Multiple sequence alignment - TraesCS7D01G229200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G229200 chr7D 100.000 2477 0 0 1 2477 189312111 189309635 0.000000e+00 4575.0
1 TraesCS7D01G229200 chr7B 93.391 1498 58 18 283 1772 334302221 334300757 0.000000e+00 2180.0
2 TraesCS7D01G229200 chr7B 96.154 52 0 2 1760 1809 334300801 334300750 1.580000e-12 84.2
3 TraesCS7D01G229200 chr7A 92.324 1394 58 25 393 1772 194457984 194459342 0.000000e+00 1936.0
4 TraesCS7D01G229200 chr7A 81.129 567 101 6 1913 2476 237502172 237501609 1.350000e-122 449.0
5 TraesCS7D01G229200 chr2A 92.285 337 25 1 1810 2146 200842950 200843285 6.200000e-131 477.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G229200 chr7D 189309635 189312111 2476 True 4575.0 4575 100.0000 1 2477 1 chr7D.!!$R1 2476
1 TraesCS7D01G229200 chr7B 334300750 334302221 1471 True 1132.1 2180 94.7725 283 1809 2 chr7B.!!$R1 1526
2 TraesCS7D01G229200 chr7A 194457984 194459342 1358 False 1936.0 1936 92.3240 393 1772 1 chr7A.!!$F1 1379
3 TraesCS7D01G229200 chr7A 237501609 237502172 563 True 449.0 449 81.1290 1913 2476 1 chr7A.!!$R1 563


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.028374 GGTTTGTCGGGTTCAACGTG 59.972 55.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 1830 0.109873 ACGCCTTTGTCGTACTCTCG 60.11 55.0 0.0 0.0 38.52 4.04 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.170584 GACTGACAAAAATGCTTTAGTAAAGAC 57.829 33.333 23.89 15.64 41.02 3.01
27 28 7.855904 ACTGACAAAAATGCTTTAGTAAAGACG 59.144 33.333 23.89 1.78 41.02 4.18
28 29 6.635239 TGACAAAAATGCTTTAGTAAAGACGC 59.365 34.615 23.89 11.69 41.02 5.19
29 30 6.500041 ACAAAAATGCTTTAGTAAAGACGCA 58.500 32.000 23.89 16.44 41.02 5.24
30 31 6.636850 ACAAAAATGCTTTAGTAAAGACGCAG 59.363 34.615 23.89 10.34 41.02 5.18
31 32 6.554334 AAAATGCTTTAGTAAAGACGCAGA 57.446 33.333 23.89 2.97 41.02 4.26
32 33 6.554334 AAATGCTTTAGTAAAGACGCAGAA 57.446 33.333 23.89 0.00 41.02 3.02
33 34 5.786401 ATGCTTTAGTAAAGACGCAGAAG 57.214 39.130 23.89 0.00 41.02 2.85
34 35 3.994392 TGCTTTAGTAAAGACGCAGAAGG 59.006 43.478 23.89 0.00 41.02 3.46
35 36 4.243270 GCTTTAGTAAAGACGCAGAAGGA 58.757 43.478 23.89 0.00 41.02 3.36
36 37 4.327627 GCTTTAGTAAAGACGCAGAAGGAG 59.672 45.833 23.89 0.00 41.02 3.69
37 38 4.451629 TTAGTAAAGACGCAGAAGGAGG 57.548 45.455 0.00 0.00 0.00 4.30
38 39 1.550976 AGTAAAGACGCAGAAGGAGGG 59.449 52.381 0.00 0.00 0.00 4.30
39 40 0.249398 TAAAGACGCAGAAGGAGGGC 59.751 55.000 0.00 0.00 0.00 5.19
44 45 3.819188 GCAGAAGGAGGGCGATTG 58.181 61.111 0.00 0.00 0.00 2.67
45 46 1.078143 GCAGAAGGAGGGCGATTGT 60.078 57.895 0.00 0.00 0.00 2.71
46 47 0.678048 GCAGAAGGAGGGCGATTGTT 60.678 55.000 0.00 0.00 0.00 2.83
47 48 1.826385 CAGAAGGAGGGCGATTGTTT 58.174 50.000 0.00 0.00 0.00 2.83
48 49 2.162681 CAGAAGGAGGGCGATTGTTTT 58.837 47.619 0.00 0.00 0.00 2.43
49 50 2.095059 CAGAAGGAGGGCGATTGTTTTG 60.095 50.000 0.00 0.00 0.00 2.44
50 51 1.202348 GAAGGAGGGCGATTGTTTTGG 59.798 52.381 0.00 0.00 0.00 3.28
51 52 0.112412 AGGAGGGCGATTGTTTTGGT 59.888 50.000 0.00 0.00 0.00 3.67
52 53 0.243636 GGAGGGCGATTGTTTTGGTG 59.756 55.000 0.00 0.00 0.00 4.17
53 54 0.243636 GAGGGCGATTGTTTTGGTGG 59.756 55.000 0.00 0.00 0.00 4.61
54 55 0.178975 AGGGCGATTGTTTTGGTGGA 60.179 50.000 0.00 0.00 0.00 4.02
55 56 0.894835 GGGCGATTGTTTTGGTGGAT 59.105 50.000 0.00 0.00 0.00 3.41
56 57 1.275010 GGGCGATTGTTTTGGTGGATT 59.725 47.619 0.00 0.00 0.00 3.01
57 58 2.289382 GGGCGATTGTTTTGGTGGATTT 60.289 45.455 0.00 0.00 0.00 2.17
58 59 2.736192 GGCGATTGTTTTGGTGGATTTG 59.264 45.455 0.00 0.00 0.00 2.32
59 60 3.553922 GGCGATTGTTTTGGTGGATTTGA 60.554 43.478 0.00 0.00 0.00 2.69
60 61 4.244862 GCGATTGTTTTGGTGGATTTGAT 58.755 39.130 0.00 0.00 0.00 2.57
61 62 4.327087 GCGATTGTTTTGGTGGATTTGATC 59.673 41.667 0.00 0.00 0.00 2.92
62 63 5.468592 CGATTGTTTTGGTGGATTTGATCA 58.531 37.500 0.00 0.00 0.00 2.92
63 64 5.925397 CGATTGTTTTGGTGGATTTGATCAA 59.075 36.000 3.38 3.38 0.00 2.57
64 65 6.591062 CGATTGTTTTGGTGGATTTGATCAAT 59.409 34.615 9.40 0.00 0.00 2.57
65 66 7.118101 CGATTGTTTTGGTGGATTTGATCAATT 59.882 33.333 9.40 5.69 0.00 2.32
66 67 8.694581 ATTGTTTTGGTGGATTTGATCAATTT 57.305 26.923 9.40 0.00 0.00 1.82
67 68 8.517062 TTGTTTTGGTGGATTTGATCAATTTT 57.483 26.923 9.40 0.00 0.00 1.82
68 69 8.517062 TGTTTTGGTGGATTTGATCAATTTTT 57.483 26.923 9.40 0.00 0.00 1.94
69 70 9.618890 TGTTTTGGTGGATTTGATCAATTTTTA 57.381 25.926 9.40 0.00 0.00 1.52
89 90 9.816354 ATTTTTATGAAATTTATGAAGGTCCGG 57.184 29.630 0.00 0.00 0.00 5.14
90 91 7.948034 TTTATGAAATTTATGAAGGTCCGGT 57.052 32.000 0.00 0.00 0.00 5.28
91 92 7.948034 TTATGAAATTTATGAAGGTCCGGTT 57.052 32.000 0.00 0.00 0.00 4.44
92 93 6.850752 ATGAAATTTATGAAGGTCCGGTTT 57.149 33.333 0.00 0.00 0.00 3.27
93 94 6.019779 TGAAATTTATGAAGGTCCGGTTTG 57.980 37.500 0.00 0.00 0.00 2.93
94 95 5.536916 TGAAATTTATGAAGGTCCGGTTTGT 59.463 36.000 0.00 0.00 0.00 2.83
95 96 5.638596 AATTTATGAAGGTCCGGTTTGTC 57.361 39.130 0.00 0.00 0.00 3.18
96 97 2.373540 TATGAAGGTCCGGTTTGTCG 57.626 50.000 0.00 0.00 0.00 4.35
103 104 4.144418 CCGGTTTGTCGGGTTCAA 57.856 55.556 0.00 0.00 45.78 2.69
104 105 1.650363 CCGGTTTGTCGGGTTCAAC 59.350 57.895 0.00 0.00 45.78 3.18
105 106 1.277440 CGGTTTGTCGGGTTCAACG 59.723 57.895 0.00 0.00 0.00 4.10
106 107 1.430707 CGGTTTGTCGGGTTCAACGT 61.431 55.000 0.00 0.00 0.00 3.99
107 108 0.028374 GGTTTGTCGGGTTCAACGTG 59.972 55.000 0.00 0.00 0.00 4.49
108 109 1.008329 GTTTGTCGGGTTCAACGTGA 58.992 50.000 0.00 0.00 0.00 4.35
109 110 1.008329 TTTGTCGGGTTCAACGTGAC 58.992 50.000 4.29 4.29 0.00 3.67
110 111 0.108281 TTGTCGGGTTCAACGTGACA 60.108 50.000 8.88 8.88 37.76 3.58
111 112 0.528901 TGTCGGGTTCAACGTGACAG 60.529 55.000 8.88 0.00 34.85 3.51
112 113 0.249155 GTCGGGTTCAACGTGACAGA 60.249 55.000 6.03 0.00 0.00 3.41
113 114 0.249155 TCGGGTTCAACGTGACAGAC 60.249 55.000 0.00 0.00 0.00 3.51
121 122 4.379143 CGTGACAGACGCGTCCGA 62.379 66.667 34.08 13.87 45.77 4.55
122 123 2.502080 GTGACAGACGCGTCCGAG 60.502 66.667 34.08 25.50 38.29 4.63
123 124 4.400109 TGACAGACGCGTCCGAGC 62.400 66.667 34.08 21.14 38.29 5.03
139 140 3.818787 GCGCGTCCGGACCTTCTA 61.819 66.667 28.52 0.00 34.32 2.10
140 141 3.117372 CGCGTCCGGACCTTCTAT 58.883 61.111 28.52 0.00 0.00 1.98
141 142 1.789078 GCGCGTCCGGACCTTCTATA 61.789 60.000 28.52 0.00 34.32 1.31
142 143 0.879765 CGCGTCCGGACCTTCTATAT 59.120 55.000 28.52 0.00 0.00 0.86
143 144 1.135746 CGCGTCCGGACCTTCTATATC 60.136 57.143 28.52 0.00 0.00 1.63
144 145 1.201880 GCGTCCGGACCTTCTATATCC 59.798 57.143 28.52 0.00 0.00 2.59
151 152 4.116747 GGACCTTCTATATCCGCATCAG 57.883 50.000 0.00 0.00 0.00 2.90
152 153 3.764434 GGACCTTCTATATCCGCATCAGA 59.236 47.826 0.00 0.00 0.00 3.27
153 154 4.404073 GGACCTTCTATATCCGCATCAGAT 59.596 45.833 0.00 0.00 0.00 2.90
154 155 5.336150 ACCTTCTATATCCGCATCAGATG 57.664 43.478 5.98 5.98 0.00 2.90
155 156 4.774726 ACCTTCTATATCCGCATCAGATGT 59.225 41.667 12.18 0.00 0.00 3.06
156 157 5.952347 ACCTTCTATATCCGCATCAGATGTA 59.048 40.000 12.18 0.00 0.00 2.29
