Multiple sequence alignment - TraesCS7D01G204200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G204200 chr7D 100.000 2423 0 0 1 2423 162114167 162116589 0.000000e+00 4475.0
1 TraesCS7D01G204200 chr7D 88.566 516 44 7 998 1501 162214614 162215126 1.590000e-171 612.0
2 TraesCS7D01G204200 chr7D 89.506 486 39 3 981 1457 162201374 162201856 2.660000e-169 604.0
3 TraesCS7D01G204200 chr7D 84.804 204 25 6 1602 1799 480822611 480822408 1.470000e-47 200.0
4 TraesCS7D01G204200 chr7D 94.017 117 7 0 1876 1992 595978377 595978493 6.880000e-41 178.0
5 TraesCS7D01G204200 chr7D 92.500 120 9 0 1874 1993 177118660 177118779 3.200000e-39 172.0
6 TraesCS7D01G204200 chr7D 95.522 67 2 1 2136 2201 162116241 162116307 3.290000e-19 106.0
7 TraesCS7D01G204200 chr7D 95.522 67 2 1 2075 2141 162116302 162116367 3.290000e-19 106.0
8 TraesCS7D01G204200 chr7A 90.493 1157 68 20 463 1610 163229263 163230386 0.000000e+00 1489.0
9 TraesCS7D01G204200 chr7A 89.881 504 48 2 998 1501 163353203 163353703 0.000000e+00 645.0
10 TraesCS7D01G204200 chr7A 86.716 542 47 9 985 1505 163360995 163361532 1.620000e-161 579.0
11 TraesCS7D01G204200 chr7A 89.713 418 39 3 1 417 163228849 163229263 4.590000e-147 531.0
12 TraesCS7D01G204200 chr7A 90.291 103 8 2 1781 1882 163230377 163230478 1.510000e-27 134.0
13 TraesCS7D01G204200 chr7B 90.568 1145 69 20 476 1613 124128951 124130063 0.000000e+00 1480.0
14 TraesCS7D01G204200 chr7B 88.994 527 39 9 981 1495 124360321 124360840 3.400000e-178 634.0
15 TraesCS7D01G204200 chr7B 88.224 535 40 6 981 1495 124257417 124257948 3.420000e-173 617.0
16 TraesCS7D01G204200 chr7B 81.906 724 78 32 741 1431 124548580 124549283 1.630000e-156 562.0
17 TraesCS7D01G204200 chr7B 88.172 465 40 11 985 1440 124531575 124532033 7.620000e-150 540.0
18 TraesCS7D01G204200 chr7B 88.000 75 5 3 1808 1882 124130074 124130144 4.290000e-13 86.1
19 TraesCS7D01G204200 chr5A 88.532 218 21 2 2185 2398 472082519 472082302 6.640000e-66 261.0
20 TraesCS7D01G204200 chr5A 86.772 189 17 5 1606 1786 7701099 7700911 1.140000e-48 204.0
21 TraesCS7D01G204200 chr3D 89.100 211 18 4 2185 2391 442760891 442760682 8.600000e-65 257.0
22 TraesCS7D01G204200 chr3D 92.500 120 9 0 1874 1993 341502406 341502525 3.200000e-39 172.0
23 TraesCS7D01G204200 chr4D 88.942 208 21 2 2185 2391 8879949 8880155 3.090000e-64 255.0
24 TraesCS7D01G204200 chr4D 85.500 200 18 7 1603 1793 35722491 35722294 5.280000e-47 198.0
25 TraesCS7D01G204200 chr5D 88.263 213 24 1 2181 2393 541940698 541940909 1.110000e-63 254.0
26 TraesCS7D01G204200 chr5D 88.889 207 19 4 2185 2389 458460804 458461008 4.000000e-63 252.0
27 TraesCS7D01G204200 chr5D 87.383 214 23 3 2185 2394 525393819 525393606 2.410000e-60 243.0
28 TraesCS7D01G204200 chr6D 87.387 222 24 3 2185 2406 362224308 362224525 4.000000e-63 252.0
29 TraesCS7D01G204200 chr6D 85.641 195 20 8 1603 1789 10733378 10733184 5.280000e-47 198.0
30 TraesCS7D01G204200 chr6D 86.170 188 18 5 1607 1787 72132171 72132357 1.900000e-46 196.0
31 TraesCS7D01G204200 chr6A 88.095 210 24 1 2185 2393 484721884 484721675 5.170000e-62 248.0
32 TraesCS7D01G204200 chr6A 93.103 116 8 0 1876 1991 17740005 17739890 1.150000e-38 171.0
33 TraesCS7D01G204200 chr4A 87.793 213 20 5 2185 2393 91734761 91734971 6.690000e-61 244.0
34 TraesCS7D01G204200 chr2B 82.069 290 46 5 2 289 705690448 705690733 2.410000e-60 243.0
35 TraesCS7D01G204200 chr1D 87.179 195 20 5 1598 1789 216353525 216353333 1.460000e-52 217.0
36 TraesCS7D01G204200 chr5B 86.702 188 20 5 1613 1796 616690120 616689934 1.140000e-48 204.0
37 TraesCS7D01G204200 chr5B 93.220 118 8 0 1876 1993 657593222 657593339 8.900000e-40 174.0
38 TraesCS7D01G204200 chr5B 93.103 116 8 0 1876 1991 245964798 245964683 1.150000e-38 171.0
39 TraesCS7D01G204200 chr1A 85.859 198 20 7 1604 1793 463291763 463291960 1.140000e-48 204.0
40 TraesCS7D01G204200 chr6B 86.486 185 19 5 1607 1785 176254528 176254344 5.280000e-47 198.0
41 TraesCS7D01G204200 chr6B 91.200 125 10 1 1872 1996 365063069 365062946 4.140000e-38 169.0
42 TraesCS7D01G204200 chr2D 94.068 118 6 1 1876 1992 9051579 9051696 6.880000e-41 178.0
43 TraesCS7D01G204200 chr2A 92.437 119 9 0 1873 1991 148025339 148025457 1.150000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G204200 chr7D 162114167 162116589 2422 False 1562.333333 4475 97.014667 1 2423 3 chr7D.!!$F5 2422
1 TraesCS7D01G204200 chr7D 162214614 162215126 512 False 612.000000 612 88.566000 998 1501 1 chr7D.!!$F2 503
2 TraesCS7D01G204200 chr7A 163228849 163230478 1629 False 718.000000 1489 90.165667 1 1882 3 chr7A.!!$F3 1881
3 TraesCS7D01G204200 chr7A 163353203 163353703 500 False 645.000000 645 89.881000 998 1501 1 chr7A.!!$F1 503
4 TraesCS7D01G204200 chr7A 163360995 163361532 537 False 579.000000 579 86.716000 985 1505 1 chr7A.!!$F2 520
5 TraesCS7D01G204200 chr7B 124128951 124130144 1193 False 783.050000 1480 89.284000 476 1882 2 chr7B.!!$F5 1406
6 TraesCS7D01G204200 chr7B 124360321 124360840 519 False 634.000000 634 88.994000 981 1495 1 chr7B.!!$F2 514
7 TraesCS7D01G204200 chr7B 124257417 124257948 531 False 617.000000 617 88.224000 981 1495 1 chr7B.!!$F1 514
8 TraesCS7D01G204200 chr7B 124548580 124549283 703 False 562.000000 562 81.906000 741 1431 1 chr7B.!!$F4 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 628 0.02877 GCTCCGTCGATCTCTGTCTG 59.971 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 2062 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.347490 CCCAACCTCAGGTCACCG 59.653 66.667 0.00 0.00 33.12 4.94
35 36 2.509336 GTCACCGTCGCCATGGAG 60.509 66.667 18.40 13.80 32.18 3.86
50 51 1.153549 GGAGACTTTGATCGCCGCT 60.154 57.895 0.00 0.00 0.00 5.52
106 107 3.814268 CCCCGCATGAAACGCCTG 61.814 66.667 0.00 0.00 0.00 4.85
110 111 2.099062 GCATGAAACGCCTGCTCG 59.901 61.111 0.00 0.00 33.15 5.03
111 112 2.787249 CATGAAACGCCTGCTCGG 59.213 61.111 0.00 0.00 0.00 4.63
138 139 3.199891 GGATACCGCGGCAACCAC 61.200 66.667 28.58 10.85 0.00 4.16
160 161 3.540211 CCATGGATCCTATGGCGTC 57.460 57.895 22.46 0.00 38.73 5.19
217 218 2.190578 GGCTGGGGATGGAACGAG 59.809 66.667 0.00 0.00 0.00 4.18
226 227 1.411216 GGATGGAACGAGGGGAGTCTA 60.411 57.143 0.00 0.00 0.00 2.59
240 241 0.756070 AGTCTAGCGGCTAGGGTTCC 60.756 60.000 30.82 16.46 35.03 3.62
274 275 4.292178 GCTCGAGGGGAGGCGATG 62.292 72.222 15.58 0.00 43.36 3.84
293 294 3.551407 GAGGGGTCGAGGGGATGC 61.551 72.222 0.00 0.00 0.00 3.91
296 297 2.764128 GGGTCGAGGGGATGCTGA 60.764 66.667 0.00 0.00 0.00 4.26
323 324 4.314522 TCCCTCATGTATTGCCTTTTCA 57.685 40.909 0.00 0.00 0.00 2.69
326 327 5.360714 TCCCTCATGTATTGCCTTTTCAATC 59.639 40.000 0.00 0.00 37.75 2.67
344 345 2.280797 TGTGCACCTCCTTGTCGC 60.281 61.111 15.69 0.00 0.00 5.19
376 377 4.849329 CTCGTGCGCCGGTCCTAC 62.849 72.222 16.35 0.29 37.11 3.18
387 388 3.304794 CGCCGGTCCTACAAAATTTCAAA 60.305 43.478 1.90 0.00 0.00 2.69
402 403 8.819974 CAAAATTTCAAATGCTTGTAGTTGACT 58.180 29.630 1.51 0.00 34.78 3.41
403 404 8.579682 AAATTTCAAATGCTTGTAGTTGACTC 57.420 30.769 1.51 0.00 34.78 3.36
417 418 7.506114 TGTAGTTGACTCTAAGTGGTTCATTT 58.494 34.615 0.00 0.00 0.00 2.32
418 419 7.990886 TGTAGTTGACTCTAAGTGGTTCATTTT 59.009 33.333 0.00 0.00 0.00 1.82
419 420 7.264373 AGTTGACTCTAAGTGGTTCATTTTG 57.736 36.000 0.00 0.00 0.00 2.44
420 421 7.054124 AGTTGACTCTAAGTGGTTCATTTTGA 58.946 34.615 0.00 0.00 0.00 2.69
421 422 7.227512 AGTTGACTCTAAGTGGTTCATTTTGAG 59.772 37.037 10.88 10.88 38.25 3.02
422 423 6.591935 TGACTCTAAGTGGTTCATTTTGAGT 58.408 36.000 15.42 15.42 43.71 3.41
423 424 7.054124 TGACTCTAAGTGGTTCATTTTGAGTT 58.946 34.615 16.13 5.95 42.27 3.01
424 425 8.208224 TGACTCTAAGTGGTTCATTTTGAGTTA 58.792 33.333 16.13 11.88 42.27 2.24
425 426 9.220767 GACTCTAAGTGGTTCATTTTGAGTTAT 57.779 33.333 16.13 1.30 42.27 1.89
431 432 9.965824 AAGTGGTTCATTTTGAGTTATACTTTG 57.034 29.630 0.00 0.00 0.00 2.77
432 433 9.131791 AGTGGTTCATTTTGAGTTATACTTTGT 57.868 29.630 0.00 0.00 0.00 2.83
433 434 9.180678 GTGGTTCATTTTGAGTTATACTTTGTG 57.819 33.333 0.00 0.00 0.00 3.33
434 435 8.908903 TGGTTCATTTTGAGTTATACTTTGTGT 58.091 29.630 0.00 0.00 0.00 3.72
435 436 9.744468 GGTTCATTTTGAGTTATACTTTGTGTT 57.256 29.630 0.00 0.00 0.00 3.32
443 444 9.990360 TTGAGTTATACTTTGTGTTACTCATGA 57.010 29.630 13.78 0.00 38.69 3.07
450 451 9.896645 ATACTTTGTGTTACTCATGATGAAGAT 57.103 29.630 0.00 0.00 0.00 2.40
451 452 8.261492 ACTTTGTGTTACTCATGATGAAGATC 57.739 34.615 0.00 0.00 0.00 2.75
452 453 8.099537 ACTTTGTGTTACTCATGATGAAGATCT 58.900 33.333 0.00 0.00 0.00 2.75
453 454 8.853077 TTTGTGTTACTCATGATGAAGATCTT 57.147 30.769 7.95 7.95 0.00 2.40
454 455 8.853077 TTGTGTTACTCATGATGAAGATCTTT 57.147 30.769 9.87 0.00 0.00 2.52
455 456 8.260270 TGTGTTACTCATGATGAAGATCTTTG 57.740 34.615 9.87 3.54 0.00 2.77
456 457 7.879677 TGTGTTACTCATGATGAAGATCTTTGT 59.120 33.333 9.87 1.12 0.00 2.83
