>input_sequence_80766
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-----------ATGGCGGCGACAGGGAGCGCTAAGAGCCGACGGTTCGCCGCAGCGTGCGGCGTTCTCAGCCGCTGCATC
AAGGCGGCGGAGGCGCGGCTGGTGGCT---------CTCCCCCTCATGCCCGGAGCGGAAGTGCCCGCGCTGCAAGACGA
GCACGCGGTGGGTCCTGCGCCGGAGCACGCGCAGATGACCATCTTCTACGGTGGGCGGGTGCTAGTGCTGGACGAGGTCC
CGGCCGACAAGGCCGCCGAGCTGCTCCGTGTCGCTGCCGCAGCAGGCACCGTGCGAGGGGAC---------------GGC
GACCTGCCC-ATGGCGAGGAAGGCGTCGCTGCAGAGGTTCATGGAGAAGCGCAAGGGAAGGCTCGCCGAGCGCGCCGTCC
CCTACAGCAGGCCCGACGGCGATGCGTTCTCCTGTAGCCGTCTCACGCTTACGCTCTGA---------------------
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>chr7D_1_TraesCS7D01G204200
ACCACCACCCAACCTCAGGTCACCGTCGCCATGGAGACTTTGATCGCCGCTGCGCAGCAGGGCGCCGCCCTGACTGCCGT
CCCCGACGTCCCCGCATGAAACGCCTGCTCGGCCTCACAGGGGATACCGCGGCAACCACCCACCATGGATCCTATGGCGT
CGGGCCCGCCATCACCGTGGCCCTTGCCTATGGCAACGGCGGCTGGGGATGGAACGAGGGGAGTCTAGCGGCTAGGGTTC
CGGGGGCCCTCGGCGTTGCTCGAGGGGAGGCGATGCGAGGGGTCGAGGGGATGCTGATACCTTCCCTCATGTATTGCCTT
TTCAATCTGTGCACCTCCTTGTCGCTGATGTTTGATTTTCTCGTGCGCCGGTCCTACAAAATTTCAAATGCTTGTAGTTG
ACTCTAAGTGGTTCATTTTGAGTTATACTTTGTGTTACTCATGATGAAGATCTTTGTACTGCTATTTATTGC--ATATAT
TACTTGAAAGCATAAAGGACTTTATTTAAGGAGGG--AAAAAAACCTCCTACGCCGGATACATTCGCCCATAGCCCTCTT
CTATCGATGACCGCCGCACCGGAGTCGGCAGCAGAGAGGGAGGGGCCCGCTCCGTCGATCTCTGTCTGATCTCTCCGCCT
GCCGCCGAGTAAACAACTGAACGTGTG-----------GCACTAGAGGACTACCAGCCACCACGTTGAAAATATCGTGCT
GTCCGTATAACCATTGTATAATCTCCGTCGACCAGCTCACCAGCACGTGTTCTTCGTGCGAGAGACGGCCAGGAAGAAAC
ACC---CCACCACGTCCCCCACATTCGACAGCAACAGCCCCACAC-----GACACGCTGCGATTCCTATAAAGTAAACCC
ATCAGTC----TCC------------------------TTCCTCCAACCAACACAGCAGACAGCACCCGATCAAGCAGAG
CCTCCCCTCCCCACTGCGACGCTCCAAGCTCGTTAGGCTTCGAGAGCGTACAGGGCGACCGATCGATCGAGCGAGCGAGC
GAGCGGCTAGAATGGCGGCGACAGGGAGCGCTAAGAGCCGACGGTTCGCCGCAGCGTGCGGCGTTCTCAGCCGCTGCATC
AAGGCGGCGGAGGCGCGGCTGGTGGCT---------CTCCCCCTCATGCCCGGAGCGGAAGTGCCCGCGCTGCAAGACGA
GCACGCGGTGGGTCCTGCGCCGGAGCACGCGCAGATGACCATCTTCTACGGTGGGCGGGTGCTAGTGCTGGACGAGGTCC
CGGCCGACAAGGCCGCCGAGCTGCTCCGTGTCGCTGCCGCAGCAGGCACCGTGCGAGGGGAC---------------GGC
GACCTGCCC-ATGGCGAGGAAGGCGTCGCTGCAGAGGTTCATGGAGAAGCGCAAGGGAAGGCTCGCCGAGCGCGCCGTCC
CCTACAGCAGGCCCGACGGCGATGCGTTCTCCTGTAGCCGTCTCACGCTTACGCTCTGATTCGTGTTCATGCGTA-----
----GTAGAG--------TAGCCTGAATAATTTACTGTCCATGTAAATGTGTGGCTGTTTTTGGAGTACAAATTCTGAAT
TATGATCAGAAAATTTTGCTGTCCTTGATTTGACCAACAAATCATGGCGAATTGGCTTGACTGGCTTCCTTTATTTATGA