157 158 6.437477 ACCTTCTATATCCGCATCAGATGTAA 59.563 38.462 12.18 0.00 0.00 2.41
158 159 6.977502 CCTTCTATATCCGCATCAGATGTAAG 59.022 42.308 12.18 4.32 0.00 2.34
159 160 5.895928 TCTATATCCGCATCAGATGTAAGC 58.104 41.667 12.18 0.00 0.00 3.09
160 161 4.815533 ATATCCGCATCAGATGTAAGCT 57.184 40.909 12.18 0.00 0.00 3.74
179 180 9.645059 TGTAAGCTGAATATATATGAAGAGTGC 57.355 33.333 0.00 0.00 0.00 4.40
180 181 9.092876 GTAAGCTGAATATATATGAAGAGTGCC 57.907 37.037 0.00 0.00 0.00 5.01
181 182 6.336566 AGCTGAATATATATGAAGAGTGCCG 58.663 40.000 0.00 0.00 0.00 5.69
182 183 5.521735 GCTGAATATATATGAAGAGTGCCGG 59.478 44.000 0.00 0.00 0.00 6.13
183 184 6.605471 TGAATATATATGAAGAGTGCCGGT 57.395 37.500 1.90 0.00 0.00 5.28
184 185 7.004555 TGAATATATATGAAGAGTGCCGGTT 57.995 36.000 1.90 0.00 0.00 4.44
185 186 8.129496 TGAATATATATGAAGAGTGCCGGTTA 57.871 34.615 1.90 0.00 0.00 2.85
186 187 8.590204 TGAATATATATGAAGAGTGCCGGTTAA 58.410 33.333 1.90 0.00 0.00 2.01
187 188 9.088512 GAATATATATGAAGAGTGCCGGTTAAG 57.911 37.037 1.90 0.00 0.00 1.85
188 189 1.739067 ATGAAGAGTGCCGGTTAAGC 58.261 50.000 1.90 0.00 0.00 3.09
189 190 0.321298 TGAAGAGTGCCGGTTAAGCC 60.321 55.000 1.90 0.00 0.00 4.35
201 202 3.169355 GGTTAAGCCGGACGAATAAGA 57.831 47.619 5.05 0.00 0.00 2.10
202 203 2.862536 GGTTAAGCCGGACGAATAAGAC 59.137 50.000 5.05 0.00 0.00 3.01
203 204 2.862536 GTTAAGCCGGACGAATAAGACC 59.137 50.000 5.05 0.00 0.00 3.85
204 205 0.179119 AAGCCGGACGAATAAGACCG 60.179 55.000 5.05 0.00 46.05 4.79
207 208 3.727419 CGGACGAATAAGACCGGTT 57.273 52.632 9.42 0.00 43.60 4.44
208 209 2.000429 CGGACGAATAAGACCGGTTT 58.000 50.000 9.42 0.00 43.60 3.27
209 210 1.657094 CGGACGAATAAGACCGGTTTG 59.343 52.381 9.42 0.00 43.60 2.93
210 211 2.671914 CGGACGAATAAGACCGGTTTGA 60.672 50.000 9.42 0.00 43.60 2.69
211 212 3.328505 GGACGAATAAGACCGGTTTGAA 58.671 45.455 9.42 0.00 0.00 2.69
212 213 3.370061 GGACGAATAAGACCGGTTTGAAG 59.630 47.826 9.42 0.00 0.00 3.02
213 214 4.240096 GACGAATAAGACCGGTTTGAAGA 58.760 43.478 9.42 0.00 0.00 2.87
214 215 4.243270 ACGAATAAGACCGGTTTGAAGAG 58.757 43.478 9.42 1.39 0.00 2.85
215 216 3.617263 CGAATAAGACCGGTTTGAAGAGG 59.383 47.826 9.42 0.00 0.00 3.69
216 217 2.467566 TAAGACCGGTTTGAAGAGGC 57.532 50.000 9.42 0.00 0.00 4.70
217 218 0.250770 AAGACCGGTTTGAAGAGGCC 60.251 55.000 9.42 0.00 0.00 5.19
218 219 2.032071 ACCGGTTTGAAGAGGCCG 59.968 61.111 0.00 0.00 43.40 6.13
220 221 3.431725 CGGTTTGAAGAGGCCGGC 61.432 66.667 21.18 21.18 40.45 6.13
221 222 2.034221 GGTTTGAAGAGGCCGGCT 59.966 61.111 28.56 12.77 0.00 5.52
222 223 1.298667 GGTTTGAAGAGGCCGGCTA 59.701 57.895 28.56 3.08 0.00 3.93
223 224 0.744771 GGTTTGAAGAGGCCGGCTAG 60.745 60.000 28.56 0.00 0.00 3.42
224 225 0.249398 GTTTGAAGAGGCCGGCTAGA 59.751 55.000 28.56 1.37 0.00 2.43
225 226 1.134371 GTTTGAAGAGGCCGGCTAGAT 60.134 52.381 28.56 10.94 0.00 1.98
226 227 0.753262 TTGAAGAGGCCGGCTAGATC 59.247 55.000 28.56 19.50 0.00 2.75
227 228 1.287503 GAAGAGGCCGGCTAGATCG 59.712 63.158 28.56 0.00 0.00 3.69
228 229 2.757155 GAAGAGGCCGGCTAGATCGC 62.757 65.000 28.56 11.08 0.00 4.58
229 230 4.708968 GAGGCCGGCTAGATCGCG 62.709 72.222 28.56 0.00 0.00 5.87
231 232 4.057428 GGCCGGCTAGATCGCGAT 62.057 66.667 28.56 23.97 0.00 4.58
232 233 2.049063 GCCGGCTAGATCGCGATT 60.049 61.111 24.55 15.09 0.00 3.34
233 234 1.664965 GCCGGCTAGATCGCGATTT 60.665 57.895 24.55 20.48 0.00 2.17
234 235 1.222115 GCCGGCTAGATCGCGATTTT 61.222 55.000 24.55 16.77 0.00 1.82
235 236 1.933500 GCCGGCTAGATCGCGATTTTA 60.934 52.381 24.55 17.00 0.00 1.52
236 237 2.607187 CCGGCTAGATCGCGATTTTAT 58.393 47.619 24.55 12.15 0.00 1.40
237 238 2.345641 CCGGCTAGATCGCGATTTTATG 59.654 50.000 24.55 12.00 0.00 1.90
238 239 3.242518 CGGCTAGATCGCGATTTTATGA 58.757 45.455 24.55 1.02 0.00 2.15
239 240 3.059570 CGGCTAGATCGCGATTTTATGAC 59.940 47.826 24.55 12.14 0.00 3.06
240 241 3.368236 GGCTAGATCGCGATTTTATGACC 59.632 47.826 24.55 14.24 0.00 4.02
241 242 3.059570 GCTAGATCGCGATTTTATGACCG 59.940 47.826 24.55 7.95 0.00 4.79
242 243 2.404215 AGATCGCGATTTTATGACCGG 58.596 47.619 24.55 0.00 0.00 5.28
243 244 2.132762 GATCGCGATTTTATGACCGGT 58.867 47.619 24.55 6.92 0.00 5.28
244 245 1.563111 TCGCGATTTTATGACCGGTC 58.437 50.000 28.17 28.17 0.00 4.79
245 246 1.135053 TCGCGATTTTATGACCGGTCA 60.135 47.619 37.79 37.79 44.59 4.02
246 247 1.005347 CGCGATTTTATGACCGGTCAC 60.005 52.381 38.46 23.09 43.11 3.67
247 248 2.277084 GCGATTTTATGACCGGTCACT 58.723 47.619 38.46 27.11 43.11 3.41
248 249 2.030457 GCGATTTTATGACCGGTCACTG 59.970 50.000 38.46 21.98 43.11 3.66
249 250 3.517602 CGATTTTATGACCGGTCACTGA 58.482 45.455 38.46 23.62 43.11 3.41
250 251 3.306166 CGATTTTATGACCGGTCACTGAC 59.694 47.826 38.46 23.94 43.11 3.51
251 252 3.755112 TTTTATGACCGGTCACTGACA 57.245 42.857 38.46 18.97 43.11 3.58
252 253 3.313012 TTTATGACCGGTCACTGACAG 57.687 47.619 38.46 6.91 43.11 3.51
256 257 3.694746 CCGGTCACTGACAGGCTA 58.305 61.111 14.50 0.00 40.54 3.93
257 258 2.202866 CCGGTCACTGACAGGCTAT 58.797 57.895 14.50 0.00 40.54 2.97
258 259 0.103208 CCGGTCACTGACAGGCTATC 59.897 60.000 14.50 0.00 40.54 2.08
259 260 0.103208 CGGTCACTGACAGGCTATCC 59.897 60.000 11.34 1.48 33.68 2.59
260 261 1.195115 GGTCACTGACAGGCTATCCA 58.805 55.000 11.34 0.00 33.68 3.41
261 262 1.134670 GGTCACTGACAGGCTATCCAC 60.135 57.143 11.34 0.00 33.68 4.02
262 263 1.134670 GTCACTGACAGGCTATCCACC 60.135 57.143 7.51 0.00 32.09 4.61
263 264 0.179000 CACTGACAGGCTATCCACCC 59.821 60.000 7.51 0.00 33.74 4.61
264 265 1.330655 ACTGACAGGCTATCCACCCG 61.331 60.000 7.51 0.00 33.74 5.28
265 266 2.032860 CTGACAGGCTATCCACCCGG 62.033 65.000 0.00 0.00 33.74 5.73
267 268 2.029307 GACAGGCTATCCACCCGGAC 62.029 65.000 0.73 0.00 46.79 4.79
268 269 2.838225 AGGCTATCCACCCGGACG 60.838 66.667 0.73 0.00 46.79 4.79
269 270 3.152400 GGCTATCCACCCGGACGT 61.152 66.667 0.73 0.00 46.79 4.34
270 271 1.829533 GGCTATCCACCCGGACGTA 60.830 63.158 0.73 0.00 46.79 3.57
271 272 1.183676 GGCTATCCACCCGGACGTAT 61.184 60.000 0.73 0.00 46.79 3.06
272 273 1.538047 GCTATCCACCCGGACGTATA 58.462 55.000 0.73 0.00 46.79 1.47
273 274 1.888512 GCTATCCACCCGGACGTATAA 59.111 52.381 0.73 0.00 46.79 0.98
274 275 2.297033 GCTATCCACCCGGACGTATAAA 59.703 50.000 0.73 0.00 46.79 1.40
275 276 3.613432 GCTATCCACCCGGACGTATAAAG 60.613 52.174 0.73 0.00 46.79 1.85
276 277 1.851304 TCCACCCGGACGTATAAAGT 58.149 50.000 0.73 0.00 35.91 2.66
277 278 1.477700 TCCACCCGGACGTATAAAGTG 59.522 52.381 0.73 0.00 35.91 3.16
278 279 1.283736 CACCCGGACGTATAAAGTGC 58.716 55.000 0.73 0.00 0.00 4.40
279 280 0.896923 ACCCGGACGTATAAAGTGCA 59.103 50.000 0.73 0.00 0.00 4.57
280 281 1.483415 ACCCGGACGTATAAAGTGCAT 59.517 47.619 0.73 0.00 0.00 3.96
281 282 1.864711 CCCGGACGTATAAAGTGCATG 59.135 52.381 0.73 0.00 0.00 4.06
305 306 3.181483 GGAGCCCAACTTGAAATGCTATG 60.181 47.826 0.00 0.00 0.00 2.23
314 315 8.246180 CCAACTTGAAATGCTATGAACATAAGT 58.754 33.333 0.00 0.00 29.38 2.24
326 327 7.166142 GCTATGAACATAAGTTACTCGTGTCTC 59.834 40.741 0.00 5.01 38.30 3.36