457 458 9.371136 GTGTTACTCATGATGAAGATCTTTGTA 57.629 33.333 9.87 0.00 0.00 2.41
458 459 9.371136 TGTTACTCATGATGAAGATCTTTGTAC 57.629 33.333 9.87 0.00 0.00 2.90
459 460 9.593134 GTTACTCATGATGAAGATCTTTGTACT 57.407 33.333 9.87 0.00 0.00 2.73
460 461 9.591792 TTACTCATGATGAAGATCTTTGTACTG 57.408 33.333 9.87 5.79 0.00 2.74
461 462 6.538021 ACTCATGATGAAGATCTTTGTACTGC 59.462 38.462 9.87 0.00 0.00 4.40
462 463 6.647229 TCATGATGAAGATCTTTGTACTGCT 58.353 36.000 9.87 0.00 0.00 4.24
512 515 7.780271 AGCATAAAGGACTTTATTTAAGGAGGG 59.220 37.037 13.18 2.84 42.11 4.30
548 553 2.007049 GCCGGATACATTCGCCCATAG 61.007 57.143 5.05 0.00 0.00 2.23
620 625 2.473760 CCGCTCCGTCGATCTCTGT 61.474 63.158 0.00 0.00 0.00 3.41
621 626 1.010574 CGCTCCGTCGATCTCTGTC 60.011 63.158 0.00 0.00 0.00 3.51
622 627 1.433053 CGCTCCGTCGATCTCTGTCT 61.433 60.000 0.00 0.00 0.00 3.41
623 628 0.028770 GCTCCGTCGATCTCTGTCTG 59.971 60.000 0.00 0.00 0.00 3.51
624 629 1.657822 CTCCGTCGATCTCTGTCTGA 58.342 55.000 0.00 0.00 0.00 3.27
630 635 3.184379 CGTCGATCTCTGTCTGATCTCTC 59.816 52.174 0.00 0.00 38.43 3.20
631 636 3.498397 GTCGATCTCTGTCTGATCTCTCC 59.502 52.174 0.00 0.00 38.43 3.71
661 666 2.861935 CCGAGTAAACAACTGAACGTGT 59.138 45.455 0.00 0.00 39.07 4.49
664 680 2.353579 AGTAAACAACTGAACGTGTGGC 59.646 45.455 0.00 0.00 36.93 5.01
665 681 1.169577 AAACAACTGAACGTGTGGCA 58.830 45.000 0.00 0.00 0.00 4.92
666 682 0.450184 AACAACTGAACGTGTGGCAC 59.550 50.000 11.55 11.55 0.00 5.01
667 683 0.392461 ACAACTGAACGTGTGGCACT 60.392 50.000 19.83 0.00 31.34 4.40
668 684 1.134640 ACAACTGAACGTGTGGCACTA 60.135 47.619 19.83 2.23 31.34 2.74
669 685 1.526887 CAACTGAACGTGTGGCACTAG 59.473 52.381 19.83 14.55 31.34 2.57
670 686 1.037493 ACTGAACGTGTGGCACTAGA 58.963 50.000 19.83 0.00 31.34 2.43
671 687 1.000163 ACTGAACGTGTGGCACTAGAG 60.000 52.381 19.83 9.60 31.34 2.43
672 688 0.317160 TGAACGTGTGGCACTAGAGG 59.683 55.000 19.83 6.89 31.34 3.69
673 689 0.601558 GAACGTGTGGCACTAGAGGA 59.398 55.000 19.83 0.00 31.34 3.71
674 690 0.317479 AACGTGTGGCACTAGAGGAC 59.683 55.000 19.83 6.32 31.34 3.85
745 761 3.343788 CTCCGTCGACCAGCTCACC 62.344 68.421 10.58 0.00 0.00 4.02
822 841 1.675641 ATTCGACAGCAACAGCCCC 60.676 57.895 0.00 0.00 0.00 5.80
850 874 3.123804 CACGCTGCGATTCCTATAAAGT 58.876 45.455 30.47 0.00 0.00 2.66
883 935 1.142870 CTCCTTCCTCCAACCAACACA 59.857 52.381 0.00 0.00 0.00 3.72
884 936 1.142870 TCCTTCCTCCAACCAACACAG 59.857 52.381 0.00 0.00 0.00 3.66
885 937 0.954452 CTTCCTCCAACCAACACAGC 59.046 55.000 0.00 0.00 0.00 4.40
886 938 0.257328 TTCCTCCAACCAACACAGCA 59.743 50.000 0.00 0.00 0.00 4.41
887 939 0.179020 TCCTCCAACCAACACAGCAG 60.179 55.000 0.00 0.00 0.00 4.24
888 940 0.179020 CCTCCAACCAACACAGCAGA 60.179 55.000 0.00 0.00 0.00 4.26
891 943 0.664761 CCAACCAACACAGCAGACAG 59.335 55.000 0.00 0.00 0.00 3.51
1191 1252 2.101582 GCAGATGACCATCTTCTACGGT 59.898 50.000 9.63 0.00 45.31 4.83
1400 1477 0.872021 GGCGATGCGTTCTCCTGTAG 60.872 60.000 0.00 0.00 0.00 2.74
1453 1547 2.995283 TGCGTAGTAGAGTAGCCTGAA 58.005 47.619 0.00 0.00 0.00 3.02
1486 1580 3.894427 TCCATGTAAATGTGTGGCTGTTT 59.106 39.130 0.00 0.00 0.00 2.83
1530 1624 8.937634 ATTATGATCAGAAAATTTTGCTGTCC 57.062 30.769 15.31 9.70 0.00 4.02
1534 1628 5.850557 TCAGAAAATTTTGCTGTCCTTGA 57.149 34.783 15.31 0.00 0.00 3.02
1546 1640 3.068024 GCTGTCCTTGATTTGACCAACAA 59.932 43.478 0.00 0.00 36.65 2.83
1575 1669 1.203287 GAATTGGCTTGACTGGCTTCC 59.797 52.381 0.00 0.00 0.00 3.46
1595 1689 7.203218 GCTTCCTTTATTTATGACCAATCCAC 58.797 38.462 0.00 0.00 0.00 4.02
1666 1760 8.450578 AAAAATGTCACATCTAAACTCTCACA 57.549 30.769 0.00 0.00 0.00 3.58
1667 1761 8.450578 AAAATGTCACATCTAAACTCTCACAA 57.549 30.769 0.00 0.00 0.00 3.33
1668 1762 8.450578 AAATGTCACATCTAAACTCTCACAAA 57.549 30.769 0.00 0.00 0.00 2.83
1669 1763 8.627208 AATGTCACATCTAAACTCTCACAAAT 57.373 30.769 0.00 0.00 0.00 2.32
1670 1764 9.725019 AATGTCACATCTAAACTCTCACAAATA 57.275 29.630 0.00 0.00 0.00 1.40
1671 1765 9.896645 ATGTCACATCTAAACTCTCACAAATAT 57.103 29.630 0.00 0.00 0.00 1.28
1732 1826 9.480053 AAAAATCACAAACAGAATGGACATTAG 57.520 29.630 0.00 0.00 43.62 1.73
1733 1827 7.765695 AATCACAAACAGAATGGACATTAGT 57.234 32.000 0.00 0.00 43.62 2.24
1734 1828 7.765695 ATCACAAACAGAATGGACATTAGTT 57.234 32.000 0.00 3.97 43.62 2.24
1735 1829 7.581213 TCACAAACAGAATGGACATTAGTTT 57.419 32.000 16.08 16.08 43.62 2.66
1736 1830 8.684386 TCACAAACAGAATGGACATTAGTTTA 57.316 30.769 19.03 8.70 43.62 2.01
1737 1831 8.783093 TCACAAACAGAATGGACATTAGTTTAG 58.217 33.333 19.03 16.06 43.62 1.85
1738 1832 8.783093 CACAAACAGAATGGACATTAGTTTAGA 58.217 33.333 19.03 0.00 43.62 2.10
1739 1833 9.520515 ACAAACAGAATGGACATTAGTTTAGAT 57.479 29.630 19.03 10.79 43.62 1.98
1740 1834 9.778993 CAAACAGAATGGACATTAGTTTAGATG 57.221 33.333 19.03 10.26 43.62 2.90
1741 1835 9.520515 AAACAGAATGGACATTAGTTTAGATGT 57.479 29.630 18.47 0.00 43.62 3.06
1742 1836 8.498054 ACAGAATGGACATTAGTTTAGATGTG 57.502 34.615 0.00 0.00 43.62 3.21
1743 1837 8.321353 ACAGAATGGACATTAGTTTAGATGTGA 58.679 33.333 0.00 0.00 43.62 3.58
1744 1838 8.607459 CAGAATGGACATTAGTTTAGATGTGAC 58.393 37.037 0.00 0.00 36.67 3.67
1745 1839 8.321353 AGAATGGACATTAGTTTAGATGTGACA 58.679 33.333 0.00 0.00 36.67 3.58
1746 1840 9.113838 GAATGGACATTAGTTTAGATGTGACAT 57.886 33.333 0.00 0.00 36.67 3.06
1749 1843 9.378551 TGGACATTAGTTTAGATGTGACATAAC 57.621 33.333 0.00 0.00 36.67 1.89
1750 1844 9.601217 GGACATTAGTTTAGATGTGACATAACT 57.399 33.333 14.47 14.47 36.67 2.24
1782 1876 8.572828 CATCTAGATGTGTCATAAACAGACTC 57.427 38.462 22.42 0.00 38.97 3.36
1872 1966 2.436469 ATGCGCGATGACTTGGCA 60.436 55.556 12.10 0.00 38.09 4.92
1877 1971 0.370273 CGCGATGACTTGGCAACTAC 59.630 55.000 0.00 0.00 37.61 2.73
1882 1976 1.729586 TGACTTGGCAACTACTCCCT 58.270 50.000 0.00 0.00 37.61 4.20
1883 1977 1.623811 TGACTTGGCAACTACTCCCTC 59.376 52.381 0.00 0.00 37.61 4.30
1884 1978 1.903183 GACTTGGCAACTACTCCCTCT 59.097 52.381 0.00 0.00 37.61 3.69
1885 1979 1.625818 ACTTGGCAACTACTCCCTCTG 59.374 52.381 0.00 0.00 37.61 3.35
1886 1980 1.625818 CTTGGCAACTACTCCCTCTGT 59.374 52.381 0.00 0.00 37.61 3.41
1887 1981 1.267121 TGGCAACTACTCCCTCTGTC 58.733 55.000 0.00 0.00 37.61 3.51
1888 1982 0.173708 GGCAACTACTCCCTCTGTCG 59.826 60.000 0.00 0.00 0.00 4.35
1889 1983 1.174783 GCAACTACTCCCTCTGTCGA 58.825 55.000 0.00 0.00 0.00 4.20
1890 1984 1.133407 GCAACTACTCCCTCTGTCGAG 59.867 57.143 0.00 0.00 37.01 4.04
1891 1985 2.712709 CAACTACTCCCTCTGTCGAGA 58.287 52.381 0.00 0.00 39.74 4.04
1892 1986 3.082548 CAACTACTCCCTCTGTCGAGAA 58.917 50.000 0.00 0.00 39.74 2.87
1893 1987 3.436577 ACTACTCCCTCTGTCGAGAAA 57.563 47.619 0.00 0.00 39.74 2.52
1894 1988 3.970842 ACTACTCCCTCTGTCGAGAAAT 58.029 45.455 0.00 0.00 39.74 2.17
1895 1989 5.113446 ACTACTCCCTCTGTCGAGAAATA 57.887 43.478 0.00 0.00 39.74 1.40
1896 1990 4.883006 ACTACTCCCTCTGTCGAGAAATAC 59.117 45.833 0.00 0.00 39.74 1.89
1897 1991 3.970842 ACTCCCTCTGTCGAGAAATACT 58.029 45.455 0.00 0.00 39.74 2.12
1898 1992 4.345854 ACTCCCTCTGTCGAGAAATACTT 58.654 43.478 0.00 0.00 39.74 2.24
1899 1993 4.158764 ACTCCCTCTGTCGAGAAATACTTG 59.841 45.833 0.00 0.00 39.74 3.16
1900 1994 4.087182 TCCCTCTGTCGAGAAATACTTGT 58.913 43.478 0.00 0.00 39.74 3.16
1901 1995 4.158025 TCCCTCTGTCGAGAAATACTTGTC 59.842 45.833 0.00 0.00 39.74 3.18
1902 1996 4.158764 CCCTCTGTCGAGAAATACTTGTCT 59.841 45.833 0.00 0.00 39.74 3.41
1903 1997 5.336849 CCCTCTGTCGAGAAATACTTGTCTT 60.337 44.000 0.00 0.00 39.74 3.01
1904 1998 6.127703 CCCTCTGTCGAGAAATACTTGTCTTA 60.128 42.308 0.00 0.00 39.74 2.10
1905 1999 6.970043 CCTCTGTCGAGAAATACTTGTCTTAG 59.030 42.308 0.00 0.00 39.74 2.18
1906 2000 7.148222 CCTCTGTCGAGAAATACTTGTCTTAGA 60.148 40.741 0.00 0.00 39.74 2.10
1907 2001 8.107399 TCTGTCGAGAAATACTTGTCTTAGAA 57.893 34.615 0.00 0.00 0.00 2.10
1908 2002 8.573885 TCTGTCGAGAAATACTTGTCTTAGAAA 58.426 33.333 0.00 0.00 0.00 2.52
1909 2003 9.360093 CTGTCGAGAAATACTTGTCTTAGAAAT 57.640 33.333 0.00 0.00 0.00 2.17
1910 2004 9.140286 TGTCGAGAAATACTTGTCTTAGAAATG 57.860 33.333 0.00 0.00 0.00 2.32
1911 2005 9.355215 GTCGAGAAATACTTGTCTTAGAAATGA 57.645 33.333 0.00 0.00 0.00 2.57
1912 2006 9.923143 TCGAGAAATACTTGTCTTAGAAATGAA 57.077 29.630 0.00 0.00 0.00 2.57
1965 2059 7.825331 AGTCTAGATACAATCATTTCGAGGA 57.175 36.000 0.00 0.00 0.00 3.71
1966 2060 7.653647 AGTCTAGATACAATCATTTCGAGGAC 58.346 38.462 0.00 0.00 0.00 3.85
1967 2061 7.285629 AGTCTAGATACAATCATTTCGAGGACA 59.714 37.037 0.00 0.00 0.00 4.02
1968 2062 7.921214 GTCTAGATACAATCATTTCGAGGACAA 59.079 37.037 0.00 0.00 0.00 3.18
1969 2063 8.138074 TCTAGATACAATCATTTCGAGGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
1970 2064 6.644347 AGATACAATCATTTCGAGGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
1971 2065 7.782049 AGATACAATCATTTCGAGGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
