCTCACCCATC-----------TCTT
CTGCAGCCACA-------AAATTAAGATTACCACCTAGGAAGCTTGACTACTCTGTCGCTGATGTCTTCAATCGTTGGCT
ATTGTTCTAGTGCAACAAGAAGCAGCCTGTACATTAGATAGTACTAGAGGTTCAGTCCTATCGGATGGTGCGTGTACACG
TACAAAAGATTTAGCGAAGGCTTAGACCCTGGAGTAGATCGATTGATAAT--GAGCAAAGTTATACACAGCAGTCTAAGC
TAGCTAGCTGATCGATTCCATGTGGCCAGAGATACAAGATTATTCAACAACATATCCTAGCATCTAGAGGATGTTCGCGT
GCATGACAAGGCTATATAGGCATGC
>chr2D_2063
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------TTTGGAGAAACCCCAGTTTTAAATACTTTGACGTGTTTGGTTTC
GACAAATACTTTAGTTTTACAAACCGTGGTATATCTAAAACCATGGGTTTTTTT-GATGTATCTAAAAAAGAGGTCTCAA
CCTCTTTTTTGTAAACTGAGAAACACTTGCTCGAGTCCATCTTTTTCCGGTCCTCCTCACCCATC-----------TCTT
CCGCAGCCACA-------AAATTAAGATTACCACCTAGGAAGCTTGACTACTCTGTCGCTGATGTCTTCAATCGTTGGCT
ATTGTTCTAGTGCAACAAGAAGCAGCCTGTACATTAGATAGTACTAGAGGTTCAGTCCTATCGGATGGTGCGTGTACACC
TACAAAAGATTTAGCGAAGGCTTAGACCCTGGAGTAGATCGATTGATAAT--GAGCAAAGTTATACACAGCAGTCTAAGC
TAGCTAGCTGATCGATTCCATGTGGCCAGAGATACAAGATTATTCAACAACATATCCTAGCATCTAGAGGATGTTCGCGT
GCATGACAAGGCTATAGGCATGC--
>SNPs
-----S------------SSS--S-SSSSSS-----S----------------------------------------S--
-----------SSSSSSSS------------------------------S---------------SS-------------
-----S--------------------------------------------------------------------------
----------------------------S---------------------------------------------------
S------------------------------S--S---------------------------------------S-----
-------------------------------S------------------------------------------------
-----------------------------------S--------S---------------SS------------SS----
-SS---------SSSS-SS-S--SSS-SSSSS-S------------------------------------------S-S-
---S------------SS--------------------S------S-S-------------S-------S--------S-
-----------------------S-S---S-------------S-----------S------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S---------------------SS-------------S-------------
--------------------S---------------------S-------------------------------------
----------------------------------------------------------S---------------------
---------------------------------------------------------------------------S----
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
------SS------------------------------------------------------------------------
---------------------------------------------S----------------------------------
------------S-------------------------------------------------------------------
-S-----S---------------------------------------------S--------------------------
--S------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
-S-----------------------SSSSSSSSSSSSSSS---------S-----------S------------SS----
------------------------------------------------------------------SSSSSSS-------
----------------------------------------------------------S---------------------
--------------S-----------------S--------S--------------------------------------
------------------S-------------------------------------------------------------
------------------------------------------------S-------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------S--------------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_594
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CGTTAGGCCCACTTACCAGG----------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------
>reverse_1613
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CACGCAGCAGACAGTTGTTAG-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_657
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GGT
GATTGGCGATGCGAAAA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>reverse_1734
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CACGAGTGATGAAACGCTCA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