384 385 2.433436 CCAACAACCTTACCTAGTGGC 58.567 52.381 0.00 0.00 36.63 5.01
409 410 0.235926 GTCCAGCTGCTGTCGTTTTC 59.764 55.000 26.41 6.55 0.00 2.29
448 449 2.135933 CCAGTGAACTCGAAGTGGAAC 58.864 52.381 2.99 0.00 38.93 3.62
450 451 1.760613 AGTGAACTCGAAGTGGAACCA 59.239 47.619 0.00 0.00 37.80 3.67
451 452 1.865340 GTGAACTCGAAGTGGAACCAC 59.135 52.381 15.25 15.25 46.50 4.16
460 461 3.139029 GTGGAACCACGGACATCTC 57.861 57.895 8.25 0.00 37.19 2.75
461 462 0.320374 GTGGAACCACGGACATCTCA 59.680 55.000 8.25 0.00 37.19 3.27
463 464 1.270625 TGGAACCACGGACATCTCAAC 60.271 52.381 0.00 0.00 0.00 3.18
464 465 1.068474 GAACCACGGACATCTCAACG 58.932 55.000 0.00 0.00 0.00 4.10
465 466 0.949105 AACCACGGACATCTCAACGC 60.949 55.000 0.00 0.00 0.00 4.84
466 467 1.374125 CCACGGACATCTCAACGCA 60.374 57.895 0.00 0.00 0.00 5.24
467 468 1.626654 CCACGGACATCTCAACGCAC 61.627 60.000 0.00 0.00 0.00 5.34
468 469 1.733041 ACGGACATCTCAACGCACG 60.733 57.895 0.00 0.00 0.00 5.34
469 470 2.778679 GGACATCTCAACGCACGC 59.221 61.111 0.00 0.00 0.00 5.34
470 471 2.391821 GACATCTCAACGCACGCG 59.608 61.111 10.36 10.36 46.03 6.01
495 496 2.669569 GCGCACCAAAGAGGCTCA 60.670 61.111 18.26 0.00 43.14 4.26
496 497 2.042831 GCGCACCAAAGAGGCTCAT 61.043 57.895 18.26 0.57 43.14 2.90
497 498 0.744414 GCGCACCAAAGAGGCTCATA 60.744 55.000 18.26 0.00 43.14 2.15
498 499 1.959042 CGCACCAAAGAGGCTCATAT 58.041 50.000 18.26 0.00 43.14 1.78
499 500 2.292267 CGCACCAAAGAGGCTCATATT 58.708 47.619 18.26 5.84 43.14 1.28
501 502 2.620585 GCACCAAAGAGGCTCATATTCC 59.379 50.000 18.26 0.00 43.14 3.01
502 503 3.889815 CACCAAAGAGGCTCATATTCCA 58.110 45.455 18.26 0.00 43.14 3.53
513 514 1.768275 TCATATTCCACTCCACCGCAT 59.232 47.619 0.00 0.00 0.00 4.73
689 690 4.379918 GCCTGTACATGCTTTTCTCCTTTC 60.380 45.833 15.04 0.00 0.00 2.62
736 737 3.576078 TTAATCAATCCCGCCATGTCT 57.424 42.857 0.00 0.00 0.00 3.41
930 934 4.642445 ACATGTATACGTGTTGATCGGA 57.358 40.909 22.40 0.00 43.01 4.55
997 1001 1.006519 AGAGGGAAGCTAGAGCAGTGA 59.993 52.381 4.01 0.00 45.16 3.41
1000 1004 1.759445 GGGAAGCTAGAGCAGTGATCA 59.241 52.381 11.60 0.00 45.16 2.92
1008 1012 1.214673 AGAGCAGTGATCATGGCCATT 59.785 47.619 17.92 1.37 0.00 3.16
1200 1210 2.967946 GCTTACCAGGGGGCTCGTT 61.968 63.158 0.00 0.00 37.90 3.85
1256 1269 1.741525 GCAACAAGAAAGGGCAGCA 59.258 52.632 0.00 0.00 0.00 4.41
1486 1499 1.296715 GCCACGTGAAGATCCACCT 59.703 57.895 19.30 0.00 33.67 4.00
1642 1655 7.596749 TGCTTTTCTATGTTCTAGCAAGTAC 57.403 36.000 0.00 0.00 35.86 2.73
1745 1759 6.597280 GCCACTTGATCTATCTTCTGTTTTCT 59.403 38.462 0.00 0.00 0.00 2.52
1746 1760 7.201600 GCCACTTGATCTATCTTCTGTTTTCTC 60.202 40.741 0.00 0.00 0.00 2.87
1747 1761 8.040132 CCACTTGATCTATCTTCTGTTTTCTCT 58.960 37.037 0.00 0.00 0.00 3.10
1748 1762 9.434420 CACTTGATCTATCTTCTGTTTTCTCTT 57.566 33.333 0.00 0.00 0.00 2.85
1809 1823 8.510505 GTTGAATCTATCTTCTGTTGAAAGCTT 58.489 33.333 0.00 0.00 0.00 3.74
1810 1824 8.627208 TGAATCTATCTTCTGTTGAAAGCTTT 57.373 30.769 12.53 12.53 0.00 3.51
1811 1825 9.071276 TGAATCTATCTTCTGTTGAAAGCTTTT 57.929 29.630 14.05 0.00 0.00 2.27
1812 1826 9.905171 GAATCTATCTTCTGTTGAAAGCTTTTT 57.095 29.630 14.05 0.00 0.00 1.94
1833 1847 2.342910 TTCGAGAGTACGACAAAGGC 57.657 50.000 0.00 0.00 41.97 4.35
1834 1848 0.167470 TCGAGAGTACGACAAAGGCG 59.833 55.000 0.00 0.00 37.37 5.52
1835 1849 0.109873 CGAGAGTACGACAAAGGCGT 60.110 55.000 2.57 2.57 45.01 5.68
1836 1850 1.129251 CGAGAGTACGACAAAGGCGTA 59.871 52.381 0.24 0.24 42.62 4.42
1837 1851 2.223203 CGAGAGTACGACAAAGGCGTAT 60.223 50.000 8.47 0.00 44.73 3.06
1838 1852 3.361414 GAGAGTACGACAAAGGCGTATC 58.639 50.000 8.47 7.39 44.73 2.24
1839 1853 2.751259 AGAGTACGACAAAGGCGTATCA 59.249 45.455 8.47 0.00 44.73 2.15
1840 1854 3.380637 AGAGTACGACAAAGGCGTATCAT 59.619 43.478 8.47 0.00 44.73 2.45
1841 1855 4.577693 AGAGTACGACAAAGGCGTATCATA 59.422 41.667 8.47 0.00 44.73 2.15
1842 1856 5.241064 AGAGTACGACAAAGGCGTATCATAT 59.759 40.000 8.47 0.00 44.73 1.78
1843 1857 5.839621 AGTACGACAAAGGCGTATCATATT 58.160 37.500 8.47 0.00 44.73 1.28
1844 1858 6.278363 AGTACGACAAAGGCGTATCATATTT 58.722 36.000 8.47 0.00 44.73 1.40
1845 1859 6.759827 AGTACGACAAAGGCGTATCATATTTT 59.240 34.615 8.47 0.00 44.73 1.82
1846 1860 6.431198 ACGACAAAGGCGTATCATATTTTT 57.569 33.333 0.00 0.00 40.65 1.94
1847 1861 7.542534 ACGACAAAGGCGTATCATATTTTTA 57.457 32.000 0.00 0.00 40.65 1.52
1848 1862 8.149973 ACGACAAAGGCGTATCATATTTTTAT 57.850 30.769 0.00 0.00 40.65 1.40
1849 1863 9.263538 ACGACAAAGGCGTATCATATTTTTATA 57.736 29.630 0.00 0.00 40.65 0.98
1850 1864 9.741168 CGACAAAGGCGTATCATATTTTTATAG 57.259 33.333 0.00 0.00 0.00 1.31
1875 1889 9.262358 AGAAGTCAGAAAGTTATGTACAAGAAC 57.738 33.333 13.52 13.52 0.00 3.01
1876 1890 9.262358 GAAGTCAGAAAGTTATGTACAAGAACT 57.738 33.333 16.78 16.78 34.92 3.01
1877 1891 9.614792 AAGTCAGAAAGTTATGTACAAGAACTT 57.385 29.630 23.60 23.60 43.49 2.66
1878 1892 9.046296 AGTCAGAAAGTTATGTACAAGAACTTG 57.954 33.333 27.14 20.00 41.39 3.16
1879 1893 7.798982 GTCAGAAAGTTATGTACAAGAACTTGC 59.201 37.037 27.14 25.82 41.39 4.01
1880 1894 6.792250 CAGAAAGTTATGTACAAGAACTTGCG 59.208 38.462 27.14 20.36 41.68 4.85
1881 1895 6.482308 AGAAAGTTATGTACAAGAACTTGCGT 59.518 34.615 27.14 17.86 41.68 5.24
1882 1896 5.591643 AGTTATGTACAAGAACTTGCGTG 57.408 39.130 16.78 0.00 44.03 5.34
1883 1897 2.969443 ATGTACAAGAACTTGCGTGC 57.031 45.000 13.50 1.43 44.03 5.34
1884 1898 0.579630 TGTACAAGAACTTGCGTGCG 59.420 50.000 13.50 0.00 44.03 5.34
1885 1899 0.856641 GTACAAGAACTTGCGTGCGA 59.143 50.000 13.50 0.00 44.03 5.10
1886 1900 1.459592 GTACAAGAACTTGCGTGCGAT 59.540 47.619 13.50 0.00 44.03 4.58
1887 1901 0.235665 ACAAGAACTTGCGTGCGATG 59.764 50.000 13.50 0.00 44.03 3.84
1888 1902 1.061799 CAAGAACTTGCGTGCGATGC 61.062 55.000 1.60 0.00 33.45 3.91
1889 1903 2.498761 AAGAACTTGCGTGCGATGCG 62.499 55.000 0.00 0.00 31.36 4.73
1890 1904 3.010585 GAACTTGCGTGCGATGCGA 62.011 57.895 0.00 0.00 31.36 5.10
1891 1905 2.493088 GAACTTGCGTGCGATGCGAA 62.493 55.000 0.00 0.00 31.36 4.70
1892 1906 2.571611 CTTGCGTGCGATGCGAAC 60.572 61.111 0.00 0.00 31.36 3.95
1893 1907 3.293872 CTTGCGTGCGATGCGAACA 62.294 57.895 0.00 0.00 34.66 3.18
1894 1908 3.571959 TTGCGTGCGATGCGAACAC 62.572 57.895 0.00 0.00 34.66 3.32
1895 1909 4.794241 GCGTGCGATGCGAACACC 62.794 66.667 0.00 0.00 34.66 4.16
1896 1910 4.147322 CGTGCGATGCGAACACCC 62.147 66.667 0.00 0.00 34.66 4.61
1897 1911 3.047280 GTGCGATGCGAACACCCA 61.047 61.111 0.00 0.00 35.17 4.51
1898 1912 3.047280 TGCGATGCGAACACCCAC 61.047 61.111 0.00 0.00 0.00 4.61
1899 1913 3.047280 GCGATGCGAACACCCACA 61.047 61.111 0.00 0.00 0.00 4.17
1900 1914 2.860293 CGATGCGAACACCCACAC 59.140 61.111 0.00 0.00 0.00 3.82
1901 1915 1.958715 CGATGCGAACACCCACACA 60.959 57.895 0.00 0.00 0.00 3.72
1902 1916 1.502990 CGATGCGAACACCCACACAA 61.503 55.000 0.00 0.00 0.00 3.33
1903 1917 0.238289 GATGCGAACACCCACACAAG 59.762 55.000 0.00 0.00 0.00 3.16