1972 2066 8.424918 AGATACAATCATTTCGAGGACAAGTAT 58.575 33.333 0.00 0.00 0.00 2.12
1973 2067 8.964476 ATACAATCATTTCGAGGACAAGTATT 57.036 30.769 0.00 0.00 0.00 1.89
1974 2068 7.687941 ACAATCATTTCGAGGACAAGTATTT 57.312 32.000 0.00 0.00 0.00 1.40
1975 2069 7.752695 ACAATCATTTCGAGGACAAGTATTTC 58.247 34.615 0.00 0.00 0.00 2.17
1976 2070 6.927294 ATCATTTCGAGGACAAGTATTTCC 57.073 37.500 0.00 0.00 0.00 3.13
1977 2071 4.868171 TCATTTCGAGGACAAGTATTTCCG 59.132 41.667 0.00 0.00 36.95 4.30
1978 2072 2.953466 TCGAGGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 36.95 5.14
1979 2073 2.449464 TCGAGGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 36.95 5.14
1980 2074 2.165030 TCGAGGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 36.95 4.79
1981 2075 2.537401 GAGGACAAGTATTTCCGGACG 58.463 52.381 1.83 0.00 36.95 4.79
1982 2076 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
1983 2077 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
1984 2078 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
1985 2079 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1986 2080 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1987 2081 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1988 2082 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1989 2083 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1990 2084 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1991 2085 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
1992 2086 0.032813 TTCCGGACGGAGGGAGTATT 60.033 55.000 13.64 0.00 46.06 1.89
1993 2087 0.466922 TCCGGACGGAGGGAGTATTC 60.467 60.000 9.76 0.00 39.76 1.75
1994 2088 0.467659 CCGGACGGAGGGAGTATTCT 60.468 60.000 4.40 0.00 37.50 2.40
1995 2089 0.953003 CGGACGGAGGGAGTATTCTC 59.047 60.000 0.00 0.00 39.76 2.87
2005 2099 1.941325 GAGTATTCTCCACTTGGCCG 58.059 55.000 0.00 0.00 34.87 6.13
2006 2100 1.207329 GAGTATTCTCCACTTGGCCGT 59.793 52.381 0.00 0.00 34.87 5.68
2007 2101 1.066143 AGTATTCTCCACTTGGCCGTG 60.066 52.381 0.00 0.07 34.44 4.94
2008 2102 0.981183 TATTCTCCACTTGGCCGTGT 59.019 50.000 9.57 2.47 33.07 4.49
2009 2103 0.606401 ATTCTCCACTTGGCCGTGTG 60.606 55.000 17.80 17.80 33.07 3.82
2020 2114 2.436646 CCGTGTGGGCAGATGGAC 60.437 66.667 0.00 0.00 32.88 4.02
2021 2115 2.347114 CGTGTGGGCAGATGGACA 59.653 61.111 0.00 0.00 0.00 4.02
2022 2116 2.034879 CGTGTGGGCAGATGGACAC 61.035 63.158 0.00 0.00 36.23 3.67
2023 2117 2.034879 GTGTGGGCAGATGGACACG 61.035 63.158 0.00 0.00 36.67 4.49
2024 2118 2.213513 TGTGGGCAGATGGACACGA 61.214 57.895 0.00 0.00 36.67 4.35
2025 2119 1.448540 GTGGGCAGATGGACACGAG 60.449 63.158 0.00 0.00 0.00 4.18
2026 2120 2.512515 GGGCAGATGGACACGAGC 60.513 66.667 0.00 0.00 0.00 5.03
2027 2121 2.265739 GGCAGATGGACACGAGCA 59.734 61.111 0.00 0.00 0.00 4.26
2028 2122 1.153289 GGCAGATGGACACGAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
2029 2123 1.156645 GGCAGATGGACACGAGCATC 61.157 60.000 0.00 0.00 0.00 3.91
2030 2124 0.179089 GCAGATGGACACGAGCATCT 60.179 55.000 0.00 0.00 35.04 2.90
2031 2125 1.067669 GCAGATGGACACGAGCATCTA 59.932 52.381 0.00 0.00 33.57 1.98
2032 2126 2.736978 CAGATGGACACGAGCATCTAC 58.263 52.381 0.00 0.00 33.57 2.59
2033 2127 2.360483 CAGATGGACACGAGCATCTACT 59.640 50.000 0.00 0.00 33.57 2.57
2034 2128 3.565902 CAGATGGACACGAGCATCTACTA 59.434 47.826 0.00 0.00 33.57 1.82
2035 2129 3.566322 AGATGGACACGAGCATCTACTAC 59.434 47.826 0.00 0.00 33.17 2.73
2036 2130 2.718563 TGGACACGAGCATCTACTACA 58.281 47.619 0.00 0.00 0.00 2.74
2037 2131 3.086282 TGGACACGAGCATCTACTACAA 58.914 45.455 0.00 0.00 0.00 2.41
2038 2132 3.119602 TGGACACGAGCATCTACTACAAC 60.120 47.826 0.00 0.00 0.00 3.32
2039 2133 3.436496 GACACGAGCATCTACTACAACC 58.564 50.000 0.00 0.00 0.00 3.77
2040 2134 2.165845 ACACGAGCATCTACTACAACCC 59.834 50.000 0.00 0.00 0.00 4.11
2041 2135 1.755380 ACGAGCATCTACTACAACCCC 59.245 52.381 0.00 0.00 0.00 4.95
2042 2136 1.754803 CGAGCATCTACTACAACCCCA 59.245 52.381 0.00 0.00 0.00 4.96
2043 2137 2.365617 CGAGCATCTACTACAACCCCAT 59.634 50.000 0.00 0.00 0.00 4.00
2044 2138 3.733337 GAGCATCTACTACAACCCCATG 58.267 50.000 0.00 0.00 0.00 3.66
2045 2139 2.158755 AGCATCTACTACAACCCCATGC 60.159 50.000 0.00 0.00 36.27 4.06
2046 2140 2.851195 CATCTACTACAACCCCATGCC 58.149 52.381 0.00 0.00 0.00 4.40
2047 2141 2.263895 TCTACTACAACCCCATGCCT 57.736 50.000 0.00 0.00 0.00 4.75
2048 2142 2.116238 TCTACTACAACCCCATGCCTC 58.884 52.381 0.00 0.00 0.00 4.70
2049 2143 1.837439 CTACTACAACCCCATGCCTCA 59.163 52.381 0.00 0.00 0.00 3.86
2050 2144 1.072266 ACTACAACCCCATGCCTCAA 58.928 50.000 0.00 0.00 0.00 3.02
2051 2145 1.427368 ACTACAACCCCATGCCTCAAA 59.573 47.619 0.00 0.00 0.00 2.69
2052 2146 1.818674 CTACAACCCCATGCCTCAAAC 59.181 52.381 0.00 0.00 0.00 2.93
2053 2147 1.178534 ACAACCCCATGCCTCAAACG 61.179 55.000 0.00 0.00 0.00 3.60
2054 2148 1.152830 AACCCCATGCCTCAAACGT 59.847 52.632 0.00 0.00 0.00 3.99
2055 2149 0.893727 AACCCCATGCCTCAAACGTC 60.894 55.000 0.00 0.00 0.00 4.34
2056 2150 2.046285 CCCCATGCCTCAAACGTCC 61.046 63.158 0.00 0.00 0.00 4.79
2057 2151 1.002134 CCCATGCCTCAAACGTCCT 60.002 57.895 0.00 0.00 0.00 3.85
2058 2152 0.251916 CCCATGCCTCAAACGTCCTA 59.748 55.000 0.00 0.00 0.00 2.94
2059 2153 1.134098 CCCATGCCTCAAACGTCCTAT 60.134 52.381 0.00 0.00 0.00 2.57
2060 2154 2.213499 CCATGCCTCAAACGTCCTATC 58.787 52.381 0.00 0.00 0.00 2.08
2061 2155 2.213499 CATGCCTCAAACGTCCTATCC 58.787 52.381 0.00 0.00 0.00 2.59
2062 2156 0.174845 TGCCTCAAACGTCCTATCCG 59.825 55.000 0.00 0.00 0.00 4.18
2063 2157 0.458669 GCCTCAAACGTCCTATCCGA 59.541 55.000 0.00 0.00 0.00 4.55
2064 2158 1.801765 GCCTCAAACGTCCTATCCGAC 60.802 57.143 0.00 0.00 0.00 4.79
2065 2159 1.475280 CCTCAAACGTCCTATCCGACA 59.525 52.381 0.00 0.00 32.74 4.35
2066 2160 2.479730 CCTCAAACGTCCTATCCGACAG 60.480 54.545 0.00 0.00 32.74 3.51
2067 2161 1.135199 TCAAACGTCCTATCCGACAGC 60.135 52.381 0.00 0.00 32.74 4.40
2068 2162 0.175073 AAACGTCCTATCCGACAGCC 59.825 55.000 0.00 0.00 32.74 4.85
2069 2163 1.673808 AACGTCCTATCCGACAGCCC 61.674 60.000 0.00 0.00 32.74 5.19
2070 2164 2.728817 GTCCTATCCGACAGCCCG 59.271 66.667 0.00 0.00 32.74 6.13
2077 2171 4.742201 CCGACAGCCCGGTCACTG 62.742 72.222 13.22 13.22 44.23 3.66
2078 2172 3.680786 CGACAGCCCGGTCACTGA 61.681 66.667 19.75 0.00 37.66 3.41
2079 2173 2.262915 GACAGCCCGGTCACTGAG 59.737 66.667 19.75 0.00 37.73 3.35
2080 2174 2.203640 ACAGCCCGGTCACTGAGA 60.204 61.111 19.75 0.00 37.35 3.27
2081 2175 1.816863 GACAGCCCGGTCACTGAGAA 61.817 60.000 19.75 0.00 37.73 2.87
2082 2176 1.194781 ACAGCCCGGTCACTGAGAAT 61.195 55.000 19.75 0.00 37.35 2.40
2083 2177 0.824109 CAGCCCGGTCACTGAGAATA 59.176 55.000 10.08 0.00 35.90 1.75
2084 2178 1.207089 CAGCCCGGTCACTGAGAATAA 59.793 52.381 10.08 0.00 35.90 1.40
2085 2179 1.906574 AGCCCGGTCACTGAGAATAAA 59.093 47.619 0.00 0.00 0.00 1.40
2086 2180 2.304761 AGCCCGGTCACTGAGAATAAAA 59.695 45.455 0.00 0.00 0.00 1.52
2087 2181 3.078837 GCCCGGTCACTGAGAATAAAAA 58.921 45.455 0.00 0.00 0.00 1.94
2106 2200 5.784578 AAAAAGACCACCCAACTGTAATC 57.215 39.130 0.00 0.00 0.00 1.75
2107 2201 3.434940 AAGACCACCCAACTGTAATCC 57.565 47.619 0.00 0.00 0.00 3.01
2108 2202 2.632537 AGACCACCCAACTGTAATCCT 58.367 47.619 0.00 0.00 0.00 3.24
2109 2203 2.572104 AGACCACCCAACTGTAATCCTC 59.428 50.000 0.00 0.00 0.00 3.71
2110 2204 2.304761 GACCACCCAACTGTAATCCTCA 59.695 50.000 0.00 0.00 0.00 3.86
2111 2205 2.919602 ACCACCCAACTGTAATCCTCAT 59.080 45.455 0.00 0.00 0.00 2.90
2112 2206 3.333680 ACCACCCAACTGTAATCCTCATT 59.666 43.478 0.00 0.00 0.00 2.57
2113 2207 4.202673 ACCACCCAACTGTAATCCTCATTT 60.203 41.667 0.00 0.00 0.00 2.32
2114 2208 4.772100 CCACCCAACTGTAATCCTCATTTT 59.228 41.667 0.00 0.00 0.00 1.82
2115 2209 5.336690 CCACCCAACTGTAATCCTCATTTTG 60.337 44.000 0.00 0.00 0.00 2.44
2116 2210 5.243730 CACCCAACTGTAATCCTCATTTTGT 59.756 40.000 0.00 0.00 0.00 2.83
2117 2211 5.476945 ACCCAACTGTAATCCTCATTTTGTC 59.523 40.000 0.00 0.00 0.00 3.18
2118 2212 5.105756 CCCAACTGTAATCCTCATTTTGTCC 60.106 44.000 0.00 0.00 0.00 4.02
2119 2213 5.391950 CCAACTGTAATCCTCATTTTGTCCG 60.392 44.000 0.00 0.00 0.00 4.79
2120 2214 4.261801 ACTGTAATCCTCATTTTGTCCGG 58.738 43.478 0.00 0.00 0.00 5.14
2121 2215 4.019681 ACTGTAATCCTCATTTTGTCCGGA 60.020 41.667 0.00 0.00 0.00 5.14
2122 2216 4.912586 TGTAATCCTCATTTTGTCCGGAA 58.087 39.130 5.23 0.00 0.00 4.30
2123 2217 5.317808 TGTAATCCTCATTTTGTCCGGAAA 58.682 37.500 5.23 0.00 0.00 3.13
2124 2218 5.949354 TGTAATCCTCATTTTGTCCGGAAAT 59.051 36.000 5.23 0.00 0.00 2.17
2125 2219 5.582689 AATCCTCATTTTGTCCGGAAATC 57.417 39.130 5.23 0.00 0.00 2.17
2126 2220 4.027674 TCCTCATTTTGTCCGGAAATCA 57.972 40.909 5.23 0.00 0.00 2.57
2127 2221 4.402829 TCCTCATTTTGTCCGGAAATCAA 58.597 39.130 5.23 3.25 0.00 2.57
2128 2222 4.217550 TCCTCATTTTGTCCGGAAATCAAC 59.782 41.667 5.23 0.00 0.00 3.18