CCAATCCACGGTCTATTTTTTTCAATTTGTCTAATTTACATCTAGATATTTTTTAAAAATGTCACATCTAAACTCTCACA
AATATATAATACAGCAAAAAAAACAAAAACTAAAACTAAAAAAATCACAAACAGAATGGACATTAGTTTAGATGTGACAT
AACTATGTCACATCTAGATGTGTCATAAACAGACTCTTTTTTCTTTACCAATTCATTGAATATTTTTTAGGGGGAAGGGT
TAAGACCAATCCATGGTCTTTGCTTCACATGCGCGATGACTTGGCAACTACTCCCTCTGTCGAGAAATACTTGTCTTAGA
AATGAAAAAAATAGATGTATTTATAACTAAAATAAGTCTAGATACAATCATTTCGAGGACAAGTATTTCCGGACGGAGGG
AGTATTCTCCACTTGGCCGTGTGGGCAGATGGACACGAGCATCTACTACAACCCCATGCCTCAAACGTCCTATCCGACAG
CCCGGTCACTGAGAATAAAAAAGACCACCCAACTGTAATCCTCATTTTGTCCGGAAATCAACTAGTTAACTGAGAATAAA
AAAGACTACCCAACTGTAATCCTCATTTTGTCCGGAAAGCAACTAGTTAACGAGCACTCCTTGAGGAGCCTCACAACGAT
CAGCGCCACTTGACGCGCTCTAAGCCATTCGCCACGTGTCACGCTCTGAGCTCTTCCTCCGAATTTTGTTTTTTTATTTT
TTCGCACGCGTTTTCGGCATTTTAAATACTTTGTTTTGGGTTTTTTCGACGTTTTGGTTTTTCACCGGTCTTCCTTAGCT
TTTCGACCCAATTTTTTTTAAAAACATGTTCTCTTT
>chr7A_1
ACCACCACCCAACCTCAGGTCACCTTCGCCATGGAAACTTTGATCGCCGCCGCAGCAG-GGGCGCCGCCCTGACTGTCGT
CCCTGACCTTCCCACATGAAACGCCTCCTCCACCTCACAGGGGATACCGCGGCGACCAGCCACCATGGATCCTATGGCGC
TGGGCTCACCATCACCATGGCCCTTGCCTATGGCAACGGCGACTGAGGATGAAACGAAGGGAGTCTGGCGGCTAGGGTTC
ATGGGGGGCCA-GCGTCGCCCGAGGGGAGGCGATACGAGGGGTCGAGGGGATGATGGTACCTTCCCTCATGTATTGCCTT
TTCGATATGTGCACCTCCTTGTCGGTGATGTTTGATTTTCTCGTGCGCCGGTCCTATAAAATTTCAAGTGCTTGTAGTTG
ACGTTAAGTGGTTCATT----------------------------------------------ATTTATTGCATATATAT
TACTTGAAAGCATAAAGGACTTTATTTAAGGAGGAAAAAGAAAACCTCCTACGCCGGATACATTCGTCCATA-CCCTCTT
CTATCGATGACCGCCGCACCGGAGTCGGCAGCAGAGAGGGAGGGGCCCGCTCCTTCAATTTCTGATC--TCTCTATGCCT
GCCGCCGAGTTAACAACTGTACGTGCG-----------G-----------TACCAGCCACCACGTTGAAAATATCGTGCT
GTCCGTATAACCATTGTATAATCTCCGTCGACCAGC--------ACGTGTTCTTCGTGCCAGAGACGGCCACGAAGAAAC
ACCCCGCCACCACGTCCCCCAAATTCGACAGCAACAGCCC-ACAC-----GACTCGCTGCGATTCCTATAAAGCAAACTC
ATCAGTC----TCC------------------------TTCCTCCAACCAACT-------CAACAACCGATCAAGCAGAG
CCTCCCCTCCCCCCTGCGACCGGCCGAGCTCGTTAGGCTTCGAGAGCGCACAGGGAGATCGGTCGATCGAGCGAGCGAGC
GAGCGGCTAGAATGGCGGCGACAGGGAGCGCTAAGAGCCGACGGTTCGCTGCAGCGTGCAGCGTTCTCAGCCGCTGCATC
AAGGCGGCGGAGGCGCGGCCGGTGGCT---------CTCCCCCTCATGCCCGGAGCGGAAGTGCCCGCGCTGCAAGACGA
GCACGCTGTGGGTCCTGCGCCGGAGCACGCGCAAATGACCATCTTCTACGGCGGGCAGGTGCTGGTGCTGGACGAGGTCC
CGGCAGAGAGGGCGGCCGAGCTGCTCCGGGTAGCTGCCGCAGCAGGCACCGCGCCAGGGGAC---------------GGC
GACCTGCCC-ATGGCGAGGAAGGCGTCGCTGCAGCGGTTCATGGAGAAGCGCAGGGGAAGGGTCGCCGCGCGCGCAGTCC