1904 1918 1.172180 ATGCGAACACCCACACAAGG 61.172 55.000 0.00 0.00 0.00 3.61
1905 1919 1.822186 GCGAACACCCACACAAGGT 60.822 57.895 0.00 0.00 38.48 3.50
1906 1920 0.533308 GCGAACACCCACACAAGGTA 60.533 55.000 0.00 0.00 35.24 3.08
1907 1921 1.956297 CGAACACCCACACAAGGTAA 58.044 50.000 0.00 0.00 35.24 2.85
1908 1922 2.290464 CGAACACCCACACAAGGTAAA 58.710 47.619 0.00 0.00 35.24 2.01
1909 1923 2.683867 CGAACACCCACACAAGGTAAAA 59.316 45.455 0.00 0.00 35.24 1.52
1910 1924 3.487879 CGAACACCCACACAAGGTAAAAC 60.488 47.826 0.00 0.00 35.24 2.43
1911 1925 2.380941 ACACCCACACAAGGTAAAACC 58.619 47.619 0.00 0.00 38.99 3.27
1922 1936 2.567985 AGGTAAAACCACTCAACACCG 58.432 47.619 0.00 0.00 41.95 4.94
1926 1940 2.116827 AAACCACTCAACACCGACAA 57.883 45.000 0.00 0.00 0.00 3.18
1927 1941 1.663695 AACCACTCAACACCGACAAG 58.336 50.000 0.00 0.00 0.00 3.16
1928 1942 0.828022 ACCACTCAACACCGACAAGA 59.172 50.000 0.00 0.00 0.00 3.02
1930 1944 2.285083 CCACTCAACACCGACAAGAAA 58.715 47.619 0.00 0.00 0.00 2.52
1936 1950 2.457366 ACACCGACAAGAAAGCCTAG 57.543 50.000 0.00 0.00 0.00 3.02
1960 1974 6.374565 AGCTATTCTCTCACAAAATGATGC 57.625 37.500 0.00 0.00 36.48 3.91
1963 1977 7.031372 GCTATTCTCTCACAAAATGATGCAAA 58.969 34.615 0.00 0.00 36.48 3.68
1972 1986 5.984926 CACAAAATGATGCAAACTACCAACT 59.015 36.000 0.00 0.00 0.00 3.16
1978 1992 4.530553 TGATGCAAACTACCAACTCCTAGA 59.469 41.667 0.00 0.00 0.00 2.43
1981 1995 3.619242 GCAAACTACCAACTCCTAGACCC 60.619 52.174 0.00 0.00 0.00 4.46
1987 2001 0.249073 CAACTCCTAGACCCGCATCG 60.249 60.000 0.00 0.00 0.00 3.84
1993 2007 0.174845 CTAGACCCGCATCGTTCCAA 59.825 55.000 0.00 0.00 0.00 3.53
2019 2033 0.671781 AGCTCGTTGAGGATGTGCAC 60.672 55.000 10.75 10.75 36.47 4.57
2023 2037 1.001860 TCGTTGAGGATGTGCACATGA 59.998 47.619 35.92 21.34 36.57 3.07
2025 2039 2.159612 CGTTGAGGATGTGCACATGAAG 60.160 50.000 35.92 15.49 36.57 3.02
2036 2050 1.202110 GCACATGAAGCTCATCAACGG 60.202 52.381 0.00 0.00 34.28 4.44
2041 2055 2.688507 TGAAGCTCATCAACGGTCTTC 58.311 47.619 0.00 0.00 0.00 2.87
2043 2057 2.376808 AGCTCATCAACGGTCTTCTG 57.623 50.000 0.00 0.00 0.00 3.02
2046 2060 2.417379 GCTCATCAACGGTCTTCTGCTA 60.417 50.000 0.00 0.00 0.00 3.49
2047 2061 3.182967 CTCATCAACGGTCTTCTGCTAC 58.817 50.000 0.00 0.00 0.00 3.58
2054 2068 1.116308 GGTCTTCTGCTACTCCCTCC 58.884 60.000 0.00 0.00 0.00 4.30
2059 2073 0.970937 TCTGCTACTCCCTCCGGTTG 60.971 60.000 0.00 0.00 0.00 3.77
2067 2081 1.147376 CCCTCCGGTTGAACACACA 59.853 57.895 0.00 0.00 0.00 3.72
2071 2085 2.631428 CGGTTGAACACACAGGCG 59.369 61.111 0.00 0.00 0.00 5.52
2087 2101 0.603065 GGCGTTCCTTTGCTTCCATT 59.397 50.000 0.00 0.00 0.00 3.16
2089 2103 1.701704 CGTTCCTTTGCTTCCATTGC 58.298 50.000 0.00 0.00 0.00 3.56
2096 2110 0.537143 TTGCTTCCATTGCGACCAGT 60.537 50.000 0.00 0.00 0.00 4.00
2114 2128 0.572590 GTCGATCGCAATGACGAAGG 59.427 55.000 11.09 0.83 46.59 3.46
2135 2149 2.165437 GTGTCGAAGCCTCTCTTGATCT 59.835 50.000 0.00 0.00 34.56 2.75
2137 2151 4.017126 TGTCGAAGCCTCTCTTGATCTTA 58.983 43.478 0.00 0.00 34.56 2.10
2139 2153 3.381908 TCGAAGCCTCTCTTGATCTTACC 59.618 47.826 0.00 0.00 34.56 2.85
2141 2155 4.692228 GAAGCCTCTCTTGATCTTACCAG 58.308 47.826 0.00 0.00 34.56 4.00
2145 2159 4.836825 CCTCTCTTGATCTTACCAGCAAA 58.163 43.478 0.00 0.00 0.00 3.68
2146 2160 4.633565 CCTCTCTTGATCTTACCAGCAAAC 59.366 45.833 0.00 0.00 0.00 2.93
2152 2166 2.922740 TCTTACCAGCAAACGGTCTT 57.077 45.000 0.00 0.00 37.99 3.01
2154 2168 1.459592 CTTACCAGCAAACGGTCTTCG 59.540 52.381 0.00 0.00 45.88 3.79
2157 2171 0.600255 CCAGCAAACGGTCTTCGAGT 60.600 55.000 0.00 0.00 42.43 4.18
2158 2172 0.784778 CAGCAAACGGTCTTCGAGTC 59.215 55.000 0.00 0.00 42.43 3.36
2159 2173 0.674534 AGCAAACGGTCTTCGAGTCT 59.325 50.000 0.00 0.00 42.43 3.24
2161 2175 0.784778 CAAACGGTCTTCGAGTCTGC 59.215 55.000 0.00 0.00 42.43 4.26
2170 2184 2.031012 CGAGTCTGCAGCCACCAA 59.969 61.111 9.47 0.00 0.00 3.67
2173 2187 0.321919 GAGTCTGCAGCCACCAATCA 60.322 55.000 9.47 0.00 0.00 2.57
2175 2189 0.524862 GTCTGCAGCCACCAATCAAG 59.475 55.000 9.47 0.00 0.00 3.02
2179 2193 0.248289 GCAGCCACCAATCAAGCATT 59.752 50.000 0.00 0.00 0.00 3.56
2181 2195 1.822990 CAGCCACCAATCAAGCATTCT 59.177 47.619 0.00 0.00 0.00 2.40
2197 2211 4.347360 CATTCTATCATGCACCTGAGGA 57.653 45.455 4.99 0.00 0.00 3.71
2198 2212 3.827008 TTCTATCATGCACCTGAGGAC 57.173 47.619 4.99 0.00 0.00 3.85
2201 2215 1.283347 ATCATGCACCTGAGGACTGT 58.717 50.000 4.99 0.00 0.00 3.55
2203 2217 0.322648 CATGCACCTGAGGACTGTCA 59.677 55.000 4.99 0.00 0.00 3.58
2205 2219 1.059098 TGCACCTGAGGACTGTCAAT 58.941 50.000 4.99 0.00 0.00 2.57
2207 2221 2.840038 TGCACCTGAGGACTGTCAATAT 59.160 45.455 4.99 0.00 0.00 1.28
2208 2222 3.118629 TGCACCTGAGGACTGTCAATATC 60.119 47.826 4.99 2.79 0.00 1.63
2211 2225 3.708631 ACCTGAGGACTGTCAATATCCAG 59.291 47.826 4.99 6.72 34.73 3.86
2212 2226 3.963374 CCTGAGGACTGTCAATATCCAGA 59.037 47.826 10.38 0.00 34.73 3.86
2214 2228 5.071519 CCTGAGGACTGTCAATATCCAGATT 59.928 44.000 10.38 0.00 34.73 2.40
2215 2229 6.409005 CCTGAGGACTGTCAATATCCAGATTT 60.409 42.308 10.38 0.00 34.73 2.17
2221 2235 7.256332 GGACTGTCAATATCCAGATTTAGGCTA 60.256 40.741 10.38 0.00 32.35 3.93
2224 2238 8.206126 TGTCAATATCCAGATTTAGGCTATGA 57.794 34.615 0.00 0.00 0.00 2.15
2226 2240 9.507329 GTCAATATCCAGATTTAGGCTATGAAA 57.493 33.333 0.00 0.00 0.00 2.69
2244 2258 0.963962 AAGCATTTGTGCCAGACCTG 59.036 50.000 0.00 0.00 34.90 4.00
2245 2259 0.111061 AGCATTTGTGCCAGACCTGA 59.889 50.000 0.00 0.00 34.90 3.86
2247 2261 0.518636 CATTTGTGCCAGACCTGACG 59.481 55.000 0.00 0.00 0.00 4.35
2248 2262 0.396435 ATTTGTGCCAGACCTGACGA 59.604 50.000 0.00 0.00 0.00 4.20
2254 2268 0.390860 GCCAGACCTGACGAGCATAT 59.609 55.000 0.00 0.00 0.00 1.78
2260 2274 1.269102 ACCTGACGAGCATATACGCAC 60.269 52.381 0.00 0.00 0.00 5.34
2263 2277 1.673920 TGACGAGCATATACGCACTGA 59.326 47.619 0.00 0.00 0.00 3.41
2266 2280 1.448308 CGAGCATATACGCACTGAACG 59.552 52.381 0.00 0.00 0.00 3.95
2275 2289 1.868997 GCACTGAACGTGGATGTGG 59.131 57.895 11.34 0.00 43.97 4.17
2287 2301 2.981859 GGATGTGGTCCACGTTATCT 57.018 50.000 17.97 0.00 46.96 1.98
2293 2307 1.829222 TGGTCCACGTTATCTTCCTCC 59.171 52.381 0.00 0.00 0.00 4.30
2296 2310 2.758979 GTCCACGTTATCTTCCTCCTGA 59.241 50.000 0.00 0.00 0.00 3.86
2311 2325 3.190118 CCTCCTGAAGACAAATGAAGCAC 59.810 47.826 0.00 0.00 0.00 4.40
2313 2327 2.095567 CCTGAAGACAAATGAAGCACGG 60.096 50.000 0.00 0.00 0.00 4.94
2344 2358 2.092914 GTCCTGTAAACCATGCCTAGCT 60.093 50.000 0.00 0.00 0.00 3.32
2345 2359 2.576191 TCCTGTAAACCATGCCTAGCTT 59.424 45.455 0.00 0.00 0.00 3.74
2353 2367 1.506493 CATGCCTAGCTTGACGATCC 58.494 55.000 0.00 0.00 36.06 3.36
2356 2370 0.102481 GCCTAGCTTGACGATCCGAA 59.898 55.000 0.00 0.00 0.00 4.30
2371 2385 1.065709 TCCGAAGTCCAAACCCTATGC 60.066 52.381 0.00 0.00 0.00 3.14
2373 2387 2.169769 CCGAAGTCCAAACCCTATGCTA 59.830 50.000 0.00 0.00 0.00 3.49
2379 2393 1.014352 CAAACCCTATGCTACACCGC 58.986 55.000 0.00 0.00 0.00 5.68