2129 2223 4.218417 CCTCATTTTGTCCGGAAATCAACT 59.782 41.667 5.23 0.00 0.00 3.16
2130 2224 5.414454 CCTCATTTTGTCCGGAAATCAACTA 59.586 40.000 5.23 0.00 0.00 2.24
2131 2225 6.403636 CCTCATTTTGTCCGGAAATCAACTAG 60.404 42.308 5.23 0.00 0.00 2.57
2132 2226 6.001460 TCATTTTGTCCGGAAATCAACTAGT 58.999 36.000 5.23 0.00 0.00 2.57
2133 2227 6.488683 TCATTTTGTCCGGAAATCAACTAGTT 59.511 34.615 5.23 1.12 0.00 2.24
2134 2228 7.662258 TCATTTTGTCCGGAAATCAACTAGTTA 59.338 33.333 5.23 0.00 0.00 2.24
2135 2229 7.804843 TTTTGTCCGGAAATCAACTAGTTAA 57.195 32.000 5.23 0.00 0.00 2.01
2136 2230 6.790285 TTGTCCGGAAATCAACTAGTTAAC 57.210 37.500 5.23 0.00 0.00 2.01
2137 2231 6.105397 TGTCCGGAAATCAACTAGTTAACT 57.895 37.500 5.23 13.68 0.00 2.24
2138 2232 5.929992 TGTCCGGAAATCAACTAGTTAACTG 59.070 40.000 18.56 10.41 0.00 3.16
2139 2233 6.161381 GTCCGGAAATCAACTAGTTAACTGA 58.839 40.000 18.56 8.00 0.00 3.41
2140 2234 6.310711 GTCCGGAAATCAACTAGTTAACTGAG 59.689 42.308 18.56 13.02 0.00 3.35
2141 2235 6.209986 TCCGGAAATCAACTAGTTAACTGAGA 59.790 38.462 18.56 10.33 0.00 3.27
2142 2236 6.872020 CCGGAAATCAACTAGTTAACTGAGAA 59.128 38.462 18.56 0.00 0.00 2.87
2143 2237 7.549488 CCGGAAATCAACTAGTTAACTGAGAAT 59.451 37.037 18.56 2.90 0.00 2.40
2144 2238 9.582431 CGGAAATCAACTAGTTAACTGAGAATA 57.418 33.333 18.56 0.00 0.00 1.75
2169 2263 6.449830 AAAAGACTACCCAACTGTAATCCT 57.550 37.500 0.00 0.00 0.00 3.24
2170 2264 5.678955 AAGACTACCCAACTGTAATCCTC 57.321 43.478 0.00 0.00 0.00 3.71
2171 2265 4.684724 AGACTACCCAACTGTAATCCTCA 58.315 43.478 0.00 0.00 0.00 3.86
2172 2266 5.281314 AGACTACCCAACTGTAATCCTCAT 58.719 41.667 0.00 0.00 0.00 2.90
2173 2267 5.726793 AGACTACCCAACTGTAATCCTCATT 59.273 40.000 0.00 0.00 0.00 2.57
2174 2268 6.215636 AGACTACCCAACTGTAATCCTCATTT 59.784 38.462 0.00 0.00 0.00 2.32
2175 2269 6.790319 ACTACCCAACTGTAATCCTCATTTT 58.210 36.000 0.00 0.00 0.00 1.82
2176 2270 5.982890 ACCCAACTGTAATCCTCATTTTG 57.017 39.130 0.00 0.00 0.00 2.44
2177 2271 5.393866 ACCCAACTGTAATCCTCATTTTGT 58.606 37.500 0.00 0.00 0.00 2.83
2178 2272 5.476945 ACCCAACTGTAATCCTCATTTTGTC 59.523 40.000 0.00 0.00 0.00 3.18
2179 2273 5.105756 CCCAACTGTAATCCTCATTTTGTCC 60.106 44.000 0.00 0.00 0.00 4.02
2180 2274 5.391950 CCAACTGTAATCCTCATTTTGTCCG 60.392 44.000 0.00 0.00 0.00 4.79
2181 2275 4.261801 ACTGTAATCCTCATTTTGTCCGG 58.738 43.478 0.00 0.00 0.00 5.14
2182 2276 4.019681 ACTGTAATCCTCATTTTGTCCGGA 60.020 41.667 0.00 0.00 0.00 5.14
2183 2277 4.912586 TGTAATCCTCATTTTGTCCGGAA 58.087 39.130 5.23 0.00 0.00 4.30
2184 2278 5.317808 TGTAATCCTCATTTTGTCCGGAAA 58.682 37.500 5.23 0.00 0.00 3.13
2185 2279 5.414454 TGTAATCCTCATTTTGTCCGGAAAG 59.586 40.000 5.23 0.00 0.00 2.62
2186 2280 2.159382 TCCTCATTTTGTCCGGAAAGC 58.841 47.619 5.23 0.00 0.00 3.51
2187 2281 1.885887 CCTCATTTTGTCCGGAAAGCA 59.114 47.619 5.23 0.00 0.00 3.91
2188 2282 2.295909 CCTCATTTTGTCCGGAAAGCAA 59.704 45.455 5.23 3.25 0.00 3.91
2189 2283 3.308530 CTCATTTTGTCCGGAAAGCAAC 58.691 45.455 5.23 0.00 0.00 4.17
2190 2284 2.955660 TCATTTTGTCCGGAAAGCAACT 59.044 40.909 5.23 0.00 0.00 3.16
2191 2285 4.138290 TCATTTTGTCCGGAAAGCAACTA 58.862 39.130 5.23 0.00 0.00 2.24
2192 2286 4.215399 TCATTTTGTCCGGAAAGCAACTAG 59.785 41.667 5.23 0.00 0.00 2.57
2193 2287 2.922740 TTGTCCGGAAAGCAACTAGT 57.077 45.000 5.23 0.00 0.00 2.57
2194 2288 2.922740 TGTCCGGAAAGCAACTAGTT 57.077 45.000 5.23 1.12 0.00 2.24
2195 2289 4.339872 TTGTCCGGAAAGCAACTAGTTA 57.660 40.909 5.23 0.00 0.00 2.24
2196 2290 4.339872 TGTCCGGAAAGCAACTAGTTAA 57.660 40.909 5.23 0.00 0.00 2.01
2197 2291 4.060205 TGTCCGGAAAGCAACTAGTTAAC 58.940 43.478 5.23 3.72 0.00 2.01
2198 2292 3.122445 GTCCGGAAAGCAACTAGTTAACG 59.878 47.826 5.23 6.77 0.00 3.18
2199 2293 3.005684 TCCGGAAAGCAACTAGTTAACGA 59.994 43.478 8.04 0.00 0.00 3.85
2200 2294 3.367025 CCGGAAAGCAACTAGTTAACGAG 59.633 47.826 13.50 13.50 0.00 4.18
2201 2295 3.181533 CGGAAAGCAACTAGTTAACGAGC 60.182 47.826 14.82 7.28 0.00 5.03
2202 2296 3.744426 GGAAAGCAACTAGTTAACGAGCA 59.256 43.478 14.82 0.00 0.00 4.26
2203 2297 4.377124 GGAAAGCAACTAGTTAACGAGCAC 60.377 45.833 14.82 5.58 0.00 4.40
2204 2298 3.662247 AGCAACTAGTTAACGAGCACT 57.338 42.857 14.82 7.58 0.00 4.40
2205 2299 3.576648 AGCAACTAGTTAACGAGCACTC 58.423 45.455 14.82 3.42 0.00 3.51
2206 2300 2.666994 GCAACTAGTTAACGAGCACTCC 59.333 50.000 14.82 0.00 0.00 3.85
2207 2301 3.614390 GCAACTAGTTAACGAGCACTCCT 60.614 47.826 14.82 0.00 0.00 3.69
2208 2302 4.557205 CAACTAGTTAACGAGCACTCCTT 58.443 43.478 14.82 0.00 0.00 3.36
2209 2303 4.175787 ACTAGTTAACGAGCACTCCTTG 57.824 45.455 14.82 0.00 0.00 3.61
2210 2304 3.825014 ACTAGTTAACGAGCACTCCTTGA 59.175 43.478 14.82 0.00 0.00 3.02
2211 2305 3.305398 AGTTAACGAGCACTCCTTGAG 57.695 47.619 0.00 0.00 35.52 3.02
2212 2306 2.028930 AGTTAACGAGCACTCCTTGAGG 60.029 50.000 0.00 0.00 33.35 3.86
2213 2307 1.919240 TAACGAGCACTCCTTGAGGA 58.081 50.000 0.00 0.00 43.08 3.71
2225 2319 4.191243 TGAGGAGCCTCACAACGA 57.809 55.556 15.01 0.00 46.80 3.85
2226 2320 2.671145 TGAGGAGCCTCACAACGAT 58.329 52.632 15.01 0.00 46.80 3.73
2227 2321 0.532573 TGAGGAGCCTCACAACGATC 59.467 55.000 15.01 0.00 46.80 3.69
2228 2322 0.532573 GAGGAGCCTCACAACGATCA 59.467 55.000 11.58 0.00 42.31 2.92
2229 2323 0.534412 AGGAGCCTCACAACGATCAG 59.466 55.000 0.00 0.00 0.00 2.90
2230 2324 1.086634 GGAGCCTCACAACGATCAGC 61.087 60.000 0.00 0.00 0.00 4.26
2232 2326 3.084579 CCTCACAACGATCAGCGC 58.915 61.111 0.00 0.00 46.04 5.92
2233 2327 2.456119 CCTCACAACGATCAGCGCC 61.456 63.158 2.29 0.00 46.04 6.53
2234 2328 1.737735 CTCACAACGATCAGCGCCA 60.738 57.895 2.29 0.00 46.04 5.69
2235 2329 1.959899 CTCACAACGATCAGCGCCAC 61.960 60.000 2.29 0.00 46.04 5.01
2236 2330 2.029288 CACAACGATCAGCGCCACT 61.029 57.895 2.29 0.00 46.04 4.00
2237 2331 1.301716 ACAACGATCAGCGCCACTT 60.302 52.632 2.29 0.00 46.04 3.16
2238 2332 1.133253 CAACGATCAGCGCCACTTG 59.867 57.895 2.29 0.00 46.04 3.16
2239 2333 1.005037 AACGATCAGCGCCACTTGA 60.005 52.632 2.29 0.40 46.04 3.02
2240 2334 1.291877 AACGATCAGCGCCACTTGAC 61.292 55.000 2.29 0.00 46.04 3.18
2241 2335 2.792290 CGATCAGCGCCACTTGACG 61.792 63.158 2.29 4.51 0.00 4.35
2248 2342 2.126071 GCCACTTGACGCGCTCTA 60.126 61.111 5.73 0.00 0.00 2.43
2249 2343 1.736645 GCCACTTGACGCGCTCTAA 60.737 57.895 5.73 0.00 0.00 2.10
2250 2344 1.687494 GCCACTTGACGCGCTCTAAG 61.687 60.000 5.73 8.36 0.00 2.18
2251 2345 1.687494 CCACTTGACGCGCTCTAAGC 61.687 60.000 5.73 0.00 38.02 3.09
2252 2346 1.446272 ACTTGACGCGCTCTAAGCC 60.446 57.895 5.73 0.00 38.18 4.35
2253 2347 1.446099 CTTGACGCGCTCTAAGCCA 60.446 57.895 5.73 0.00 38.18 4.75
2254 2348 0.807667 CTTGACGCGCTCTAAGCCAT 60.808 55.000 5.73 0.00 38.18 4.40
2255 2349 0.391130 TTGACGCGCTCTAAGCCATT 60.391 50.000 5.73 0.00 38.18 3.16
2256 2350 0.806102 TGACGCGCTCTAAGCCATTC 60.806 55.000 5.73 0.00 38.18 2.67
2257 2351 1.812214 GACGCGCTCTAAGCCATTCG 61.812 60.000 5.73 0.00 38.18 3.34
2258 2352 2.628657 GCGCTCTAAGCCATTCGC 59.371 61.111 0.00 0.00 38.18 4.70
2259 2353 2.886782 GCGCTCTAAGCCATTCGCC 61.887 63.158 0.00 0.00 38.18 5.54
2260 2354 1.521457 CGCTCTAAGCCATTCGCCA 60.521 57.895 0.00 0.00 38.18 5.69
2261 2355 1.766143 CGCTCTAAGCCATTCGCCAC 61.766 60.000 0.00 0.00 38.18 5.01
2262 2356 1.766143 GCTCTAAGCCATTCGCCACG 61.766 60.000 0.00 0.00 38.78 4.94
2263 2357 0.460284 CTCTAAGCCATTCGCCACGT 60.460 55.000 0.00 0.00 38.78 4.49
2264 2358 0.739462 TCTAAGCCATTCGCCACGTG 60.739 55.000 9.08 9.08 38.78 4.49
2265 2359 1.004320 TAAGCCATTCGCCACGTGT 60.004 52.632 15.65 0.00 38.78 4.49
2266 2360 1.017177 TAAGCCATTCGCCACGTGTC 61.017 55.000 15.65 0.00 38.78 3.67
2267 2361 3.047280 GCCATTCGCCACGTGTCA 61.047 61.111 15.65 0.00 0.00 3.58
2268 2362 2.860293 CCATTCGCCACGTGTCAC 59.140 61.111 15.65 2.48 0.00 3.67
2278 2372 2.256764 CGTGTCACGCTCTGAGCT 59.743 61.111 25.59 11.31 39.60 4.09
2279 2373 1.799519 CGTGTCACGCTCTGAGCTC 60.800 63.158 25.59 6.82 39.60 4.09
2280 2374 1.583986 GTGTCACGCTCTGAGCTCT 59.416 57.895 25.59 9.26 39.60 4.09
2281 2375 0.038709 GTGTCACGCTCTGAGCTCTT 60.039 55.000 25.59 8.58 39.60 2.85
2282 2376 0.242286 TGTCACGCTCTGAGCTCTTC 59.758 55.000 25.59 14.31 39.60 2.87
2283 2377 0.457681 GTCACGCTCTGAGCTCTTCC 60.458 60.000 25.59 7.60 39.60 3.46
2284 2378 0.610509 TCACGCTCTGAGCTCTTCCT 60.611 55.000 25.59 0.31 39.60 3.36
2285 2379 0.179140 CACGCTCTGAGCTCTTCCTC 60.179 60.000 25.59 0.00 39.60 3.71
2286 2380 1.319614 ACGCTCTGAGCTCTTCCTCC 61.320 60.000 25.59 0.00 39.60 4.30
2287 2381 1.437160 GCTCTGAGCTCTTCCTCCG 59.563 63.158 21.93 0.00 38.45 4.63
2288 2382 1.034838 GCTCTGAGCTCTTCCTCCGA 61.035 60.000 21.93 0.00 38.45 4.55
2289 2383 1.468985 CTCTGAGCTCTTCCTCCGAA 58.531 55.000 16.19 0.00 0.00 4.30
2290 2384 2.031120 CTCTGAGCTCTTCCTCCGAAT 58.969 52.381 16.19 0.00 0.00 3.34
2291 2385 2.430332 CTCTGAGCTCTTCCTCCGAATT 59.570 50.000 16.19 0.00 0.00 2.17