CTTACAGCCGGCCCGACGGCGACGCTTTCTCTTGTAACCGTCTCACGCTCACGCTCTGATTCGTGTTCATGCGTG-----
----GTAGAG--------TAGCCTGAGTAATTTACGGTCCATGTAAATGTGTGGCTGTTGTTGGAGTCCAAATCCTGAAT
TATGATGAGAAAATAATGCTGTCGTTGTTTTGACCAATCGATCGTGGCGAATTGGCTTGACTGGCTTCTTTTATTTATGA
CCAATCCATGGTCTT-----------------------------------------------------------------
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------------------------------------TTTTTTCTTTACCAATCCATTGATTTATTCTTTGGGGGGAGGGT
TAAGACCAACCCATGGTCTTTGCTTCACATGCGCGATGACTTGGCTACTATTCCC-------------------------
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>chr7B_476
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-----------------------------------------------------------------------------TAT
TACTTAAAAGAATAAAGGACTTTATTTAAGGAG-AAAAAAAAACCCTCCTACGCTAGATACATTTGCG------CCTCCT
CTATCGGTGACCGCCTCACCGAAGTCGGCAGCCGAGGGGGAGGGGCCCGCTCCGTCAATTTCTGATC--TCTCT--GCCT
GCGGCCGAGTAAACAACAGAACGTGCGGTACTAGAGGAG-----------TACCAGCCACCACGTTGAAAATATCGTGCT
GTC----TAACCATTGTATAATCTCCGTCGACCAGCTCACAAGCACGTGTTCTTCGTGCCAGAGACGGCCAGGAAGAAAT
ACCC---CACCACGCCCCCCACATTCGACAGCAACAGCCC-ACAGGAGAGGACACGCTGCGATTCCTATAAAGCAAACCC
ATCAATTTCTTTCT------------------------TTCCTCCA------------------ACCCGATCAAGCAGAG
CCTCCCCTCCCCACTGCGACACTTCAAGCTCGCTAGGCTTCAAGAGCGTACAGGGAGACCGATCGAT----CGAGCGAGC
GAGCGGCTAGAATGGCGGCGACAGGGAGCGCTAAGAGCCGACGGTTCGCCGCAGCGTGCGGCGTTCTCAGCCGCTGCATC
AAGGCGGCGGAGGCGCGGCCGGTGGCT---------CTCCCCCTCATGCCCGGAGCGGAAGTTCCCGCGCTGCAAGACGA
GCACGTGGTGGGTCCTGCGCCGGAGCACGCGCAGATGACCATCTTCTACGGCGGGCGGGTGCTGGTGCTGGACGAGGTCC
CGGCCGACAGGGCCGCCGAGCTGCTCCGTGTCGCTGCCGCAGCAGGCACCAAGAGAGGGGAC---------------GGC
GACCTGCCC-ATGGCGAGGAAGGCGTCGCTGCAGAGGTTCATGGAGAAGCGCAAGGGAAGGCTCGCCGAGCGCGCCGTCC
CCTACAGCAGGCCCGACGGCAACGCGGCCTCCTGTAACCGTCTCACGCTCACGCTCTGATTCGTGTTCATGCGTG-----
----GTAGAG--------TAGCTTGAGTAGTTTACGGTCCATGTAAATGTGTGGCTGTTGTTGGAGTCCAAATTCTGAAT
TATGATGAGAAAATATTGTTGTCGTTGTTTTGACCAACAGATCATGGCGAATTGGCTTGACTGGCTTCTTTTATTTATGA
CCAATCCATGGTCTTCTTTTTTT---------------------------------------------------------
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-----------------------------------------------CCAATCCATGGTCC-TTATTTTTTTGGGAGGGT
TAAAAGCAATCCATGGTCTTTGCTTCACATGCGCGATGACTTG-CTACTATTCCC-------------------------
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>chr7B_741