2380 2394 0.616371 AAACCCTATGCTACACCGCA 59.384 50.000 0.00 0.00 45.10 5.69
2410 2424 3.380004 TGTGTAACTTGCACTTCAAAGGG 59.620 43.478 10.83 0.00 38.04 3.95
2413 2427 0.106015 ACTTGCACTTCAAAGGGGCT 60.106 50.000 9.19 0.00 33.65 5.19
2414 2428 0.316204 CTTGCACTTCAAAGGGGCTG 59.684 55.000 9.19 0.00 33.65 4.85
2425 2439 1.560866 AAGGGGCTGAGCTCTTCCAG 61.561 60.000 16.19 5.48 0.00 3.86
2452 2466 3.443588 GCAAACGGCACCCTTTCT 58.556 55.556 0.00 0.00 43.97 2.52
2455 2469 1.544246 GCAAACGGCACCCTTTCTAAT 59.456 47.619 0.00 0.00 43.97 1.73
2458 2472 1.286248 ACGGCACCCTTTCTAATCCT 58.714 50.000 0.00 0.00 0.00 3.24
2464 2478 4.079253 GCACCCTTTCTAATCCTTGACAA 58.921 43.478 0.00 0.00 0.00 3.18
2467 2481 5.770162 CACCCTTTCTAATCCTTGACAAAGT 59.230 40.000 0.00 0.00 0.00 2.66
2470 2484 6.150140 CCCTTTCTAATCCTTGACAAAGTCTG 59.850 42.308 0.00 0.00 33.15 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.170584 GTCTTTACTAAAGCATTTTTGTCAGTC 57.829 33.333 3.91 0.00 40.09 3.51
1 2 7.855904 CGTCTTTACTAAAGCATTTTTGTCAGT 59.144 33.333 3.91 0.00 40.09 3.41
2 3 7.149128 GCGTCTTTACTAAAGCATTTTTGTCAG 60.149 37.037 3.91 0.00 40.09 3.51
3 4 6.635239 GCGTCTTTACTAAAGCATTTTTGTCA 59.365 34.615 3.91 0.00 40.09 3.58
4 5 6.635239 TGCGTCTTTACTAAAGCATTTTTGTC 59.365 34.615 3.91 0.00 40.09 3.18
5 6 6.500041 TGCGTCTTTACTAAAGCATTTTTGT 58.500 32.000 3.91 0.00 40.09 2.83
6 7 6.855914 TCTGCGTCTTTACTAAAGCATTTTTG 59.144 34.615 3.91 0.00 40.09 2.44
7 8 6.966021 TCTGCGTCTTTACTAAAGCATTTTT 58.034 32.000 3.91 0.00 40.09 1.94
8 9 6.554334 TCTGCGTCTTTACTAAAGCATTTT 57.446 33.333 3.91 0.00 40.09 1.82
9 10 6.348540 CCTTCTGCGTCTTTACTAAAGCATTT 60.349 38.462 3.91 0.00 43.42 2.32
10 11 5.122396 CCTTCTGCGTCTTTACTAAAGCATT 59.878 40.000 3.91 0.00 38.39 3.56
11 12 4.631813 CCTTCTGCGTCTTTACTAAAGCAT 59.368 41.667 3.91 0.00 38.39 3.79
12 13 3.994392 CCTTCTGCGTCTTTACTAAAGCA 59.006 43.478 3.91 0.00 38.39 3.91
13 14 4.243270 TCCTTCTGCGTCTTTACTAAAGC 58.757 43.478 3.91 0.00 38.39 3.51
14 15 4.865365 CCTCCTTCTGCGTCTTTACTAAAG 59.135 45.833 2.49 2.49 39.88 1.85
15 16 4.322499 CCCTCCTTCTGCGTCTTTACTAAA 60.322 45.833 0.00 0.00 0.00 1.85
16 17 3.194968 CCCTCCTTCTGCGTCTTTACTAA 59.805 47.826 0.00 0.00 0.00 2.24
17 18 2.758979 CCCTCCTTCTGCGTCTTTACTA 59.241 50.000 0.00 0.00 0.00 1.82
18 19 1.550976 CCCTCCTTCTGCGTCTTTACT 59.449 52.381 0.00 0.00 0.00 2.24
19 20 2.007547 GCCCTCCTTCTGCGTCTTTAC 61.008 57.143 0.00 0.00 0.00 2.01
20 21 0.249398 GCCCTCCTTCTGCGTCTTTA 59.751 55.000 0.00 0.00 0.00 1.85
21 22 1.003233 GCCCTCCTTCTGCGTCTTT 60.003 57.895 0.00 0.00 0.00 2.52
22 23 2.665603 GCCCTCCTTCTGCGTCTT 59.334 61.111 0.00 0.00 0.00 3.01
23 24 3.764466 CGCCCTCCTTCTGCGTCT 61.764 66.667 0.00 0.00 43.12 4.18
27 28 0.678048 AACAATCGCCCTCCTTCTGC 60.678 55.000 0.00 0.00 0.00 4.26
28 29 1.826385 AAACAATCGCCCTCCTTCTG 58.174 50.000 0.00 0.00 0.00 3.02
29 30 2.162681 CAAAACAATCGCCCTCCTTCT 58.837 47.619 0.00 0.00 0.00 2.85
30 31 1.202348 CCAAAACAATCGCCCTCCTTC 59.798 52.381 0.00 0.00 0.00 3.46
31 32 1.256812 CCAAAACAATCGCCCTCCTT 58.743 50.000 0.00 0.00 0.00 3.36
32 33 0.112412 ACCAAAACAATCGCCCTCCT 59.888 50.000 0.00 0.00 0.00 3.69
33 34 0.243636 CACCAAAACAATCGCCCTCC 59.756 55.000 0.00 0.00 0.00 4.30
34 35 0.243636 CCACCAAAACAATCGCCCTC 59.756 55.000 0.00 0.00 0.00 4.30
35 36 0.178975 TCCACCAAAACAATCGCCCT 60.179 50.000 0.00 0.00 0.00 5.19
36 37 0.894835 ATCCACCAAAACAATCGCCC 59.105 50.000 0.00 0.00 0.00 6.13
37 38 2.736192 CAAATCCACCAAAACAATCGCC 59.264 45.455 0.00 0.00 0.00 5.54
38 39 3.648009 TCAAATCCACCAAAACAATCGC 58.352 40.909 0.00 0.00 0.00 4.58
39 40 5.468592 TGATCAAATCCACCAAAACAATCG 58.531 37.500 0.00 0.00 0.00 3.34
40 41 7.910441 ATTGATCAAATCCACCAAAACAATC 57.090 32.000 13.09 0.00 0.00 2.67
41 42 8.694581 AAATTGATCAAATCCACCAAAACAAT 57.305 26.923 13.09 0.00 0.00 2.71
42 43 8.517062 AAAATTGATCAAATCCACCAAAACAA 57.483 26.923 13.09 0.00 0.00 2.83
43 44 8.517062 AAAAATTGATCAAATCCACCAAAACA 57.483 26.923 13.09 0.00 0.00 2.83
63 64 9.816354 CCGGACCTTCATAAATTTCATAAAAAT 57.184 29.630 0.00 0.00 0.00 1.82
64 65 8.808092 ACCGGACCTTCATAAATTTCATAAAAA 58.192 29.630 9.46 0.00 0.00 1.94
65 66 8.356000 ACCGGACCTTCATAAATTTCATAAAA 57.644 30.769 9.46 0.00 0.00 1.52
66 67 7.948034 ACCGGACCTTCATAAATTTCATAAA 57.052 32.000 9.46 0.00 0.00 1.40
67 68 7.948034 AACCGGACCTTCATAAATTTCATAA 57.052 32.000 9.46 0.00 0.00 1.90
68 69 7.394923 ACAAACCGGACCTTCATAAATTTCATA 59.605 33.333 9.46 0.00 0.00 2.15
69 70 6.210584 ACAAACCGGACCTTCATAAATTTCAT 59.789 34.615 9.46 0.00 0.00 2.57
70 71 5.536916 ACAAACCGGACCTTCATAAATTTCA 59.463 36.000 9.46 0.00 0.00 2.69
71 72 6.020971 ACAAACCGGACCTTCATAAATTTC 57.979 37.500 9.46 0.00 0.00 2.17
72 73 5.335348 CGACAAACCGGACCTTCATAAATTT 60.335 40.000 9.46 0.00 0.00 1.82
73 74 4.155280 CGACAAACCGGACCTTCATAAATT 59.845 41.667 9.46 0.00 0.00 1.82
74 75 3.687698 CGACAAACCGGACCTTCATAAAT 59.312 43.478 9.46 0.00 0.00 1.40
75 76 3.068560 CGACAAACCGGACCTTCATAAA 58.931 45.455 9.46 0.00 0.00 1.40
76 77 2.690786 CGACAAACCGGACCTTCATAA 58.309 47.619 9.46 0.00 0.00 1.90
77 78 2.373540 CGACAAACCGGACCTTCATA 57.626 50.000 9.46 0.00 0.00 2.15
78 79 3.226884 CGACAAACCGGACCTTCAT 57.773 52.632 9.46 0.00 0.00 2.57
79 80 4.762825 CGACAAACCGGACCTTCA 57.237 55.556 9.46 0.00 0.00 3.02
87 88 1.277440 CGTTGAACCCGACAAACCG 59.723 57.895 0.00 0.00 0.00 4.44
88 89 0.028374 CACGTTGAACCCGACAAACC 59.972 55.000 0.00 0.00 0.00 3.27
89 90 1.008329 TCACGTTGAACCCGACAAAC 58.992 50.000 0.00 0.00 0.00 2.93
90 91 1.008329 GTCACGTTGAACCCGACAAA 58.992 50.000 6.84 0.00 0.00 2.83
91 92 0.108281 TGTCACGTTGAACCCGACAA 60.108 50.000 10.84 0.00 33.86 3.18
92 93 0.528901 CTGTCACGTTGAACCCGACA 60.529 55.000 12.20 12.20 35.44 4.35
93 94 0.249155 TCTGTCACGTTGAACCCGAC 60.249 55.000 5.17 5.17 0.00 4.79
94 95 0.249155 GTCTGTCACGTTGAACCCGA 60.249 55.000 0.00 0.00 0.00 5.14
95 96 1.545614 CGTCTGTCACGTTGAACCCG 61.546 60.000 0.00 0.00 44.07 5.28
96 97 2.222592 CGTCTGTCACGTTGAACCC 58.777 57.895 0.00 0.00 44.07 4.11
105 106 2.502080 CTCGGACGCGTCTGTCAC 60.502 66.667 38.80 22.14 40.72 3.67
106 107 4.400109 GCTCGGACGCGTCTGTCA 62.400 66.667 38.80 24.63 40.72 3.58
122 123 1.789078 TATAGAAGGTCCGGACGCGC 61.789 60.000 27.68 18.17 0.00 6.86
123 124 0.879765 ATATAGAAGGTCCGGACGCG 59.120 55.000 27.68 3.53 0.00 6.01
124 125 1.201880 GGATATAGAAGGTCCGGACGC 59.798 57.143 27.68 19.96 0.00 5.19
130 131 3.764434 TCTGATGCGGATATAGAAGGTCC 59.236 47.826 0.00 0.00 0.00 4.46
131 132 5.105554 ACATCTGATGCGGATATAGAAGGTC 60.106 44.000 17.24 0.00 0.00 3.85
132 133 4.774726 ACATCTGATGCGGATATAGAAGGT 59.225 41.667 17.24 6.52 0.00 3.50
133 134 5.336150 ACATCTGATGCGGATATAGAAGG 57.664 43.478 17.24 6.03 0.00 3.46
134 135 6.475076 GCTTACATCTGATGCGGATATAGAAG 59.525 42.308 17.24 6.05 0.00 2.85
135 136 6.153510 AGCTTACATCTGATGCGGATATAGAA 59.846 38.462 17.24 0.00 0.00 2.10
136 137 5.654209 AGCTTACATCTGATGCGGATATAGA 59.346 40.000 17.24 5.95 0.00 1.98
137 138 5.747675 CAGCTTACATCTGATGCGGATATAG 59.252 44.000 17.24 5.89 33.54 1.31