2292 2386 2.834549 TCTGAGCTCTTCCTCCGAATTT 59.165 45.455 16.19 0.00 0.00 1.82
2293 2387 3.261897 TCTGAGCTCTTCCTCCGAATTTT 59.738 43.478 16.19 0.00 0.00 1.82
2294 2388 3.338249 TGAGCTCTTCCTCCGAATTTTG 58.662 45.455 16.19 0.00 0.00 2.44
2295 2389 3.244561 TGAGCTCTTCCTCCGAATTTTGT 60.245 43.478 16.19 0.00 0.00 2.83
2296 2390 3.753797 GAGCTCTTCCTCCGAATTTTGTT 59.246 43.478 6.43 0.00 0.00 2.83
2297 2391 4.145052 AGCTCTTCCTCCGAATTTTGTTT 58.855 39.130 0.00 0.00 0.00 2.83
2298 2392 4.584743 AGCTCTTCCTCCGAATTTTGTTTT 59.415 37.500 0.00 0.00 0.00 2.43
2299 2393 5.069119 AGCTCTTCCTCCGAATTTTGTTTTT 59.931 36.000 0.00 0.00 0.00 1.94
2323 2417 1.194896 TTTTTCGCACGCGTTTTCGG 61.195 50.000 10.22 0.00 44.29 4.30
2324 2418 4.653252 TTCGCACGCGTTTTCGGC 62.653 61.111 10.22 9.05 44.29 5.54
2326 2420 4.734920 CGCACGCGTTTTCGGCAT 62.735 61.111 10.22 0.00 44.29 4.40
2327 2421 2.428403 GCACGCGTTTTCGGCATT 60.428 55.556 10.22 0.00 44.29 3.56
2328 2422 2.014018 GCACGCGTTTTCGGCATTT 61.014 52.632 10.22 0.00 44.29 2.32
2329 2423 1.544777 GCACGCGTTTTCGGCATTTT 61.545 50.000 10.22 0.00 44.29 1.82
2330 2424 1.676057 CACGCGTTTTCGGCATTTTA 58.324 45.000 10.22 0.00 44.29 1.52
2331 2425 2.044860 CACGCGTTTTCGGCATTTTAA 58.955 42.857 10.22 0.00 44.29 1.52
2332 2426 2.468040 CACGCGTTTTCGGCATTTTAAA 59.532 40.909 10.22 0.00 44.29 1.52
2333 2427 3.120451 CACGCGTTTTCGGCATTTTAAAT 59.880 39.130 10.22 0.00 44.29 1.40
2334 2428 4.321217 CACGCGTTTTCGGCATTTTAAATA 59.679 37.500 10.22 0.00 44.29 1.40
2335 2429 4.321480 ACGCGTTTTCGGCATTTTAAATAC 59.679 37.500 5.58 0.00 44.29 1.89
2336 2430 4.555747 CGCGTTTTCGGCATTTTAAATACT 59.444 37.500 0.00 0.00 44.29 2.12
2337 2431 5.059955 CGCGTTTTCGGCATTTTAAATACTT 59.940 36.000 0.00 0.00 44.29 2.24
2338 2432 6.399144 CGCGTTTTCGGCATTTTAAATACTTT 60.399 34.615 0.00 0.00 44.29 2.66
2339 2433 6.730177 GCGTTTTCGGCATTTTAAATACTTTG 59.270 34.615 0.00 0.00 44.29 2.77
2340 2434 7.567952 GCGTTTTCGGCATTTTAAATACTTTGT 60.568 33.333 0.00 0.00 44.29 2.83
2341 2435 8.270111 CGTTTTCGGCATTTTAAATACTTTGTT 58.730 29.630 0.00 0.00 39.94 2.83
2342 2436 9.923786 GTTTTCGGCATTTTAAATACTTTGTTT 57.076 25.926 0.00 0.00 0.00 2.83
2344 2438 9.922305 TTTCGGCATTTTAAATACTTTGTTTTG 57.078 25.926 0.00 0.00 0.00 2.44
2345 2439 8.077836 TCGGCATTTTAAATACTTTGTTTTGG 57.922 30.769 0.00 0.00 0.00 3.28
2346 2440 7.171678 TCGGCATTTTAAATACTTTGTTTTGGG 59.828 33.333 0.00 0.00 0.00 4.12
2347 2441 7.041712 CGGCATTTTAAATACTTTGTTTTGGGT 60.042 33.333 0.00 0.00 0.00 4.51
2348 2442 8.625651 GGCATTTTAAATACTTTGTTTTGGGTT 58.374 29.630 0.00 0.00 0.00 4.11
2371 2465 5.497798 TTTTCGACGTTTTGGTTTTTCAC 57.502 34.783 0.00 0.00 0.00 3.18
2381 2475 1.977056 GGTTTTTCACCGGTCTTCCT 58.023 50.000 2.59 0.00 35.12 3.36
2382 2476 2.304092 GGTTTTTCACCGGTCTTCCTT 58.696 47.619 2.59 0.00 35.12 3.36
2383 2477 3.479489 GGTTTTTCACCGGTCTTCCTTA 58.521 45.455 2.59 0.00 35.12 2.69
2384 2478 3.501062 GGTTTTTCACCGGTCTTCCTTAG 59.499 47.826 2.59 0.00 35.12 2.18
2385 2479 2.467566 TTTCACCGGTCTTCCTTAGC 57.532 50.000 2.59 0.00 0.00 3.09
2386 2480 1.640917 TTCACCGGTCTTCCTTAGCT 58.359 50.000 2.59 0.00 0.00 3.32
2387 2481 1.640917 TCACCGGTCTTCCTTAGCTT 58.359 50.000 2.59 0.00 0.00 3.74
2388 2482 1.975680 TCACCGGTCTTCCTTAGCTTT 59.024 47.619 2.59 0.00 0.00 3.51
2389 2483 2.370849 TCACCGGTCTTCCTTAGCTTTT 59.629 45.455 2.59 0.00 0.00 2.27
2390 2484 2.742589 CACCGGTCTTCCTTAGCTTTTC 59.257 50.000 2.59 0.00 0.00 2.29
2391 2485 2.000447 CCGGTCTTCCTTAGCTTTTCG 59.000 52.381 0.00 0.00 0.00 3.46
2392 2486 2.353406 CCGGTCTTCCTTAGCTTTTCGA 60.353 50.000 0.00 0.00 0.00 3.71
2393 2487 2.666994 CGGTCTTCCTTAGCTTTTCGAC 59.333 50.000 0.00 0.00 0.00 4.20
2394 2488 3.001414 GGTCTTCCTTAGCTTTTCGACC 58.999 50.000 0.00 0.00 33.73 4.79
2395 2489 3.001414 GTCTTCCTTAGCTTTTCGACCC 58.999 50.000 0.00 0.00 0.00 4.46
2396 2490 2.635915 TCTTCCTTAGCTTTTCGACCCA 59.364 45.455 0.00 0.00 0.00 4.51
2397 2491 3.071892 TCTTCCTTAGCTTTTCGACCCAA 59.928 43.478 0.00 0.00 0.00 4.12
2398 2492 3.713826 TCCTTAGCTTTTCGACCCAAT 57.286 42.857 0.00 0.00 0.00 3.16
2399 2493 4.028993 TCCTTAGCTTTTCGACCCAATT 57.971 40.909 0.00 0.00 0.00 2.32
2400 2494 4.403734 TCCTTAGCTTTTCGACCCAATTT 58.596 39.130 0.00 0.00 0.00 1.82
2401 2495 4.830600 TCCTTAGCTTTTCGACCCAATTTT 59.169 37.500 0.00 0.00 0.00 1.82
2402 2496 5.303333 TCCTTAGCTTTTCGACCCAATTTTT 59.697 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.936547 GATCAAAGTCTCCATGGCGAC 59.063 52.381 24.53 24.53 0.00 5.19
35 36 2.401195 GCAGCGGCGATCAAAGTC 59.599 61.111 12.98 0.00 0.00 3.01
87 88 3.810896 GGCGTTTCATGCGGGGAC 61.811 66.667 0.00 0.00 0.00 4.46
89 90 3.814268 CAGGCGTTTCATGCGGGG 61.814 66.667 0.00 0.00 0.00 5.73
110 111 2.808206 CGGTATCCCCTGTGAGGCC 61.808 68.421 0.00 0.00 32.73 5.19
111 112 2.822399 CGGTATCCCCTGTGAGGC 59.178 66.667 0.00 0.00 32.73 4.70
133 134 0.850883 AGGATCCATGGTGGGTGGTT 60.851 55.000 15.82 0.00 38.32 3.67
138 139 0.038744 GCCATAGGATCCATGGTGGG 59.961 60.000 28.94 17.46 44.15 4.61
201 202 2.190578 CCTCGTTCCATCCCCAGC 59.809 66.667 0.00 0.00 0.00 4.85
205 206 1.687297 GACTCCCCTCGTTCCATCCC 61.687 65.000 0.00 0.00 0.00 3.85
211 212 1.726533 CCGCTAGACTCCCCTCGTTC 61.727 65.000 0.00 0.00 0.00 3.95
217 218 1.904378 CCTAGCCGCTAGACTCCCC 60.904 68.421 26.13 0.00 36.26 4.81
251 252 4.821589 CTCCCCTCGAGCAACGCC 62.822 72.222 6.99 0.00 42.26 5.68
256 257 4.841617 ATCGCCTCCCCTCGAGCA 62.842 66.667 6.99 0.00 38.17 4.26
293 294 4.999950 GCAATACATGAGGGAAGGTATCAG 59.000 45.833 0.00 0.00 0.00 2.90
296 297 3.983410 AGGCAATACATGAGGGAAGGTAT 59.017 43.478 0.00 0.00 0.00 2.73
323 324 1.609061 CGACAAGGAGGTGCACAGATT 60.609 52.381 20.43 4.58 0.00 2.40
326 327 2.320587 GCGACAAGGAGGTGCACAG 61.321 63.158 20.43 3.26 0.00 3.66
344 345 3.842428 CGCACGAGAAAATCAAACATCAG 59.158 43.478 0.00 0.00 0.00 2.90
376 377 8.819974 AGTCAACTACAAGCATTTGAAATTTTG 58.180 29.630 9.22 9.22 37.73 2.44
387 388 5.012148 ACCACTTAGAGTCAACTACAAGCAT 59.988 40.000 0.00 0.00 0.00 3.79
417 418 9.990360 TCATGAGTAACACAAAGTATAACTCAA 57.010 29.630 6.38 0.00 42.67 3.02
424 425 9.896645 ATCTTCATCATGAGTAACACAAAGTAT 57.103 29.630 0.09 0.00 0.00 2.12
425 426 9.371136 GATCTTCATCATGAGTAACACAAAGTA 57.629 33.333 0.09 0.00 0.00 2.24
426 427 8.099537 AGATCTTCATCATGAGTAACACAAAGT 58.900 33.333 0.09 0.00 0.00 2.66
427 428 8.489990 AGATCTTCATCATGAGTAACACAAAG 57.510 34.615 0.09 0.00 0.00 2.77
428 429 8.853077 AAGATCTTCATCATGAGTAACACAAA 57.147 30.769 0.88 0.00 0.00 2.83
429 430 8.724229 CAAAGATCTTCATCATGAGTAACACAA 58.276 33.333 8.78 0.00 0.00 3.33
430 431 7.879677 ACAAAGATCTTCATCATGAGTAACACA 59.120 33.333 8.78 0.00 0.00 3.72
431 432 8.261492 ACAAAGATCTTCATCATGAGTAACAC 57.739 34.615 8.78 0.00 0.00 3.32
432 433 9.371136 GTACAAAGATCTTCATCATGAGTAACA 57.629 33.333 8.78 0.00 0.00 2.41
433 434 9.593134 AGTACAAAGATCTTCATCATGAGTAAC 57.407 33.333 8.78 2.93 0.00 2.50
434 435 9.591792 CAGTACAAAGATCTTCATCATGAGTAA 57.408 33.333 8.78 0.00 0.00 2.24
435 436 7.708322 GCAGTACAAAGATCTTCATCATGAGTA 59.292 37.037 8.78 0.25 0.00 2.59
436 437 6.538021 GCAGTACAAAGATCTTCATCATGAGT 59.462 38.462 8.78 1.12 0.00 3.41
437 438 6.762187 AGCAGTACAAAGATCTTCATCATGAG 59.238 38.462 8.78 0.00 0.00 2.90
438 439 6.647229 AGCAGTACAAAGATCTTCATCATGA 58.353 36.000 8.78 0.00 0.00 3.07
439 440 6.922247 AGCAGTACAAAGATCTTCATCATG 57.078 37.500 8.78 5.48 0.00 3.07
440 441 9.624373 AAATAGCAGTACAAAGATCTTCATCAT 57.376 29.630 8.78 0.00 0.00 2.45
445 446 9.657121 GCAATAAATAGCAGTACAAAGATCTTC 57.343 33.333 8.78 0.00 0.00 2.87
446 447 9.177608 TGCAATAAATAGCAGTACAAAGATCTT 57.822 29.630 0.88 0.88 35.51 2.40
447 448 8.737168 TGCAATAAATAGCAGTACAAAGATCT 57.263 30.769 0.00 0.00 35.51 2.75
612 617 2.226437 GCGGAGAGATCAGACAGAGATC 59.774 54.545 0.00 0.00 41.68 2.75
615 620 0.667993 GGCGGAGAGATCAGACAGAG 59.332 60.000 0.00 0.00 0.00 3.35
620 625 2.130426 GGCAGGCGGAGAGATCAGA 61.130 63.158 0.00 0.00 0.00 3.27
621 626 2.420890 GGCAGGCGGAGAGATCAG 59.579 66.667 0.00 0.00 0.00 2.90
622 627 3.531207 CGGCAGGCGGAGAGATCA 61.531 66.667 8.89 0.00 0.00 2.92
623 628 4.959596 GCGGCAGGCGGAGAGATC 62.960 72.222 19.28 0.00 0.00 2.75
661 666 1.960471 GCTGGTAGTCCTCTAGTGCCA 60.960 57.143 0.00 0.00 40.64 4.92
664 680 1.751924 GTGGCTGGTAGTCCTCTAGTG 59.248 57.143 0.00 0.00 34.23 2.74
665 681 1.342175 GGTGGCTGGTAGTCCTCTAGT 60.342 57.143 0.00 0.00 34.23 2.57
666 682 1.342076 TGGTGGCTGGTAGTCCTCTAG 60.342 57.143 0.00 0.00 34.23 2.43
667 683 0.708209 TGGTGGCTGGTAGTCCTCTA 59.292 55.000 0.00 0.00 34.23 2.43
668 684 0.905337 GTGGTGGCTGGTAGTCCTCT 60.905 60.000 0.00 0.00 34.23 3.69
669 685 1.597461 GTGGTGGCTGGTAGTCCTC 59.403 63.158 0.00 0.00 34.23 3.71
670 686 2.283529 CGTGGTGGCTGGTAGTCCT 61.284 63.158 0.00 0.00 34.23 3.85
671 687 2.108278 AACGTGGTGGCTGGTAGTCC 62.108 60.000 0.00 0.00 0.00 3.85