CTCG----------------------------------------------------------------------------
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--------------------------------------ACGAGCACGTGTTCTTGGTGCCAAAGTCGACCAGAAAGAAGC
ACC------CCACGTCCCCCCTATTTGACAGCAACAGCCC-ACAGGACGC--------GCGATTCCTATAAATCAAACCC
ATCTCACCACCTCCTAATCATCCATCAGCGTTTCATTATTCCTGCAACCAACAC------------CCGATCAACTAGCA
GAGG---------------CACTGCGAGCTAGCCAGGCTTCCAGAGCGTACAGGGCGACCGATCGATCCATCGACCGACC
GGCAAGC---AATGGCGGCGACAGGGAGCGCTAAGGGCCTACGGTTCGCTGCAGCGTGCGGCGTTCTCAGCCGCTGCATC
AAGGCGGCGGAGGCGCGGCCGGCGGCCACGGTGGTCCTCCCCCTCATGCCCGGAGCGGAAGTGCCCGCGC---GAGACGA
GCAAGCGGCAGGTCCTGCGCCGGCGAACGCGCAGATGACCATCTTCTACGGCGGGCAGGTGCTGGTGCTGGACGAGGTCC
CAGCCGACAGGGCGGCCGAGCTGCTCCGTGTCGCTGCCGCTGCAGGCACCAAGAGAGGGGACGGCGAGGCAGCGGATGGC
GACCTGCCC-ATGGCGAGGAAGGCGTCCCTGCAGCGGTTCATGGAGAAGCGCAAGGGAAGCGTCGCCGCGCGCGCCGTCC
CCTACAGCCGCCCCGACGGCGGCGCGGCCTCTTGTAACCGTCTCACGCTTACGCTCTGATTCGTGTT-------------
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>chr7B_981
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-----------------------------------------------------------------------CGATCGATC
GAGCGCCAAGAATGGCGGCGTCAGGGAGCGCTCAGAGCCGACGGTTCGCCGCAGCGTGCGGCGTTCTCAGCCGCTGCATC
AAGGCGGCGGACGCGCAGCCGGCGGCCACGGTGGTCCTCCCCCTCATGCCCGGAGCGGATGTGCCCGCGC---AAGACGA
GCAGGCGGCGGGTCCTCCGCCGGCGAAGGCGCAGATGACCATCTTCTACGGCGGGCAGGTGCTGGTACTCGACGAGGTCC
CGGACGACAGGGCGGCCGAGCTGCTCCGTGTCGCTGCCGCAGCAGGCACCACGCGAGGGGAC---------------GGC
GACCTGCCC-ATGGCGAGGAAGGCGTCGCTGCAGCGGTTCATGGAGAAGCGCAAAGGAAGGCTCGCCGCTCGCGCCGTCC
CCTACAGCCGGCCCGACGGCGACGCGTTCGCCTGTAACCGT----CGCTTACGCTCTGATTCGTGTTCATGATGCG----
--TAGTAGAG--------TAGCCTGAGTAATTTACGGTCCATGTAAATGTGTGGCTGCTGTTAGAGTA------------
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>chr7B_981
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-----------------------------------------------------------------------CGATCGATC
GAGCAGCAAGAATGGCGGCGTCAGGGAGCGCTCAGAGCCGGCGGTTCGCCGCAGCGTGCGGCGTTCTCAGCCGCTGCATC
AAGGCGGCGGAGGCGCGGCCGGCGGCCACGGTGGTCCTCCCCCTCATGCCCGGAGCGGAAGTGCCCGATC---AAGACGA
GCACGCGGCGGGTCCTCCGCCGGCGAACGCGCAGATGACCATCTTGTACGGCGGGCAGGTGCTGGTACTCGACGAGGTCC
CGGACGACAGGGCGGCCGAGCTGCTCCGTGTCGCTGCCGCAGCAGGCACCACGCGAGGGGAC---------------GGC
GACCTGCCC-ATGGCAAGGAAGGCGTCGCTGCAGCGGTTCATGGAGAAGCGCAAAGGAAGGCTCGCCGCTCGCGCCGTCC