138 139 5.418840 TCAGCTTACATCTGATGCGGATATA 59.581 40.000 17.24 0.00 35.81 0.86
139 140 4.221482 TCAGCTTACATCTGATGCGGATAT 59.779 41.667 17.24 0.00 35.81 1.63
140 141 3.573967 TCAGCTTACATCTGATGCGGATA 59.426 43.478 17.24 0.00 35.81 2.59
141 142 2.366590 TCAGCTTACATCTGATGCGGAT 59.633 45.455 17.24 4.09 35.81 4.18
142 143 1.756538 TCAGCTTACATCTGATGCGGA 59.243 47.619 17.24 6.96 35.81 5.54
143 144 2.229675 TCAGCTTACATCTGATGCGG 57.770 50.000 17.24 8.75 35.81 5.69
144 145 7.767745 ATATATTCAGCTTACATCTGATGCG 57.232 36.000 17.24 7.55 39.96 4.73
153 154 9.645059 GCACTCTTCATATATATTCAGCTTACA 57.355 33.333 0.00 0.00 0.00 2.41
154 155 9.092876 GGCACTCTTCATATATATTCAGCTTAC 57.907 37.037 0.00 0.00 0.00 2.34
155 156 7.976175 CGGCACTCTTCATATATATTCAGCTTA 59.024 37.037 0.00 0.00 0.00 3.09
156 157 6.815641 CGGCACTCTTCATATATATTCAGCTT 59.184 38.462 0.00 0.00 0.00 3.74
157 158 6.336566 CGGCACTCTTCATATATATTCAGCT 58.663 40.000 0.00 0.00 0.00 4.24
158 159 5.521735 CCGGCACTCTTCATATATATTCAGC 59.478 44.000 0.00 0.00 0.00 4.26
159 160 6.634805 ACCGGCACTCTTCATATATATTCAG 58.365 40.000 0.00 0.00 0.00 3.02
160 161 6.605471 ACCGGCACTCTTCATATATATTCA 57.395 37.500 0.00 0.00 0.00 2.57
161 162 8.997621 TTAACCGGCACTCTTCATATATATTC 57.002 34.615 0.00 0.00 0.00 1.75
162 163 7.549488 GCTTAACCGGCACTCTTCATATATATT 59.451 37.037 0.00 0.00 0.00 1.28
163 164 7.042335 GCTTAACCGGCACTCTTCATATATAT 58.958 38.462 0.00 0.00 0.00 0.86
164 165 6.395629 GCTTAACCGGCACTCTTCATATATA 58.604 40.000 0.00 0.00 0.00 0.86
165 166 5.238583 GCTTAACCGGCACTCTTCATATAT 58.761 41.667 0.00 0.00 0.00 0.86
166 167 4.502604 GGCTTAACCGGCACTCTTCATATA 60.503 45.833 0.00 0.00 0.00 0.86
167 168 3.467803 GCTTAACCGGCACTCTTCATAT 58.532 45.455 0.00 0.00 0.00 1.78
168 169 2.419574 GGCTTAACCGGCACTCTTCATA 60.420 50.000 0.00 0.00 0.00 2.15
169 170 1.679032 GGCTTAACCGGCACTCTTCAT 60.679 52.381 0.00 0.00 0.00 2.57
170 171 0.321298 GGCTTAACCGGCACTCTTCA 60.321 55.000 0.00 0.00 0.00 3.02
171 172 2.467962 GGCTTAACCGGCACTCTTC 58.532 57.895 0.00 0.00 0.00 2.87
172 173 4.716003 GGCTTAACCGGCACTCTT 57.284 55.556 0.00 0.00 0.00 2.85
181 182 2.862536 GTCTTATTCGTCCGGCTTAACC 59.137 50.000 0.00 0.00 0.00 2.85
182 183 2.862536 GGTCTTATTCGTCCGGCTTAAC 59.137 50.000 0.00 0.00 0.00 2.01
183 184 2.480073 CGGTCTTATTCGTCCGGCTTAA 60.480 50.000 0.00 0.00 39.41 1.85
184 185 1.066002 CGGTCTTATTCGTCCGGCTTA 59.934 52.381 0.00 0.00 39.41 3.09
185 186 0.179119 CGGTCTTATTCGTCCGGCTT 60.179 55.000 0.00 0.00 39.41 4.35
186 187 1.436336 CGGTCTTATTCGTCCGGCT 59.564 57.895 0.00 0.00 39.41 5.52
187 188 4.008035 CGGTCTTATTCGTCCGGC 57.992 61.111 0.00 0.00 39.41 6.13
189 190 1.657094 CAAACCGGTCTTATTCGTCCG 59.343 52.381 8.04 0.00 42.22 4.79
190 191 2.963432 TCAAACCGGTCTTATTCGTCC 58.037 47.619 8.04 0.00 0.00 4.79
191 192 4.240096 TCTTCAAACCGGTCTTATTCGTC 58.760 43.478 8.04 0.00 0.00 4.20
192 193 4.243270 CTCTTCAAACCGGTCTTATTCGT 58.757 43.478 8.04 0.00 0.00 3.85
193 194 3.617263 CCTCTTCAAACCGGTCTTATTCG 59.383 47.826 8.04 0.00 0.00 3.34
194 195 3.374367 GCCTCTTCAAACCGGTCTTATTC 59.626 47.826 8.04 0.00 0.00 1.75
195 196 3.344515 GCCTCTTCAAACCGGTCTTATT 58.655 45.455 8.04 0.00 0.00 1.40
196 197 2.355818 GGCCTCTTCAAACCGGTCTTAT 60.356 50.000 8.04 0.00 0.00 1.73
197 198 1.002773 GGCCTCTTCAAACCGGTCTTA 59.997 52.381 8.04 0.00 0.00 2.10
198 199 0.250770 GGCCTCTTCAAACCGGTCTT 60.251 55.000 8.04 1.26 0.00 3.01
199 200 1.375326 GGCCTCTTCAAACCGGTCT 59.625 57.895 8.04 0.00 0.00 3.85
200 201 2.033194 CGGCCTCTTCAAACCGGTC 61.033 63.158 8.04 0.00 41.95 4.79
201 202 2.032071 CGGCCTCTTCAAACCGGT 59.968 61.111 0.00 0.00 41.95 5.28
203 204 2.515996 TAGCCGGCCTCTTCAAACCG 62.516 60.000 26.15 0.00 45.21 4.44
204 205 0.744771 CTAGCCGGCCTCTTCAAACC 60.745 60.000 26.15 0.00 0.00 3.27
205 206 0.249398 TCTAGCCGGCCTCTTCAAAC 59.751 55.000 26.15 0.00 0.00 2.93
206 207 1.139058 GATCTAGCCGGCCTCTTCAAA 59.861 52.381 26.15 0.00 0.00 2.69
207 208 0.753262 GATCTAGCCGGCCTCTTCAA 59.247 55.000 26.15 1.78 0.00 2.69
208 209 1.456196 CGATCTAGCCGGCCTCTTCA 61.456 60.000 26.15 0.97 0.00 3.02
209 210 1.287503 CGATCTAGCCGGCCTCTTC 59.712 63.158 26.15 14.70 0.00 2.87
210 211 2.862223 GCGATCTAGCCGGCCTCTT 61.862 63.158 26.15 7.06 0.00 2.85
211 212 3.299190 GCGATCTAGCCGGCCTCT 61.299 66.667 26.15 7.52 0.00 3.69
212 213 4.708968 CGCGATCTAGCCGGCCTC 62.709 72.222 26.15 14.14 0.00 4.70
214 215 3.575351 AATCGCGATCTAGCCGGCC 62.575 63.158 26.15 6.12 0.00 6.13
215 216 1.222115 AAAATCGCGATCTAGCCGGC 61.222 55.000 23.92 21.89 0.00 6.13
216 217 2.060326 TAAAATCGCGATCTAGCCGG 57.940 50.000 23.92 0.00 0.00 6.13
217 218 3.059570 GTCATAAAATCGCGATCTAGCCG 59.940 47.826 23.92 9.83 0.00 5.52
218 219 3.368236 GGTCATAAAATCGCGATCTAGCC 59.632 47.826 23.92 13.96 0.00 3.93
219 220 3.059570 CGGTCATAAAATCGCGATCTAGC 59.940 47.826 23.92 12.17 0.00 3.42
220 221 3.608506 CCGGTCATAAAATCGCGATCTAG 59.391 47.826 23.92 10.96 0.00 2.43
221 222 3.005050 ACCGGTCATAAAATCGCGATCTA 59.995 43.478 23.92 16.82 0.00 1.98
222 223 2.223971 ACCGGTCATAAAATCGCGATCT 60.224 45.455 23.92 15.10 0.00 2.75
223 224 2.132762 ACCGGTCATAAAATCGCGATC 58.867 47.619 23.92 7.65 0.00 3.69
224 225 2.132762 GACCGGTCATAAAATCGCGAT 58.867 47.619 29.75 17.62 0.00 4.58
225 226 1.135053 TGACCGGTCATAAAATCGCGA 60.135 47.619 33.23 13.09 34.14 5.87
226 227 1.005347 GTGACCGGTCATAAAATCGCG 60.005 52.381 38.11 0.00 42.18 5.87
227 228 2.030457 CAGTGACCGGTCATAAAATCGC 59.970 50.000 38.11 22.80 42.18 4.58
228 229 3.306166 GTCAGTGACCGGTCATAAAATCG 59.694 47.826 38.11 20.73 42.18 3.34
229 230 4.250464 TGTCAGTGACCGGTCATAAAATC 58.750 43.478 38.11 24.23 42.18 2.17
230 231 4.253685 CTGTCAGTGACCGGTCATAAAAT 58.746 43.478 38.11 19.61 42.18 1.82
231 232 3.556213 CCTGTCAGTGACCGGTCATAAAA 60.556 47.826 38.11 21.54 42.18 1.52
232 233 2.028476 CCTGTCAGTGACCGGTCATAAA 60.028 50.000 38.11 23.27 42.18 1.40
233 234 1.548719 CCTGTCAGTGACCGGTCATAA 59.451 52.381 38.11 23.61 42.18 1.90
234 235 1.182667 CCTGTCAGTGACCGGTCATA 58.817 55.000 38.11 23.99 42.18 2.15
235 236 1.975327 CCTGTCAGTGACCGGTCAT 59.025 57.895 38.11 23.97 42.18 3.06
236 237 2.867855 GCCTGTCAGTGACCGGTCA 61.868 63.158 33.23 33.23 38.81 4.02
237 238 1.248785 TAGCCTGTCAGTGACCGGTC 61.249 60.000 28.12 28.17 38.81 4.79
238 239 0.614979 ATAGCCTGTCAGTGACCGGT 60.615 55.000 28.12 21.13 38.81 5.28
239 240 0.103208 GATAGCCTGTCAGTGACCGG 59.897 60.000 25.02 25.02 39.42 5.28
240 241 0.103208 GGATAGCCTGTCAGTGACCG 59.897 60.000 20.43 13.98 0.00 4.79
241 242 1.134670 GTGGATAGCCTGTCAGTGACC 60.135 57.143 20.43 5.39 34.31 4.02
242 243 1.134670 GGTGGATAGCCTGTCAGTGAC 60.135 57.143 16.68 16.68 34.31 3.67
243 244 1.195115 GGTGGATAGCCTGTCAGTGA 58.805 55.000 0.00 0.00 34.31 3.41
244 245 0.179000 GGGTGGATAGCCTGTCAGTG 59.821 60.000 0.00 0.00 41.33 3.66
245 246 1.330655 CGGGTGGATAGCCTGTCAGT 61.331 60.000 0.00 0.00 42.39 3.41
246 247 1.443407 CGGGTGGATAGCCTGTCAG 59.557 63.158 0.00 0.00 42.39 3.51