672 688 0.949105 CAACGTGGTGGCTGGTAGTC 60.949 60.000 0.00 0.00 0.00 2.59
673 689 1.070786 CAACGTGGTGGCTGGTAGT 59.929 57.895 0.00 0.00 0.00 2.73
674 690 0.250124 TTCAACGTGGTGGCTGGTAG 60.250 55.000 0.00 0.00 0.00 3.18
764 780 0.608640 TTTCTTCCTGGCCGTCTCTC 59.391 55.000 0.00 0.00 0.00 3.20
822 841 2.534264 GAATCGCAGCGTGTCGTGTG 62.534 60.000 15.93 0.00 0.00 3.82
850 874 3.775316 GAGGAAGGAGACTGATGGGTTTA 59.225 47.826 0.00 0.00 42.68 2.01
883 935 1.830587 TTGATCGGGTGCTGTCTGCT 61.831 55.000 3.20 0.00 43.37 4.24
884 936 1.364626 CTTGATCGGGTGCTGTCTGC 61.365 60.000 0.00 0.00 43.25 4.26
885 937 1.364626 GCTTGATCGGGTGCTGTCTG 61.365 60.000 0.00 0.00 0.00 3.51
886 938 1.078848 GCTTGATCGGGTGCTGTCT 60.079 57.895 0.00 0.00 0.00 3.41
887 939 1.364626 CTGCTTGATCGGGTGCTGTC 61.365 60.000 0.00 0.00 0.00 3.51
888 940 1.376424 CTGCTTGATCGGGTGCTGT 60.376 57.895 0.00 0.00 0.00 4.40
891 943 2.467826 GCTCTGCTTGATCGGGTGC 61.468 63.158 0.00 0.00 0.00 5.01
929 981 1.219393 AGCCTAACGAGCTTGGAGC 59.781 57.895 5.79 2.42 42.84 4.70
1386 1463 2.209064 GACGGCTACAGGAGAACGCA 62.209 60.000 0.00 0.00 32.26 5.24
1462 1556 2.819019 CAGCCACACATTTACATGGACA 59.181 45.455 0.00 0.00 34.27 4.02
1513 1607 7.225145 TCAAATCAAGGACAGCAAAATTTTCTG 59.775 33.333 19.86 19.86 0.00 3.02
1521 1615 3.295093 TGGTCAAATCAAGGACAGCAAA 58.705 40.909 0.00 0.00 35.74 3.68
1546 1640 2.101783 TCAAGCCAATTCGCCATGATT 58.898 42.857 0.00 0.00 0.00 2.57
1575 1669 6.693315 ACCGTGGATTGGTCATAAATAAAG 57.307 37.500 0.00 0.00 33.35 1.85
1640 1734 9.554395 TGTGAGAGTTTAGATGTGACATTTTTA 57.446 29.630 0.00 0.00 0.00 1.52
1641 1735 8.450578 TGTGAGAGTTTAGATGTGACATTTTT 57.549 30.769 0.00 0.00 0.00 1.94
1642 1736 8.450578 TTGTGAGAGTTTAGATGTGACATTTT 57.549 30.769 0.00 0.00 0.00 1.82
1643 1737 8.450578 TTTGTGAGAGTTTAGATGTGACATTT 57.549 30.769 0.00 0.00 0.00 2.32
1644 1738 8.627208 ATTTGTGAGAGTTTAGATGTGACATT 57.373 30.769 0.00 0.00 0.00 2.71
1645 1739 9.896645 ATATTTGTGAGAGTTTAGATGTGACAT 57.103 29.630 0.00 0.00 0.00 3.06
1706 1800 9.480053 CTAATGTCCATTCTGTTTGTGATTTTT 57.520 29.630 0.00 0.00 32.50 1.94
1707 1801 8.641541 ACTAATGTCCATTCTGTTTGTGATTTT 58.358 29.630 0.00 0.00 32.50 1.82
1708 1802 8.181904 ACTAATGTCCATTCTGTTTGTGATTT 57.818 30.769 0.00 0.00 32.50 2.17
1709 1803 7.765695 ACTAATGTCCATTCTGTTTGTGATT 57.234 32.000 0.00 0.00 32.50 2.57
1710 1804 7.765695 AACTAATGTCCATTCTGTTTGTGAT 57.234 32.000 0.00 0.00 32.50 3.06
1711 1805 7.581213 AAACTAATGTCCATTCTGTTTGTGA 57.419 32.000 16.30 0.00 36.82 3.58
1712 1806 8.783093 TCTAAACTAATGTCCATTCTGTTTGTG 58.217 33.333 21.28 16.74 37.72 3.33
1713 1807 8.918202 TCTAAACTAATGTCCATTCTGTTTGT 57.082 30.769 21.28 9.26 37.72 2.83
1714 1808 9.778993 CATCTAAACTAATGTCCATTCTGTTTG 57.221 33.333 21.28 15.47 37.72 2.93
1715 1809 9.520515 ACATCTAAACTAATGTCCATTCTGTTT 57.479 29.630 18.82 18.82 39.07 2.83
1716 1810 8.950210 CACATCTAAACTAATGTCCATTCTGTT 58.050 33.333 0.00 1.52 33.92 3.16
1717 1811 8.321353 TCACATCTAAACTAATGTCCATTCTGT 58.679 33.333 0.00 0.00 33.92 3.41
1718 1812 8.607459 GTCACATCTAAACTAATGTCCATTCTG 58.393 37.037 0.00 0.00 33.92 3.02
1719 1813 8.321353 TGTCACATCTAAACTAATGTCCATTCT 58.679 33.333 0.00 0.00 33.92 2.40
1720 1814 8.492673 TGTCACATCTAAACTAATGTCCATTC 57.507 34.615 0.00 0.00 33.92 2.67
1723 1817 9.378551 GTTATGTCACATCTAAACTAATGTCCA 57.621 33.333 0.00 0.00 33.92 4.02
1724 1818 9.601217 AGTTATGTCACATCTAAACTAATGTCC 57.399 33.333 3.03 0.00 33.92 4.02
1757 1851 8.412456 AGAGTCTGTTTATGACACATCTAGATG 58.588 37.037 27.63 27.63 37.21 2.90
1758 1852 8.532186 AGAGTCTGTTTATGACACATCTAGAT 57.468 34.615 0.00 0.00 36.94 1.98
1759 1853 7.946381 AGAGTCTGTTTATGACACATCTAGA 57.054 36.000 0.00 0.00 36.94 2.43
1760 1854 8.994429 AAAGAGTCTGTTTATGACACATCTAG 57.006 34.615 0.00 0.00 36.94 2.43
1761 1855 9.778741 AAAAAGAGTCTGTTTATGACACATCTA 57.221 29.630 6.51 0.00 36.94 1.98
1762 1856 8.682936 AAAAAGAGTCTGTTTATGACACATCT 57.317 30.769 6.51 0.00 36.94 2.90
1815 1909 0.197661 TGGTCTTAACCCTTCCCCCT 59.802 55.000 0.00 0.00 45.83 4.79
1821 1915 3.981212 CCATGGATTGGTCTTAACCCTT 58.019 45.455 5.56 0.00 45.83 3.95
1872 1966 3.436577 TTCTCGACAGAGGGAGTAGTT 57.563 47.619 0.00 0.00 44.47 2.24
1877 1971 4.158764 ACAAGTATTTCTCGACAGAGGGAG 59.841 45.833 0.00 0.00 44.47 4.30
1882 1976 7.683437 TCTAAGACAAGTATTTCTCGACAGA 57.317 36.000 0.00 0.00 0.00 3.41
1883 1977 8.744008 TTTCTAAGACAAGTATTTCTCGACAG 57.256 34.615 0.00 0.00 0.00 3.51
1884 1978 9.140286 CATTTCTAAGACAAGTATTTCTCGACA 57.860 33.333 0.00 0.00 0.00 4.35
1885 1979 9.355215 TCATTTCTAAGACAAGTATTTCTCGAC 57.645 33.333 0.00 0.00 0.00 4.20
1886 1980 9.923143 TTCATTTCTAAGACAAGTATTTCTCGA 57.077 29.630 0.00 0.00 0.00 4.04
1939 2033 9.350951 TCCTCGAAATGATTGTATCTAGACTTA 57.649 33.333 0.00 0.00 0.00 2.24
1940 2034 8.138712 GTCCTCGAAATGATTGTATCTAGACTT 58.861 37.037 0.00 0.00 0.00 3.01
1941 2035 7.285629 TGTCCTCGAAATGATTGTATCTAGACT 59.714 37.037 0.00 0.00 0.00 3.24
1942 2036 7.426410 TGTCCTCGAAATGATTGTATCTAGAC 58.574 38.462 0.00 0.00 0.00 2.59
1943 2037 7.582667 TGTCCTCGAAATGATTGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
1944 2038 7.923344 ACTTGTCCTCGAAATGATTGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
1945 2039 7.782049 ACTTGTCCTCGAAATGATTGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
1946 2040 6.644347 ACTTGTCCTCGAAATGATTGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
1947 2041 6.910536 ACTTGTCCTCGAAATGATTGTATC 57.089 37.500 0.00 0.00 0.00 2.24
1948 2042 8.964476 AATACTTGTCCTCGAAATGATTGTAT 57.036 30.769 0.00 0.00 0.00 2.29
1949 2043 8.786826 AAATACTTGTCCTCGAAATGATTGTA 57.213 30.769 0.00 0.00 0.00 2.41
1950 2044 7.148239 GGAAATACTTGTCCTCGAAATGATTGT 60.148 37.037 0.00 0.00 0.00 2.71
1951 2045 7.189512 GGAAATACTTGTCCTCGAAATGATTG 58.810 38.462 0.00 0.00 0.00 2.67
1952 2046 6.037172 CGGAAATACTTGTCCTCGAAATGATT 59.963 38.462 0.00 0.00 0.00 2.57
1953 2047 5.523916 CGGAAATACTTGTCCTCGAAATGAT 59.476 40.000 0.00 0.00 0.00 2.45
1954 2048 4.868171 CGGAAATACTTGTCCTCGAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
1955 2049 4.034048 CCGGAAATACTTGTCCTCGAAATG 59.966 45.833 0.00 0.00 0.00 2.32
1956 2050 4.081309 TCCGGAAATACTTGTCCTCGAAAT 60.081 41.667 0.00 0.00 0.00 2.17
1957 2051 3.258872 TCCGGAAATACTTGTCCTCGAAA 59.741 43.478 0.00 0.00 0.00 3.46
1958 2052 2.827322 TCCGGAAATACTTGTCCTCGAA 59.173 45.455 0.00 0.00 0.00 3.71
1959 2053 2.165030 GTCCGGAAATACTTGTCCTCGA 59.835 50.000 5.23 0.00 0.00 4.04
1960 2054 2.537401 GTCCGGAAATACTTGTCCTCG 58.463 52.381 5.23 0.00 0.00 4.63
1961 2055 2.537401 CGTCCGGAAATACTTGTCCTC 58.463 52.381 5.23 0.00 0.00 3.71
1962 2056 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
1963 2057 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
1964 2058 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1965 2059 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1966 2060 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1967 2061 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1968 2062 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1969 2063 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1970 2064 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1971 2065 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1972 2066 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
1973 2067 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
1974 2068 0.466922 GAATACTCCCTCCGTCCGGA 60.467 60.000 0.00 0.00 42.90 5.14
1975 2069 0.467659 AGAATACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
1976 2070 0.953003 GAGAATACTCCCTCCGTCCG 59.047 60.000 0.00 0.00 37.19 4.79
1986 2080 1.207329 ACGGCCAAGTGGAGAATACTC 59.793 52.381 2.24 0.00 41.94 2.59
1987 2081 1.066143 CACGGCCAAGTGGAGAATACT 60.066 52.381 2.24 0.00 38.40 2.12
1988 2082 1.338769 ACACGGCCAAGTGGAGAATAC 60.339 52.381 14.36 0.00 45.80 1.89
1989 2083 0.981183 ACACGGCCAAGTGGAGAATA 59.019 50.000 14.36 0.00 45.80 1.75
1990 2084 0.606401 CACACGGCCAAGTGGAGAAT 60.606 55.000 15.05 0.00 45.80 2.40
1991 2085 1.227823 CACACGGCCAAGTGGAGAA 60.228 57.895 15.05 0.00 45.80 2.87
1992 2086 2.425592 CACACGGCCAAGTGGAGA 59.574 61.111 15.05 0.00 45.80 3.71
2003 2097 2.436646 GTCCATCTGCCCACACGG 60.437 66.667 0.00 0.00 0.00 4.94
2004 2098 2.034879 GTGTCCATCTGCCCACACG 61.035 63.158 0.00 0.00 30.49 4.49
2005 2099 2.034879 CGTGTCCATCTGCCCACAC 61.035 63.158 0.00 0.00 36.57 3.82
2006 2100 2.171209 CTCGTGTCCATCTGCCCACA 62.171 60.000 0.00 0.00 0.00 4.17
2007 2101 1.448540 CTCGTGTCCATCTGCCCAC 60.449 63.158 0.00 0.00 0.00 4.61
2008 2102 2.981302 CTCGTGTCCATCTGCCCA 59.019 61.111 0.00 0.00 0.00 5.36
2009 2103 2.512515 GCTCGTGTCCATCTGCCC 60.513 66.667 0.00 0.00 0.00 5.36
2010 2104 1.153289 ATGCTCGTGTCCATCTGCC 60.153 57.895 0.00 0.00 0.00 4.85
2011 2105 0.179089 AGATGCTCGTGTCCATCTGC 60.179 55.000 6.76 0.00 44.68 4.26