CCTACAGCCGGCCCGACGGCGACGCGTTCGCCTGTAACCGTCTCACGCTTACGCTCTGATTCGTGTTCATGATGCG----
--TAGTAGAGACGTAGAGTAGCCTGAGTAATTTATGGTCCATGTAAATGTGTGGCTGCTGTTAGAGTA------------
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>chr7A_985
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---------------------------------------------------------------------------CGATC
GAGCGCCAAGAATGGCGGCGTCAGGGAGCGCTCAGAGCCGACGGTTCGCCGCAGCGTGCGGCGTTCTCAGCCGCTGCATC
AAGGCGGCGGACGCGCGGCCGGCGGCCACGGTGGTCCTCCCCCTCATGCCCGGAGCGGAAGTGCCCGCGC---AAGACGA
GCACACGGTGGGTCCTGCGCCGGGGCACGCGCAGATGACCATCTTCTACGGCGGGCAGGTGCTGGTGCTGGACGAGGTCC
TGGCCGACAGGGCGGCCGAGCTGCTCCGTGTCGCTGCCGCAGCAGGCGCCACGCGAGGGACT---------------GGC
GAGGCGGCAGATGGCGAGGAAGGCGTCGCTGCAGCGGTTCATGGAGAAGCGCAAGGGAAGGGTCGCCGCGCGCGCAGTCC
CCTACAGCCGCCCCGACGGCGACGCGGCCTCCTGTAACCGTCTCACGCTTACCCTCTGATAAGTGTTCATGCGTACTAGT
ACTATTAGAG--------TAGCCTGAGTAAATTACGGTCCATGTAAATACGACGCTGCTGTTGAAGTCCAAATTGCTGA-
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>chr7D_998
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--------AGAATGGCGGCGTCAGGGAGCGCTCAGAGCCGACGGTTCGCCGTAGCGTGCGGCGTCCTCAGCCGCGGCATC
AAGGCGGCGGACGCGCGGCCGGCGGCCACGGTGGTCCTCCCCCTCATGCCCGGAGCCGAAGTGCCCGCGC---AAGATGA
GCATGCGGCGGGTCCTGCGCCGGCGAGCGCGCAGATGACCATCTTGTACGGCGGGCAGGTGCTGGTGCTGGACGAGGTCC
CGGTTGACAGGGCGGCCGAGCTGCTCCGTGTCGCTGCCGCAGCAGGCACCACGCGAGGGAAC---------------GGC
GACCTGCCC-ATGGCGAGGAAGGCGTCGCTGCAGCGGTTCATGGAGAAGCGCAAGGGAAGGGTCGCCGCGCGCGCCGTCC
CCTACAGCCGGCCCGACGGCGACACGGCCTCCTGTAATCGTCTCACGCTTACGCTCTGATTCGTGTTCATGATGCG----
--TAGTAGAG--------TAGCCCGAGTAATTTACGGTCCAAGCAAATGTGTGGCTGCTGTTGGAGTCCAAATT------
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>chr7A_998
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--------AGAATGGCGGCGTCAGGGAGCGCTCAGAGCCGACGCTTCGCTGTAGCGTGCGGCGTCCTCAGCCGCTGCATC
AAGGCGGCCGAGGCGCGGC---------CGGTGGTCCTCCCCCTCATGCCCGGAGCCGAAGTGCCCGCTG---AAGACGA
GCGCGCGGCGGGTCCTGCGCCGGCGAGCGCGCACATGACCATCTTCTACGGCGGCCAGGTGCTGTTGCTCGACGAGGTCC
CGGACGACAGGGCGGCCGAGCTGCTCCGTGTCGCTGCCGCAGCAGGCAGCGCGCGAGGGGAC---------------GGC
GACCTGCCC-ATGGCGAGGAAGGCGTCACTGCAGCGGTCCATGGAGAAGCGCAAGGGGAGGCTCGCCGCGCGCGCCGTCC
CCTACAGCCGGCCCGACGGCGACACGGCCTCCTGTAATCGTCTCACGCTTACCCTCTGATTCGTGTTCATGCGTA-----
----GTAGAG--------TAGCCTGAGTAATTTACGGTCCACGCAAATGTGTGGCTGCTGTTGGAGTCCAAATT------
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>SNPs