247 248 2.063979 CCGGGTGGATAGCCTGTCA 61.064 63.158 0.00 0.00 42.39 3.58
248 249 1.760875 TCCGGGTGGATAGCCTGTC 60.761 63.158 0.00 0.00 42.39 3.51
249 250 2.366973 TCCGGGTGGATAGCCTGT 59.633 61.111 0.00 0.00 42.39 4.00
257 258 1.477700 CACTTTATACGTCCGGGTGGA 59.522 52.381 0.00 0.00 43.88 4.02
258 259 1.930567 CACTTTATACGTCCGGGTGG 58.069 55.000 0.00 0.00 0.00 4.61
259 260 1.283736 GCACTTTATACGTCCGGGTG 58.716 55.000 0.00 0.00 0.00 4.61
260 261 0.896923 TGCACTTTATACGTCCGGGT 59.103 50.000 0.00 0.00 0.00 5.28
261 262 1.864711 CATGCACTTTATACGTCCGGG 59.135 52.381 0.00 0.00 0.00 5.73
262 263 2.794910 CTCATGCACTTTATACGTCCGG 59.205 50.000 0.00 0.00 0.00 5.14
263 264 2.794910 CCTCATGCACTTTATACGTCCG 59.205 50.000 0.00 0.00 0.00 4.79
264 265 4.051922 CTCCTCATGCACTTTATACGTCC 58.948 47.826 0.00 0.00 0.00 4.79
265 266 3.491267 GCTCCTCATGCACTTTATACGTC 59.509 47.826 0.00 0.00 0.00 4.34
266 267 3.458189 GCTCCTCATGCACTTTATACGT 58.542 45.455 0.00 0.00 0.00 3.57
267 268 2.802816 GGCTCCTCATGCACTTTATACG 59.197 50.000 0.00 0.00 0.00 3.06
268 269 3.142174 GGGCTCCTCATGCACTTTATAC 58.858 50.000 0.00 0.00 0.00 1.47
269 270 2.777114 TGGGCTCCTCATGCACTTTATA 59.223 45.455 0.00 0.00 34.45 0.98
270 271 1.565759 TGGGCTCCTCATGCACTTTAT 59.434 47.619 0.00 0.00 34.45 1.40
271 272 0.991146 TGGGCTCCTCATGCACTTTA 59.009 50.000 0.00 0.00 34.45 1.85
272 273 0.112995 TTGGGCTCCTCATGCACTTT 59.887 50.000 0.00 0.00 34.45 2.66
273 274 0.610232 GTTGGGCTCCTCATGCACTT 60.610 55.000 0.00 0.00 34.45 3.16
274 275 1.001641 GTTGGGCTCCTCATGCACT 60.002 57.895 0.00 0.00 34.45 4.40
275 276 0.610232 AAGTTGGGCTCCTCATGCAC 60.610 55.000 0.00 0.00 0.00 4.57
276 277 0.609957 CAAGTTGGGCTCCTCATGCA 60.610 55.000 0.00 0.00 0.00 3.96
277 278 0.322816 TCAAGTTGGGCTCCTCATGC 60.323 55.000 2.34 0.00 0.00 4.06
278 279 2.205022 TTCAAGTTGGGCTCCTCATG 57.795 50.000 2.34 0.00 0.00 3.07
279 280 2.978156 TTTCAAGTTGGGCTCCTCAT 57.022 45.000 2.34 0.00 0.00 2.90
280 281 2.517959 CATTTCAAGTTGGGCTCCTCA 58.482 47.619 2.34 0.00 0.00 3.86
281 282 1.203287 GCATTTCAAGTTGGGCTCCTC 59.797 52.381 2.34 0.00 0.00 3.71
305 306 4.792189 CCGAGACACGAGTAACTTATGTTC 59.208 45.833 0.00 0.00 45.77 3.18
314 315 2.095768 CGTAAACCCGAGACACGAGTAA 60.096 50.000 0.00 0.00 45.77 2.24
326 327 0.513820 AATGTTGCGTCGTAAACCCG 59.486 50.000 0.00 0.00 0.00 5.28
384 385 1.071605 GACAGCAGCTGGACTAAACG 58.928 55.000 26.38 0.00 35.51 3.60
409 410 2.286872 GGCTGAAGATGTGGTCAGATG 58.713 52.381 4.89 0.00 43.32 2.90
448 449 1.374125 TGCGTTGAGATGTCCGTGG 60.374 57.895 0.00 0.00 0.00 4.94
450 451 1.733041 CGTGCGTTGAGATGTCCGT 60.733 57.895 0.00 0.00 0.00 4.69
451 452 3.071459 GCGTGCGTTGAGATGTCCG 62.071 63.158 0.00 0.00 0.00 4.79
452 453 2.778679 GCGTGCGTTGAGATGTCC 59.221 61.111 0.00 0.00 0.00 4.02
453 454 2.391821 CGCGTGCGTTGAGATGTC 59.608 61.111 6.00 0.00 34.35 3.06
454 455 3.777925 GCGCGTGCGTTGAGATGT 61.778 61.111 16.27 0.00 42.09 3.06
491 492 1.871080 CGGTGGAGTGGAATATGAGC 58.129 55.000 0.00 0.00 0.00 4.26
495 496 2.289694 GCTATGCGGTGGAGTGGAATAT 60.290 50.000 0.00 0.00 0.00 1.28
496 497 1.070134 GCTATGCGGTGGAGTGGAATA 59.930 52.381 0.00 0.00 0.00 1.75
497 498 0.179045 GCTATGCGGTGGAGTGGAAT 60.179 55.000 0.00 0.00 0.00 3.01
498 499 1.220749 GCTATGCGGTGGAGTGGAA 59.779 57.895 0.00 0.00 0.00 3.53
499 500 2.900273 GCTATGCGGTGGAGTGGA 59.100 61.111 0.00 0.00 0.00 4.02
513 514 1.053424 ACTGGTTTCCTTGGACGCTA 58.947 50.000 0.00 0.00 0.00 4.26
689 690 3.947196 TGCTTAACTAATGCATGGTGGAG 59.053 43.478 0.00 5.90 0.00 3.86
736 737 1.971167 GTGTGGCGGCAGATTTGGA 60.971 57.895 13.91 0.00 0.00 3.53
930 934 4.103357 CACTTGTATACGCTAACTTCGCT 58.897 43.478 0.00 0.00 0.00 4.93
972 976 2.230660 GCTCTAGCTTCCCTCTCTCTC 58.769 57.143 0.00 0.00 38.21 3.20
1176 1186 4.489771 CCCCTGGTAAGCTGCGGG 62.490 72.222 0.00 1.48 34.62 6.13
1256 1269 1.672356 GATTGTGACACTGCCGGCT 60.672 57.895 29.70 6.86 0.00 5.52
1365 1378 0.322816 TGCTGCCCTTGATGAAGTCC 60.323 55.000 0.00 0.00 0.00 3.85
1811 1825 3.492011 GCCTTTGTCGTACTCTCGAAAAA 59.508 43.478 4.75 4.75 42.32 1.94
1812 1826 3.054878 GCCTTTGTCGTACTCTCGAAAA 58.945 45.455 0.00 0.00 41.47 2.29
1813 1827 2.669364 GCCTTTGTCGTACTCTCGAAA 58.331 47.619 0.00 0.00 41.47 3.46
1814 1828 1.400629 CGCCTTTGTCGTACTCTCGAA 60.401 52.381 0.00 0.00 41.47 3.71
1815 1829 0.167470 CGCCTTTGTCGTACTCTCGA 59.833 55.000 0.00 0.00 37.51 4.04
1816 1830 0.109873 ACGCCTTTGTCGTACTCTCG 60.110 55.000 0.00 0.00 38.52 4.04
1817 1831 2.907910 TACGCCTTTGTCGTACTCTC 57.092 50.000 0.00 0.00 40.89 3.20
1818 1832 2.751259 TGATACGCCTTTGTCGTACTCT 59.249 45.455 0.00 0.00 43.88 3.24
1819 1833 3.141002 TGATACGCCTTTGTCGTACTC 57.859 47.619 0.00 0.00 43.88 2.59
1820 1834 3.795623 ATGATACGCCTTTGTCGTACT 57.204 42.857 0.00 0.00 43.88 2.73
1821 1835 6.520792 AAATATGATACGCCTTTGTCGTAC 57.479 37.500 0.00 0.00 43.88 3.67
1822 1836 7.542534 AAAAATATGATACGCCTTTGTCGTA 57.457 32.000 0.00 0.00 44.94 3.43
1823 1837 6.431198 AAAAATATGATACGCCTTTGTCGT 57.569 33.333 0.00 0.00 43.20 4.34
1824 1838 9.741168 CTATAAAAATATGATACGCCTTTGTCG 57.259 33.333 0.00 0.00 0.00 4.35
1849 1863 9.262358 GTTCTTGTACATAACTTTCTGACTTCT 57.738 33.333 12.18 0.00 0.00 2.85
1850 1864 9.262358 AGTTCTTGTACATAACTTTCTGACTTC 57.738 33.333 15.03 0.00 29.25 3.01
1851 1865 9.614792 AAGTTCTTGTACATAACTTTCTGACTT 57.385 29.630 22.05 8.92 39.74 3.01
1852 1866 9.046296 CAAGTTCTTGTACATAACTTTCTGACT 57.954 33.333 23.89 8.23 40.52 3.41
1853 1867 7.798982 GCAAGTTCTTGTACATAACTTTCTGAC 59.201 37.037 23.89 13.32 40.52 3.51
1854 1868 7.307160 CGCAAGTTCTTGTACATAACTTTCTGA 60.307 37.037 23.89 0.00 40.52 3.27
1855 1869 6.792250 CGCAAGTTCTTGTACATAACTTTCTG 59.208 38.462 23.89 18.12 40.52 3.02
1856 1870 6.888430 CGCAAGTTCTTGTACATAACTTTCT 58.112 36.000 23.89 9.78 40.52 2.52
1876 1890 3.341835 TGTTCGCATCGCACGCAA 61.342 55.556 0.00 0.00 0.00 4.85
1877 1891 4.070818 GTGTTCGCATCGCACGCA 62.071 61.111 0.00 0.00 34.17 5.24
1878 1892 4.794241 GGTGTTCGCATCGCACGC 62.794 66.667 0.00 0.00 33.36 5.34
1879 1893 4.147322 GGGTGTTCGCATCGCACG 62.147 66.667 0.00 0.00 34.25 5.34
1880 1894 3.047280 TGGGTGTTCGCATCGCAC 61.047 61.111 0.00 0.00 0.00 5.34
1881 1895 3.047280 GTGGGTGTTCGCATCGCA 61.047 61.111 0.00 0.00 38.69 5.10
1882 1896 3.047280 TGTGGGTGTTCGCATCGC 61.047 61.111 0.00 0.00 38.69 4.58
1883 1897 1.502990 TTGTGTGGGTGTTCGCATCG 61.503 55.000 0.00 0.00 38.69 3.84
1884 1898 0.238289 CTTGTGTGGGTGTTCGCATC 59.762 55.000 0.00 0.00 38.69 3.91
1885 1899 1.172180 CCTTGTGTGGGTGTTCGCAT 61.172 55.000 0.00 0.00 38.69 4.73
1886 1900 1.821759 CCTTGTGTGGGTGTTCGCA 60.822 57.895 0.00 0.00 0.00 5.10
1887 1901 0.533308 TACCTTGTGTGGGTGTTCGC 60.533 55.000 0.00 0.00 37.65 4.70
1888 1902 1.956297 TTACCTTGTGTGGGTGTTCG 58.044 50.000 0.00 0.00 37.65 3.95
1889 1903 3.181484 GGTTTTACCTTGTGTGGGTGTTC 60.181 47.826 0.00 0.00 37.65 3.18
1890 1904 2.761767 GGTTTTACCTTGTGTGGGTGTT 59.238 45.455 0.00 0.00 37.65 3.32
1891 1905 2.291670 TGGTTTTACCTTGTGTGGGTGT 60.292 45.455 0.00 0.00 39.58 4.16