2012 2106 2.360483 AGTAGATGCTCGTGTCCATCTG 59.640 50.000 14.18 0.00 45.59 2.90
2014 2108 3.315470 TGTAGTAGATGCTCGTGTCCATC 59.685 47.826 0.00 0.00 38.45 3.51
2015 2109 3.288092 TGTAGTAGATGCTCGTGTCCAT 58.712 45.455 0.00 0.00 0.00 3.41
2016 2110 2.718563 TGTAGTAGATGCTCGTGTCCA 58.281 47.619 0.00 0.00 0.00 4.02
2017 2111 3.436496 GTTGTAGTAGATGCTCGTGTCC 58.564 50.000 0.00 0.00 0.00 4.02
2018 2112 3.436496 GGTTGTAGTAGATGCTCGTGTC 58.564 50.000 0.00 0.00 0.00 3.67
2019 2113 2.165845 GGGTTGTAGTAGATGCTCGTGT 59.834 50.000 0.00 0.00 0.00 4.49
2020 2114 2.481449 GGGGTTGTAGTAGATGCTCGTG 60.481 54.545 0.00 0.00 0.00 4.35
2021 2115 1.755380 GGGGTTGTAGTAGATGCTCGT 59.245 52.381 0.00 0.00 0.00 4.18
2022 2116 1.754803 TGGGGTTGTAGTAGATGCTCG 59.245 52.381 0.00 0.00 0.00 5.03
2023 2117 3.733337 CATGGGGTTGTAGTAGATGCTC 58.267 50.000 0.00 0.00 0.00 4.26
2024 2118 2.158755 GCATGGGGTTGTAGTAGATGCT 60.159 50.000 0.00 0.00 33.51 3.79
2025 2119 2.222027 GCATGGGGTTGTAGTAGATGC 58.778 52.381 0.00 0.00 0.00 3.91
2026 2120 2.439507 AGGCATGGGGTTGTAGTAGATG 59.560 50.000 0.00 0.00 0.00 2.90
2027 2121 2.706190 GAGGCATGGGGTTGTAGTAGAT 59.294 50.000 0.00 0.00 0.00 1.98
2028 2122 2.116238 GAGGCATGGGGTTGTAGTAGA 58.884 52.381 0.00 0.00 0.00 2.59
2029 2123 1.837439 TGAGGCATGGGGTTGTAGTAG 59.163 52.381 0.00 0.00 0.00 2.57
2030 2124 1.959710 TGAGGCATGGGGTTGTAGTA 58.040 50.000 0.00 0.00 0.00 1.82
2031 2125 1.072266 TTGAGGCATGGGGTTGTAGT 58.928 50.000 0.00 0.00 0.00 2.73
2032 2126 1.818674 GTTTGAGGCATGGGGTTGTAG 59.181 52.381 0.00 0.00 0.00 2.74
2033 2127 1.884497 CGTTTGAGGCATGGGGTTGTA 60.884 52.381 0.00 0.00 0.00 2.41
2034 2128 1.178534 CGTTTGAGGCATGGGGTTGT 61.179 55.000 0.00 0.00 0.00 3.32
2035 2129 1.178534 ACGTTTGAGGCATGGGGTTG 61.179 55.000 0.00 0.00 0.00 3.77
2036 2130 0.893727 GACGTTTGAGGCATGGGGTT 60.894 55.000 0.00 0.00 0.00 4.11
2037 2131 1.303317 GACGTTTGAGGCATGGGGT 60.303 57.895 0.00 0.00 0.00 4.95
2038 2132 2.046285 GGACGTTTGAGGCATGGGG 61.046 63.158 0.00 0.00 0.00 4.96
2039 2133 0.251916 TAGGACGTTTGAGGCATGGG 59.748 55.000 0.00 0.00 0.00 4.00
2040 2134 2.213499 GATAGGACGTTTGAGGCATGG 58.787 52.381 0.00 0.00 0.00 3.66
2041 2135 2.213499 GGATAGGACGTTTGAGGCATG 58.787 52.381 0.00 0.00 0.00 4.06
2042 2136 1.202533 CGGATAGGACGTTTGAGGCAT 60.203 52.381 0.00 0.00 0.00 4.40
2043 2137 0.174845 CGGATAGGACGTTTGAGGCA 59.825 55.000 0.00 0.00 0.00 4.75
2044 2138 0.458669 TCGGATAGGACGTTTGAGGC 59.541 55.000 0.00 0.00 0.00 4.70
2045 2139 1.475280 TGTCGGATAGGACGTTTGAGG 59.525 52.381 0.00 0.00 39.83 3.86
2046 2140 2.798680 CTGTCGGATAGGACGTTTGAG 58.201 52.381 0.00 0.00 39.83 3.02
2047 2141 1.135199 GCTGTCGGATAGGACGTTTGA 60.135 52.381 3.87 0.00 39.83 2.69
2048 2142 1.278238 GCTGTCGGATAGGACGTTTG 58.722 55.000 3.87 0.00 39.83 2.93
2049 2143 0.175073 GGCTGTCGGATAGGACGTTT 59.825 55.000 3.87 0.00 39.83 3.60
2050 2144 1.673808 GGGCTGTCGGATAGGACGTT 61.674 60.000 3.87 0.00 39.83 3.99
2051 2145 2.125961 GGGCTGTCGGATAGGACGT 61.126 63.158 3.87 0.00 39.83 4.34
2052 2146 2.728817 GGGCTGTCGGATAGGACG 59.271 66.667 3.87 0.00 39.83 4.79
2053 2147 2.728817 CGGGCTGTCGGATAGGAC 59.271 66.667 3.87 0.00 37.45 3.85
2061 2155 3.633094 CTCAGTGACCGGGCTGTCG 62.633 68.421 9.82 4.96 38.11 4.35
2062 2156 1.816863 TTCTCAGTGACCGGGCTGTC 61.817 60.000 9.82 0.00 34.57 3.51
2063 2157 1.194781 ATTCTCAGTGACCGGGCTGT 61.195 55.000 9.82 0.00 34.57 4.40
2064 2158 0.824109 TATTCTCAGTGACCGGGCTG 59.176 55.000 9.82 12.74 0.00 4.85
2065 2159 1.568504 TTATTCTCAGTGACCGGGCT 58.431 50.000 9.82 0.00 0.00 5.19
2066 2160 2.396590 TTTATTCTCAGTGACCGGGC 57.603 50.000 6.32 1.57 0.00 6.13
2084 2178 4.587262 GGATTACAGTTGGGTGGTCTTTTT 59.413 41.667 0.00 0.00 0.00 1.94
2085 2179 4.141018 AGGATTACAGTTGGGTGGTCTTTT 60.141 41.667 0.00 0.00 0.00 2.27
2086 2180 3.397955 AGGATTACAGTTGGGTGGTCTTT 59.602 43.478 0.00 0.00 0.00 2.52
2087 2181 2.986728 AGGATTACAGTTGGGTGGTCTT 59.013 45.455 0.00 0.00 0.00 3.01
2088 2182 2.572104 GAGGATTACAGTTGGGTGGTCT 59.428 50.000 0.00 0.00 0.00 3.85
2089 2183 2.304761 TGAGGATTACAGTTGGGTGGTC 59.695 50.000 0.00 0.00 0.00 4.02
2090 2184 2.344592 TGAGGATTACAGTTGGGTGGT 58.655 47.619 0.00 0.00 0.00 4.16
2091 2185 3.652057 ATGAGGATTACAGTTGGGTGG 57.348 47.619 0.00 0.00 0.00 4.61
2092 2186 5.243730 ACAAAATGAGGATTACAGTTGGGTG 59.756 40.000 0.00 0.00 0.00 4.61
2093 2187 5.393866 ACAAAATGAGGATTACAGTTGGGT 58.606 37.500 0.00 0.00 0.00 4.51
2094 2188 5.105756 GGACAAAATGAGGATTACAGTTGGG 60.106 44.000 0.00 0.00 0.00 4.12
2095 2189 5.391950 CGGACAAAATGAGGATTACAGTTGG 60.392 44.000 0.00 0.00 0.00 3.77
2096 2190 5.391950 CCGGACAAAATGAGGATTACAGTTG 60.392 44.000 0.00 0.00 0.00 3.16
2097 2191 4.700213 CCGGACAAAATGAGGATTACAGTT 59.300 41.667 0.00 0.00 0.00 3.16
2098 2192 4.019681 TCCGGACAAAATGAGGATTACAGT 60.020 41.667 0.00 0.00 0.00 3.55
2099 2193 4.513442 TCCGGACAAAATGAGGATTACAG 58.487 43.478 0.00 0.00 0.00 2.74
2100 2194 4.561500 TCCGGACAAAATGAGGATTACA 57.438 40.909 0.00 0.00 0.00 2.41
2101 2195 5.890424 TTTCCGGACAAAATGAGGATTAC 57.110 39.130 1.83 0.00 0.00 1.89
2102 2196 6.184068 TGATTTCCGGACAAAATGAGGATTA 58.816 36.000 1.83 0.00 0.00 1.75
2103 2197 5.016173 TGATTTCCGGACAAAATGAGGATT 58.984 37.500 1.83 0.00 0.00 3.01
2104 2198 4.599041 TGATTTCCGGACAAAATGAGGAT 58.401 39.130 1.83 0.00 0.00 3.24
2105 2199 4.027674 TGATTTCCGGACAAAATGAGGA 57.972 40.909 1.83 0.00 0.00 3.71
2106 2200 4.218417 AGTTGATTTCCGGACAAAATGAGG 59.782 41.667 1.83 0.00 0.00 3.86
2107 2201 5.376854 AGTTGATTTCCGGACAAAATGAG 57.623 39.130 1.83 0.00 0.00 2.90
2108 2202 6.001460 ACTAGTTGATTTCCGGACAAAATGA 58.999 36.000 1.83 0.00 0.00 2.57
2109 2203 6.254281 ACTAGTTGATTTCCGGACAAAATG 57.746 37.500 1.83 1.77 0.00 2.32
2110 2204 6.894339 AACTAGTTGATTTCCGGACAAAAT 57.106 33.333 1.83 0.29 0.00 1.82
2111 2205 7.499895 AGTTAACTAGTTGATTTCCGGACAAAA 59.500 33.333 18.56 0.00 0.00 2.44
2112 2206 6.993902 AGTTAACTAGTTGATTTCCGGACAAA 59.006 34.615 18.56 0.00 0.00 2.83
2113 2207 6.425721 CAGTTAACTAGTTGATTTCCGGACAA 59.574 38.462 18.56 1.95 0.00 3.18
2114 2208 5.929992 CAGTTAACTAGTTGATTTCCGGACA 59.070 40.000 18.56 0.00 0.00 4.02
2115 2209 6.161381 TCAGTTAACTAGTTGATTTCCGGAC 58.839 40.000 18.56 0.00 0.00 4.79
2116 2210 6.209986 TCTCAGTTAACTAGTTGATTTCCGGA 59.790 38.462 18.56 0.00 0.00 5.14
2117 2211 6.395629 TCTCAGTTAACTAGTTGATTTCCGG 58.604 40.000 18.56 0.00 0.00 5.14
2118 2212 7.884816 TTCTCAGTTAACTAGTTGATTTCCG 57.115 36.000 18.56 1.89 0.00 4.30
2145 2239 6.849151 AGGATTACAGTTGGGTAGTCTTTTT 58.151 36.000 0.00 0.00 32.43 1.94
2146 2240 6.043938 TGAGGATTACAGTTGGGTAGTCTTTT 59.956 38.462 0.00 0.00 32.43 2.27
2147 2241 5.546499 TGAGGATTACAGTTGGGTAGTCTTT 59.454 40.000 0.00 0.00 32.43 2.52
2148 2242 5.091552 TGAGGATTACAGTTGGGTAGTCTT 58.908 41.667 0.00 0.00 32.43 3.01
2149 2243 4.684724 TGAGGATTACAGTTGGGTAGTCT 58.315 43.478 0.00 0.00 32.43 3.24
2150 2244 5.615925 ATGAGGATTACAGTTGGGTAGTC 57.384 43.478 0.00 0.00 31.39 2.59
2151 2245 6.388619 AAATGAGGATTACAGTTGGGTAGT 57.611 37.500 0.00 0.00 0.00 2.73
2152 2246 6.659242 ACAAAATGAGGATTACAGTTGGGTAG 59.341 38.462 0.00 0.00 0.00 3.18
2153 2247 6.548321 ACAAAATGAGGATTACAGTTGGGTA 58.452 36.000 0.00 0.00 0.00 3.69
2154 2248 5.393866 ACAAAATGAGGATTACAGTTGGGT 58.606 37.500 0.00 0.00 0.00 4.51
2155 2249 5.105756 GGACAAAATGAGGATTACAGTTGGG 60.106 44.000 0.00 0.00 0.00 4.12
2156 2250 5.391950 CGGACAAAATGAGGATTACAGTTGG 60.392 44.000 0.00 0.00 0.00 3.77
2157 2251 5.391950 CCGGACAAAATGAGGATTACAGTTG 60.392 44.000 0.00 0.00 0.00 3.16
2158 2252 4.700213 CCGGACAAAATGAGGATTACAGTT 59.300 41.667 0.00 0.00 0.00 3.16
2159 2253 4.019681 TCCGGACAAAATGAGGATTACAGT 60.020 41.667 0.00 0.00 0.00 3.55
2160 2254 4.513442 TCCGGACAAAATGAGGATTACAG 58.487 43.478 0.00 0.00 0.00 2.74
2161 2255 4.561500 TCCGGACAAAATGAGGATTACA 57.438 40.909 0.00 0.00 0.00 2.41
2162 2256 5.676331 GCTTTCCGGACAAAATGAGGATTAC 60.676 44.000 1.83 0.00 0.00 1.89
2163 2257 4.398044 GCTTTCCGGACAAAATGAGGATTA 59.602 41.667 1.83 0.00 0.00 1.75
2164 2258 3.193479 GCTTTCCGGACAAAATGAGGATT 59.807 43.478 1.83 0.00 0.00 3.01
2165 2259 2.755103 GCTTTCCGGACAAAATGAGGAT 59.245 45.455 1.83 0.00 0.00 3.24
2166 2260 2.159382 GCTTTCCGGACAAAATGAGGA 58.841 47.619 1.83 0.00 0.00 3.71
2167 2261 1.885887 TGCTTTCCGGACAAAATGAGG 59.114 47.619 1.83 0.00 0.00 3.86
2168 2262 3.004734 AGTTGCTTTCCGGACAAAATGAG 59.995 43.478 1.83 0.00 0.00 2.90
2169 2263 2.955660 AGTTGCTTTCCGGACAAAATGA 59.044 40.909 1.83 0.00 0.00 2.57
2170 2264 3.369546 AGTTGCTTTCCGGACAAAATG 57.630 42.857 1.83 0.00 0.00 2.32
2171 2265 4.142038 ACTAGTTGCTTTCCGGACAAAAT 58.858 39.130 1.83 0.59 0.00 1.82
2172 2266 3.547746 ACTAGTTGCTTTCCGGACAAAA 58.452 40.909 1.83 0.00 0.00 2.44
2173 2267 3.202829 ACTAGTTGCTTTCCGGACAAA 57.797 42.857 1.83 0.00 0.00 2.83
2174 2268 2.922740 ACTAGTTGCTTTCCGGACAA 57.077 45.000 1.83 1.95 0.00 3.18