------------------------S----------S--------------S--SSSSSS-----------------S---
---S---S-S---S------------S---SS---------------------S----S--------------------S
S----S-S--------S------------------------S---S-----S-----S--------S-------------
SS----SS-SSS----S--S--------------S------------------S--S-----------------------
---S--S-----------------S-------------------------------S----------S------------
--SS-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
----------------------------------S-------------------------------------S-------
--------------------------------------------------------S--S----SSSSS-----SS----
-------------------------S-------------SSSSSSSSSSS------------------------------
----------------------------------------S------------------S--------------------
----------------------------------------S--------------------------------S------
------------------------------------------------------SSSSSS--S-----------------
--------------------S-----------------------------------------------------------
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-------------------S------------------------------------------------------------
---------------------------------------------------S-----------S----------------
---------S-----------------------------------------S----------------------------
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----------------------S-------------S-------------------------------------------
--------------------------S--------S-----------------------S--------------------
------S-------S--------S---S-----------S----------------------------S-----------
--------S-----SS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S------S-S------S-----S-----
---------------------------------------------S----S----SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_628
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------------------------------------------------GCTCCGTCGATCTCTGTCTG------------
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>reverse_2062
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-------------------------------------------------------------AGTATTTCCGGACGGAGGG
A-------------------------------------------------------------------------------
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