1892 1906 2.100087 GTGGTTTTACCTTGTGTGGGTG 59.900 50.000 0.00 0.00 39.58 4.61
1893 1907 2.024751 AGTGGTTTTACCTTGTGTGGGT 60.025 45.455 0.00 0.00 39.58 4.51
1894 1908 2.621526 GAGTGGTTTTACCTTGTGTGGG 59.378 50.000 0.00 0.00 39.58 4.61
1895 1909 3.283751 TGAGTGGTTTTACCTTGTGTGG 58.716 45.455 0.00 0.00 39.58 4.17
1896 1910 4.156922 TGTTGAGTGGTTTTACCTTGTGTG 59.843 41.667 0.00 0.00 39.58 3.82
1897 1911 4.157105 GTGTTGAGTGGTTTTACCTTGTGT 59.843 41.667 0.00 0.00 39.58 3.72
1898 1912 4.439563 GGTGTTGAGTGGTTTTACCTTGTG 60.440 45.833 0.00 0.00 39.58 3.33
1899 1913 3.697542 GGTGTTGAGTGGTTTTACCTTGT 59.302 43.478 0.00 0.00 39.58 3.16
1900 1914 3.242936 CGGTGTTGAGTGGTTTTACCTTG 60.243 47.826 0.00 0.00 39.58 3.61
1901 1915 2.946990 CGGTGTTGAGTGGTTTTACCTT 59.053 45.455 0.00 0.00 39.58 3.50
1902 1916 2.171027 TCGGTGTTGAGTGGTTTTACCT 59.829 45.455 0.00 0.00 39.58 3.08
1903 1917 2.288729 GTCGGTGTTGAGTGGTTTTACC 59.711 50.000 0.00 0.00 39.22 2.85
1904 1918 2.937799 TGTCGGTGTTGAGTGGTTTTAC 59.062 45.455 0.00 0.00 0.00 2.01
1905 1919 3.263489 TGTCGGTGTTGAGTGGTTTTA 57.737 42.857 0.00 0.00 0.00 1.52
1906 1920 2.116827 TGTCGGTGTTGAGTGGTTTT 57.883 45.000 0.00 0.00 0.00 2.43
1907 1921 2.014128 CTTGTCGGTGTTGAGTGGTTT 58.986 47.619 0.00 0.00 0.00 3.27
1908 1922 1.208535 TCTTGTCGGTGTTGAGTGGTT 59.791 47.619 0.00 0.00 0.00 3.67
1909 1923 0.828022 TCTTGTCGGTGTTGAGTGGT 59.172 50.000 0.00 0.00 0.00 4.16
1910 1924 1.948104 TTCTTGTCGGTGTTGAGTGG 58.052 50.000 0.00 0.00 0.00 4.00
1911 1925 2.286418 GCTTTCTTGTCGGTGTTGAGTG 60.286 50.000 0.00 0.00 0.00 3.51
1936 1950 6.037940 TGCATCATTTTGTGAGAGAATAGCTC 59.962 38.462 0.00 0.00 40.92 4.09
1941 1955 6.989659 AGTTTGCATCATTTTGTGAGAGAAT 58.010 32.000 0.00 0.00 40.92 2.40
1942 1956 6.395426 AGTTTGCATCATTTTGTGAGAGAA 57.605 33.333 0.00 0.00 40.92 2.87
1950 1964 5.634859 GGAGTTGGTAGTTTGCATCATTTTG 59.365 40.000 0.00 0.00 0.00 2.44
1960 1974 3.368116 CGGGTCTAGGAGTTGGTAGTTTG 60.368 52.174 0.00 0.00 0.00 2.93
1963 1977 1.959028 GCGGGTCTAGGAGTTGGTAGT 60.959 57.143 0.00 0.00 0.00 2.73
1972 1986 1.389609 GGAACGATGCGGGTCTAGGA 61.390 60.000 0.00 0.00 0.00 2.94
1978 1992 1.451387 GGATTGGAACGATGCGGGT 60.451 57.895 0.00 0.00 0.00 5.28
1981 1995 3.903876 CAAGGATTGGAACGATGCG 57.096 52.632 0.00 0.00 43.94 4.73
1993 2007 1.561643 TCCTCAACGAGCTCAAGGAT 58.438 50.000 15.40 0.00 31.25 3.24
2019 2033 2.625737 AGACCGTTGATGAGCTTCATG 58.374 47.619 3.76 0.00 37.20 3.07
2023 2037 2.693069 CAGAAGACCGTTGATGAGCTT 58.307 47.619 0.00 0.00 0.00 3.74
2025 2039 0.723981 GCAGAAGACCGTTGATGAGC 59.276 55.000 0.00 0.00 0.00 4.26
2036 2050 0.741915 CGGAGGGAGTAGCAGAAGAC 59.258 60.000 0.00 0.00 0.00 3.01
2054 2068 1.711060 AACGCCTGTGTGTTCAACCG 61.711 55.000 0.00 0.00 41.20 4.44
2071 2085 1.269448 TCGCAATGGAAGCAAAGGAAC 59.731 47.619 0.00 0.00 0.00 3.62
2096 2110 0.172578 ACCTTCGTCATTGCGATCGA 59.827 50.000 21.57 0.00 40.76 3.59
2098 2112 1.324736 GACACCTTCGTCATTGCGATC 59.675 52.381 4.48 0.00 40.76 3.69
2100 2114 1.006825 CGACACCTTCGTCATTGCGA 61.007 55.000 0.00 0.14 43.24 5.10
2114 2128 2.165437 AGATCAAGAGAGGCTTCGACAC 59.835 50.000 0.00 0.00 33.60 3.67
2119 2133 4.692228 CTGGTAAGATCAAGAGAGGCTTC 58.308 47.826 0.00 0.00 33.60 3.86
2122 2136 2.169352 TGCTGGTAAGATCAAGAGAGGC 59.831 50.000 0.00 0.00 0.00 4.70
2135 2149 1.068895 TCGAAGACCGTTTGCTGGTAA 59.931 47.619 0.00 0.00 40.63 2.85
2137 2151 0.600255 CTCGAAGACCGTTTGCTGGT 60.600 55.000 0.00 0.00 44.10 4.00
2139 2153 0.784778 GACTCGAAGACCGTTTGCTG 59.215 55.000 0.00 0.00 39.75 4.41
2141 2155 0.784778 CAGACTCGAAGACCGTTTGC 59.215 55.000 0.00 0.00 39.75 3.68
2145 2159 1.581954 CTGCAGACTCGAAGACCGT 59.418 57.895 8.42 0.00 39.75 4.83
2146 2160 1.803519 GCTGCAGACTCGAAGACCG 60.804 63.158 20.43 0.00 40.25 4.79
2152 2166 1.830587 ATTGGTGGCTGCAGACTCGA 61.831 55.000 22.80 12.22 0.00 4.04
2154 2168 0.321919 TGATTGGTGGCTGCAGACTC 60.322 55.000 22.80 17.94 0.00 3.36
2157 2171 1.246056 GCTTGATTGGTGGCTGCAGA 61.246 55.000 20.43 0.00 0.00 4.26
2158 2172 1.214589 GCTTGATTGGTGGCTGCAG 59.785 57.895 10.11 10.11 0.00 4.41
2159 2173 0.901114 ATGCTTGATTGGTGGCTGCA 60.901 50.000 0.50 0.00 0.00 4.41
2161 2175 1.822990 AGAATGCTTGATTGGTGGCTG 59.177 47.619 0.00 0.00 0.00 4.85
2179 2193 2.697229 CAGTCCTCAGGTGCATGATAGA 59.303 50.000 0.00 0.00 0.00 1.98
2181 2195 2.432146 GACAGTCCTCAGGTGCATGATA 59.568 50.000 0.00 0.00 0.00 2.15
2192 2206 6.566079 AAATCTGGATATTGACAGTCCTCA 57.434 37.500 0.00 0.00 36.17 3.86
2194 2208 6.465035 GCCTAAATCTGGATATTGACAGTCCT 60.465 42.308 0.00 0.00 36.17 3.85
2197 2211 6.506538 AGCCTAAATCTGGATATTGACAGT 57.493 37.500 0.00 0.00 36.17 3.55
2198 2212 8.316946 TCATAGCCTAAATCTGGATATTGACAG 58.683 37.037 0.00 0.00 34.36 3.51
2201 2215 9.730705 CTTTCATAGCCTAAATCTGGATATTGA 57.269 33.333 0.00 0.00 34.36 2.57
2203 2217 8.572855 GCTTTCATAGCCTAAATCTGGATATT 57.427 34.615 0.00 0.00 44.48 1.28
2237 2251 2.918549 GCGTATATGCTCGTCAGGTCTG 60.919 54.545 9.78 0.00 0.00 3.51
2244 2258 2.401017 TCAGTGCGTATATGCTCGTC 57.599 50.000 17.56 6.27 35.36 4.20
2245 2259 2.460918 GTTCAGTGCGTATATGCTCGT 58.539 47.619 17.56 0.00 35.36 4.18
2247 2261 2.216488 CACGTTCAGTGCGTATATGCTC 59.784 50.000 17.56 13.89 44.72 4.26
2248 2262 2.193447 CACGTTCAGTGCGTATATGCT 58.807 47.619 17.56 0.00 44.72 3.79
2275 2289 2.758979 TCAGGAGGAAGATAACGTGGAC 59.241 50.000 0.00 0.00 0.00 4.02
2287 2301 4.074970 GCTTCATTTGTCTTCAGGAGGAA 58.925 43.478 0.00 0.00 0.00 3.36
2293 2307 2.666619 GCCGTGCTTCATTTGTCTTCAG 60.667 50.000 0.00 0.00 0.00 3.02
2296 2310 0.238289 CGCCGTGCTTCATTTGTCTT 59.762 50.000 0.00 0.00 0.00 3.01
2298 2312 0.237235 TTCGCCGTGCTTCATTTGTC 59.763 50.000 0.00 0.00 0.00 3.18
2299 2313 0.238289 CTTCGCCGTGCTTCATTTGT 59.762 50.000 0.00 0.00 0.00 2.83
2302 2316 2.040544 CCCTTCGCCGTGCTTCATT 61.041 57.895 0.00 0.00 0.00 2.57
2303 2317 2.436646 CCCTTCGCCGTGCTTCAT 60.437 61.111 0.00 0.00 0.00 2.57
2311 2325 4.760047 CAGGACCACCCTTCGCCG 62.760 72.222 0.00 0.00 44.85 6.46
2313 2327 0.035739 TTTACAGGACCACCCTTCGC 59.964 55.000 0.00 0.00 44.85 4.70
2323 2337 2.092914 AGCTAGGCATGGTTTACAGGAC 60.093 50.000 0.00 0.00 39.82 3.85
2337 2351 0.102481 TTCGGATCGTCAAGCTAGGC 59.898 55.000 0.00 0.00 0.00 3.93
2344 2358 2.409975 GTTTGGACTTCGGATCGTCAA 58.590 47.619 9.29 0.00 31.88 3.18
2345 2359 1.337447 GGTTTGGACTTCGGATCGTCA 60.337 52.381 9.29 0.00 31.88 4.35
2353 2367 2.403252 AGCATAGGGTTTGGACTTCG 57.597 50.000 0.00 0.00 0.00 3.79
2356 2370 2.238898 GGTGTAGCATAGGGTTTGGACT 59.761 50.000 0.00 0.00 0.00 3.85
2371 2385 0.955428 ACATGTGGCTTGCGGTGTAG 60.955 55.000 0.00 0.00 0.00 2.74
2373 2387 2.203337 ACATGTGGCTTGCGGTGT 60.203 55.556 0.00 0.00 0.00 4.16
2379 2393 2.034432 TGCAAGTTACACATGTGGCTTG 59.966 45.455 32.38 32.38 40.55 4.01
2380 2394 2.034558 GTGCAAGTTACACATGTGGCTT 59.965 45.455 28.64 23.48 37.96 4.35
2440 2454 2.017049 CAAGGATTAGAAAGGGTGCCG 58.983 52.381 0.00 0.00 0.00 5.69



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.