2175 2269 2.922740 AACTAGTTGCTTTCCGGACA 57.077 45.000 1.83 0.00 0.00 4.02
2176 2270 3.122445 CGTTAACTAGTTGCTTTCCGGAC 59.878 47.826 18.56 0.00 0.00 4.79
2177 2271 3.005684 TCGTTAACTAGTTGCTTTCCGGA 59.994 43.478 18.56 0.00 0.00 5.14
2178 2272 3.319755 TCGTTAACTAGTTGCTTTCCGG 58.680 45.455 18.56 0.00 0.00 5.14
2179 2273 3.181533 GCTCGTTAACTAGTTGCTTTCCG 60.182 47.826 18.56 10.33 0.00 4.30
2180 2274 3.744426 TGCTCGTTAACTAGTTGCTTTCC 59.256 43.478 18.56 3.67 0.00 3.13
2181 2275 4.448060 AGTGCTCGTTAACTAGTTGCTTTC 59.552 41.667 18.56 7.51 0.00 2.62
2182 2276 4.377897 AGTGCTCGTTAACTAGTTGCTTT 58.622 39.130 18.56 2.78 0.00 3.51
2183 2277 3.988517 GAGTGCTCGTTAACTAGTTGCTT 59.011 43.478 18.56 5.47 0.00 3.91
2184 2278 3.576648 GAGTGCTCGTTAACTAGTTGCT 58.423 45.455 18.56 4.94 0.00 3.91
2185 2279 2.666994 GGAGTGCTCGTTAACTAGTTGC 59.333 50.000 18.56 12.57 0.00 4.17
2186 2280 4.175787 AGGAGTGCTCGTTAACTAGTTG 57.824 45.455 18.56 1.62 0.00 3.16
2187 2281 4.280174 TCAAGGAGTGCTCGTTAACTAGTT 59.720 41.667 13.68 13.68 36.12 2.24
2188 2282 3.825014 TCAAGGAGTGCTCGTTAACTAGT 59.175 43.478 8.74 0.00 36.12 2.57
2189 2283 4.416620 CTCAAGGAGTGCTCGTTAACTAG 58.583 47.826 3.71 3.24 36.12 2.57
2190 2284 3.192844 CCTCAAGGAGTGCTCGTTAACTA 59.807 47.826 3.71 0.00 36.12 2.24
2191 2285 2.028930 CCTCAAGGAGTGCTCGTTAACT 60.029 50.000 3.71 0.00 36.12 2.24
2192 2286 2.029290 TCCTCAAGGAGTGCTCGTTAAC 60.029 50.000 6.79 0.00 39.78 2.01
2193 2287 2.244695 TCCTCAAGGAGTGCTCGTTAA 58.755 47.619 6.79 0.00 39.78 2.01
2194 2288 1.919240 TCCTCAAGGAGTGCTCGTTA 58.081 50.000 6.79 0.00 39.78 3.18
2195 2289 2.746697 TCCTCAAGGAGTGCTCGTT 58.253 52.632 0.00 1.77 39.78 3.85
2196 2290 4.521559 TCCTCAAGGAGTGCTCGT 57.478 55.556 0.00 0.00 39.78 4.18
2209 2303 0.532573 TGATCGTTGTGAGGCTCCTC 59.467 55.000 12.86 8.95 43.01 3.71
2210 2304 0.534412 CTGATCGTTGTGAGGCTCCT 59.466 55.000 12.86 0.00 0.00 3.69
2211 2305 1.086634 GCTGATCGTTGTGAGGCTCC 61.087 60.000 12.86 4.00 0.00 4.70
2212 2306 1.416813 CGCTGATCGTTGTGAGGCTC 61.417 60.000 7.79 7.79 0.00 4.70
2213 2307 1.446792 CGCTGATCGTTGTGAGGCT 60.447 57.895 0.00 0.00 0.00 4.58
2214 2308 3.084579 CGCTGATCGTTGTGAGGC 58.915 61.111 0.00 0.00 0.00 4.70
2215 2309 2.456119 GGCGCTGATCGTTGTGAGG 61.456 63.158 7.64 0.00 41.07 3.86
2216 2310 1.737735 TGGCGCTGATCGTTGTGAG 60.738 57.895 7.64 0.00 41.07 3.51
2217 2311 2.027073 GTGGCGCTGATCGTTGTGA 61.027 57.895 7.64 0.00 41.07 3.58
2218 2312 1.568612 AAGTGGCGCTGATCGTTGTG 61.569 55.000 7.64 0.00 41.07 3.33
2219 2313 1.301716 AAGTGGCGCTGATCGTTGT 60.302 52.632 7.64 0.00 41.07 3.32
2220 2314 1.133253 CAAGTGGCGCTGATCGTTG 59.867 57.895 7.64 0.00 41.07 4.10
2221 2315 1.005037 TCAAGTGGCGCTGATCGTT 60.005 52.632 7.64 0.00 41.07 3.85
2222 2316 1.738099 GTCAAGTGGCGCTGATCGT 60.738 57.895 7.64 0.00 41.07 3.73
2223 2317 2.792290 CGTCAAGTGGCGCTGATCG 61.792 63.158 7.64 6.20 35.94 3.69
2224 2318 3.084579 CGTCAAGTGGCGCTGATC 58.915 61.111 7.64 0.00 35.94 2.92
2231 2325 1.687494 CTTAGAGCGCGTCAAGTGGC 61.687 60.000 8.43 0.00 0.00 5.01
2232 2326 1.687494 GCTTAGAGCGCGTCAAGTGG 61.687 60.000 8.43 0.00 0.00 4.00
2233 2327 1.687494 GGCTTAGAGCGCGTCAAGTG 61.687 60.000 8.43 0.00 43.62 3.16
2234 2328 1.446272 GGCTTAGAGCGCGTCAAGT 60.446 57.895 8.43 0.00 43.62 3.16
2235 2329 0.807667 ATGGCTTAGAGCGCGTCAAG 60.808 55.000 8.43 7.66 43.62 3.02
2236 2330 0.391130 AATGGCTTAGAGCGCGTCAA 60.391 50.000 8.43 0.00 43.62 3.18
2237 2331 0.806102 GAATGGCTTAGAGCGCGTCA 60.806 55.000 8.43 0.00 43.62 4.35
2238 2332 1.812214 CGAATGGCTTAGAGCGCGTC 61.812 60.000 8.43 4.09 43.62 5.19
2239 2333 1.878522 CGAATGGCTTAGAGCGCGT 60.879 57.895 8.43 0.00 43.62 6.01
2240 2334 2.923854 CGAATGGCTTAGAGCGCG 59.076 61.111 0.00 0.00 43.62 6.86
2241 2335 2.628657 GCGAATGGCTTAGAGCGC 59.371 61.111 0.00 0.00 43.62 5.92
2242 2336 1.521457 TGGCGAATGGCTTAGAGCG 60.521 57.895 0.00 0.00 43.62 5.03
2243 2337 1.766143 CGTGGCGAATGGCTTAGAGC 61.766 60.000 0.00 0.00 42.94 4.09
2244 2338 0.460284 ACGTGGCGAATGGCTTAGAG 60.460 55.000 0.00 0.00 42.94 2.43
2245 2339 0.739462 CACGTGGCGAATGGCTTAGA 60.739 55.000 7.95 0.00 42.94 2.10
2246 2340 1.019278 ACACGTGGCGAATGGCTTAG 61.019 55.000 21.57 0.00 42.94 2.18
2247 2341 1.004320 ACACGTGGCGAATGGCTTA 60.004 52.632 21.57 0.00 42.94 3.09
2248 2342 2.281484 ACACGTGGCGAATGGCTT 60.281 55.556 21.57 0.00 42.94 4.35
2249 2343 2.742372 GACACGTGGCGAATGGCT 60.742 61.111 21.57 0.00 42.94 4.75
2250 2344 3.047280 TGACACGTGGCGAATGGC 61.047 61.111 21.57 0.00 42.51 4.40
2251 2345 2.860293 GTGACACGTGGCGAATGG 59.140 61.111 21.57 0.00 0.00 3.16
2252 2346 2.469847 CGTGACACGTGGCGAATG 59.530 61.111 21.57 3.20 36.74 2.67
2253 2347 3.411351 GCGTGACACGTGGCGAAT 61.411 61.111 27.32 4.58 44.73 3.34
2254 2348 4.578898 AGCGTGACACGTGGCGAA 62.579 61.111 27.32 5.52 44.73 4.70
2255 2349 4.994201 GAGCGTGACACGTGGCGA 62.994 66.667 27.32 10.79 44.73 5.54
2257 2351 3.406361 CAGAGCGTGACACGTGGC 61.406 66.667 27.32 19.24 44.73 5.01
2258 2352 1.730902 CTCAGAGCGTGACACGTGG 60.731 63.158 27.32 14.97 44.73 4.94
2259 2353 2.368105 GCTCAGAGCGTGACACGTG 61.368 63.158 27.32 15.48 44.73 4.49
2260 2354 2.049985 GCTCAGAGCGTGACACGT 60.050 61.111 27.32 15.14 44.73 4.49
2269 2363 1.034838 TCGGAGGAAGAGCTCAGAGC 61.035 60.000 17.77 15.25 42.84 4.09
2270 2364 1.468985 TTCGGAGGAAGAGCTCAGAG 58.531 55.000 17.77 0.00 0.00 3.35
2271 2365 2.151502 ATTCGGAGGAAGAGCTCAGA 57.848 50.000 17.77 0.58 35.19 3.27
2272 2366 2.977772 AATTCGGAGGAAGAGCTCAG 57.022 50.000 17.77 0.00 35.19 3.35
2273 2367 3.244561 ACAAAATTCGGAGGAAGAGCTCA 60.245 43.478 17.77 0.00 35.19 4.26
2274 2368 3.339141 ACAAAATTCGGAGGAAGAGCTC 58.661 45.455 5.27 5.27 35.19 4.09
2275 2369 3.425162 ACAAAATTCGGAGGAAGAGCT 57.575 42.857 0.00 0.00 35.19 4.09
2276 2370 4.505313 AAACAAAATTCGGAGGAAGAGC 57.495 40.909 0.00 0.00 35.19 4.09
2304 2398 1.194896 CCGAAAACGCGTGCGAAAAA 61.195 50.000 24.61 0.00 42.83 1.94
2305 2399 1.651730 CCGAAAACGCGTGCGAAAA 60.652 52.632 24.61 0.00 42.83 2.29
2306 2400 2.052941 CCGAAAACGCGTGCGAAA 60.053 55.556 24.61 0.00 42.83 3.46
2307 2401 4.653252 GCCGAAAACGCGTGCGAA 62.653 61.111 24.61 0.00 42.83 4.70
2309 2403 4.734920 ATGCCGAAAACGCGTGCG 62.735 61.111 14.98 17.33 46.03 5.34
2310 2404 1.544777 AAAATGCCGAAAACGCGTGC 61.545 50.000 14.98 12.68 0.00 5.34
2311 2405 1.676057 TAAAATGCCGAAAACGCGTG 58.324 45.000 14.98 0.00 0.00 5.34
2312 2406 2.402640 TTAAAATGCCGAAAACGCGT 57.597 40.000 5.58 5.58 0.00 6.01
2313 2407 3.963340 ATTTAAAATGCCGAAAACGCG 57.037 38.095 3.53 3.53 0.00 6.01
2314 2408 6.384178 AAGTATTTAAAATGCCGAAAACGC 57.616 33.333 0.00 0.00 0.00 4.84
2315 2409 7.779349 ACAAAGTATTTAAAATGCCGAAAACG 58.221 30.769 0.00 0.00 35.03 3.60
2316 2410 9.923786 AAACAAAGTATTTAAAATGCCGAAAAC 57.076 25.926 0.00 0.00 35.03 2.43
2318 2412 9.922305 CAAAACAAAGTATTTAAAATGCCGAAA 57.078 25.926 0.00 0.00 35.03 3.46
2319 2413 8.552034 CCAAAACAAAGTATTTAAAATGCCGAA 58.448 29.630 0.00 0.00 35.03 4.30
2320 2414 7.171678 CCCAAAACAAAGTATTTAAAATGCCGA 59.828 33.333 0.00 0.00 35.03 5.54
2321 2415 7.041712 ACCCAAAACAAAGTATTTAAAATGCCG 60.042 33.333 0.00 0.00 35.03 5.69
2322 2416 8.160521 ACCCAAAACAAAGTATTTAAAATGCC 57.839 30.769 0.00 0.00 35.03 4.40
2348 2442 5.902605 GTGAAAAACCAAAACGTCGAAAAA 58.097 33.333 0.00 0.00 0.00 1.94
2349 2443 5.497798 GTGAAAAACCAAAACGTCGAAAA 57.502 34.783 0.00 0.00 0.00 2.29
2362 2456 1.977056 AGGAAGACCGGTGAAAAACC 58.023 50.000 14.63 6.78 46.60 3.27
2363 2457 3.058432 GCTAAGGAAGACCGGTGAAAAAC 60.058 47.826 14.63 0.00 41.83 2.43
2364 2458 3.143728 GCTAAGGAAGACCGGTGAAAAA 58.856 45.455 14.63 0.00 41.83 1.94
2365 2459 2.370849 AGCTAAGGAAGACCGGTGAAAA 59.629 45.455 14.63 0.00 41.83 2.29
2366 2460 1.975680 AGCTAAGGAAGACCGGTGAAA 59.024 47.619 14.63 0.00 41.83 2.69
2367 2461 1.640917 AGCTAAGGAAGACCGGTGAA 58.359 50.000 14.63 0.00 41.83 3.18
2368 2462 1.640917 AAGCTAAGGAAGACCGGTGA 58.359 50.000 14.63 0.00 41.83 4.02
2369 2463 2.474410 AAAGCTAAGGAAGACCGGTG 57.526 50.000 14.63 0.00 41.83 4.94
2370 2464 2.612221 CGAAAAGCTAAGGAAGACCGGT 60.612 50.000 6.92 6.92 41.83 5.28
2371 2465 2.000447 CGAAAAGCTAAGGAAGACCGG 59.000 52.381 0.00 0.00 41.83 5.28
2372 2466 2.666994 GTCGAAAAGCTAAGGAAGACCG 59.333 50.000 0.00 0.00 41.83 4.79
2373 2467 3.001414 GGTCGAAAAGCTAAGGAAGACC 58.999 50.000 9.27 9.27 39.83 3.85
2374 2468 3.001414 GGGTCGAAAAGCTAAGGAAGAC 58.999 50.000 0.00 0.00 0.00 3.01
2375 2469 2.635915 TGGGTCGAAAAGCTAAGGAAGA 59.364 45.455 0.00 0.00 0.00 2.87
2376 2470 3.053831 TGGGTCGAAAAGCTAAGGAAG 57.946 47.619 0.00 0.00 0.00 3.46
2377 2471 3.495434 TTGGGTCGAAAAGCTAAGGAA 57.505 42.857 0.00 0.00 0.00 3.36
2378 2472 3.713826 ATTGGGTCGAAAAGCTAAGGA 57.286 42.857 0.00 0.00 0.00 3.36
2379 2473 4.783764 AAATTGGGTCGAAAAGCTAAGG 57.216 40.909 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.